CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP021106	Nitrosospira lacus strain APG3 chromosome, complete genome	1 crisprs	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh	0	3	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021106_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021106_1

1835361-1837208

TypeI-E

Consensus_repeat	Method
GTTTCCCCCGCGCCTGCGGGGATAGGCCC	PILER-CR
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CRISPRCasFinder
GTTTCCCCCGCGCCTGCGGGGATAGGCCNN	CRT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	PILER-CR

30 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP021106_1

>merge|NZ_CP021106|1|1835361-1837208|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTTCCCCCGCGCCTGCGGGGATAGGCCCCTGCGCAATCCCGCGGTAATTGACGCGGCGGGGTTTCCCCCGCGCCTGCGGGGATAGGCCCGTTAGTTCTCACACTGCAAGACGCCGCTAGTAGTTTCCCCCGCGCCTGCGGGGATAGGCCGTATTCGTTGACCGCTGACCTCAAAGCCTTCTCGTTTCCCCCGCGCCTGCGGGGATAGGCCCATGACGCTAACGGGTAAGACAATCAATGCGGAGTTTCCCCCGCGCCTGCGGGGATAGGCCCATGTGCCCAGTGTCCACCAAGGCTTTTGAGAAGTTTCCCCCGCGCCTGCGGGGATAGGCCGTAGGGGCAATGGAGAGTAACGCATCTCTAACCGTTTCCCCCGCGCCTGCGGGGATAGGCCCAGTCGTCAGAATGGGTTGCGTTGGGATGGCTGGTTTCCCCCGCGCCTGCGGGGATAGGCCCATATAAGAGCTGCCCTTTGAGGCGGCTTTTTTGTTTCCCCCGCGCCTGCGGGGATAGGCCTTCAAATGGCAGGCGTGAAAGGTAAGAGTGGCGGTTTCCCCCGCGCCTGCGGGGATAGGCCCTGAGGTAGGCGAGTTATTCACGACTTGGCAGAGTTTCCCCCGCGCCTGCGGGGATAGGCCCTTCAGACAGAGGCCGCGAGAATTGACCTTGCCGTTTCCCCCGCGCCTGCGGGGATAGGCCCACTAAAGGCGCTGGCGGCCGACAGCAATACGGGTTTCCCCCGCGCCTGCGGGGATAGGCCCCCAGCTAATACAAAGGATCAGCCAACCGCTAGGTTTCCCCCGCGCCTGCGGGGATAGGCCACCAATCCGCCAGCTATCGTTGTGCCTGGATACGTTTCCCCCGCGCCTGCGGGGATAGGCCCCACTCCGGGAATGTGTTGGGGATATTCACAGCGTTTCCCCCGCGCCTGCGGGGATAGGCCCCACCCGATAGGCTCTAGCCATTCCCTAATGCTGTTTCCCCCGCGCCTGCGGGGATAGGCCCTCGACCGCCAGCGCGAACATATCTCCTGGGTGGTTTCCCCCGCGCCTGCGGGGATAGGCCTCACCCGGGTGAGTAGGATGAAGCCAGTACGCTGTTTCCCCCGCGCCTGCGGGGATAGGCCTTAGAAGGCGGCCGGTACAGGGAGTTGAAGTTAGTTTCCCCCGCGCCTGCGGGGATAGGCCCACGCACAACGTCATCGAGCGATTCCACAATGAGTTTCCCCCGCGCCTGCGGGGATAGGCCCGTCAGGCGGGAGTCCGGCAGGGGCGGCGGAGAGTTTCCCCCGCGCCTGCGGGGATAGGCCCTCTGTGGTAATGTCTCCGAACAGAACGACATCGTTTCCCCCGCGCCTGCGGGGATAGGCCCTGGTTCGTCTTGGTCAGGTTAACCGATGTCGTGTTTCCCCCGCGCCTGCGGGGATAGGCCCCGTTACGACTACTGGGGCAAATAGCCATATCAGTTTCCCCCGCGCCTGCGGGGATAGGCCCCGGCAGGATACGCATCGGCTGTTGACGGGGATGTTTCCCCCGCGCCTGCGGGGATAGGCCCAAGCTTAATCCACACTGCGAAACGCATCACCTGTTTCCCCCGCGCCTGCGGGGATAGGCCGCGATGCGGGTGTCGGGCGCGGCTCCGTCCATGGTTTCCCCCGCGCCTGCGGGGATAGGCCCGTATCGAATGGGGCGGTGATAGTTCCTAAAGAGTTTCCCCCGCGCCTGCGGGGATAGGCCCGCAGAAGGCATTATGGCATTGCTAATGCCGAAGTTTCCCCCGCGCCTGCGGGGATATGCTGTCGAAGTACTCTCGAGTACTCTATTTCCCCCGCCTACCAAATGGGGTTAT

>NZ_CP021106|1|1|1835361-1835572|PILER-CR
GTTTCCCCCGCGCCTGCGGGGATAGGCCC	CTGCGCAATCCCGCGGTAATTGACGCGGCGGG
GTTTCCCCCGCGCCTGCGGGGATAGGCCC	GTTAGTTCTCACACTGCAAGACGCCGCTAGTA
GTTTCCCCCGCGCCTGCGGGGATAGGCCG	TATTCGTTGACCGCTGACCTCAAAGCCTTCTC
GTTTCCCCCGCGCCTGCGGGGATAGGCCCATGACGCTAACGGGTAAGACAATCAATGCGGAGTTTCCCCCGCGCCTGCGGGGATAGGCCCATGTGCCCAGTGTCCACCAAGGCTTTTGAGAAGTTTCCCCCGCGCCTGCGGGGATAGGCC	GTAGGGGCAATGGAGAGTAACGCATCTCTAACC
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CAGTCGTCAGAATGGGTTGCGTTGGGATGGCTG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CATATAAGAGCTGCCCTTTGAGGCGGCTTTTTT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	TTCAAATGGCAGGCGTGAAAGGTAAGAGTGGCG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CTGAGGTAGGCGAGTTATTCACGACTTGGCAGA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CTTCAGACAGAGGCCGCGAGAATTGACCTTGCC
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CACTAAAGGCGCTGGCGGCCGACAGCAATACGG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CCCAGCTAATACAAAGGATCAGCCAACCGCTAG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	ACCAATCCGCCAGCTATCGTTGTGCCTGGATAC
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CCACTCCGGGAATGTGTTGGGGATATTCACAGC
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CCACCCGATAGGCTCTAGCCATTCCCTAATGCT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CTCGACCGCCAGCGCGAACATATCTCCTGGGTG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	TCACCCGGGTGAGTAGGATGAAGCCAGTACGCT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	TTAGAAGGCGGCCGGTACAGGGAGTTGAAGTTA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CACGCACAACGTCATCGAGCGATTCCACAATGA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CGTCAGGCGGGAGTCCGGCAGGGGCGGCGGAGA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CTCTGTGGTAATGTCTCCGAACAGAACGACATC
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CTGGTTCGTCTTGGTCAGGTTAACCGATGTCGT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CCGTTACGACTACTGGGGCAAATAGCCATATCA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CCGGCAGGATACGCATCGGCTGTTGACGGGGAT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CAAGCTTAATCCACACTGCGAAACGCATCACCT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	GCGATGCGGGTGTCGGGCGCGGCTCCGTCCATG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CGTATCGAATGGGGCGGTGATAGTTCCTAAAGA


>NZ_CP021106|1|1|1835361-1837157|CRISPRCasFinder
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CCTGCGCAATCCCGCGGTAATTGACGCGGCGGG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CGTTAGTTCTCACACTGCAAGACGCCGCTAGTA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	GTATTCGTTGACCGCTGACCTCAAAGCCTTCTC
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CATGACGCTAACGGGTAAGACAATCAATGCGGA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CATGTGCCCAGTGTCCACCAAGGCTTTTGAGAA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	GTAGGGGCAATGGAGAGTAACGCATCTCTAACC
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CAGTCGTCAGAATGGGTTGCGTTGGGATGGCTG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CATATAAGAGCTGCCCTTTGAGGCGGCTTTTTT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	TTCAAATGGCAGGCGTGAAAGGTAAGAGTGGCG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CTGAGGTAGGCGAGTTATTCACGACTTGGCAGA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CTTCAGACAGAGGCCGCGAGAATTGACCTTGCC
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CACTAAAGGCGCTGGCGGCCGACAGCAATACGG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CCCAGCTAATACAAAGGATCAGCCAACCGCTAG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	ACCAATCCGCCAGCTATCGTTGTGCCTGGATAC
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CCACTCCGGGAATGTGTTGGGGATATTCACAGC
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CCACCCGATAGGCTCTAGCCATTCCCTAATGCT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CTCGACCGCCAGCGCGAACATATCTCCTGGGTG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	TCACCCGGGTGAGTAGGATGAAGCCAGTACGCT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	TTAGAAGGCGGCCGGTACAGGGAGTTGAAGTTA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CACGCACAACGTCATCGAGCGATTCCACAATGA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CGTCAGGCGGGAGTCCGGCAGGGGCGGCGGAGA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CTCTGTGGTAATGTCTCCGAACAGAACGACATC
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CTGGTTCGTCTTGGTCAGGTTAACCGATGTCGT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CCGTTACGACTACTGGGGCAAATAGCCATATCA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CCGGCAGGATACGCATCGGCTGTTGACGGGGAT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CAAGCTTAATCCACACTGCGAAACGCATCACCT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	GCGATGCGGGTGTCGGGCGCGGCTCCGTCCATG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CGTATCGAATGGGGCGGTGATAGTTCCTAAAGA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CGCAGAAGGCATTATGGCATTGCTAATGCCGAA
GTTTCCCCCGCGCCTGCGGGGATATGCT

>NZ_CP021106|1|1|1835361-1837208|CRT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CCTGCGCAATCCCGCGGTAATTGACGCGGCGGG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CGTTAGTTCTCACACTGCAAGACGCCGCTAGTA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	GTATTCGTTGACCGCTGACCTCAAAGCCTTCTC
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CATGACGCTAACGGGTAAGACAATCAATGCGGA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CATGTGCCCAGTGTCCACCAAGGCTTTTGAGAA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	GTAGGGGCAATGGAGAGTAACGCATCTCTAACC
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CAGTCGTCAGAATGGGTTGCGTTGGGATGGCTG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CATATAAGAGCTGCCCTTTGAGGCGGCTTTTTT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	TTCAAATGGCAGGCGTGAAAGGTAAGAGTGGCG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CTGAGGTAGGCGAGTTATTCACGACTTGGCAGA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CTTCAGACAGAGGCCGCGAGAATTGACCTTGCC
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CACTAAAGGCGCTGGCGGCCGACAGCAATACGG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CCCAGCTAATACAAAGGATCAGCCAACCGCTAG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	ACCAATCCGCCAGCTATCGTTGTGCCTGGATAC
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CCACTCCGGGAATGTGTTGGGGATATTCACAGC
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CCACCCGATAGGCTCTAGCCATTCCCTAATGCT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CTCGACCGCCAGCGCGAACATATCTCCTGGGTG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	TCACCCGGGTGAGTAGGATGAAGCCAGTACGCT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	TTAGAAGGCGGCCGGTACAGGGAGTTGAAGTTA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CACGCACAACGTCATCGAGCGATTCCACAATGA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CGTCAGGCGGGAGTCCGGCAGGGGCGGCGGAGA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CTCTGTGGTAATGTCTCCGAACAGAACGACATC
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CTGGTTCGTCTTGGTCAGGTTAACCGATGTCGT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CCGTTACGACTACTGGGGCAAATAGCCATATCA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CCGGCAGGATACGCATCGGCTGTTGACGGGGAT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CAAGCTTAATCCACACTGCGAAACGCATCACCT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	GCGATGCGGGTGTCGGGCGCGGCTCCGTCCATG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CGTATCGAATGGGGCGGTGATAGTTCCTAAAGA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CGCAGAAGGCATTATGGCATTGCTAATGCCGAA
GTTTCCCCCGCGCCTGCGGGGATATGCT	GTCGAAGTACTCTCGAGTACTCT
ATTTCCCCCGCCTACCAAATGGGGTTAT

>NZ_CP021106|1|2|1835666-1837096|PILER-CR
	CTGCGCAATCCCGCGGTAATTGACGCGGCGGG
GTTTCCCCCGCGCCTGCGGGGATAGGCCC	GTTAGTTCTCACACTGCAAGACGCCGCTAGTA
GTTTCCCCCGCGCCTGCGGGGATAGGCCG	TATTCGTTGACCGCTGACCTCAAAGCCTTCTC
GTTTCCCCCGCGCCTGCGGGGATAGGCCCATGACGCTAACGGGTAAGACAATCAATGCGGAGTTTCCCCCGCGCCTGCGGGGATAGGCCCATGTGCCCAGTGTCCACCAAGGCTTTTGAGAAGTTTCCCCCGCGCCTGCGGGGATAGGCC	GTAGGGGCAATGGAGAGTAACGCATCTCTAACC
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CAGTCGTCAGAATGGGTTGCGTTGGGATGGCTG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CATATAAGAGCTGCCCTTTGAGGCGGCTTTTTT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	TTCAAATGGCAGGCGTGAAAGGTAAGAGTGGCG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CTGAGGTAGGCGAGTTATTCACGACTTGGCAGA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CTTCAGACAGAGGCCGCGAGAATTGACCTTGCC
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CACTAAAGGCGCTGGCGGCCGACAGCAATACGG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CCCAGCTAATACAAAGGATCAGCCAACCGCTAG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	ACCAATCCGCCAGCTATCGTTGTGCCTGGATAC
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CCACTCCGGGAATGTGTTGGGGATATTCACAGC
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CCACCCGATAGGCTCTAGCCATTCCCTAATGCT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CTCGACCGCCAGCGCGAACATATCTCCTGGGTG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	TCACCCGGGTGAGTAGGATGAAGCCAGTACGCT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	TTAGAAGGCGGCCGGTACAGGGAGTTGAAGTTA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CACGCACAACGTCATCGAGCGATTCCACAATGA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CGTCAGGCGGGAGTCCGGCAGGGGCGGCGGAGA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CTCTGTGGTAATGTCTCCGAACAGAACGACATC
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CTGGTTCGTCTTGGTCAGGTTAACCGATGTCGT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CCGTTACGACTACTGGGGCAAATAGCCATATCA
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CCGGCAGGATACGCATCGGCTGTTGACGGGGAT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CAAGCTTAATCCACACTGCGAAACGCATCACCT
GTTTCCCCCGCGCCTGCGGGGATAGGCC	GCGATGCGGGTGTCGGGCGCGGCTCCGTCCATG
GTTTCCCCCGCGCCTGCGGGGATAGGCC	CGTATCGAATGGGGCGGTGATAGTTCCTAAAGA
GTTTCCCCCGCGCCTGCGGGGATAGGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021106.3\|WP_004174212.1\|1845314_1845740_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021106.3\|WP_051048877.1\|1837309_1837906_-\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224104
NZ_CP021106.3\|WP_004174188.1\|1834131_1835025_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP021106.3\|WP_004174175.1\|1826659_1829305_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP021106.3\|WP_004174177.1\|1830877_1831465_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0196_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP021106.3\|WP_051048879.1\|1844436_1845090_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021106.3\|WP_151898894.1\|1848994_1849171_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373108
NZ_CP021106.3\|WP_004174182.1\|1831495_1832695_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP021106.3\|WP_040851069.1\|1839556_1839982_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021106.3\|WP_004174196.1\|1838116_1838554_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021106.3\|WP_004174183.1\|1832696_1833416_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_CP021106.3\|WP_004174189.1\|1834996_1835293_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|378244
NZ_CP021106.3\|WP_004174214.1\|1845981_1848825_-\|cation-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319775
NZ_CP021106.3\|WP_004174174.1\|1824522_1826220_-\|alkaline-phosphatase-D-family-protein	unknown	unknown	gnl\|CDD\|277335
NZ_CP021106.3\|WP_081607208.1\|1840561_1843057_+\|DEAD/DEAH-box-helicase	cas3	cd09710_cas3_CAS-I-D	gnl\|CDD\|274800
NZ_CP021106.3\|WP_004174209.1\|1843053_1844400_+\|ribonuclease-H-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|225895
NZ_CP021106.3\|WP_151898893.1\|1839058_1839256_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021106.3\|WP_004174186.1\|1833412_1834138_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|215025
NZ_CP021106.3\|WP_040851066.1\|1829301_1830891_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cls000028_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP021106.3\|WP_004174173.1\|1823907_1824393_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|372667

Protein	Function_ID	Function_description	E-value
NZ_CP021106.3\|WP_051048877.1\|1837309_1837906_-\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|224104	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].	4.60427e-27
NZ_CP021106.3\|WP_004174188.1\|1834131_1835025_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	2.73128e-107
NZ_CP021106.3\|WP_004174175.1\|1826659_1829305_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	4.06484e-80
NZ_CP021106.3\|WP_004174177.1\|1830877_1831465_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	1.60274e-08
NZ_CP021106.3\|WP_151898894.1\|1848994_1849171_+\|hypothetical-protein	gnl\|CDD\|373108	pfam14521, Aspzincin_M35, Lysine-specific metallo-endopeptidase. This is the catalytic region of aspzincins, a group of lysine-specific metallo-endopeptidases in the MEROPS:M35 family. They exhibit the following active-site architecture. The active site is composed of two helices and a loop region and includes the HExxH and GTxDxxYG motifs. In UniProt:P81054, His117, His121 and Asp130 coordinate to the catalytic zinc ligands. An electrostatically negative region composed of Asp154 and Glu157 attracts a positively charged Lys side chain of a substrate in a specific manner.	2.45537e-08
NZ_CP021106.3\|WP_004174182.1\|1831495_1832695_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.1181e-121
NZ_CP021106.3\|WP_004174209.1\|1843053_1844400_+\|ribonuclease-H-like-domain-containing-protein	gnl\|CDD\|225895	COG3359, COG3359, Predicted exonuclease [DNA replication, recombination, and repair].	9.79003e-30
NZ_CP021106.3\|WP_004174183.1\|1832696_1833416_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	2.51357e-52
NZ_CP021106.3\|WP_004174189.1\|1834996_1835293_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	1.36177e-25
NZ_CP021106.3\|WP_004174214.1\|1845981_1848825_-\|cation-translocating-P-type-ATPase	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP021106.3\|WP_004174174.1\|1824522_1826220_-\|alkaline-phosphatase-D-family-protein	gnl\|CDD\|277335	cd07389, MPP_PhoD, Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.23399e-22
NZ_CP021106.3\|WP_081607208.1\|1840561_1843057_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|274800	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.	0
NZ_CP021106.3\|WP_004174186.1\|1833412_1834138_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	1.60929e-25
NZ_CP021106.3\|WP_040851066.1\|1829301_1830891_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	3.74554e-20
NZ_CP021106.3\|WP_004174173.1\|1823907_1824393_+\|VOC-family-protein	gnl\|CDD\|372667	pfam13669, Glyoxalase_4, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.	2.74798e-12

>NZ_CP021106.3|WP_004174189.1|1834996_1835293_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MALVVIVTRDVAYKYRGFLSSIMLEIAPTVYLSPHLNAGIRARAWDILADWYKAEPQGSIVMVWKDVNEIGGVGIKNLGNPPSELVELDGLWVVKHMM
>NZ_CP021106.3|WP_004174188.1|1834131_1835025_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MLKGRLGLETARIPHADRHGLIWLERGELCVVDGCLNFLSGKHTVEPHILQVPHQAISMILLGPGSSVTHDALRLLARHGTLMAAVGVDGVRTYTAPPLMPDRSDVARRQAELWGSPRRRISVARHMYALRLGEVLPHRDLDTLRGIEGARVKTIYRLMAEKYGIKWNGRHYDRGDPGAADTPNQAINHAATAVQAAAAIAVQSLAAVPQLGFIHEDSGQAFVLDIADLFRDSITLHIAFSAAKKISEGDETIIDRLVRREASTIFRKQGVIPAMIDKIKQVLRTEETNGSGSDSNA
>NZ_CP021106.3|WP_004174186.1|1833412_1834138_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTFKLIRLQPDSVALASWAARYKVLSPDGDYGYAFHSLLSTVFGEQAPKPFRHMDAKQGLLAYTSAKLETLRLNASLAAPDVARALGLDELDARPFPDTWKEGQILGFEVRVRPVIRAKDGRERDAFLHAVDILPAAENGGIAQRAAIYQDWLAKQLAAEGAAQIIQAQMEAFRLTRVLRKESAGDNEKRRVRFITGPDVVFKGQLRVDSSNAFTRLLARGVGRHRTFGFGMLLLKPAASC
>NZ_CP021106.3|WP_004174183.1|1832696_1833416_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MHRHLLLRLESPLSAFGGETIDNFGVTRDFPALSMVTGLFANALGWRREDCVLHDRLQSRLIVGTRLNTPLQRLRDFQTAQLGKNDKGWTTWGIPEERRGGAGTYEGPHLRYRDYHASLDVLVALRLEPAHEAPTLSDLALALDHPARPLFIGRKSCLPSHRLFSGWQEADNVLHALRTAQIPEIGNAQSLRMQWPDGEGRLAGDRLIDLCDERNWTSGVHGGWRPVREGSFTLQGAQT
>NZ_CP021106.3|WP_004174182.1|1831495_1832695_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MPLPRFIQIHTLHTYPAALLNRDDAGLAKRLPLGNAVRTRISSQCLKRHWRVTDDQFALSRLDVPMAIRSRLTLELISKRIEENGIPAALAQAAAEALRDGGLLDKGGKDKKGEDALKTGQAVLMGKPEIDYLVARCTQLAQAGPDEKSIKADVINALKNEKNNIRALKHGSGLESALFGRMVTSDILASREASIYVSHAFTVHQAQVENDYFTVVDDLSREAGDLGSAGIFDTELASGLYYGYVVVDVPQLIENLEGIAAKECFADGIPVERRELAGRMVQHLLHLIATVSPGAKRGSTAPFDWAKFVLVEAGDWQPRSLAGAFHDALPLEEKNNPGTIRQRAVARLTQEITAMDDAYGATLARRFLALDTVEVPSAERASLSRLGAWASEIVRQGAC
>NZ_CP021106.3|WP_004174177.1|1830877_1831465_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSLSDAVPRQQPEKPVSDEIAFNGGKEQPISRLAHIIAQASRFSGDAHGLDNGERAALARLDPDGELRPHQIAALSRALIYAGLEPDTWQVETWQRWSLIAHGMALAGHDISQSLGQQLSRADVSESRVTKLLTSRGDAFRQILPRLLRLLASKNVEPNWHELGGLILNQERDEEKAEVTRLRIAGRFFTAEARK
>NZ_CP021106.3|WP_040851066.1|1829301_1830891_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MTLQYSLLGEPLIRARDVSGGQPIKYNLPRLFVALAHDEVRDFPALRPHQRHPWHAFLVQLAAMALHRAGQDQSFASEQAWRDALLALTPEHPDGAPWCLIAPHDKPAFMQAPVPDGRTSDWKNILYTPDELDMLVTSKNHDLKAARMRQAEPDDWLMGLISLQTQEGFLGAGNYGISRMNGGFANRPALGVVPKGYWGRRWQRDVAALLNHRAEIAEHIGLRVQNGIQLLWLPAWTGDDSLAFSSLDPFYIEICRRIRLILLGGSRSIGAIAKGSKAARVEAEERKGITGDAWMPVDTAAGKALTITSKGFDYQLAAELVFGNKFQRPSAQILDVTDGTEGVVVLAQGITRGQGKTEGYHERRIPVSPKVRMLLMQKPSDLSATIAGERIDAISKIRSVLWTAMATLFDQGAVKDRFSDSAKNKANEFIRSFEQAEDARFFDELNAEIESDDPGGARLQWLLSMADRAEVVLRNAFITGPQSSEQRYRAQSAALSRLHGGLRSDKTLPTLANYYRHLTANKENAHEPV
>NZ_CP021106.3|WP_004174175.1|1826659_1829305_+|CRISPR-associated-helicase/endonuclease-Cas3
MVILPSDAFGKLQRNEFDAVIGWHPLIDHMIDVAATFECLCACRSIRRSMREAAGTLLDERDIERLSVLVFLHDVGKANSGFQAKRWKNLHDIPKEWPCHAGHGIEAFKLFDPSNRLDHLSTLLPVDQMDTWGDACSPLLVASISHHGRPLKDTPADWSKNIWKKVGGAYDPALVLNEMGKRVVELFPQAFEPGGRSLPDAPAFGHLFAGLVQLADWLGSDTKFFPYSEKEEDRAVTARERARKAVSAIGLDADNWRDKLKHHPPSFADTFGIAEPRPIQAAMSNDRLGPLVILESETGSGKTEAALWRFVHLFRAGLVDSLYFALPTRVAASQIYNRTQAVVRNLWIENPPVTVRALPGYVNADGGDATYLPNFDVLWSDNPDDAEAHRRWAAESAKRFLAAPIAVGTVDQALLGALQVRHAHLRHAMLARSLLVVDEVHASDPYMTVLLERLLKAHLNNGGHAMLLSATLGSSARNRYLALAPHVESPQAKSMTFEAACGVPYPAISDYSQTQAVEAAGGTKKVTWAAYDIIGAPDRIANMAIDAARLGAKVLVIRNTVIDAIATLAAIEENIPDKTWLFTVNGVVTLHHSRFSRQDRPVMDKAIEAQLGKQRPPGALIVVGTQTLEQSLDIDADLLITDLCPMDVLLQRIGRLHRHVRPASERPQAFQSAKAWVLTPAVHDLNPLIAKSRHGLGRFHNGGGVYADLRVLEATRELLIERPVVLIPADNRYLVESATHPDRLRVIQVKNGESWQVLGQKIEGETSAQRTVGHLHALDVEQVFGEQEFPRDVQIATRLGAQDRILYFNLELPSAFGVPIKELPVRHHLLPKDLSLDVLSSDINQTKTSLTFRLGEARFSYSRLGLERMNDTLCADTGGLP
>NZ_CP021106.3|WP_004174174.1|1824522_1826220_-|alkaline-phosphatase-D-family-protein
MKTFHFYDRGSDRPWINPMLTNAVIVGHTTATSTKLWMRAYQPNSYRMVICPEPFLGPDEVATDWNPETKIKKGKEIFLLKNIHSGEKREIANAVLTDKADLVFGQDITKVWEIDGLKPGQRYYYAAFALDLAARKTPWEIVPDNKVNRFRTQSGSQESMTFGLFSCHMPYRKNSFDLVNIHMWDRFGDELEQRNGEFILGVGDQVYVDGNSNVSIWEWLKKIRKEFMQEVKPEDRVEVMRSWYRDIYRGYWGHRQLRNVFSRFPIYMMWDDHEILDGWGSYDAKERRNLLDSWWDWGDDDEKLLLLNQMYEAAKLTYHEYEHSHNPETPANQFDYAFTWGTAAFYVLDMRGQRDYTRATDDRILGQAQMQRFKDWLGSKTVKNAESIFVVSPVPVVHAMSFVVNYLDILGVADDMRDEWEHESNWVERDVLLDAAFAAAKAQGKSLYFLSGDVHIGAAFRMTHKKYPDTRIYQLTSSAITYDLPWAKASALALIVRDKGLLQRDAEHSEPNVAFQLLMEPCKTNNFAVINVQRNDQGQTEVRWDLYGSAEQRATVTKLERLVLI
>NZ_CP021106.3|WP_004174173.1|1823907_1824393_+|VOC-family-protein
MFDSPYYHIGILVHDFAEAVEHYSNVLNVKFTEPTDSVLCIENPQTQQTESIKVTAAYSRARSPYLELIQANGNGIFSEKNAGRILYFGIWEPDIEGRIQKLKQQGIGIEALISSECGKTANAIITAPDKMGIRMEYLSTSLRLPTEAWVLTGKYPLSQRM
>NZ_CP021106.3|WP_051048877.1|1837309_1837906_-|CDP-alcohol-phosphatidyltransferase-family-protein
MIRGFQLADFFTLGNAGCGVAAVLFAMLYIDTRSTTHFYSSTGMMAGAFVFDVLDGRIARWRHQHSALGRELDSLADILSFGIAPAALGFAAGLRGGWDWVALIYFVCCGVSRLARFNVTAESLSAGADKVAYFEGTPIPTSIVLTAVLALSAWMGRLGENLYWGVWTIGPWELHPLALLFVLSGSLMISKTLRIPKI
>NZ_CP021106.3|WP_004174196.1|1838116_1838554_+|hypothetical-protein
MKAFKYCVLLQEVMMQAVILFFTFAIFSGSAFAADWKLIGDDIEQGVKTFIDKSAISKKGTAVRLWSAIDYESPRSVDGKEQLSTKSLDEYDCQNRQYRTLAFYWYSRHRGEGDLVYSETAPGTMMPVIPGSVGEIAWKIACGKE
>NZ_CP021106.3|WP_151898893.1|1839058_1839256_-|hypothetical-protein
MPRHPTGTPATALLMHEFSHSCDRVFEQPRAEAREAAAFTYWRTRFPGTSGWTRTETNGTGCGLD
>NZ_CP021106.3|WP_040851069.1|1839556_1839982_+|hypothetical-protein
MRLQVTYIQLLCALFYFNNANAQATPDYQCRVERIDTASTAPSSSRKYQEEEHVGKQFTVERRTGLMAGVLKNSYATKPIVIDHGSTENSFKVISTMRRDEGAGLGSSIYALTINEFEQSPKKSFIFLRNDFVYFGYCEHF
>NZ_CP021106.3|WP_081607208.1|1840561_1843057_+|DEAD/DEAH-box-helicase
MRVRKPDSGVAINPAAGVNLNDLVGLDRGVDVVRAEPGDLNSLLPALKRRHARRITGELLIPARAASYAAFPAGLDARIADGLMQRGITQLYSHQREAWDRITRSEHVVIVTPTASGKTLCYNLPVIQAAIQERSKALYLFPTKALAQDQVTELLELNQAGNLGVRAYTFDGDTPGDARKAVRTHGDIVISNPDMLHQGILPHHTKWAQFFENLKFVVIDEMHTYRGVFGSHVANVIRRLDRICRFYGVKPVYIFCSATIANPGQLAGGLLGAPVAVIDQSGAPAGEKHLLFWNPPMINPDLGLRASARSQTTRIARSAIKAGLKTIVFANTRLMVEVLTKYLKDVFDNDPRQAPRIAAYRGGYLPTERRGTATRLRGGQLDCVVATNALELGVDIGGLDVCLLNGFPGTIAGTWQRLGRAGRRNRPALGVLIATSDPLDQYIVRNPEFFTSASPEHGCIDPEQLLILMDHIRCAAFELPFQDNERFGKEPLAEMLSYLEAQGVLHHEGQRWHWMADSYPANSVSLRSVADGNFVVVDVTDGKQDVIAEADYSTAALTLYEGAIYLIQASPWQVEKLDWEGRKAFVTKTRADYYTDAIDFTRLKILDCFEEDRQSNGLCGRGEVHLVRRVAGYKKIRYYSHENVGYGKVNLPDHEMHTTAVWWQVSPDALEAAFPARWQALDGFLGAAYALHHVAALLTLSERHDLGRAVGDGEGIWFASVGQNGRGNPQTISGETVEIDDQQFTPTVFLYDNFAGGIGLSAPLFDLRHEIVARTIALIRDCGCQSGCPSCVGPILASDESRGHAPKQAALTVLGLLSPNGQARTLDMEAS
>NZ_CP021106.3|WP_004174209.1|1843053_1844400_+|ribonuclease-H-like-domain-containing-protein
MTLAERLALLKGKHPTPDPEPAAKPQSSRIPLIPLNVRLQRLSGGNGDSRNAVNRASRTKCGDAEVAKHLRGEVIAPGLIQIDQAIPLASRHGRIAFSALTGISLAALGMSHDARLDGLLFLDTETTGLAGGTGTLPFMVCLARIQGDCLQLGQWVLTGFAGEAALLETISGWIEPAAHLVSYNGKSFDVPLLATRYRLARQTDPFTGNAAGKSTGAGASKGHIDLLHLTRRAYGHGWEDCRLQTAEQRLLGFIREDDFPSHLIPQAWMDFVRGGRVEPLYAIAEHNQRDVLSLAALLAMVARTYTEPGHEAVNALKVAQVHADRGDVQHAIDHLTGAWGVLDEAALLFLAKLHRHQRQDGRAVAIWMHLRENSRARGVEALAKYHEHVTQELEAALELAEELLRLEPAVNIHIRRQARLRQKLGKFNPGKRKRKERVILRAGCQGAD
>NZ_CP021106.3|WP_051048879.1|1844436_1845090_-|hypothetical-protein
MTGDRIETGSPSQNALRGKTAYMKKIRLLWFACLLALVPMNPAWSFDGGGDNGGGDEGGSDDGGEDPDEGETHNGADTPDGQDHHGSGHHQDHRAGHSHHDGWGPGPGLGLLGFGPGFGGFGATGFMQPFYPFPYYAYPSAMARTAPPVYLQQQNAGQPAPDSQTGFWHYCRAPEGYYPEVKDCPDGWQQVAPQPAPQPPPEVIPEATLRLPQDNQG
>NZ_CP021106.3|WP_004174212.1|1845314_1845740_+|hypothetical-protein
MKTQSGNIFAALSIVCLLASLSPSVTAAQSVDTPEIRAAAQNATTRSEHEAVAKHYEDAATQMQAKMEEQKELLEHYEDKSYLYGRRAQDLQSHTAALVRHYEKAVKANIREAALHRQMASKLEENHAVSGTQTASAEDGL
>NZ_CP021106.3|WP_004174214.1|1845981_1848825_-|cation-translocating-P-type-ATPase
MTPVTLQQDPVTSYRRPVDEVLAAFDTDAQHGLSEDGARARLEKYGRNELAAKKPLPGWRKFLAQFQNVLVIMLLVATAISAGLWWYERDAALPYEAIAIFAVVLLNAIMGYIQEARAEEAVAALRQMSAAHASVIRNGARRSIPAAELVPGDIIHIEPGDTIPADARLIHSATLQTAEAALTGESLPVSKDTLPIAEEATLGDRHNMIFSGTAATFGQGRGVVVATGMQTQMGHIAGMLEETPAETTPLQKELARVGKLLGIIVIAIAVVMIATIILVEHVTGFAAIFDVLILGVALAVAAIPEGLPAVVTAVLSLGVQRMAHRNAIVRNLPAVETLGSATVIASDKTGTLTKNEMTVRAVVTASGRVSIGGEGYAPEGEVRREAGRNKDGAMTDNETAIIAGPLRIELERALAVADRANNAVLQKHDGHWTVQGDPTEGALIVAARKAGLEAEALNARFERVGEIPFSSERKLMTTLHTDAHKQEHLLVFTKGAPDLLLGRCTRELVGEETKPLTADRRVEILQTNEQLAGEALRTLGVAFRYLPADAPEADEVDERVEQDLVFAGLIGMIDPPRAEAREAVARAQMAGIRPIMITGDHPVTATVIAAQLGISGNKRVLSGTGIEKLSDEALDQAVKEVSVYARVNPEHKLRIVKALQRGGAIVAMTGDGVNDAPALKTADIGIAMGVTGMDVSKEAADMVLADDNFASIVAAVEEGRSIFSNIRKFLRYLLSSNIGEVLTMFFGVLLADTIGLKAEEQAVVLPLLATQLLWINLATDGAPALALGVDPPDAQAMRKAPRPQGEGVITHQMWSGIVSVGVVMAAGTLLVLDASLPGGLIEGSGSVRYAQTMAFTTIVFFSLFTVFNARSDDQSAFVGLFSNKWLWGAVLLALLLQIAVIYVPFLQQAFSTVSLGLEDWLLCTLVASSVLWLSELRKLITRIKSRD
>NZ_CP021106.3|WP_151898894.1|1848994_1849171_+|hypothetical-protein
MLSCAPDSGFPSTSGVLVHELSHFVLARATKNPDIYGPNAANSLALSNPQRAKSNCKK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP021106_1	1.24\|1836609\|33\|NZ_CP021106\|CRISPRCasFinder,CRT,PILER-CR	1836609-1836641	33	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	1397579-1397611	8	0.758
NZ_CP021106_1	1.24\|1836609\|33\|NZ_CP021106\|CRISPRCasFinder,CRT,PILER-CR	1836609-1836641	33	NZ_CP032054	Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence	51401-51433	8	0.758
NZ_CP021106_1	1.24\|1836609\|33\|NZ_CP021106\|CRISPRCasFinder,CRT,PILER-CR	1836609-1836641	33	NZ_CP016560	Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence	656565-656597	8	0.758
NZ_CP021106_1	1.11\|1835816\|33\|NZ_CP021106\|CRISPRCasFinder,CRT,PILER-CR	1835816-1835848	33	NZ_CP032703	Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence	292788-292820	9	0.727
NZ_CP021106_1	1.26\|1836731\|33\|NZ_CP021106\|CRISPRCasFinder,CRT,PILER-CR	1836731-1836763	33	MK448228	Klebsiella phage ST15-VIM1phi2.1, complete genome	20263-20295	9	0.727
NZ_CP021106_1	1.26\|1836731\|33\|NZ_CP021106\|CRISPRCasFinder,CRT,PILER-CR	1836731-1836763	33	MK448236	Klebsiella phage ST899-OXA48phi17.1, complete genome	12578-12610	9	0.727
NZ_CP021106_1	1.24\|1836609\|33\|NZ_CP021106\|CRISPRCasFinder,CRT,PILER-CR	1836609-1836641	33	NZ_CP013069	Pannonibacter phragmitetus strain 31801 plasmid p.p-1, complete sequence	32833-32865	10	0.697
NZ_CP021106_1	1.24\|1836609\|33\|NZ_CP021106\|CRISPRCasFinder,CRT,PILER-CR	1836609-1836641	33	NZ_CP032313	Pannonibacter phragmitetus BB plasmid p.BB_1, complete sequence	229729-229761	10	0.697
NZ_CP021106_1	1.24\|1836609\|33\|NZ_CP021106\|CRISPRCasFinder,CRT,PILER-CR	1836609-1836641	33	NZ_CP032054	Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence	1000179-1000211	10	0.697
NZ_CP021106_1	1.24\|1836609\|33\|NZ_CP021106\|CRISPRCasFinder,CRT,PILER-CR	1836609-1836641	33	NZ_CP054046	Yersinia massiliensis strain 2011N-4075 plasmid unnamed1, complete sequence	48254-48286	10	0.697

1. spacer 1.24|1836609|33|NZ_CP021106|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 8, identity: 0.758

--cgtcaggcgggagtccggcaggggcggcggaga	CRISPR spacer
tccgcc--ccggcagtccggcacgggcggcggacc	Protospacer
  **.*   *** ********* **********

2. spacer 1.24|1836609|33|NZ_CP021106|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032054 (Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence) position: , mismatch: 8, identity: 0.758

--cgtcaggcgggagtccggcaggggcggcggaga	CRISPR spacer
tccgcc--ccggcagtccggcacgggcggcggacc	Protospacer
  **.*   *** ********* **********

3. spacer 1.24|1836609|33|NZ_CP021106|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016560 (Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence) position: , mismatch: 8, identity: 0.758

--cgtcaggcgggagtccggcaggggcggcggaga	CRISPR spacer
tccgcc--ccggcagtccggcacgggcggcggacc	Protospacer
  **.*   *** ********* **********

4. spacer 1.11|1835816|33|NZ_CP021106|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032703 (Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

catataagagctgccctttgaggcggctttttt	CRISPR spacer
ctctttccggccgccctttgtggcggctttttt	Protospacer
* . *   .**.******** ************

5. spacer 1.26|1836731|33|NZ_CP021106|CRISPRCasFinder,CRT,PILER-CR matches to MK448228 (Klebsiella phage ST15-VIM1phi2.1, complete genome) position: , mismatch: 9, identity: 0.727

ctggttcgtcttggtcaggttaaccgatgtcgt	CRISPR spacer
ctggttcgtcttggtcaggttgacttccatttc	Protospacer
*********************.**.  ..*. .

6. spacer 1.26|1836731|33|NZ_CP021106|CRISPRCasFinder,CRT,PILER-CR matches to MK448236 (Klebsiella phage ST899-OXA48phi17.1, complete genome) position: , mismatch: 9, identity: 0.727

ctggttcgtcttggtcaggttaaccgatgtcgt	CRISPR spacer
ctggttcgtcttggtcaggttgacttccatttc	Protospacer
*********************.**.  ..*. .

7. spacer 1.24|1836609|33|NZ_CP021106|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013069 (Pannonibacter phragmitetus strain 31801 plasmid p.p-1, complete sequence) position: , mismatch: 10, identity: 0.697

cgtcaggcgggagtccggcaggggcggcggaga	CRISPR spacer
ctcaaggcgggtgtccggcacgggcggcaccac	Protospacer
* . ******* ******** *******.  .

8. spacer 1.24|1836609|33|NZ_CP021106|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032313 (Pannonibacter phragmitetus BB plasmid p.BB_1, complete sequence) position: , mismatch: 10, identity: 0.697

cgtcaggcgggagtccggcaggggcggcggaga	CRISPR spacer
ctcaaggcgggtgtccggcacgggcggcaccac	Protospacer
* . ******* ******** *******.  .

9. spacer 1.24|1836609|33|NZ_CP021106|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032054 (Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence) position: , mismatch: 10, identity: 0.697

cgtcaggcgggagtccggcaggggcggcggaga	CRISPR spacer
gtccgcccggcagtccggcacgggcggcggacc	Protospacer
  .*.  *** ********* **********

10. spacer 1.24|1836609|33|NZ_CP021106|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054046 (Yersinia massiliensis strain 2011N-4075 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.697

cgtcaggcgggagtccggcaggggcggcggaga	CRISPR spacer
acctgcgcggcagtccggcagcggcggcggcgt	Protospacer
  ... **** ********** ******** *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2075786 : 2108936

Stenotrophomonas_phage(25.0%)

integrase,plate

attL 2075605:2075623|attR 2097794:2097812

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2075605:2075623	attL	NA	NA	NA	NA
WP_004177989.1\|2075786_2076986_+\|integrase	tyrosine-type recombinase/integrase	B7SYF8	Stenotrophomonas_phage	7.9e-111	52.2
WP_040852329.1\|2077422_2077704_+	hypothetical protein	NA	NA	NA	NA
WP_151898914.1\|2077816_2078662_+	hypothetical protein	NA	NA	NA	NA
WP_004177982.1\|2078761_2078986_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_051049009.1\|2078985_2079405_+	hypothetical protein	NA	NA	NA	NA
WP_004177979.1\|2079401_2080949_+	DUF3631 domain-containing protein	NA	NA	NA	NA
WP_004177978.1\|2080945_2081395_+	hypothetical protein	NA	NA	NA	NA
WP_004177976.1\|2081449_2081695_+	hypothetical protein	NA	NA	NA	NA
WP_151898915.1\|2081704_2082667_+	hypothetical protein	A9YX04	Burkholderia_phage	6.7e-52	44.1
WP_151898916.1\|2082685_2083255_+	hypothetical protein	NA	NA	NA	NA
WP_161493787.1\|2083251_2083419_+	hypothetical protein	NA	NA	NA	NA
WP_151898917.1\|2084203_2084653_+	hypothetical protein	NA	NA	NA	NA
WP_151899025.1\|2084968_2086297_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_040852323.1\|2086363_2086999_+	hypothetical protein	NA	NA	NA	NA
WP_040852322.1\|2087186_2087939_-	hypothetical protein	NA	NA	NA	NA
WP_040852318.1\|2088187_2089045_-	hypothetical protein	NA	NA	NA	NA
WP_040852315.1\|2089414_2089996_+	recombinase family protein	M9Q1K0	Clostridium_phage	2.3e-31	44.1
WP_004177962.1\|2092192_2093266_+\|integrase	site-specific integrase	W5R968	Staphylococcus_phage	1.7e-08	24.3
WP_004177960.1\|2093382_2095011_+	hypothetical protein	NA	NA	NA	NA
WP_151898918.1\|2095810_2096188_+	hypothetical protein	NA	NA	NA	NA
WP_040852306.1\|2096568_2097495_+	restriction endonuclease	NA	NA	NA	NA
WP_151898919.1\|2099250_2099817_+	hypothetical protein	NA	NA	NA	NA
2097794:2097812	attR	NA	NA	NA	NA
WP_040852305.1\|2100012_2101035_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_004177947.1\|2101215_2101728_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004177946.1\|2101767_2103261_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004177943.1\|2103355_2103838_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004177942.1\|2104036_2104522_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_004177941.1\|2104552_2105398_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_004177939.1\|2105390_2105906_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004177938.1\|2106054_2107929_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004177937.1\|2107904_2108936_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_2

2297312 : 2305251

Burkholderia_virus(25.0%)

integrase,transposase

attL 2297414:2297426|attR 2303541:2303553

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040852218.1\|2297312_2298170_-	ExeA family protein	A4JWN1	Burkholderia_virus	1.3e-75	52.5
2297414:2297426	attL	NA	NA	NA	NA
WP_004177720.1\|2298677_2300453_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6QIE0	Burkholderia_phage	3.6e-168	54.3
WP_004177718.1\|2300449_2301454_-	hypothetical protein	J9RW58	Pseudomonas_phage	3.3e-41	36.0
WP_004177716.1\|2301466_2301781_-	hypothetical protein	NA	NA	NA	NA
WP_004177714.1\|2301780_2302257_-	hypothetical protein	A4JWN5	Burkholderia_virus	7.2e-31	40.4
WP_004177712.1\|2302370_2302604_+	hypothetical protein	NA	NA	NA	NA
WP_004177711.1\|2302672_2302870_-	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	3.7e-18	77.8
WP_004177709.1\|2302960_2303398_+	helix-turn-helix transcriptional regulator	K4NXA8	Burkholderia_phage	2.9e-10	36.1
WP_040852194.1\|2303459_2303999_+	N-acetylmuramoyl-L-alanine amidase	F6MIJ9	Haemophilus_phage	1.1e-38	47.1
2303541:2303553	attR	NA	NA	NA	NA
WP_161493791.1\|2304049_2304211_+	hypothetical protein	NA	NA	NA	NA
WP_004177706.1\|2304207_2304642_+	hypothetical protein	NA	NA	NA	NA
WP_004177705.1\|2304744_2305251_+	hypothetical protein	A0A0H4ITF4	Stenotrophomonas_phage	9.7e-10	35.1

DBSCAN-SWA_3

2309331 : 2323503

Pseudomonas_phage(25.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004177688.1\|2309331_2309898_+	DUF3486 family protein	A4JWJ3	Burkholderia_virus	7.7e-40	51.1
WP_004177686.1\|2309894_2311421_+	hypothetical protein	A4JWJ4	Burkholderia_virus	2.2e-145	56.0
WP_004177684.1\|2311422_2312934_+	DUF935 family protein	G8GWE1	Rhodobacter_phage	1.2e-87	50.1
WP_004177683.1\|2313054_2313798_+	Phage (Mu-like) virion morphogenesis protein	J9STS2	Pseudomonas_phage	4.4e-59	50.9
WP_004177682.1\|2313797_2314346_+	phage virion morphogenesis protein	F8TVC6	EBPR_siphovirus	2.9e-12	33.1
WP_004177680.1\|2314405_2315527_+	hypothetical protein	Q6QIB7	Burkholderia_phage	4.1e-77	47.9
WP_004177679.1\|2315703_2316075_+	DUF2190 family protein	A0A0S4L3C3	Pseudomonas_phage	3.9e-16	46.2
WP_040852203.1\|2316261_2317206_+	hypothetical protein	A0A0S4L2T7	Pseudomonas_phage	2.6e-85	55.1
WP_085922021.1\|2317295_2317613_+	hypothetical protein	NA	NA	NA	NA
WP_004181391.1\|2317621_2318065_+	DUF1320 domain-containing protein	A0A0M3VI88	Ralstonia_phage	1.9e-17	41.6
WP_004181390.1\|2318064_2318508_+	hypothetical protein	NA	NA	NA	NA
WP_004181389.1\|2318504_2318702_+	hypothetical protein	NA	NA	NA	NA
WP_004181387.1\|2318701_2319628_+	hypothetical protein	G8CLB2	Synechococcus_phage	1.4e-62	40.6
WP_004181385.1\|2319657_2319993_+	hypothetical protein	D6PGA9	uncultured_phage	5.4e-09	35.5
WP_004181383.1\|2320055_2320349_+	DUF1799 domain-containing protein	NA	NA	NA	NA
WP_004181381.1\|2320338_2323503_+\|tail	phage tail length tape measure family protein	A0A0K1Y6G1	Rhodobacter_phage	1.2e-20	32.0

DBSCAN-SWA_4

3123132 : 3136054

Bacillus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085922070.1\|3123132_3125952_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	5.9e-306	56.5
WP_004174359.1\|3125971_3127294_+	glycerate kinase	NA	NA	NA	NA
WP_040851103.1\|3127443_3128154_+	phosphate regulon transcriptional regulator PhoB	W8CYM9	Bacillus_phage	3.4e-37	38.5
WP_004174361.1\|3128191_3129499_+	phosphate regulon sensor histidine kinase PhoR	W8CYF6	Bacillus_phage	4.5e-35	37.8
WP_004174362.1\|3129765_3130323_+	NUDIX hydrolase	E5EYY7	Acinetobacter_phage	2.9e-07	36.8
WP_004174364.1\|3130680_3131787_-	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	3.4e-23	33.0
WP_004174365.1\|3131922_3133854_-	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.7e-147	49.4
WP_004174367.1\|3133936_3134509_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_004174369.1\|3134677_3136054_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	2.6e-110	46.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage