CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_020912	Pseudomonas aeruginosa B136-33, complete sequence	1 crisprs	csa3,DEDDh,cas3,DinG,WYL,RT	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_020912_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020912_1

333593-333706

Orphan

Consensus_repeat	Method
GGCCAAAGAACTGGAGGGCAAGGTATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020912_1

>merge|NC_020912|1|333593-333706|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGAGCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGTGGCCAAAGAACTGGAGGGCAAGGTATGA

>NC_020912|1|1|333593-333706|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGA	GCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGT
GGCCAAAGAACTGGAGGGCAAGGTATGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_020912.1\|WP_015502196.1\|323526_324903_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NC_020912.1\|WP_073656392.1\|341336_342035_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|226274
NC_020912.1\|WP_023108702.1\|338886_339498_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239267
NC_020912.1\|WP_003084327.1\|342056_342611_-\|hypothetical-protein	unknown	unknown	unknown
NC_020912.1\|WP_015502198.1\|334749_337137_-\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|225241
NC_020912.1\|WP_003110711.1\|337247_338300_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NC_020912.1\|WP_015502195.1\|321483_322149_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_020912.1\|WP_003084285.1\|325181_325934_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781
NC_020912.1\|WP_003084299.1\|328883_329987_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NC_020912.1\|WP_003084333.1\|342876_343371_+\|DUF523-domain-containing-protein	unknown	unknown	gnl\|CDD\|224597
NC_020912.1\|WP_003084273.1\|322209_323271_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NC_020912.1\|WP_003110710.1\|338278_338782_-\|transcriptional-regulator	unknown	unknown	unknown
NC_020912.1\|WP_003084320.1\|340535_341288_-\|hypothetical-protein	unknown	unknown	unknown
NC_020912.1\|WP_003084301.1\|330405_331503_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NC_020912.1\|WP_003084339.1\|343375_344068_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NC_020912.1\|WP_003084297.1\|327397_328768_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NC_020912.1\|WP_073656393.1\|339496_340516_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NC_020912.1\|WP_003084303.1\|331557_332712_+\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NC_020912.1\|WP_015502197.1\|325974_327333_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NC_020912.1\|WP_003111119.1\|320442_321321_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553

Protein	Function_ID	Function_description	E-value
NC_020912.1\|WP_015502196.1\|323526_324903_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.15404e-159
NC_020912.1\|WP_003084339.1\|343375_344068_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.29364e-79
NC_020912.1\|WP_023108702.1\|338886_339498_-\|hypothetical-protein	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	0.00631985
NC_020912.1\|WP_015502198.1\|334749_337137_-\|penicillin-acylase-family-protein	gnl\|CDD\|225241	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only].	0
NC_020912.1\|WP_003110711.1\|337247_338300_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.34355e-32
NC_020912.1\|WP_015502195.1\|321483_322149_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	7.32277e-09
NC_020912.1\|WP_003084285.1\|325181_325934_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	3.1783e-108
NC_020912.1\|WP_003084299.1\|328883_329987_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NC_020912.1\|WP_003084333.1\|342876_343371_+\|DUF523-domain-containing-protein	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	1.65548e-66
NC_020912.1\|WP_003084273.1\|322209_323271_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.13028e-163
NC_020912.1\|WP_073656392.1\|341336_342035_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	2.55626e-77
NC_020912.1\|WP_003084301.1\|330405_331503_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NC_020912.1\|WP_003084297.1\|327397_328768_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NC_020912.1\|WP_073656393.1\|339496_340516_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	4.97861e-56
NC_020912.1\|WP_003084303.1\|331557_332712_+\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NC_020912.1\|WP_015502197.1\|325974_327333_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	5.38526e-158
NC_020912.1\|WP_003111119.1\|320442_321321_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0

>NC_020912.1|WP_003084303.1|331557_332712_+|polyamine-ABC-transporter-ATP-binding-protein
MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS
>NC_020912.1|WP_003084301.1|330405_331503_+|polyamine-ABC-transporter-substrate-binding-protein
MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVIAKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIKTGK
>NC_020912.1|WP_003084299.1|328883_329987_+|polyamine-ABC-transporter-substrate-binding-protein
MMKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK
>NC_020912.1|WP_003084297.1|327397_328768_+|aspartate-aminotransferase-family-protein
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQTAAAVLA
>NC_020912.1|WP_015502197.1|325974_327333_+|glutamine-synthetase
MTTKLDQLTNWLKERKITEVECLISDLTGIARGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVIHDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPVGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGDALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGKNIFSNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERRNLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLLSV
>NC_020912.1|WP_003084285.1|325181_325934_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIPALGESIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASEPGTLHDSDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHVQPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWHPEWQVLTNPNYLAIFQAFGKACGKRAGQR
>NC_020912.1|WP_015502196.1|323526_324903_-|glutamine-synthetase
MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIERNSLNKVFEKGINLPASLFALDITGSTVESTGLGLDIGDADRICYPIPGTLSMEPWQKRPTAQLLMTMHELEGDPFFADPREVLRQVVARFTEMELTIVAAFELEFYLIDQENVNGRPQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQFEVNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKHGNNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGSQFYVPNAPSWGLDNRTVALRVPTGSPDAVRLEHRVAGADANPYLLLASVLAGVHHGLTNQVEPGAPIEGNSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NC_020912.1|WP_003084273.1|322209_323271_-|polyamine-ABC-transporter-substrate-binding-protein
MPRLSVLLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDTGIRVEYHTFATAEELDKALRSGEAIDVAVPSHDTLPALLKDNLLRPLDFTQLPNRSHLDRQLLSKLAAVDPDNRHAVPYLWGAVGLAINTPQAEAAYGGPLPNSWSLLFDASQSQRLKSCGISLLDAPDETLAILLNYQGRNLGRTAPSQVRRAAEALHGLRPNLRYVDSERYIADLEGGRLCLAMAWVGDALRAAKAGQPVSFEVPQEGSVLFIDNLVIPASAQHPRQAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLRPVVDEIWKAFRGASH
>NC_020912.1|WP_015502195.1|321483_322149_-|TetR/AcrR-family-transcriptional-regulator
MQPTSSTRKPRASSQARIAAILDAARGLLADEGIGGLTIYSVAERAEMPPSSVYHFFPSVPALLQGLTGEVHAAFRACLEQPVDHAGLRCWRDLSRIVEERMLAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALFERHFLLPPLPTDIEIFSLAMELGDRVYALSVQRHGIIDARLAEEGMRVFDAYLGLYLPPILEKRSKPLTGFISDLNR
>NC_020912.1|WP_003111119.1|320442_321321_-|N-carbamoylputrescine-amidase
MTRNVTVAATQMACSWDRPANIARAEKLVRQAAARGAQIILIQELFETPYFCQKPNPDYLQLATTVEENAAIAHFQALARELQVVLPISFFERAGRARFNSIAVIDADGGNLGVYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYARIGVGICWDQWFPESARSMALLGAELLFYPTAIGSEPHDASISSRDHWQRVQQGHAGANLMPLVASNRIGREEQDGYDITFYGSSFIADPFGEKVEELNRTEEGILVHTFDLDALERTRSAWGVFRDRRPNLYGPLKTLDGSLES
>NC_020912.1|WP_015502198.1|334749_337137_-|penicillin-acylase-family-protein
MKRTLTVIAVAVAAAAAGGAWYLHAKQPLRNGSLALAHLQAPVDVRYDERGVPHLYAQNQTDLYRALGYVHAQDRLFQMEMLRRLARGELAEVLGPKLVDTDRLFRTLRIRDHAAEYSARQDKQSQPWKVLEAYLDGVNQFQENNPAPLEFDLLGIPRRPFTPEDTLSIAGYMAYSFAAAFRTEPVLTYIRDELGSDYLRIFDLDWHPQGVLTPSGALGAGDWKDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRTASGKPLLAGDPHIRFAAPAVWYEAQLSAPGFELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLVAEKVNPDNPNQVWYQGKWVDLQSEEQEIAVKGAAPVKLTLRRSPHGPIVNDALGASSGKTPIAMWWAFLETENPVLDAFYQLNRADTLAKARAAASKIHSPGLNLVWANAAGDIGWGASAALPKRPEGVNPSFILDGSKGEADKSGFYPFADNPQEENPARGYIVSANFQPVPANGRPIPGYYNLADRGQWLDTQLADRGTKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREVVDDAEGKRVVEQLAAWNGDYPVDSTAATLFNQLLFQIAEGALHDELGDAFFDSLIATRAIDSALPRLAGDADSPWWDDRRTERRETRADIVRAAWNASLAHLRGTLGNDPSGWLWGKAHTLTHEHALGQQALLKRLLNVGPFAAPGTHEVPNNLSAKIGPAPWAVTYGPSTRRLVDFADPTHSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLEPKR
>NC_020912.1|WP_003110711.1|337247_338300_+|AraC-family-transcriptional-regulator
MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPLPPPTLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLRQQIECLMLLFLKLLALISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNANPDMHGVLTRHAEEQTRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALAAGGASFRQVRDEVRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQYRARLAKREEGYSTSGT
>NC_020912.1|WP_003110710.1|338278_338782_-|transcriptional-regulator
MSLRPTLALLALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIYNTYRTESDKLSKETLRLLLDYAQAYNSGNVSDDQASKLIERVDDLQEDRLELRDKYVKRIAKNVSPKRAMRFLQIEIQLDAIATLEIGRQVPLVE
>NC_020912.1|WP_023108702.1|338886_339498_-|hypothetical-protein
MASLAPVFRVNAMTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRYIRPFSEQTTLFSGDSLRLPAELAGPGPIRLVHFWDPACPCNVGNQQHLGELIERFAGKGVEFHVLQKPGSQGRLPDNLAALRPLAGLPGSEQLPASPAVAIWNRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWTPEKG
>NC_020912.1|WP_073656393.1|339496_340516_+|alpha/beta-hydrolase
MCSRAAEYPWVSPVARPRIDCSPEPPMSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLRSHHPRLQARLGSMAVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQAAELDLAAPWHLCGQSTGGAILLDYLLHGGERPELGETILLAPLVRPRAWGWSKLSYRLLSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGESDETVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLSDALGA
>NC_020912.1|WP_003084320.1|340535_341288_-|hypothetical-protein
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAAQKRYQDKLPPALYQTLVDNSNRRFAPAEVDQRALNGLRENLPDSASPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLPAREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELTQYVNFAESPAGRSYYQAALAALKAGLAVDQAVAP
>NC_020912.1|WP_073656392.1|341336_342035_+|2OG-Fe(II)-oxygenase
MGRYCRHAADRLSRHRGGTLQWTMHINVNHPLLHRIVDELVDQGWSHQSIFMPERLTTRLAEECRTRAVAGDLTPAAIGRGDGQVIREGIRGDLTQWLEPGESEACDEYLGVMDNLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLTGWFRRRNESLLQLS
>NC_020912.1|WP_003084327.1|342056_342611_-|hypothetical-protein
MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGQAGISLRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCVKAGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLYIGDNSIGRIELRDITDLRGTIKVWGH
>NC_020912.1|WP_003084333.1|342876_343371_+|DUF523-domain-containing-protein
MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEVAGGLPTPRPPAEIPGGQGGEVLDRLNRVFTVDGEDVSEAFLLGAEAAVELVRRHDIRMAVLKARSPSCGNLENYDGRFNGSRVAGEGVTAAALKRMGVLVFNEDELDRAAVCLAGLDAGG
>NC_020912.1|WP_003084339.1|343375_344068_-|amino-acid-ABC-transporter-permease
MNSLQKLLEWLANLVELLGMAWPFLLQGAMYTVLFAAVSMVLGLILGFSVAVVRVTKVPVVSQIAAVYVSAFRGTPLLVQIFVLYYGLPSVGIEFTPVTAGILALTLNVAAYLSESMRGAILGIDKGQWEAGLSVGLTWGQTLWNIITPQALRLAVPSLSNSLISLIKDTSLISVITVTELMLATKEVIAETFQPLPLYLAAAGIYWLLSALFERVQKALENRLTAPLRR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

625458 : 678129

uncultured_Caudovirales_phage(28.0%)

plate,tail,holin,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003109020.1\|625458_626484_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.7e-109	58.1
WP_003085061.1\|626562_627132_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003099587.1\|627215_627569_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_003085067.1\|627559_628102_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_003117955.1\|628074_629307_-	multifunctional CCA addition/repair protein	A0A076G5T8	Escherichia_phage	2.0e-77	43.3
WP_003085071.1\|629350_629857_-	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_003099581.1\|629951_631505_-	SpoVR family protein	NA	NA	NA	NA
WP_003099579.1\|631501_632773_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	4.2e-09	37.2
WP_003085078.1\|632873_634796_-	PrkA family serine protein kinase	NA	NA	NA	NA
WP_015502273.1\|635074_635407_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_003113213.1\|635450_636302_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	1.1e-08	33.3
WP_015502274.1\|636301_636682_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_003161932.1\|636718_637525_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_003109023.1\|637640_638627_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_003109024.1\|638623_639916_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_003085092.1\|639896_642698_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_003129200.1\|642824_643841_+	phosphotransferase	NA	NA	NA	NA
WP_003117959.1\|643837_644512_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_003099547.1\|644513_645272_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_015502275.1\|645272_646340_-	alpha/beta hydrolase family protein	NA	NA	NA	NA
WP_003129201.1\|646491_648885_+	sensor histidine kinase	NA	NA	NA	NA
WP_003085103.1\|648930_649563_+	response regulator transcription factor	NA	NA	NA	NA
WP_003085106.1\|649691_650726_+	polyamine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003085109.1\|650959_652069_+	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.8e-28	34.4
WP_003129202.1\|652124_653171_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015502276.1\|653285_654533_+	ABC transporter permease	NA	NA	NA	NA
WP_003085119.1\|654638_655469_+	ABC transporter permease	NA	NA	NA	NA
WP_003129204.1\|655592_656267_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_003085124.1\|656266_657085_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_015502277.1\|657157_658636_+	anthranilate synthase component I	NA	NA	NA	NA
WP_003085128.1\|658821_659136_-	pyocin activator PrtN family protein	NA	NA	NA	NA
WP_003085129.1\|659235_660006_-	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	6.1e-72	59.0
WP_003085132.1\|660463_660664_+	repressor PtrB	W6ATC1	Enterobacter_phage	3.7e-05	58.3
WP_003085135.1\|660711_661071_+	hypothetical protein	NA	NA	NA	NA
WP_003137382.1\|661433_661883_+\|holin	holin	B5TK61	Pseudomonas_phage	5.0e-26	53.3
WP_015502278.1\|661904_662420_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	1.1e-32	43.4
WP_015502279.1\|662416_662974_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	4.6e-45	71.1
WP_003085143.1\|663126_663453_+	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	3.2e-30	60.2
WP_015502280.1\|663449_664337_+	bacteriophage protein	S4TNY7	Salmonella_phage	7.0e-88	59.5
WP_010895511.1\|664329_664863_+\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	3.0e-62	64.6
WP_015502281.1\|664864_666973_+\|tail	phage tail protein	Q9ZXK6	Pseudomonas_virus	6.5e-225	52.3
WP_015502282.1\|666981_667422_+\|tail	tail fiber assembly protein	NA	NA	NA	NA
WP_003109051.1\|667464_668625_+\|tail	phage tail sheath family protein	Q38068	Phage_PS17	2.7e-188	83.4
WP_003085175.1\|668637_669141_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	8.0e-65	73.5
WP_003085178.1\|669155_669500_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_015502284.1\|669669_671907_+\|tail	tail length determinator protein	NA	NA	NA	NA
WP_003085182.1\|671916_672789_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	3.9e-75	51.7
WP_003101635.1\|672763_672970_+\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.3e-18	64.2
WP_003109053.1\|673027_674017_+	phage late control D family protein	A0A2H4JBF6	uncultured_Caudovirales_phage	1.3e-106	55.8
WP_003117966.1\|674049_674679_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	4.2e-87	78.5
WP_003117967.1\|674675_675038_+	hypothetical protein	H2BDA0	Pseudomonas_phage	4.2e-15	47.9
WP_003118919.1\|675034_675292_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	8.3e-18	64.6
WP_003101640.1\|675639_676245_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	6.0e-75	65.8
WP_003085203.1\|676246_677296_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
WP_015502285.1\|677292_678129_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	5.6e-71	56.9

DBSCAN-SWA_2

1437386 : 1446415

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003098558.1\|1437386_1438022_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-40	52.3
WP_015502492.1\|1438067_1438961_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
WP_003113871.1\|1439065_1440070_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
WP_003092272.1\|1440496_1440820_-	ferredoxin family protein	NA	NA	NA	NA
WP_003122151.1\|1440886_1443454_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	2.4e-24	22.1
WP_003092265.1\|1443579_1444587_-	TolB family protein	NA	NA	NA	NA
WP_003092262.1\|1444734_1445241_+	CinA family protein	B5TK85	Pseudomonas_phage	8.1e-57	76.0
WP_003092260.1\|1445374_1446415_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5

DBSCAN-SWA_3

2555576 : 2562470

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003097631.1\|2555576_2556857_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.2e-98	45.4
WP_003108773.1\|2556858_2558256_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003097628.1\|2558260_2559235_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003108776.1\|2559322_2560306_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	9.3e-142	74.3
WP_003090393.1\|2560302_2560638_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	3.3e-38	69.4
WP_003090391.1\|2560634_2560940_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_003090389.1\|2560939_2561299_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.4e-34	61.7
WP_003090387.1\|2561295_2561691_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.7e-47	72.1
WP_003090386.1\|2561801_2562470_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1

DBSCAN-SWA_4

2867466 : 2906736

Planktothrix_phage(33.33%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003160325.1\|2867466_2868750_-\|tail	pyoverdine-tailoring periplasmic protein PvdN	NA	NA	NA	NA
WP_003103610.1\|2868772_2870119_-\|tail	pyoverdine-tailoring dipeptidase-like protein PvdM	NA	NA	NA	NA
WP_003139293.1\|2870334_2871969_+	pyoverdine maturation tyrosinase PvdP	NA	NA	NA	NA
WP_079275646.1\|2872017_2873442_-	pyoverdine export/recycling transporter outer membrane subunit OmpQ	NA	NA	NA	NA
WP_015502882.1\|2873447_2875439_-	pyoverdine export/recycling transporter ATP-binding/permease subunit PvdT	G9BWD6	Planktothrix_phage	4.1e-35	42.3
WP_003089547.1\|2875438_2876614_-	pyoverdine export/recycling transporter periplasmic adaptor subunit PvdR	NA	NA	NA	NA
WP_012614142.1\|2876714_2877710_-	FecR family protein	NA	NA	NA	NA
WP_003103620.1\|2877873_2878353_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_003114509.1\|2878485_2879817_+	L-ornithine N(5)-monooxygenase	NA	NA	NA	NA
WP_043541031.1\|2879939_2882228_+	acylase	NA	NA	NA	NA
WP_003089535.1\|2882408_2882732_+	transcriptional repressor	NA	NA	NA	NA
WP_003124571.1\|2882773_2883694_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003110905.1\|2883790_2884942_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_003089526.1\|2885008_2885251_-	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_003104944.1\|2885545_2885782_+	hypothetical protein	NA	NA	NA	NA
WP_003089521.1\|2886047_2886518_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_015502884.1\|2886514_2888830_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA
WP_015502885.1\|2889246_2890452_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003110901.1\|2890652_2891294_-	response regulator transcription factor	NA	NA	NA	NA
WP_003089513.1\|2891570_2891966_+	DUF4280 domain-containing protein	NA	NA	NA	NA
WP_003131532.1\|2891988_2892525_-	toxin-antitoxin system YwqK family antitoxin	NA	NA	NA	NA
WP_015502886.1\|2892535_2894542_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	7.7e-42	29.5
WP_003124577.1\|2894578_2895646_-	hypothetical protein	NA	NA	NA	NA
WP_003089506.1\|2895684_2896218_-	hypothetical protein	NA	NA	NA	NA
WP_003160315.1\|2896291_2898841_-	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	5.5e-77	29.4
WP_015502887.1\|2898842_2899859_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_015502888.1\|2899822_2901616_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_003089496.1\|2901599_2902025_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_003089495.1\|2902037_2902535_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_003089494.1\|2902608_2904093_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_003089493.1\|2904115_2904661_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_003104701.1\|2904868_2905345_+	hypothetical protein	NA	NA	NA	NA
WP_023094023.1\|2905404_2906736_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_5

4762873 : 4770220

Pseudomonas_phage(100.0%)

integrase

attL 4762518:4762547|attR 4773416:4773445

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4762518:4762547	attL	NA	NA	NA	NA
WP_015503464.1\|4762873_4763869_-\|integrase	tyrosine-type recombinase/integrase	Q56VN7	Pseudomonas_phage	1.6e-93	52.6
WP_015503465.1\|4763868_4765161_-	hypothetical protein	Q56VN8	Pseudomonas_phage	8.2e-247	94.0
WP_015503466.1\|4765418_4766681_-	zona occludens toxin	Q56VN9	Pseudomonas_phage	1.1e-115	55.0
WP_003159569.1\|4766682_4767033_-	DUF2523 domain-containing protein	Q56VP0	Pseudomonas_phage	5.5e-20	41.1
WP_043541117.1\|4767042_4767636_-	hypothetical protein	NA	NA	NA	NA
WP_033992911.1\|4768375_4768594_-	hypothetical protein	NA	NA	NA	NA
WP_003124954.1\|4768607_4768859_-	hypothetical protein	NA	NA	NA	NA
WP_003140508.1\|4768979_4769414_-	hypothetical protein	Q56VP5	Pseudomonas_phage	3.8e-63	100.0
WP_043541074.1\|4769929_4770220_-	DUF5447 family protein	Q56VP7	Pseudomonas_phage	1.9e-55	96.9
4773416:4773445	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage