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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_021064 Cutibacterium avidum 44067, complete sequence 3 crisprs cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,DEDDh,WYL,DinG 2 7 1 0

Results visualization

1. NC_021064
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_021064_1 1-386 TypeI-E NA
6 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_021064_2 2333940-2334028 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_021064_3 2525396-2526096 Orphan NA
11 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_021064_3 3.11|2526036|32|NC_021064|CRT 2526036-2526067 32 NC_021064.1 2526097-2526128 0 1.0
NC_021064_3 3.22|2526036|33|NC_021064|CRISPRCasFinder 2526036-2526068 33 NC_021064.1 2526097-2526129 0 1.0

1. spacer 3.11|2526036|32|NC_021064|CRT matches to position: 2526097-2526128, mismatch: 0, identity: 1.0

atctgggccgaaaacgacgaattgcgcgacag	CRISPR spacer
atctgggccgaaaacgacgaattgcgcgacag	Protospacer
********************************

2. spacer 3.22|2526036|33|NC_021064|CRISPRCasFinder matches to position: 2526097-2526129, mismatch: 0, identity: 1.0

atctgggccgaaaacgacgaattgcgcgacagc	CRISPR spacer
atctgggccgaaaacgacgaattgcgcgacagc	Protospacer
*********************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_021064_3 3.2|2525486|32|NC_021064|CRT 2525486-2525517 32 NZ_CP009112 Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence 63104-63135 6 0.812
NC_021064_3 3.2|2525486|32|NC_021064|CRT 2525486-2525517 32 NZ_CP009112 Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence 230545-230576 6 0.812
NC_021064_3 3.2|2525486|32|NC_021064|CRT 2525486-2525517 32 NZ_CP009112 Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence 243899-243930 6 0.812
NC_021064_3 3.2|2525486|32|NC_021064|CRT 2525486-2525517 32 MK878901 Gordonia phage HannahD, complete genome 1944-1975 7 0.781
NC_021064_3 3.2|2525486|32|NC_021064|CRT 2525486-2525517 32 MH479915 Gordonia phage GEazy, complete genome 1944-1975 7 0.781
NC_021064_3 3.13|2525486|33|NC_021064|PILER-CR,CRISPRCasFinder 2525486-2525518 33 MK878901 Gordonia phage HannahD, complete genome 1944-1976 7 0.788
NC_021064_3 3.13|2525486|33|NC_021064|PILER-CR,CRISPRCasFinder 2525486-2525518 33 MH479915 Gordonia phage GEazy, complete genome 1944-1976 7 0.788
NC_021064_3 3.2|2525486|32|NC_021064|CRT 2525486-2525517 32 NZ_CP011518 Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence 465933-465964 8 0.75
NC_021064_3 3.9|2525914|32|NC_021064|CRT 2525914-2525945 32 NZ_AP022849 Bosea sp. ANAM02 plasmid pANAM02, complete sequence 624475-624506 8 0.75
NC_021064_3 3.2|2525486|32|NC_021064|CRT 2525486-2525517 32 CP000622 Burkholderia phage phiE255, complete genome 31069-31100 9 0.719
NC_021064_3 3.2|2525486|32|NC_021064|CRT 2525486-2525517 32 NC_009237 Burkholderia phage phiE255 chromosome, complete genome 31069-31100 9 0.719
NC_021064_3 3.4|2525608|32|NC_021064|CRT 2525608-2525639 32 MN018232 Synechococcus phage S-B43, complete genome 111477-111508 9 0.719
NC_021064_3 3.4|2525608|32|NC_021064|CRT 2525608-2525639 32 MK799832 Synechococcus phage S-B05, complete genome 206686-206717 9 0.719
NC_021064_3 3.9|2525914|32|NC_021064|CRT 2525914-2525945 32 NC_017767 Thermus thermophilus HB8 plasmid pVV8, complete sequence 58477-58508 9 0.719
NC_021064_3 3.9|2525914|32|NC_021064|CRT 2525914-2525945 32 NC_008759 Polaromonas naphthalenivorans CJ2 plasmid pPNAP03, complete sequence 91575-91606 9 0.719
NC_021064_3 3.9|2525914|32|NC_021064|CRT 2525914-2525945 32 NC_020548 Azoarcus sp. KH32C plasmid pAZKH, complete sequence 711156-711187 9 0.719
NC_021064_3 3.9|2525914|32|NC_021064|CRT 2525914-2525945 32 MK002701 Halobacterium phage phiH variant phiH1, complete genome 52653-52684 9 0.719
NC_021064_3 3.20|2525914|33|NC_021064|PILER-CR,CRISPRCasFinder 2525914-2525946 33 NZ_AP022849 Bosea sp. ANAM02 plasmid pANAM02, complete sequence 624474-624506 9 0.727
NC_021064_3 3.1|2525425|32|NC_021064|CRT 2525425-2525456 32 NZ_CP017943 Phyllobacterium zundukense strain Tri-48 plasmid unnamed2, complete sequence 392863-392894 10 0.688
NC_021064_3 3.4|2525608|32|NC_021064|CRT 2525608-2525639 32 NZ_LR027520 Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence 10469-10500 10 0.688
NC_021064_3 3.9|2525914|32|NC_021064|CRT 2525914-2525945 32 NC_010625 Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence 1160453-1160484 10 0.688
NC_021064_3 3.9|2525914|32|NC_021064|CRT 2525914-2525945 32 FJ982340 Burkholderia phage KS9, complete genome 9839-9870 10 0.688
NC_021064_3 3.13|2525486|33|NC_021064|PILER-CR,CRISPRCasFinder 2525486-2525518 33 CP000622 Burkholderia phage phiE255, complete genome 31068-31100 10 0.697
NC_021064_3 3.13|2525486|33|NC_021064|PILER-CR,CRISPRCasFinder 2525486-2525518 33 NC_009237 Burkholderia phage phiE255 chromosome, complete genome 31068-31100 10 0.697
NC_021064_3 3.20|2525914|33|NC_021064|PILER-CR,CRISPRCasFinder 2525914-2525946 33 NC_017767 Thermus thermophilus HB8 plasmid pVV8, complete sequence 58476-58508 10 0.697
NC_021064_3 3.2|2525486|32|NC_021064|CRT 2525486-2525517 32 NZ_CP013105 Paraburkholderia caribensis strain MWAP64 plasmid 2, complete sequence 233556-233587 11 0.656
NC_021064_3 3.12|2525425|33|NC_021064|PILER-CR,CRISPRCasFinder 2525425-2525457 33 NZ_CP017943 Phyllobacterium zundukense strain Tri-48 plasmid unnamed2, complete sequence 392863-392895 11 0.667

1. spacer 3.2|2525486|32|NC_021064|CRT matches to NZ_CP009112 (Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence) position: , mismatch: 6, identity: 0.812

atgagctgaacaaactcaccgcgcgtcgcggc-	CRISPR spacer
acgagctgaacgaactcaccgcacggc-tggca	Protospacer
*.*********.**********.** * .*** 

2. spacer 3.2|2525486|32|NC_021064|CRT matches to NZ_CP009112 (Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence) position: , mismatch: 6, identity: 0.812

atgagctgaacaaactcaccgcgcgtcgcggc-	CRISPR spacer
acgagctgaacgaactcaccgcacggc-tggca	Protospacer
*.*********.**********.** * .*** 

3. spacer 3.2|2525486|32|NC_021064|CRT matches to NZ_CP009112 (Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence) position: , mismatch: 6, identity: 0.812

atgagctgaacaaactcaccgcgcgtcgcggc-	CRISPR spacer
acgagctgaacgaactcaccgcacggc-tggca	Protospacer
*.*********.**********.** * .*** 

4. spacer 3.2|2525486|32|NC_021064|CRT matches to MK878901 (Gordonia phage HannahD, complete genome) position: , mismatch: 7, identity: 0.781

atgagctgaacaaactcaccgcgcgtcgcggc	CRISPR spacer
gagggatcaacaatctcaccgctcgtcgcggc	Protospacer
. *.* * ***** ******** *********

5. spacer 3.2|2525486|32|NC_021064|CRT matches to MH479915 (Gordonia phage GEazy, complete genome) position: , mismatch: 7, identity: 0.781

atgagctgaacaaactcaccgcgcgtcgcggc	CRISPR spacer
gagggatcaacaatctcaccgctcgtcgcggc	Protospacer
. *.* * ***** ******** *********

6. spacer 3.13|2525486|33|NC_021064|PILER-CR,CRISPRCasFinder matches to MK878901 (Gordonia phage HannahD, complete genome) position: , mismatch: 7, identity: 0.788

atgagctgaacaaactcaccgcgcgtcgcggcc	CRISPR spacer
gagggatcaacaatctcaccgctcgtcgcggcc	Protospacer
. *.* * ***** ******** **********

7. spacer 3.13|2525486|33|NC_021064|PILER-CR,CRISPRCasFinder matches to MH479915 (Gordonia phage GEazy, complete genome) position: , mismatch: 7, identity: 0.788

atgagctgaacaaactcaccgcgcgtcgcggcc	CRISPR spacer
gagggatcaacaatctcaccgctcgtcgcggcc	Protospacer
. *.* * ***** ******** **********

8. spacer 3.2|2525486|32|NC_021064|CRT matches to NZ_CP011518 (Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence) position: , mismatch: 8, identity: 0.75

atgagctgaacaaactcaccgcgcgtcgcggc	CRISPR spacer
aacagcagaacaaactcaacgcgcgtgcccgg	Protospacer
*  *** *********** *******  * * 

9. spacer 3.9|2525914|32|NC_021064|CRT matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 8, identity: 0.75

tgttccggtggaggctcgccaggctgcgcaac	CRISPR spacer
tggaggtctggagcctcgccaagctgcgcaac	Protospacer
**      ***** *******.**********

10. spacer 3.2|2525486|32|NC_021064|CRT matches to CP000622 (Burkholderia phage phiE255, complete genome) position: , mismatch: 9, identity: 0.719

atgagctgaacaaactcaccgcgcgtcgcggc	CRISPR spacer
tcgggctgaacgaacgcaccgcgcgtcgaatg	Protospacer
 .*.*******.*** ************ .  

11. spacer 3.2|2525486|32|NC_021064|CRT matches to NC_009237 (Burkholderia phage phiE255 chromosome, complete genome) position: , mismatch: 9, identity: 0.719

atgagctgaacaaactcaccgcgcgtcgcggc	CRISPR spacer
tcgggctgaacgaacgcaccgcgcgtcgaatg	Protospacer
 .*.*******.*** ************ .  

12. spacer 3.4|2525608|32|NC_021064|CRT matches to MN018232 (Synechococcus phage S-B43, complete genome) position: , mismatch: 9, identity: 0.719

tcattctaaagggctgttgaaagacccgaatt	CRISPR spacer
tcattctaaaggtctcttgaaagtttcagaaa	Protospacer
************ ** ******* ..*..*  

13. spacer 3.4|2525608|32|NC_021064|CRT matches to MK799832 (Synechococcus phage S-B05, complete genome) position: , mismatch: 9, identity: 0.719

tcattctaaagggctgttgaaagacccgaatt	CRISPR spacer
tcattctaaaggtctcttgaaagtttcagaaa	Protospacer
************ ** ******* ..*..*  

14. spacer 3.9|2525914|32|NC_021064|CRT matches to NC_017767 (Thermus thermophilus HB8 plasmid pVV8, complete sequence) position: , mismatch: 9, identity: 0.719

tgttccggtggaggctcgccaggctgcgcaac	CRISPR spacer
ccttccggtggagcctcgccagcctgagggcg	Protospacer
. *********** ******** *** * .  

15. spacer 3.9|2525914|32|NC_021064|CRT matches to NC_008759 (Polaromonas naphthalenivorans CJ2 plasmid pPNAP03, complete sequence) position: , mismatch: 9, identity: 0.719

tgttccggtggaggctcgccaggctgcgcaac	CRISPR spacer
agacagcgtgaaggcacgccaggctgcgcagc	Protospacer
 * .   ***.**** **************.*

16. spacer 3.9|2525914|32|NC_021064|CRT matches to NC_020548 (Azoarcus sp. KH32C plasmid pAZKH, complete sequence) position: , mismatch: 9, identity: 0.719

tgttccggtggaggctcgccaggctgcgcaac	CRISPR spacer
gcagctggtcgaggctcgcgaggctgcgccgc	Protospacer
    *.*** ********* ********* .*

17. spacer 3.9|2525914|32|NC_021064|CRT matches to MK002701 (Halobacterium phage phiH variant phiH1, complete genome) position: , mismatch: 9, identity: 0.719

tgttccggtggaggctcgccaggctgcgcaac	CRISPR spacer
cgtcccggtcgaggctcgccaggccgacgccc	Protospacer
.**.***** **************.*     *

18. spacer 3.20|2525914|33|NC_021064|PILER-CR,CRISPRCasFinder matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 9, identity: 0.727

tgttccggtggaggctcgccaggctgcgcaacc	CRISPR spacer
tggaggtctggagcctcgccaagctgcgcaacg	Protospacer
**      ***** *******.********** 

19. spacer 3.1|2525425|32|NC_021064|CRT matches to NZ_CP017943 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

atctctgcaagccgatttgttccagcagtaat	CRISPR spacer
tggtctgcaagccaatttcttccagcatcgcg	Protospacer
   **********.**** ******** ..  

20. spacer 3.4|2525608|32|NC_021064|CRT matches to NZ_LR027520 (Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence) position: , mismatch: 10, identity: 0.688

tcattctaaagggctgttgaaagacccgaatt	CRISPR spacer
ctcatctaaagggctgtaggaagacccaggtg	Protospacer
..  ************* *.*******...* 

21. spacer 3.9|2525914|32|NC_021064|CRT matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 10, identity: 0.688

tgttccggtggaggctcgccaggctgcgcaac	CRISPR spacer
attctcggtggcggctcggcaggctgcgtgct	Protospacer
  *..****** ****** *********.. .

22. spacer 3.9|2525914|32|NC_021064|CRT matches to FJ982340 (Burkholderia phage KS9, complete genome) position: , mismatch: 10, identity: 0.688

tgttccggtggaggctcgccaggctgcgcaac	CRISPR spacer
tcgctcggtggatgctcgacaggctgcgtgct	Protospacer
*  ..******* ***** *********.. .

23. spacer 3.13|2525486|33|NC_021064|PILER-CR,CRISPRCasFinder matches to CP000622 (Burkholderia phage phiE255, complete genome) position: , mismatch: 10, identity: 0.697

atgagctgaacaaactcaccgcgcgtcgcggcc	CRISPR spacer
tcgggctgaacgaacgcaccgcgcgtcgaatga	Protospacer
 .*.*******.*** ************ .   

24. spacer 3.13|2525486|33|NC_021064|PILER-CR,CRISPRCasFinder matches to NC_009237 (Burkholderia phage phiE255 chromosome, complete genome) position: , mismatch: 10, identity: 0.697

atgagctgaacaaactcaccgcgcgtcgcggcc	CRISPR spacer
tcgggctgaacgaacgcaccgcgcgtcgaatga	Protospacer
 .*.*******.*** ************ .   

25. spacer 3.20|2525914|33|NC_021064|PILER-CR,CRISPRCasFinder matches to NC_017767 (Thermus thermophilus HB8 plasmid pVV8, complete sequence) position: , mismatch: 10, identity: 0.697

tgttccggtggaggctcgccaggctgcgcaacc	CRISPR spacer
ccttccggtggagcctcgccagcctgagggcgg	Protospacer
. *********** ******** *** * .   

26. spacer 3.2|2525486|32|NC_021064|CRT matches to NZ_CP013105 (Paraburkholderia caribensis strain MWAP64 plasmid 2, complete sequence) position: , mismatch: 11, identity: 0.656

atgagctgaacaaactcaccgcgcgtcgcggc	CRISPR spacer
ttgaattgaacaaactcaccgcgctcgatcag	Protospacer
 ***..****************** . .. . 

27. spacer 3.12|2525425|33|NC_021064|PILER-CR,CRISPRCasFinder matches to NZ_CP017943 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed2, complete sequence) position: , mismatch: 11, identity: 0.667

atctctgcaagccgatttgttccagcagtaatg	CRISPR spacer
tggtctgcaagccaatttcttccagcatcgcgc	Protospacer
   **********.**** ******** ..   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 809327 : 818938 10 Erysipelothrix_phage(37.5%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage