CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP015232	Epibacterium mobile F1926 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0
NZ_CP015231	Epibacterium mobile F1926 plasmid unnamed1, complete sequence	0 crisprs	csa3,RT,DEDDh	0	2
NZ_CP015230	Epibacterium mobile F1926 chromosome, complete genome	2 crisprs	cas3,WYL,csa3,DEDDh	2	4
NZ_CP015234	Epibacterium mobile F1926 plasmid unnamed4, complete sequence	0 crisprs	NA	0	1
NZ_CP015233	Epibacterium mobile F1926 plasmid unnamed3, complete sequence	0 crisprs	csa3	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2580 : 27194

Methylophilaceae_phage(28.57%)

terminase,head,tail,portal,capsid,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005613709.1\|2580_4269_+\|terminase	terminase large subunit	A0A2H4FRP7	Methylophilaceae_phage	3.9e-79	33.4
WP_005613712.1\|4305_5514_+\|portal	phage portal protein	H6WZL2	Escherichia_phage	1.1e-27	26.7
WP_157859747.1\|5506_5671_+	hypothetical protein	NA	NA	NA	NA
WP_005613715.1\|5904_6378_+\|head,protease	HK97 family phage prohead protease	A0A2H4JA51	uncultured_Caudovirales_phage	1.2e-06	32.0
WP_005613717.1\|6426_7518_+\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_005613719.1\|7590_8136_+	hypothetical protein	NA	NA	NA	NA
WP_005613720.1\|8132_8444_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_005613722.1\|8440_8806_+	hypothetical protein	NA	NA	NA	NA
WP_005613723.1\|8852_9320_+	hypothetical protein	NA	NA	NA	NA
WP_005613724.1\|9374_9596_+	hypothetical protein	NA	NA	NA	NA
WP_005613726.1\|9727_9946_+	hypothetical protein	NA	NA	NA	NA
WP_005613727.1\|10065_10347_+	hypothetical protein	NA	NA	NA	NA
WP_005613728.1\|10407_10887_+	hypothetical protein	NA	NA	NA	NA
WP_005613729.1\|10886_13148_+	hypothetical protein	A0A2H4FT35	Methylophilaceae_phage	2.0e-06	26.8
WP_005613730.1\|13147_13756_+	hypothetical protein	NA	NA	NA	NA
WP_005613732.1\|13757_14321_+	hypothetical protein	NA	NA	NA	NA
WP_131665010.1\|14368_19411_+	hypothetical protein	F8TVN5	EBPR_siphovirus	4.1e-07	25.8
WP_005613737.1\|19423_19963_+	DUF4376 domain-containing protein	A0A2L0V114	Agrobacterium_phage	8.1e-23	50.4
WP_005613740.1\|20087_21446_-	hypothetical protein	A0A1S5SA14	Streptococcus_phage	3.8e-16	24.2
WP_040641574.1\|21764_22571_+	hypothetical protein	NA	NA	NA	NA
WP_005613746.1\|22920_23790_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA
WP_005613748.1\|23947_24853_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005613750.1\|25040_25826_+	inositol monophosphatase	NA	NA	NA	NA
WP_005613751.1\|26009_26396_-	GFA family protein	NA	NA	NA	NA
WP_005613753.1\|26423_27194_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA

DBSCAN-SWA_2

793274 : 844399

Rhodobacter_phage(15.0%)

terminase,portal,holin,transposase,protease,integrase

attL 801816:801864|attR 840983:841031

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005624003.1\|793274_794789_-\|holin	choline-sulfatase	A0A1V0SA98	Catovirus	9.6e-21	25.1
WP_040642547.1\|795074_797129_+	EAL domain-containing protein	G3MA91	Bacillus_virus	3.7e-07	26.6
WP_005624007.1\|797339_798386_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_005624009.1\|798475_799057_+	TRAP transporter small permease	NA	NA	NA	NA
WP_005624013.1\|799053_800559_+	TRAP transporter large permease	NA	NA	NA	NA
WP_005624016.1\|800633_801659_-	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	3.3e-17	26.7
801816:801864	attL	NA	NA	NA	NA
WP_040642551.1\|802049_802697_-	hypothetical protein	A0A1B1IY20	Phage_MedPE-SWcel-C56	2.0e-28	40.7
WP_005624023.1\|802782_803037_-	hypothetical protein	NA	NA	NA	NA
WP_005624026.1\|803223_803970_-	lysozyme	A0A0K1Y6F2	Rhodobacter_phage	1.7e-34	48.4
WP_005624028.1\|804074_804290_-	hypothetical protein	NA	NA	NA	NA
WP_046002530.1\|804314_805145_-	hypothetical protein	NA	NA	NA	NA
WP_005632031.1\|805153_805531_-	hypothetical protein	NA	NA	NA	NA
WP_052699543.1\|805530_810063_-	hypothetical protein	G8DH58	Emiliania_huxleyi_virus	1.7e-04	36.7
WP_005607661.1\|810067_810514_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_005607664.1\|810506_811139_-	hypothetical protein	NA	NA	NA	NA
WP_005607667.1\|811166_811799_-	hypothetical protein	A0A291AUM9	Sinorhizobium_phage	2.5e-07	26.6
WP_052699542.1\|811795_813997_-	hypothetical protein	A0A1J0GUY9	Halomonas_phage	2.6e-19	31.9
WP_005635092.1\|813996_814323_-	hypothetical protein	NA	NA	NA	NA
WP_005635094.1\|814349_814688_-	hypothetical protein	NA	NA	NA	NA
WP_005635096.1\|814739_815168_-	hypothetical protein	A0A0U2BX03	Paracoccus_phage	6.9e-25	48.3
WP_005635099.1\|815192_815648_-	hypothetical protein	NA	NA	NA	NA
WP_005635102.1\|815644_815968_-	hypothetical protein	NA	NA	NA	NA
WP_005635105.1\|815967_816288_-	DUF2190 family protein	NA	NA	NA	NA
WP_005635108.1\|816389_818408_-\|protease	Clp protease ClpP	Q8VNN5	Enterobacteria_phage	1.0e-38	26.9
WP_052699541.1\|818404_819856_-\|portal	phage portal protein	B7SYD6	Stenotrophomonas_phage	1.3e-51	32.2
WP_046002529.1\|819860_820067_-	hypothetical protein	NA	NA	NA	NA
WP_005612403.1\|820072_822175_-\|terminase	phage terminase large subunit	A0A0K1Y726	Rhodobacter_phage	2.2e-140	42.9
WP_005612404.1\|822174_822771_-	hypothetical protein	A0A291AUT3	Sinorhizobium_phage	2.3e-10	25.6
WP_131664995.1\|823097_823739_-	hypothetical protein	A0A0K1Y721	Rhodobacter_phage	1.2e-28	38.0
WP_005612407.1\|824013_824736_-	hypothetical protein	NA	NA	NA	NA
WP_005612409.1\|825707_826265_+	hypothetical protein	NA	NA	NA	NA
WP_052032000.1\|826572_827547_+	hypothetical protein	NA	NA	NA	NA
WP_005612413.1\|827822_828590_-	hypothetical protein	NA	NA	NA	NA
WP_005612416.1\|828589_828802_-	hypothetical protein	NA	NA	NA	NA
WP_005612419.1\|829117_830914_-	P4 family phage/plasmid primase	G8DGC0	Emiliania_huxleyi_virus	2.8e-112	39.5
WP_005612422.1\|830913_832029_-	hypothetical protein	G8DGB8	Emiliania_huxleyi_virus	4.7e-65	42.0
WP_005612425.1\|832103_832607_-	single-stranded DNA-binding protein	A0A0U2C0X4	Paracoccus_phage	1.1e-48	75.6
WP_005612428.1\|832697_832940_-	hypothetical protein	NA	NA	NA	NA
WP_005612432.1\|832932_833217_-	hypothetical protein	NA	NA	NA	NA
WP_005612435.1\|833408_833729_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005612441.1\|834523_835606_+\|integrase	tyrosine-type recombinase/integrase	A0A067XRF8	Caulobacter_phage	1.9e-18	31.2
WP_005612443.1\|835688_835937_+	hypothetical protein	NA	NA	NA	NA
WP_005612446.1\|835933_836434_+	hypothetical protein	NA	NA	NA	NA
WP_005612448.1\|836599_837637_-	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
WP_005612450.1\|838273_839119_+	hypothetical protein	A0A1S5S8Z0	Streptococcus_phage	5.0e-11	31.7
WP_005612452.1\|839288_840818_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_131664993.1\|841156_843037_-	TniQ family protein	NA	NA	NA	NA
840983:841031	attR	NA	NA	NA	NA
WP_157888506.1\|843612_844399_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-17	36.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP015230

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015230_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015230_1

650569-650646

Orphan

Consensus_repeat	Method
AGTAGATACCGGTTTTCCCGATCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015230_1

>merge|NZ_CP015230|1|650569-650646|CRISPRCasFinder
AGTAGATACCGGTTTTCCCGATCAGGGGGCGGGCCGCGCCGCTCGCAGGGAAAAGTGGATACCGGTTTTCCCGATCAG

>NZ_CP015230|1|1|650569-650646|CRISPRCasFinder
AGTAGATACCGGTTTTCCCGATCAG	GGGGCGGGCCGCGCCGCTCGCAGGGAAA
AGTGGATACCGGTTTTCCCGATCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015230.1\|WP_046002419.1\|661816_663211_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240548
NZ_CP015230.1\|WP_005651385.1\|651724_653446_-\|OFA-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340911
NZ_CP015230.1\|WP_046002409.1\|640245_642327_+\|molybdopterin-oxidoreductase-family-protein	unknown	unknown	gnl\|CDD\|239167
NZ_CP015230.1\|WP_046002412.1\|647394_648681_-\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
NZ_CP015230.1\|WP_080929600.1\|649163_649793_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380061
NZ_CP015230.1\|WP_005648149.1\|660503_661463_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176856
NZ_CP015230.1\|WP_005644081.1\|655390_656845_-\|Na+/H+-antiporter-NhaC	unknown	unknown	gnl\|CDD\|188097
NZ_CP015230.1\|WP_046002410.1\|642438_643836_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP015230.1\|WP_046002416.1\|653796_655152_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP015230.1\|WP_005648151.1\|660009_660501_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015230.1\|WP_005619141.1\|638266_639295_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP015230.1\|WP_005619138.1\|639385_640102_+\|mitomycin-antibiotics/polyketide-fumonisin-biosynthesis-protein	unknown	unknown	unknown
NZ_CP015230.1\|WP_046002462.1\|644370_646113_-\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
NZ_CP015230.1\|WP_046002418.1\|657934_659209_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|234819
NZ_CP015230.1\|WP_046002411.1\|646230_647214_-\|class-II-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236536
NZ_CP015230.1\|WP_046002417.1\|656945_657881_-\|ornithine-cyclodeaminase-family-protein	unknown	unknown	gnl\|CDD\|180421
NZ_CP015230.1\|WP_046002415.1\|649798_650287_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP015230.1\|WP_005648153.1\|659273_659924_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380339
NZ_CP015230.1\|WP_046002420.1\|663207_663663_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015230.1\|WP_046002413.1\|648777_649080_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP015230.1\|WP_046002419.1\|661816_663211_+\|MATE-family-efflux-transporter	gnl\|CDD\|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	6.09166e-120
NZ_CP015230.1\|WP_005651385.1\|651724_653446_-\|OFA-family-MFS-transporter	gnl\|CDD\|340911	cd17353, MFS_OFA_like, Oxalate:formate antiporter (OFA) and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of Oxalobacter formigenes oxalate:formate antiporter (OFA or OxlT) and similar proteins. O. formigenes, a commensal found in the gut of animals and humans, plays an important role in clearing dietary oxalate from the intestinal tract, which is carried out by OFA/OxlT, an anion transporter that facilitates the exchange of divalent oxalate with monovalent formate, the product of oxalate decarboxylation. This exchange generates an electrochemical proton gradient and is the source of energy for ATP synthesis in this cell. The OFA-like subfamily belongs to the Monocarboxylate transporter -like (MCT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.71038e-48
NZ_CP015230.1\|WP_046002409.1\|640245_642327_+\|molybdopterin-oxidoreductase-family-protein	gnl\|CDD\|239167	cd02766, MopB_3, The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.	7.46746e-179
NZ_CP015230.1\|WP_046002412.1\|647394_648681_-\|homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	0
NZ_CP015230.1\|WP_005619141.1\|638266_639295_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	8.39025e-51
NZ_CP015230.1\|WP_046002418.1\|657934_659209_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	1.0914e-117
NZ_CP015230.1\|WP_046002410.1\|642438_643836_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.78696e-122
NZ_CP015230.1\|WP_005644081.1\|655390_656845_-\|Na+/H+-antiporter-NhaC	gnl\|CDD\|188097	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria. Intriguingly, archaeal homolog ArcD (just outside boundaries of family) has been identified as an arginine/ornithine antiporter. [Transport and binding proteins, Cations and iron carrying compounds].	8.83942e-134
NZ_CP015230.1\|WP_005648149.1\|660503_661463_-\|hypothetical-protein	gnl\|CDD\|176856	cd07814, SRPBCC_CalC_Aha1-like, Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity, and may regulate the dwell time of Hsp90 with client proteins. Aha1 can act as either a positive or negative regulator of chaperone-dependent activation, depending on the client protein, but the mechanisms by which these opposing functions are achieved are unclear. Aha1 is upregulated in a number of tumor lines co-incident with the activation of several signaling kinases.	0.000352258
NZ_CP015230.1\|WP_080929600.1\|649163_649793_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|380061	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present in family members such as HTH-type transcriptional repressor KstR2 as well as fatty acid metabolism regulator proteins. In Mycobacterium smegmatis, KstR2 is involved in involved in cholesterol catabolism, while YsiA in Bacillus subtilis is involved in fatty acid degradation.	2.43752e-32
NZ_CP015230.1\|WP_046002417.1\|656945_657881_-\|ornithine-cyclodeaminase-family-protein	gnl\|CDD\|180421	PRK06141, PRK06141, ornithine cyclodeaminase family protein.	7.25456e-135
NZ_CP015230.1\|WP_046002462.1\|644370_646113_-\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP015230.1\|WP_046002416.1\|653796_655152_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	1.78882e-141
NZ_CP015230.1\|WP_046002411.1\|646230_647214_-\|class-II-fructose-bisphosphatase	gnl\|CDD\|236536	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed.	0
NZ_CP015230.1\|WP_046002415.1\|649798_650287_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	8.17197e-15
NZ_CP015230.1\|WP_005648153.1\|659273_659924_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	8.47344e-25

>NZ_CP015230.1|WP_046002415.1|649798_650287_+|GNAT-family-N-acetyltransferase
MALLDLQSERLRAVPVARLSPQDREALFEPEVVAYLPDGFQGLETDAARCALLDGVQQEAEVVVLATTAGGVIGLLILSHGAAGDRLRHLGYLFVRAAWGQGYASEMLRALQDLYRGQPVVLSSGVMADNAASARVLQKQGFVPSAPSEAGELTYIWDAQRG
>NZ_CP015230.1|WP_080929600.1|649163_649793_+|TetR/AcrR-family-transcriptional-regulator
MVLLSEQMFRYLGSMARTQGSHSEFTGPRIRAAAQELFARHGYAAVSMRQIAGAVGVQAGALYNYTADKQSLLFDLMQAHMEGLLSAWAAEEVPVDVMGQLEGFVRFHIRYNLERPDAVFIAYMELRNLTEENFAKIEDRRRAYEDQLEGILKAGVAQGLFQVPDTKIAALAVIAMLNGVLTWYRDGGRLSLVEVETLYWDMVRKSVGV
>NZ_CP015230.1|WP_046002413.1|648777_649080_-|hypothetical-protein
MPARQTALMRMTPAPRLARLTVLSACALLSVSAACSRVPQLEDRLPADLRSQPYPELLPLDTALAQEPLPEEESAALSDALDARADRLRRRAEALRRRQP
>NZ_CP015230.1|WP_046002412.1|647394_648681_-|homoserine-dehydrogenase
MTEPLRLGIAGLGTVGIGVVKIIRRHAALLEARTGRPVVITAVSARDATKDRGVSLKDYAWETDPVALATRDDVDVFVELMGGHEGPAKLATEAALAAGKDVVTANKALLAIHGQALAEQAEANGRVIRFEAAVAGGIPVIKSLTESLAGNEITRVMGVMNGTCNYILTQMEATGRGYNALFEECGQLGYLEADPLLDVGGIDAGHKLALLASIAFGTKPAFDDVKLEGIQRIAIEDIRHAADMGYRIKLLGVAQRSARGLEQRMTPCLVPADSPLGQLEGGTNMVVIEGDAIDQVVLRGPGAGEGPTASAVMGDVLDIARGLRIATFGQPATTLSEEPAAQTGLPAPYYVRMALQDKPGALAKVAAALGDAGVSIHRMRQYDHATTVAPVLIVTHKCTSTMLEQALEALAATGVVEGAPVALRIEEL
>NZ_CP015230.1|WP_046002411.1|646230_647214_-|class-II-fructose-bisphosphatase
MTSTTADAPFHDRLLSLGLARVAEQAALASAPLIGRGDEKAADQAAVNAMREQLNLLDIAGTVVIGEGERDEAPMLYIGEEVGTGNGPGVDIALDPLEGTTLTAKDMPNALTVIAMGPRGSMLHAPDTYMDKLAVGPGYPEGVVSLDMSPRERVEALAKAKGCAPSDITVCILERPRHEAMIAEVRETGASIRLITDGDVAGVMHCAEAETTGIDMYMGQGGAPEGVLAAAALKCMGGQIFGRLLFRNDDEKARAAKAGITDLDRVYSRDEMVTQDVIFAATGVTGGSLLPRIKRQPGWVETTTLLMRSKTGSVRRMTYRTPLSAHQ
>NZ_CP015230.1|WP_046002462.1|644370_646113_-|single-stranded-DNA-specific-exonuclease-RecJ
MSFLGVETSLTGRSWIGPGVEQARAGEHLAQETGLPPAVCQVLARRGVPAHEATGFLTPQLKELLPDPRRMKDMETAAARFLQAVERRERIAIFADYDVDGGSSAALLLVYLRQMGQQATLYIPDRIDEGYGPNDEAMAALARDHDLIVCVDCGTLSHGPIAAAKGADVVVLDHHLGGETLPDCVAVVNPNRQDEDGDLGYFCAAGVVFLMLVEVRRQAREKGLGAGPDLMAMLDLVALATVADVAPLIGANRALVRQGLKVMGRRQRAGLVALADVSRMDSAPSTYHLGFLLGPRVNAGGRIGKADLGARLLSTDNPHEAAALAERLDQLNTERRDIENAVRAAALEQAEERGFDAPLVWAAGEGWHPGVVGIVASRLKEATGRPAVVIGLDGDEGKGSGRSVSGIDLGASIQKVAMEGLLLKGGGHKMAAGLTVARDQLEPAMARLAELLDKQGAGDLGPADLKLDGMLMPGAATVELIEQIEQAGPFGAGAPAPRYGFPDLAVRFAKRVGESHLKVSFTDGMGGNIDAIAFGAFDTPLGPRLLEHSGARFHVAGRLEVNTWGGRQSAQLRLEDAAEA
>NZ_CP015230.1|WP_046002410.1|642438_643836_+|PLP-dependent-aminotransferase-family-protein
MPGDTPAFMPDRTSDVPIFEQICASFRGRIRSGALETGARLPATRALAGDLGVARATVVTAYEQLVAEGYLASRRGSGYTVCAMGEVELSPGPSAAPAPKLSERGDLLLEAGQPDMRLFPHRAWAKCVARLCRTRPEDMLTGCGRFGHPELRQAIASHVRDWRGIAARPEQVLVTSGATEALDICLHALASAEGRVGVEDPGFPPIRRFAEAQGRRTRDLALDAQGAEVPRLGDETDVVVLTPSHQYPLGGAMSAGRRQEFVRWAAQSQGWIIEDDYDSEFRYAGRPIPALAGVDGQGRTVYIGSFSKIFSNSLRMGYIVAPEGLIDRLAQAMRMKGARASAMPQAALAEFMQRGEFYRHLRRVRRTYAERHRTLIDRLRRDFADVGHVEDHHAGMQVVLHLHPELCDQAITAAARAGGVGVESLSTYSRRAGAYNGVVLGACLNDLEDQAEALTRLRRAISSTG
>NZ_CP015230.1|WP_046002409.1|640245_642327_+|molybdopterin-oxidoreductase-family-protein
MSSQRPSTALTQVLPSVCPLDCPDTCSLSVEVTGDQITSVRGSDANPFTAGVVCNKVTRAYPDFVHGPARLTHPLRRVGPRGSDQFERISWDAALDLVVAGFRAAIDAHGAQSILPLNYAGPHGELAGGSLDRRFFYRLGATRMNRGPLCGGVRSLAYESLYGNAPGMPPEQAQHADLIVVWGNNVTVSNLHLTRVVKAARAKGARLVVIDPKRIKIAQQADLYLQVKPGTDVVLAHALAAELERRGAFDAEFIAQWVHGAEDYMSEARRYSIEDAAEICGLEARDILQLADWMQAAERLATSTGNGMERGRSGGSGLRAAMALNALLGQHGRLGAGVVAKSGLASPKTRARLQGDHLIDPDTRVVNILDVARLMLDRDQPTPINAVMIYNHNPVATHPDQARMIAALSQPEMFTVGCDVVMTDSMAYCDVILPAATHFEHDEIFAAYGQNYVQRAEPVIAPVGESLPNTEIFRRLAARFGYTEAAHQASDVQLMDDAMDASHPQFEGRPPSQMPTDRALEMQNSDGAALILCDTVTPDTETGRIELFSAALEAETGFGVPRFDPVPQDLPLVLITPSSDKRINATFGSAPLSAGPESIEVHPEDAAERGLEEGDTVEVANARGAVTFRLKISDAMQRGVVYAPKGTWRISSETGLTANALIPVEVRTDIGDGACYNETFVELRAYGGRHAAE
>NZ_CP015230.1|WP_005619138.1|639385_640102_+|mitomycin-antibiotics/polyketide-fumonisin-biosynthesis-protein
MKGQSLRDEFENCGRIWLRNAISKADLARFDCAAGGSEQAGQRLDASAALNDALSRESSLLRALRCLAPAAEPVRIVAFNKSEKANWGVPWHQDRIIAVAAKADVAGYMNWTHKSGVWHCEPPRAILENMLFVRIHLDDSDHSNGAMEIALGSHAAGVVRTADAAAVANTYPIETCTAKRGDVLVLKMLTLHASQPAKVQSGGRVLRVDFSSSHLPPPLSWGWQSRQSSRLMPEGEHQ
>NZ_CP015230.1|WP_005619141.1|638266_639295_+|diguanylate-cyclase
MMSFDQLTGLADQLCPMHVIIDAEGLVVSHGPTLNKICGDESWVGKPFLEVLDLQRPRSVKQVSDLMQTAGSKLHFQLNEAPHTRMKGVLVPLPEGQGAFINLSFGISVLDAVRDFNLTSQDFSPTDLTIEMLYLVEAKSAAMEASRQLNLRLQGAKIAAEEQAFTDTLTGLKNRRAMDHVLNRLISGGRDFALMNVDLDFFKSVNDTYGHAAGDAVLQRVAAIMVECTRKSDTVARIGGDEFVLVFEGLMDRNRLNDLACRLIARLEEPIMYGADECRISASAGTTLSTDVVQPLPATLLYQADIALYASKRAGKAQHMFYTPRLEDEMEMELIEQDSKSA
>NZ_CP015230.1|WP_005651385.1|651724_653446_-|OFA-family-MFS-transporter
MSTAQGGALSFLRKEHIVAEPGFNRWRVPPASIAIHLCIGSVYAWSVFNPPLTRELGVLASSAEDWSLSSVVWIFSVAIVFLGLAAAFAGKWLEEVGPRMVGVVAAFLWGGGFILGSFGISTHQLWLVYIGYGVLGGCGLGLGYVSPVSTLLRWFPDRRGMATGMAIMGFGGGAMIAAPVKGWLLGLYQKAPEFLGSADAVQTIVEGGRVFAETATGRLEVVVATATQAASFGGEAGVYVVGTGNTGAAQTFMTLGVVYFVVMILASFQYRVPAKDWKPAGWEPKPVASGMVSQNNVHIDQALKTPQFWQLWVMLCFNVTAGIGVIGVAKTMMSEIFGSVMPLVVTAAFASTYVLMISVFNMVGRFFWASTSDYIGRKATYMCFFVLGTLLYLSIPYFASAVATNPSLIYLIGFYAATMIIFSMYGGGFATIPAYLADMFGTMHVGGIHGRLLTAWSTAGVLGPLAITSLRQMSVTSAIEDLATRVDPAAFAAKFGAPLAQLDQLVAAKTVTIAKLMEIAPAGTIDPTPSLYNTTMYCMAALLVVAFVANLVMRPVREHHHHDEPELQVVAGE
>NZ_CP015230.1|WP_046002416.1|653796_655152_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MEVMERPDTSEPLARAQILVVDDEPGMRNFLVKTLRPLCRGVDEAATAAEAEQCLARQHYDVMLLDNIMPGTKGLDWLAERQRTGGFTETIMITAYADFHIALEALRAGASDLVLKPFRSNQIVNSLRRSLEVAQLKRENQALRRALAQSDPGSRRTDLIGSSAAISDVRAVLERVAQLKTPVLITGASGTGKEVAARHLHKRSARADAPFVAIHCGAIPTEMIEVELFGHAPGAFPGAQGAREGLLASAQGGTVFLDDMAELSAHAQTALLRVLEDGVIRPVGSERDVQLDLRFVMSSARSLQQAVAEGRFRRDLLYRINVVELDMPPLKLRGADVVDLAELFLSEIAGTMGVPPLEIPPGVRSAMLRYDWPGNIRELRNFVERALIFGRFPAAIGEDHGHDAEIAPLEDVERREILRALELVGGNRTEAARRLGVSRKTIDRKCATWGL
>NZ_CP015230.1|WP_005644081.1|655390_656845_-|Na+/H+-antiporter-NhaC
MPLQKTDVRPSIGLALLPIVLTLGILGVQIFYFGDFTPHIPLAIGIALTAVVGLIEGLSWDEIEKGAFHVIAVSFPAVSVLILVGMIVGTWIASGTVPTLIYYGLSLLSPQLFLAAGMILCSIVSLALGTSWGTVGTVGLALMGIGEGFGIPAYWTAGAVVSGAFFGDKISPLSDTTNLAPAVTDTQLFDHIRNMLPTTVPAMLIALAIYTVMGFNLGEGEPSFERIESFKTALDGSFDITPWLLLPALLVIGLAMMKMPAIPTLFIGVVVASLIAIFVQGASVHDVFTYANYGYSVETGVEAMDALMNRGGIQSMMWTISLILIALGFGGALERTGCLAAIIELLTKRVKTIAGVQTSAILSSMATNTVAGDPYLSIALPGRMFKPVYDRIGYSRLNLARATEEGGTIISPLIPWNAGGAFVISALALGISEGKMENLLYIPLSFACWLAPVFGIFYAWTGFFTPTAEETGEVAPDAAQRPAE
>NZ_CP015230.1|WP_046002417.1|656945_657881_-|ornithine-cyclodeaminase-family-protein
MKILDQEQTRAALPYAELIDALDQGFCGAYEAPLRHHHYLENAEEEDDVLLLMPAWRAEGFGGIKLVNVVPGNSKRGRAALSSSYVLFDRETGAHLLLADGGELTARRTAAASALAARRLARPESATHLIIGAGRVGFNLAQAYREVLPMTRTLVYDIMPENAARTVANLNEMGIAAEVTESVEAAAAEADVISCATLSQTPVLQGAWLHPGQHIDLIGSFTPTMREADDAVLTRATVYVDTMDALVESGDIKTPLETGVLVESDIRATLKDLCEGDLSPRQSPEEITLFKGVGTAIEDLSAAILAYRSTS
>NZ_CP015230.1|WP_046002418.1|657934_659209_-|FAD-dependent-oxidoreductase
MHDQQKRGQRIAVIGAGVVGMATAYHLAERGHHVTVIERAKAPAEGCSFANAGIIAVGHAESWAGPAAPAQMIHALLGRTPSVKISKLMDPQLWRWGLAFLRQCSARAHRENSGAMAWLARHGRQELQALEQATGLAFEQGHDGAYYLYGEESAFAARKESDHLEGFSPMSAEELTQWDPALKVYGDRLKGGRLSSVDSKGDCRRFTRALAQWLEQNRQVAFRYGATVTGFERAQGRVSAVQTTDGPVPCDQLVIAAGVGTVALGKQLGVRPLIYPVKGYSATYPIRDGAYMPARPLVDETNLIAVTRLGSYLRVTAIAEFAGHDSSPNPERAAYLDDYVARHFGCAVELDAVTHWAGLRPTTPSGRPYLGRLRTHRNVWLNAGHGQLGWTMAAGAGQLLAERLHGAQSPSYGVSETARWLIAA
>NZ_CP015230.1|WP_005648153.1|659273_659924_+|helix-turn-helix-transcriptional-regulator
MSQTTKKDSPFSSDVQAALLDDSEKQRIRLELGRRVKGLRSSAGMTLEQAAERTGLAVSTIYKIENGKVSPSFENLLRLARGYGVGLEKLIAEPEDEVSTTRLTVTRAGQGRSVEGKVYEYEVLCNGLTGKKIIPLIGTISAAGDSVPAHLDRHDGEELLFVLEGEVELMVEHYEPVILGAGDCAYYDSTMRHGVRSTGPNEARVFWACTHLGGLS
>NZ_CP015230.1|WP_005648151.1|660009_660501_+|hypothetical-protein
MSSQMDRGEILATVEASPARRVIGVGMLVGLGLVLLYLSMISTPGLAWQGFLLLVAGGALWMGYRMWHATAHRLELTAEGLRCSDGTEIIRISDLQHLDRGFFAFKPSNGFLMRSKTAGDKCWYPGLWWRLGRRIGVGGVTPGSQTKTMTEILAAMMVERDAG
>NZ_CP015230.1|WP_005648149.1|660503_661463_-|hypothetical-protein
MDMLSNFLRILAPAIALVVGVLGLAALSVSTIDPVGFGYLFGFPALAGFIIMWFRPKNSFKTFGKSVAWLLSIMLLSVLGSWVSGLEGLICITIALIPILFGTLLGGVLYLCYDRWKKLSKSTLSVASMPILAIALANAIPANPEVYQISNSILIDAPPAVVFQMLKSIPDISPDEVETRPTHLLGVPKPTAAVWEEGENGAVRHSYWSDEVHFLERITAYDPARRIAWDFEFPEGWAPEGIEDQHVKVGGPYFDVLRGEYLLEEKDGKTQLTLTSWTYDGSGMGGYAEFWHNFFFDDFHDVILHVVKARTERAWSEQS
>NZ_CP015230.1|WP_046002419.1|661816_663211_+|MATE-family-efflux-transporter
MASSPTNHFLTGRLGPTYAKTALPIIFVMGMNGCLTVADALFLGHFVGPEALAAVTLMFPAYMLVVALATLVASGMSSRLARHLGAGDTPAAQADYAGAHGLALAVAVALMVAFVLWGDAVTQAAAGGNATLAAMGHTYLRITVGCTPLLFVLSVNSDALRNEGRAGLMALMSLVVSLSNIAFNYLLIAKAELGVAGSALGTALAQALALALILGFRLRGNTVLRPAILWQQSLIAGWGRMLALGAPQSLNFIGIALGSAAIMAALQWVEAPDYAKTLTAYGVITRLLTFTFLPLLGLSHAMQSITGNLYGAGERLRARQSLRLAIWIALIYCAVTQAALSLGAAQIASWFVADPGVIAQVARILPILGGLFVLAGPLMMVAMHFQAIGDAARAALLGLAKPYLFSIPLTFVLAAYFGETGIWLAAPLAEAALLLLTLSVLIDLRRRHGPRRYAAPTRASEGNS
>NZ_CP015230.1|WP_046002420.1|663207_663663_+|hypothetical-protein
MRQPLPSLSEAKATARAWRSEQAQAGERRSHSAALEHVARQLGFRDWNACVATLAQSEARSYATGDHVSGHYLSQPFTARILRATPAEGRPGWVQVELELDHPVDVVTSERFSNLRRRIRAVVGPEGYSRERTSDGVPHLVLGVYGGHTRA

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Crispr_ID: NZ_CP015230_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015230_2

2271042-2271124

Orphan

Consensus_repeat	Method
CCAGAAACAGTAACCACGCTGCCGCTACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015230_2

>merge|NZ_CP015230|2|2271042-2271124|CRISPRCasFinder
CCAGAAACAGTAACCACGCTGCCGCTACGACCCTTCAGATTGTTGACCGCACCACCAGAAACATTAACCACGCTGCCGCTACG

>NZ_CP015230|2|2|2271042-2271124|CRISPRCasFinder
CCAGAAACAGTAACCACGCTGCCGCTACG	ACCCTTCAGATTGTTGACCGCACCA
CCAGAAACATTAACCACGCTGCCGCTACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015230.1\|WP_005614124.1\|2284942_2286871_+\|type-VI-secretion-system-baseplate-subunit-TssF	unknown	unknown	gnl\|CDD\|377574
NZ_CP015230.1\|WP_005614119.1\|2281611_2282136_+\|type-VI-secretion-system-contractile-sheath-small-subunit	unknown	unknown	gnl\|CDD\|377529
NZ_CP015230.1\|WP_005620937.1\|2251996_2253067_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|274718
NZ_CP015230.1\|WP_040643336.1\|2278039_2278669_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015230.1\|WP_046002620.1\|2264270_2265830_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|180801
NZ_CP015230.1\|WP_005614123.1\|2284352_2284946_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377431
NZ_CP015230.1\|WP_005614121.1\|2283716_2284214_+\|type-VI-secretion-system-tube-protein-Hcp	unknown	unknown	gnl\|CDD\|377536
NZ_CP015230.1\|WP_005614125.1\|2286867_2287989_+\|type-VI-secretion-system-baseplate-subunit-TssG	unknown	unknown	gnl\|CDD\|377755
NZ_CP015230.1\|WP_046002090.1\|2278725_2280051_+\|type-VI-secretion-system-associated-FHA-domain-protein-TagH	unknown	unknown	gnl\|CDD\|274537
NZ_CP015230.1\|WP_005620926.1\|2259965_2260631_-\|type-VI-secretion-system-associated-protein-TagF	unknown	unknown	gnl\|CDD\|132416
NZ_CP015230.1\|WP_005614118.1\|2280144_2281503_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274544
NZ_CP015230.1\|WP_005620932.1\|2255285_2257055_+\|FkbM-family-methyltransferase	unknown	unknown	gnl\|CDD\|273628
NZ_CP015230.1\|WP_005638310.1\|2265829_2267164_-\|type-VI-secretion-system-baseplate-subunit-TssK	unknown	unknown	gnl\|CDD\|377569
NZ_CP015230.1\|WP_040642312.1\|2253812_2255279_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NZ_CP015230.1\|WP_005620924.1\|2260636_2264269_-\|type-VI-secretion-system-membrane-subunit-TssM	unknown	unknown	gnl\|CDD\|274531
NZ_CP015230.1\|WP_005620930.1\|2257117_2259184_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP015230.1\|WP_005620928.1\|2259180_2259966_-\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|223704
NZ_CP015230.1\|WP_005614120.1\|2282172_2283666_+\|type-VI-secretion-system-contractile-sheath-large-subunit	unknown	unknown	gnl\|CDD\|274538
NZ_CP015230.1\|WP_110590781.1\|2253105_2253618_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP015230.1\|WP_046002091.1\|2288021_2290745_+\|type-VI-secretion-system-ATPase-TssH	unknown	unknown	gnl\|CDD\|274528

Protein	Function_ID	Function_description	E-value
NZ_CP015230.1\|WP_005614124.1\|2284942_2286871_+\|type-VI-secretion-system-baseplate-subunit-TssF	gnl\|CDD\|377574	pfam05947, T6SS_TssF, Type VI secretion system, TssF. This is a family of Gram-negative bacterial proteins that form part of the type VI pathogenicity secretion system (T6SS), including TssF. TssF is homologs to phage tail proteins and is required for proper assembly of the Hcp tube (the T6SS inner tube) in bacteria.	6.58926e-159
NZ_CP015230.1\|WP_005614119.1\|2281611_2282136_+\|type-VI-secretion-system-contractile-sheath-small-subunit	gnl\|CDD\|377529	pfam05591, T6SS_VipA, Type VI secretion system, VipA, VC_A0107 or Hcp2. VipA is a family of Gram-negative bacterial proteins that form part of the type VI pathogenic secretion system. Members have been variously defined as VC_A0107 family, Hcp2 and VipA, for ClpV-interacting proteins. VipB and VipA proteins interact very closely to form the shaft of the pathogenic penetrating needle system.	2.80457e-60
NZ_CP015230.1\|WP_005620937.1\|2251996_2253067_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|274718	TIGR03675, Uncharacterized_protein_MJ1236, arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined as arCOG01782.	1.93673e-18
NZ_CP015230.1\|WP_046002620.1\|2264270_2265830_-\|OmpA-family-protein	gnl\|CDD\|180801	PRK07033, PRK07033, DotU family type VI secretion system protein.	6.26145e-70
NZ_CP015230.1\|WP_005614123.1\|2284352_2284946_+\|hypothetical-protein	gnl\|CDD\|377431	pfam04965, GPW_gp25, Gene 25-like lysozyme. This family includes the phage protein Gene 25 from T4 which is a structural component of the outer wedge of the baseplate that has acidic lysozyme activity. The family also includes relatives from bacteria that are also presumably lysozymes.	1.3218e-09
NZ_CP015230.1\|WP_005614121.1\|2283716_2284214_+\|type-VI-secretion-system-tube-protein-Hcp	gnl\|CDD\|377536	pfam05638, T6SS_HCP, Type VI secretion system effector, Hcp. HCP is a family of proteins which are expressed in up to 1000 copies in Gram-negative bacteria. Together these copies aggregate into a needle-like shaft or tube that will penetrate other bacteria via a puncturing protein attached to its head. Initially Hcp forms a hexameric structure with a central channel of 40 Angstroms. These hexamers pile up one on top of each other forming nanotubes resembling the gp19 tail phage tube.	1.86823e-49
NZ_CP015230.1\|WP_005614125.1\|2286867_2287989_+\|type-VI-secretion-system-baseplate-subunit-TssG	gnl\|CDD\|377755	pfam06996, T6SS_TssG, Type VI secretion, TssG. This is a family of Gram-negative bacterial proteins that form part of the type VI pathogenicity secretion system (T6SS), including TssG. TssG is homologs to phage tail proteins and is required for proper assembly of the Hcp tube in bacteria.One other member in this family, SciB (Q93IT4) from Salmonella enterica, is thought to be involved in virulence.	1.38283e-78
NZ_CP015230.1\|WP_046002090.1\|2278725_2280051_+\|type-VI-secretion-system-associated-FHA-domain-protein-TagH	gnl\|CDD\|274537	TIGR03354, VI_FHA, type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	2.23001e-65
NZ_CP015230.1\|WP_005620926.1\|2259965_2260631_-\|type-VI-secretion-system-associated-protein-TagF	gnl\|CDD\|132416	TIGR03373, VI_minor_4, type VI secretion-associated protein, BMA_A0400 family. Members of this protein family are found exclusively, although not universally, in bacterial species that possess a type VI secretion system. Genes are found in type VI secretion-associated gene clusters. The specific function is unknown. This model represents the rather well-conserved amino-terminal domain of a protein family in which carboxy-terminal regions, when present, show little conservation. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	9.62692e-18
NZ_CP015230.1\|WP_005614118.1\|2280144_2281503_+\|hypothetical-protein	gnl\|CDD\|274544	TIGR03363, VI_chp_8, type VI secretion-associated protein, ImpA family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).	7.11403e-17
NZ_CP015230.1\|WP_005620932.1\|2255285_2257055_+\|FkbM-family-methyltransferase	gnl\|CDD\|273628	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.	1.01232e-12
NZ_CP015230.1\|WP_005638310.1\|2265829_2267164_-\|type-VI-secretion-system-baseplate-subunit-TssK	gnl\|CDD\|377569	pfam05936, T6SS_VasE, Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE. T6SS_VasE is a family of of bacterial proteins that are essential for the type VI pathogenic secretion system, although the exact function of this particular component of the system is still not known.	1.09431e-145
NZ_CP015230.1\|WP_040642312.1\|2253812_2255279_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	3.69604e-14
NZ_CP015230.1\|WP_005620924.1\|2260636_2264269_-\|type-VI-secretion-system-membrane-subunit-TssM	gnl\|CDD\|274531	TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. [Cellular processes, Pathogenesis].	0
NZ_CP015230.1\|WP_005620930.1\|2257117_2259184_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	6.84223e-71
NZ_CP015230.1\|WP_005620928.1\|2259180_2259966_-\|serine/threonine-protein-phosphatase	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	1.18951e-57
NZ_CP015230.1\|WP_005614120.1\|2282172_2283666_+\|type-VI-secretion-system-contractile-sheath-large-subunit	gnl\|CDD\|274538	TIGR03355, VI_chp_2, type VI secretion protein, EvpB/VC_A0108 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP015230.1\|WP_110590781.1\|2253105_2253618_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	8.43679e-28
NZ_CP015230.1\|WP_046002091.1\|2288021_2290745_+\|type-VI-secretion-system-ATPase-TssH	gnl\|CDD\|274528	TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0

>NZ_CP015230.1|WP_005638310.1|2265829_2267164_-|type-VI-secretion-system-baseplate-subunit-TssK
MSNFSKVAWKEGLFLQPHHLQQADRYLEHQLRERTATITPYPWGVSELRFDRDLAQQGKIGLRAVAGIMPDGIAFDAPGSVPLPVPVSVPEDEAQGLDVWLTLPDASVSGQDVSPAAADAATRYVLDAETVVNNASNSRSEHLVEIAQPRLELVLRKTPRPGYQNIRLGRIIEMRDGIVTLDDTVPPVGLVTRVHPAYEGYLSRVIGWIEAKLDTLARFAADPTSGGGMQATDYLMLMVLNRELPVLRHMQGLANLHPERLYEKLLALAGELSTFDHGARKAPDYARYDHQASRSGFTALVQDIQQLLARDVGRAVRLPLNEVRANSYAALVNDRSLFAKATFVIEVSSGLPLTQVQQEFPRLCKVGPSTAMKQIVSNNLPGIGLVHLPNPPRQIRVVSTSVYFLLDKSSDLWREFSTAPAIGMHFAGNWPDMKLECWAVPEGA
>NZ_CP015230.1|WP_046002620.1|2264270_2265830_-|OmpA-family-protein
MSDDDDKTVFGQPISPVSPPRSAPEKTVFGQPKPPPAPGGGYAPPSPDDTWHRGPLAPQPQPAPMPAAQPPRPAPQQPYYTPGTGQAAAGNGIFPEIGQAPQHQHAHQQPRISLADALNAKGSGAGKSSNPLIAASADLLVLLGRLRTGLVEMQAGPLIDHVTREIDGFERRAQAEGLPSQDVLDAKYALSATADDIVQNLPGANRGMWQEYSMAARFFGDRSSGVGFFQKMDEAMRAPGQRFHLLELMLTCLSLGFEGQYRAMPNGAVESARIRNAIYETLRRVQPRPDDDISPRWSAVPMGGRRNQGKLPLWIALSLSAVVVTGLFATLSTVLTQQSAEVRDGILALHRGQPSIAIERTQPVVRPYEAPPSTQMERLSAALESELETGQIELDRTNDWVLIRVSEALRFRSGSEDLTSDIDSLIASAAKALNAEQGPIRVVGHTDSVPMSGRGRFKSNEQLSKARAQTVADLLAAQLETPDRITVEGKGPVDPIADNGTREGRARNRRVEILIPREN
>NZ_CP015230.1|WP_005620924.1|2260636_2264269_-|type-VI-secretion-system-membrane-subunit-TssM
MRWFFNLFSQMFRWMKKPWARVAFAILGVLALIAAIWFGFPMTGFALAASIWFRAMVIGIFLAVLALVYGIRWRRRRRRAQELEDSLLHEPVGDASVLTERMQEAMAKLKKAGGKNYLYDLPWYVIIGPPAAGKTTALTNAGIEFPGQEALPDKAQGFGGTRNCDFWFAEDAVLIDTAGRYTMHDSDAAADKASWDAFLGLLKKGRPDQPVNGVILAFSIEDMMSGSSETIAAHAATVRARLAEIHEVLRIDFPVYVLFTKADLVAGFREYFSSFSLSRRKAAWGVTFQTKDRQLDTYKQAGTEFDLLLSRLSDEVIDRMNEEPDGASRIAIFGLPGQMGMLRDNICEFLRVVFEPTRYKTNAILRGFYFTSGTQEGTPVDQVLGEMSRNSDSSDMFQPAFMSGKGKSYFLHDLIKKVIFEERDWVGYDRIAMRRTAVLRSAALISIVLATLGTVGAFGYSYWQNATLTRSAEKDAVAFFDAARNELSRSVIDDSDPSAVMPYLQDLRDMTTGYGDTREPSFWEGMGLSRYQELSGATERAYSDGLERMLRPRLILHMENAIPQLIADEETAEVYRALKVYLLLGGEGQGDAEANDAAVVNYFETLWRAQFNSTGQYDEREQLKAHLTAMLALDGDRRPEIGIDPEILRKARESIVNLPLADQAYASIKERVATSGIADFNLVERLQGNVQQVLDTTDGAPLNTVGVPALYTFEGYWGYFLEELTSARSRLREDQWVLGEAATRVGYDTQLAGLEGELHRMYRLEFTAAWKEMLARIGLKSMSEDAPQYAALAAASSPVGSPLLNLVQAIESETRLVRLYEQLDNLDPAAVAASGGDLSASMGDAVFSRIYSQSGVFQRVAMDSFRNSSKVQAQAGAAGQAGAEDVQRRQVERISNDFAQWHSLLKGEPGQRPIDIVLASLGDLRENRRQAAVAPTPADEVMLNETLLALTMNNTALPAPLARLLNEAETEFRSEAQDASMAQLNRALNDDVSQFCRDFIAPLFPFGGGRHVSPAVFGQFFGPGGRMDRYYSSYLQPHVIRTPDGLRPAPGSAIGQRLSPQTLRQFDNAQAIQLAFFATGAPEPEVGMSVIHTDSSPSVELAVLSVNGASVRTQPGSSPAALSWPGQSSGVSVQLFPEKRNRDSTLSFADGRWDIVNFLRRGRAKVTGNVVDVRHEIGGRSINYRIEFDSTTVPFLMPELTNFSCPISLE
>NZ_CP015230.1|WP_005620926.1|2259965_2260631_-|type-VI-secretion-system-associated-protein-TagF
MTAQIGLLGKHPGYGDFLRANVETSVIEHLETWLEQALAEIRDQQGQAWPAFWQQAQDLRFWIGRAVLGRSLMGVMRCSQDRAGRRYPLILIAQGAAVAAPITDGDQSAYEALSAHFSAMQPGQGGSALLDGLQLQLPEEDEETARTGDTLWAHQPNGDLAALLDAAGGADAERALLNRSYWWSPATETKAAVWLGCAGLPSAAALHWLLAGAPLAREGAE
>NZ_CP015230.1|WP_005620928.1|2259180_2259966_-|serine/threonine-protein-phosphatase
MTNALKFGFETGLATDVGCRREINEDSLLARPDLGLWVVADGMGGHAAGDFASQTIVRYLDTVGCAVSPEDLVARTMERLHRANDVIRARSAELGGSTIGATVVIVLAHGPTFSCISAGDSRVYLHRAGQLVQQTRDHTEVNALLAAGTISETEAENWPRKNVITRAVGVDDTVKCDQIQGQLQSGDVLLLCSDGLTEHMKDHEIAQCLAALPPQQACDELIRETLARGAKDNVTVVALRCTQAPIGEVDALDEDVLDDLA
>NZ_CP015230.1|WP_005620930.1|2257117_2259184_-|serine/threonine-protein-kinase
MSDADKPEDDLTPEVHDEDDERTRLIAADPSSPPAPMPSSPSVPEGSEATELQPVPAPTTTEIKDPAQITLAPGTVINNNYRIQAALKSGGMGEVYRGVEVGTEDPVAIKAIRPDLIRDAQASEMFRREARTLRLLHDDAIVRYYNYVHDRDLDRYFLVMEFIDGIPLSDHIRQYGALPAAAGQTLIERIANGLAKAHAKGVVHRDLSPDNVMLASGIISEARLIDFGIAKAQTLSEGTIAGQFAGKFKYVAPEQLGHFGGQMGAAVDVYGLGLLAAAALRGKPLDMGSSIVEAVEARRKIPDLSDVPSQFRPLLSHMLEPDPTHRPATMRDVLNYLENPSAIPAHYFQDGFTPHNIGQAGATTASHLSLPPQGTMTGLQVPTPAHTSHVSAYPTAQTIAPNPFQEEPPKRRNGVLWAGLLCVVAAGGGWYAWQSGVLNVGAEQQTAAQEENTSAASNGDLPSVAGDTREGFLALLDTGACSFSTRLSTGQNAGRIETYSTTDGGFEGLPAAYEERFGARPSVLPREVNSEQCSALDFVRRLQGRWPHPIGLSLSADEVESGAALQARINSQVGRPVWVALVGPNGNLYNLTQRLSSTGSGGYTLDFGLTLAQGAEAAPQLILAVSSSTPLTRAALLRNGSSSARVLPEILDEIRSKNLEASAALAYVRLNPVSEASPEDTGEVPDQE
>NZ_CP015230.1|WP_005620932.1|2255285_2257055_+|FkbM-family-methyltransferase
MGLMTSSQAISKHAKGGRANTAATKSIKRFTAYNVDIALSLPTTTDHVQRTIRENGVFYEQQMLAELSALLPESPCIVDVGADIGNYSLFFALIAGARTICFEADPQVFSTLEQNIALNDMATQVEPHEVSLGAEPASGTSEHVATLDTYLADQHVDLIRLAPSGTEADVLRGATAVLEHSQPMVAVQPASLEALAEIEALLRPFGYRKTRRYGDAPVFLFEKGLKASADQGSYTQQILESVKHSLPQTTGIYAGLSTTSGNEVALRASVMSLLPQVDGLFVYLAGYSEAPSFLNKFDKIKYTISEETPDFSEVGRFWGLGQVEDAVFVTCSDEIIYPTDFTARMVAELAQTKGMGMVCVEGTLLVQATGDAQSQPASSSFALERELIRRRCVHIPATTACAFHTKTVPVSFAECDPGIPADAQIATYAETHNISRYVIPRPAAWLQTLKTERRTAGKTDKGALRTIPPLSLASSEDRVPIIVLSLEKDDNIISALSALKPKVRDLALCIVCDAATDRLKTLVSQHQCKWEIHLLERKSPLSEFYQKLLEENAERTTYLEVRGRGLEPLTLDDGPKEWIDATFQKNEHS
>NZ_CP015230.1|WP_040642312.1|2253812_2255279_+|glycosyltransferase-family-2-protein
MLDSTLSDNSSCLIFMPARNCEMFAAEAIRSVSRQTMDDVFILYVNDASEDQTGDIAQHYLKELFPGRHAYIRNETRIGKSHNIWKHLRPRAGEAEFIGILDADDQLADMTILDKLAQRYGAGKDVVWTNYFTDNGHRGMNAALDPELSPRKQRWSTSHFFSFRAALLKNIPESYYKDQEGNWFQGACDVALALPILDQTRNYEFIPTPAYRYTSSNHLSLHNSTPKVNAITSKIQLQNSNQVFAKPPLPLFTNAKVEESVSMHQPDTTATHSAAPLSTDIWSEKAAQLLIARHPTLLSAQAICRADHLSALQLWSISELLQSASGDCLFIGAPDTALILTALAKDTPEIHLTCLVEEKEDAPHLRARLALLGLSEQTKVISGPLAKVEMNQQSCFFPACTELEGLAPLSLIVVDGRASENVETYTAIALPAVSEHLAERSFHFCALTGEVSTAQKIATTLGQLTVGLEFCTGALGGTGLVCFPANQE
>NZ_CP015230.1|WP_110590781.1|2253105_2253618_+|histidine-phosphatase-family-protein
MIRHGETTANRDAIIAGRLNVSLTEQGRNQARALTQTHWPEPITVFCSPMERACETAHLGFPTSKSTVISGLHERDWGIFEGQPLSELPPRDRTPKDGEGWRDMVLRVHAAITEVCSIAVDSLPVLVCHSGVIRATRLLAKQEGVGIRPGNAHPILFDYRNGCHVETPLD
>NZ_CP015230.1|WP_005620937.1|2251996_2253067_+|MBL-fold-metallo-hydrolase
MSTITVLSGIGDKGPAAMRLDTGRHRWLLDCGFGPEANANFDPKWLDGVDAVFVTHDHIDHIGGAAYAVEAGLPIYATRRTSQALPPSAQVRELPERGATLIDGIRLTTGRNGHALGGVWFHFDLGEGLFYSGDWSEESDWFAFDPPPQAATAIIDCSYHLSDVPQSRRLEDLDALIDTLPGQILFPVPPSGRAGELALHLMRRFGPTAVLLDPECCHALRAALTSGGVAPSAGEIAPLLDRGPLDEARFLICDTPNADGGAAWAYVRAWRESGRLGRDAHVIFTGHMTAHARGIEAVEGGYFRRWNVHPPLSDQIAMIHRLGAKRFAPAFCTMPEDYLVEAGFGAQVFMHDTLDL
>NZ_CP015230.1|WP_040643336.1|2278039_2278669_+|hypothetical-protein
MTSDLNEINSPAGQPSSDNDDLDKTQPPLSALRNEIPTELYRQMPQLGRLTQNHPRDNEDGLTFLMRLRASTTPEDAVTFTAFAAKPKMAIWWGYECLRHAASELSANDRHMMELVATWTTYPDDENRFRTAREALYAPVRSPAVFLGLAVTWSGGSIAPNDPAQVPEHRAPRAINSAVLSCLSGAALNNRPIQLARFIDLAAPLFRSF
>NZ_CP015230.1|WP_046002090.1|2278725_2280051_+|type-VI-secretion-system-associated-FHA-domain-protein-TagH
MTLTLRLENFELLQDGSPAWITLQENSINVGRNRAMDWVLPDPSRHVSGHHFDVSFHDGAYWLTDVSTNGTFMQGQHHRIQGAVQLRGGERLVVGHYIIAVESGAAGVQPAAIPQPSYGTSDEEADPWDLGLQPQDPVNPLPRAPASAHAFDDVAQEFLQLTPQMPPAQAAPATPPPIPSPPPTTPSPYVPPAEPAAGQAAGQAPIAPMPMPSPASPAHPPQATPAPPPSQAMPAVAPPAQAAAVDNGAAVLRAFCEGAGLDPQLAGSADPEKLAHALGQAVSSATGEIMRMLQDRASVKQFTKGGERTMRNAHGNNPLKFLPDPHQAMDTMFLTPREGFMEGPESFASALADLRGHQQAVFAALQPALAAVLMGLSPEEIESSEEGRALLGGSRRSKLWDSYVARWDKKASEAEHGMLDVFLKAFAQAYADAAAKHGKFD
>NZ_CP015230.1|WP_005614118.1|2280144_2281503_+|hypothetical-protein
MRTSARATPLSDDLPCGPDLNASFDPAYEEYYFGAVGRLPGFYMQPGVERPDGSRSPDRLFDPKDVDHRAETREIDALLDRTRDLRLLSLQAQWDALAGNRSALRDTVEAMATLLETLPDAVHPSLEDGPAERRDAINDLNQTVTVVQPLMFMGLTGTTEVTLRKIRVAKGENAPLEHESEIELKPLLDALTNPGNKKQVEDAHQDFTTIRSAASRIKSACTTHPTSPFQPNFEQLFAVLDDILDVLTTARPDLAANAAPEPAPAETAAEKPDLQAPPALATARTANVEPLRTPVQIVSQLHARRVLESCEIYYRKNEPSSAALLLVTQARLLIGKPLVEALQALLPSQASAAVVDFGAPTGFLLGADRLAELSGALPDTSDAATELPQDPGPDPKIASAAQAAQALQSVEVYFRQTERSSPVPVLLKRAQSYLDMDFQSLIEELIPQENTA
>NZ_CP015230.1|WP_005614119.1|2281611_2282136_+|type-VI-secretion-system-contractile-sheath-small-subunit
MASDSGSSFIKRNRPPRVQIQYEDPFDSEQMVELPFVMGVMSDLSGNTPGVEKAPVEERTFADVTKDTVDDYMASLQPGMTFMAENRLSGDGGEKLGVELKFESLADLEPAAIARQVPALKKLLEAREQLANLQRYMASKPKAQDHLKKLLEDPELMAALAERAAKEETDGEDA
>NZ_CP015230.1|WP_005614120.1|2282172_2283666_+|type-VI-secretion-system-contractile-sheath-large-subunit
MDNEAQVQAGEGAAELDELSEFSDILKQTIKPRTDIAAQEVDNAVVALVREALDDQSVVAEDMIDTVDAMLAKLDKKLSDQMNAIIHNEEFQQFEASWRGLAYTLNNAETDATLRVKVLNVSKKELQGMMRRFPGAKWDKSPLFNIVYEQNLGTLGGKPFGCLVGDYHFDHSSPDVNLLNSIGKISEAALAPFISGASPNLLGLDDWNEISAPPDLSEIFETPEYAQWNSLRDSENSRFVALTLPRVLSREPYSQNSNSVVEEFNFEEETDGHAGTQYAWMNSAHAMAANINRAFKEHGWTVRIRGVTSGGEVANLPTHVFDTGDGAKDLKCPTEVSITDRREGELSKAGLIGLIHRQHTDKAAFIGAQSLYRPKTYVDDQATASDNMSSRIPYIFAVSRFSHYLKAMVRDKIGQSPDVSQLQRDLQAWVNKYVSGNPESASEMEKAKKPLAGAKVEVVEDELNPGYYQGKFFLKPHFQMEGMDIGMSLVSKLPSGK
>NZ_CP015230.1|WP_005614121.1|2283716_2284214_+|type-VI-secretion-system-tube-protein-Hcp
MAIDCFLKLDNGIVGECQDDKHKDWIDILSWGWSMSQSGTTHMGGGGGGGKVDVQDIQVTKYVDKATHDLVKRCCSGEHIKSGQLVVRKSGGTAPVDYLKIDFEDVMITNYQTGGSKDGLDRVQETLTLNFRRFQVTYTFQEQSGAAGPESLAGWEIAENKEWGK
>NZ_CP015230.1|WP_005614123.1|2284352_2284946_+|hypothetical-protein
MRRGDADNSETGDPRWQTGRKAKTSILQVFRASHNEKDAHHRREISGDGITKLTSARKQRRFGVSETELRQHLEADLAALLNTIHLEAICPLDDAPHVADSIVNYGFRDLSGLGKVALNTPAVVATLRESLIRFEPRLIAESLDVQIRDTSNGKTHHLAVFVTAEMLGDPVDVSLDFDAEIDLGAGKMSLSHLRVNA
>NZ_CP015230.1|WP_005614124.1|2284942_2286871_+|type-VI-secretion-system-baseplate-subunit-TssF
MRRALRDAYNQELGLLKERAAEFAGEYPGLADRLGGLLEENMDPAVAGLLEGSAFLSAQVKVKMDEEYQTFTRELLEQIFPDALAPTPSVMLVRAQAPADSSEIESGLSFTAGEYMDARFLDAQQRVSCRFALASPLTVWPIGVTQATYHASAGPISALGQEIAASTKAGLVVDVARLDNDGQPNPTETLNTLEMDSLTLNFTAPMDEAAILYEQIFCDCTRVSLRWLNAQGDPVFARLATNQLHKIGFDEGEQLFPHQKRLFDGFARLREFFVFPRKFLGLRLTGLRDVLPHVRSNTVQLVFEFSSPRQRLAANLDPQDLAVNAAPAVNLFEEMSSHLHLDRKRHEYTITPNSSPITHYEVHHITEVWAHYTDRQSKSEVHPLYALPPEGRSARQALYYTTRRKPRRRTLAEQRNGIPRNLYRGTETLISLYEPPEQEPANRLQVKLLCSNRHLPEYLPIADSAESFHLCDDQTVALKCLAGPSPPRDSLADRETTANHRTTAGDTYWRLLSYLSLGTSGVQSPDGGMSAASLREMLSLFADLSDSVSEAQISGVRNLECTPVTRTIAAPDGYHTARGLLIRVIFDETEFESTGIVPLGAVLDHFFAEYAAVNSFTQTVIHSLQRGEITRFAPRSGTGPLL
>NZ_CP015230.1|WP_005614125.1|2286867_2287989_+|type-VI-secretion-system-baseplate-subunit-TssG
MSGDVASAAASPAATRVSETLERREHQEKAASSVGLFSLLRELERRAGHKPAIGQNKRLRDAIVHLGQDPALAFPTRDVARVDLTQSTPRLRAQFMGLFGAFGALPLNWTEEVESWFSAGDESFVAFCDIFTARFQELFFRAWSDARAISQFDHADSDRFQAYILSLLGCGTAANRSGARPDDMAKLHLAPLATGRVKSPVRLRQMLELHFNGRARFRIEEHVPCWLELEPDAHCLLGAQGCTLGENSVLGGYVQSLSAKIRLHVMLSDLAQYQRFLPGGPDHAALQDIVFWYLGQAFDIETALWLPRPQISTAVLGQSTQVGWLACVGSISTPDLPTATSPLPRSADGYLQVSRYPLLPEPFDQDELKSSAA
>NZ_CP015230.1|WP_046002091.1|2288021_2290745_+|type-VI-secretion-system-ATPase-TssH
MTEITIEKYAGKMNRAGYDAFLQGMRDARTARNRYVDLCHWLFHSVSNQNADISVTLRQLNLDRGRVLKDLSGAMDRLDKNVTETPGISDHLADALNHAWTYATLFFGEAQIRTGHVLTALLNDPSLRRQLLRYSSVFEQISAEQLGQDSRSLWAGSEEDTMRPMDGANLSTAEDSGAASQGKGGTTALGRFAKDMTAAAGEMDPIKGRNDEIRQLIDVLLRRRQNNPILTGEAGVGKTAVVEGFAQLLAAGDVPPKLKGTRLFELDIQSMQAGASIKGEFEQRLKSVIDEVQSSPEPIILFIDEAHTLIGAGGQAGTGDAANLLKPALARGTLRTIAATTWSEYRQHIEKDPALTRRFQPVNVDEPSIEVCCDMLRGILGPMQDHHKVRISDAAIVSAVTLSHRYIPARQLPDKAVSLLDTACARVALSQSALPARITATRARIDALEAELAGKTEARDLGESHEDRIAEIKTEIIELTDRLAALDTGYAREKEIVDQVLDLRARLKAQTSDTPGAQDAASSETEDAGQPEVDAPDATADIDPDALRREMQAQMTALDETNPDDRMVFAHVDEQAIAAVISDWTGIPAGRMMQDELDAVLNLSDDLRARVIGQDHGLKSIAKRIEISRAGLGNPNKPIGVFMLCGPSGVGKTETALALAEALYGGEQNVITINMSEFQEAHTVSLLKGAPPGYVGYGEGGRLTEAVRRKPYSVVLLDEIEKAHPDVHEIFFQVFDKGVMEDGNGRMIDFKNTLILLTSNVGTEVIMDRVGPDGSAADLDLEELDVALKPSLLEVFPPALLGRIVTIPYLPLSTEVLGGITRLKLSAVEKRLKGAHGTELVYGDDVIDHITSLCRDPDSGGRMIDNIISNSILPELSRKVLKTLSTGGEIHRVTVTADTEGFHYALS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015230_1	1.1\|650594\|28\|NZ_CP015230\|CRISPRCasFinder	650594-650621	28	NZ_CP010408	Streptomyces vietnamensis strain GIMV4.0001 plasmid pSVL1, complete sequence	120293-120320	5	0.821
NZ_CP015230_2	2.1\|2271071\|25\|NZ_CP015230\|CRISPRCasFinder	2271071-2271095	25	MT162467	Synechococcus phage S-H34, complete genome	147048-147072	5	0.8
NZ_CP015230_1	1.1\|650594\|28\|NZ_CP015230\|CRISPRCasFinder	650594-650621	28	NZ_CP021405	Celeribacter manganoxidans strain DY25 plasmid pDY25-A, complete sequence	76119-76146	6	0.786
NZ_CP015230_1	1.1\|650594\|28\|NZ_CP015230\|CRISPRCasFinder	650594-650621	28	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	965364-965391	7	0.75
NZ_CP015230_1	1.1\|650594\|28\|NZ_CP015230\|CRISPRCasFinder	650594-650621	28	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	1122762-1122789	7	0.75
NZ_CP015230_1	1.1\|650594\|28\|NZ_CP015230\|CRISPRCasFinder	650594-650621	28	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	81860-81887	7	0.75
NZ_CP015230_1	1.1\|650594\|28\|NZ_CP015230\|CRISPRCasFinder	650594-650621	28	NZ_CP017943	Phyllobacterium zundukense strain Tri-48 plasmid unnamed2, complete sequence	505608-505635	8	0.714
NZ_CP015230_1	1.1\|650594\|28\|NZ_CP015230\|CRISPRCasFinder	650594-650621	28	NZ_CP015008	Aminobacter aminovorans strain KCTC 2477 plasmid pAA03, complete sequence	39725-39752	8	0.714
NZ_CP015230_1	1.1\|650594\|28\|NZ_CP015230\|CRISPRCasFinder	650594-650621	28	AP021851	Deinococcus grandis ATCC 43672 plasmid: pDEGR-2 DNA, complete genome	8988-9015	8	0.714

1. spacer 1.1|650594|28|NZ_CP015230|CRISPRCasFinder matches to NZ_CP010408 (Streptomyces vietnamensis strain GIMV4.0001 plasmid pSVL1, complete sequence) position: , mismatch: 5, identity: 0.821

ggggcgggccgcgccgctcgcagggaaa	CRISPR spacer
tgtgcgggccgcgccgctcgcaggggcc	Protospacer
 * **********************.

2. spacer 2.1|2271071|25|NZ_CP015230|CRISPRCasFinder matches to MT162467 (Synechococcus phage S-H34, complete genome) position: , mismatch: 5, identity: 0.8

acccttcagattgttgaccgcacca	CRISPR spacer
gaagttcagattgttgaacgcacca	Protospacer
.   ************* *******

3. spacer 1.1|650594|28|NZ_CP015230|CRISPRCasFinder matches to NZ_CP021405 (Celeribacter manganoxidans strain DY25 plasmid pDY25-A, complete sequence) position: , mismatch: 6, identity: 0.786

ggggcgggccgcgccgctcgcagggaaa	CRISPR spacer
gtggcgggcagcgccgcgcgcagggccg	Protospacer
* ******* ******* *******  .

4. spacer 1.1|650594|28|NZ_CP015230|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 7, identity: 0.75

ggggcgggccgcgccgctcgcagggaaa	CRISPR spacer
gcggcgggctgcgccgctcgcagcagct	Protospacer
* *******.************* ..

5. spacer 1.1|650594|28|NZ_CP015230|CRISPRCasFinder matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.75

ggggcgggccgcgccgctcgcagggaaa	CRISPR spacer
caggcggggcgcgccggtcgcagggccc	Protospacer
 .****** ******* ********

6. spacer 1.1|650594|28|NZ_CP015230|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.75

ggggcgggccgcgccgctcgcagggaaa	CRISPR spacer
gcggcgggctgcgccgctcgcagcagct	Protospacer
* *******.************* ..

7. spacer 1.1|650594|28|NZ_CP015230|CRISPRCasFinder matches to NZ_CP017943 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.714

ggggcgggccgcgccgctcgcagggaaa	CRISPR spacer
aacgcgcgccgcgccgctcgcaggcctg	Protospacer
.. *** *****************   .

8. spacer 1.1|650594|28|NZ_CP015230|CRISPRCasFinder matches to NZ_CP015008 (Aminobacter aminovorans strain KCTC 2477 plasmid pAA03, complete sequence) position: , mismatch: 8, identity: 0.714

ggggcgggccgcgccgctcgcagggaaa	CRISPR spacer
aacgcgcgccgcgccgctcgcaggcctg	Protospacer
.. *** *****************   .

9. spacer 1.1|650594|28|NZ_CP015230|CRISPRCasFinder matches to AP021851 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-2 DNA, complete genome) position: , mismatch: 8, identity: 0.714

ggggcgggccgcgccgctcgcagggaaa	CRISPR spacer
cgggcgggcctcgccgctcgcaccctgg	Protospacer
 ********* ***********    ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

806888 : 839539

Thiobacimonas_phage(59.26%)

head,integrase

attL 805387:805407|attR 845666:845686

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
805387:805407	attL	NA	NA	NA	NA
WP_065317470.1\|806888_811412_-	hypothetical protein	G8DH58	Emiliania_huxleyi_virus	1.3e-04	37.0
WP_005650793.1\|811408_811822_-	hypothetical protein	G8DH57	Emiliania_huxleyi_virus	4.5e-13	37.8
WP_005650796.1\|811809_812400_-	hypothetical protein	A0A0U2C133	Paracoccus_phage	7.8e-35	44.6
WP_052699555.1\|812402_813053_-	hypothetical protein	NA	NA	NA	NA
WP_046002805.1\|813052_815611_-	hypothetical protein	A0A291AUU3	Sinorhizobium_phage	5.8e-18	39.0
WP_005651794.1\|815613_815889_-	hypothetical protein	NA	NA	NA	NA
WP_005651792.1\|815966_816296_-	hypothetical protein	NA	NA	NA	NA
WP_046002806.1\|816311_817244_-	hypothetical protein	A0A1B0T6E1	Thiobacimonas_phage	3.5e-98	57.4
WP_009176313.1\|817244_817388_-	hypothetical protein	NA	NA	NA	NA
WP_005650023.1\|817384_817816_-	hypothetical protein	NA	NA	NA	NA
WP_005650021.1\|817815_818244_-	DUF1320 domain-containing protein	A0A1B0T6F3	Thiobacimonas_phage	9.3e-38	54.9
WP_005650018.1\|818353_818869_-	hypothetical protein	NA	NA	NA	NA
WP_005650015.1\|818880_819777_-\|head	phage head protein	M4SRT6	Rhodobacter_phage	2.0e-119	69.1
WP_005650011.1\|819788_820220_-	hypothetical protein	M4ST95	Rhodobacter_phage	1.4e-38	56.0
WP_040643310.1\|820219_821302_-	hypothetical protein	A0A1B0T6E7	Thiobacimonas_phage	4.6e-57	39.0
WP_005650006.1\|821589_823182_+	hypothetical protein	NA	NA	NA	NA
WP_005650005.1\|823184_823658_-	phage virion morphogenesis protein	A0A1B0T6E8	Thiobacimonas_phage	2.3e-29	42.4
WP_046002807.1\|823660_824797_-	virion morphogenesis protein	A0A1B0T6H8	Thiobacimonas_phage	5.2e-88	59.2
WP_005615236.1\|824789_826451_-	DUF935 domain-containing protein	A0A1B0T6F2	Thiobacimonas_phage	5.3e-182	61.3
WP_005615237.1\|826454_826745_-	hypothetical protein	NA	NA	NA	NA
WP_005615239.1\|826757_828449_-	hypothetical protein	M4SRU6	Rhodobacter_phage	4.2e-166	54.2
WP_005615243.1\|828445_828643_-	hypothetical protein	NA	NA	NA	NA
WP_005615246.1\|828639_829197_-	DUF3486 family protein	A0A1B0T6G0	Thiobacimonas_phage	4.8e-34	57.3
WP_005615249.1\|829200_829497_-	hypothetical protein	A0A1B0T6F4	Thiobacimonas_phage	2.6e-31	68.4
WP_005615251.1\|829504_829876_-	DUF2730 family protein	A0A1B0T6F6	Thiobacimonas_phage	1.1e-13	39.8
WP_005615252.1\|829875_830415_-	hypothetical protein	A0A2I7R2S9	Vibrio_phage	1.0e-17	32.5
WP_005615253.1\|830428_831298_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0T6G1	Thiobacimonas_phage	2.3e-96	60.0
WP_005615254.1\|831383_831788_-	hypothetical protein	M4SNV1	Rhodobacter_phage	4.5e-26	52.5
WP_005615255.1\|831784_832240_-	regulatory protein GemA	A0A1B0T6H1	Thiobacimonas_phage	8.3e-45	62.6
WP_110590786.1\|832241_832490_-	hypothetical protein	NA	NA	NA	NA
WP_005615257.1\|832499_832775_-	hypothetical protein	NA	NA	NA	NA
WP_005615260.1\|832788_833466_-	DUF3164 family protein	M4STB6	Rhodobacter_phage	5.2e-75	64.0
WP_005615263.1\|833532_833907_-	hypothetical protein	A0A1B0T6G8	Thiobacimonas_phage	1.5e-28	55.4
WP_005615265.1\|833903_834452_-	hypothetical protein	A0A1B0T6J7	Thiobacimonas_phage	4.1e-38	47.5
WP_005615268.1\|834448_835237_-	ATP-binding protein	A0A1B0T6H3	Thiobacimonas_phage	7.1e-92	70.4
WP_005615272.1\|835249_837358_-\|integrase	integrase	A0A1B0T6H2	Thiobacimonas_phage	3.2e-240	61.0
WP_005615274.1\|837357_838212_-	ParB N-terminal domain-containing protein	A0A1B0T6H9	Thiobacimonas_phage	1.1e-85	60.7
WP_005615276.1\|838229_838487_-	hypothetical protein	NA	NA	NA	NA
WP_005615279.1\|838486_838783_-	hypothetical protein	NA	NA	NA	NA
WP_065317482.1\|838870_839539_+	helix-turn-helix transcriptional regulator	A5X9F5	Aeromonas_virus	1.2e-23	34.1
845666:845686	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1651092 : 1686108

Paracoccus_phage(21.43%)

capsid,protease,head,tail,portal,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005658666.1\|1651092_1652142_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_046002139.1\|1652226_1655748_-	hypothetical protein	NA	NA	NA	NA
WP_040644290.1\|1655809_1656271_+	peroxiredoxin	NA	NA	NA	NA
WP_046002138.1\|1656519_1657362_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_005645675.1\|1657599_1658931_+	peptidoglycan DD-metalloendopeptidase family protein	G9BW84	Planktothrix_phage	5.0e-21	47.7
WP_005645679.1\|1658920_1659451_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_005645682.1\|1659788_1660319_+	hypothetical protein	NA	NA	NA	NA
WP_005634592.1\|1660526_1661075_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	7.0e-38	55.6
WP_005634594.1\|1661067_1661574_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	2.1e-44	59.4
WP_046002137.1\|1661855_1663046_+	phosphoglycerate kinase	NA	NA	NA	NA
WP_046002136.1\|1663257_1665030_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_005654255.1\|1665260_1665584_+	hypothetical protein	NA	NA	NA	NA
WP_005654258.1\|1665812_1666112_+	septum formation initiator	NA	NA	NA	NA
WP_005654260.1\|1666501_1667515_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
WP_046002135.1\|1667531_1668911_+	pyruvate dehydrogenase complex E1 component subunit beta	NA	NA	NA	NA
WP_046002134.1\|1668922_1670248_+	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	NA	NA	NA	NA
WP_005633353.1\|1670442_1671249_-	serine O-acetyltransferase	NA	NA	NA	NA
WP_005633355.1\|1671610_1671817_+	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	3.9e-10	49.2
WP_046002187.1\|1671858_1672185_-	hypothetical protein	NA	NA	NA	NA
WP_046002133.1\|1672193_1676114_-	phage host specificity protein	A0A0B5A7K5	Paracoccus_phage	2.0e-235	40.2
WP_046002132.1\|1676172_1676601_-	peptidase	A0A1V0DYB6	Dinoroseobacter_phage	3.2e-30	46.2
WP_046002131.1\|1676597_1677476_-	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	2.5e-61	45.0
WP_005676643.1\|1677475_1678108_-	DUF2460 domain-containing protein	A0A0K1Y6G4	Rhodobacter_phage	7.3e-47	45.5
WP_046002130.1\|1678121_1678781_-\|tail	phage tail tape measure protein	A0A1W6JP49	Morganella_phage	1.8e-11	31.0
WP_046002129.1\|1678784_1679000_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_046002128.1\|1678996_1679320_-	gene transfer agent family protein	NA	NA	NA	NA
WP_011538405.1\|1679323_1679737_-\|tail	phage major tail protein, TP901-1 family	A0A1J0GVL1	Pseudoalteromonas_phage	1.4e-06	34.2
WP_046002127.1\|1679772_1680180_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_046002126.1\|1680176_1680515_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_046002125.1\|1680511_1681114_-	hypothetical protein	NA	NA	NA	NA
WP_046002124.1\|1681289_1682486_-\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	2.7e-66	44.3
WP_046002123.1\|1682506_1683079_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	6.8e-28	50.0
WP_005685939.1\|1683114_1683339_-	hypothetical protein	NA	NA	NA	NA
WP_046002122.1\|1683331_1684537_-\|portal	phage portal protein	W8ECU7	Geobacillus_phage	4.0e-62	36.9
WP_046002186.1\|1684821_1686108_-	DNA-packaging protein	A0A1V0DY66	Dinoroseobacter_phage	2.0e-72	39.0

DBSCAN-SWA_3

2964908 : 3079090

120

Rhodobacter_phage(15.62%)

transposase,capsid,protease,head,tail,portal,integrase,tRNA,terminase

attL 2996513:2996530|attR 3080563:3080580

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005619588.1\|2964908_2965184_+\|transposase	transposase	NA	NA	NA	NA
WP_005619585.1\|2965684_2965903_+	hypothetical protein	NA	NA	NA	NA
WP_005619582.1\|2965902_2967366_+	TolC family protein	NA	NA	NA	NA
WP_009177812.1\|2967376_2968735_+	copper oxidase	NA	NA	NA	NA
WP_005619578.1\|2968781_2969498_+	cupredoxin	NA	NA	NA	NA
WP_040642164.1\|2969567_2970806_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_005619572.1\|2971980_2974131_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_040642177.1\|2975301_2975625_+	DUF3768 domain-containing protein	NA	NA	NA	NA
WP_052032010.1\|2975697_2976063_+	DUF3768 domain-containing protein	L7TKV8	Rhizobium_phage	2.5e-15	39.2
WP_005619563.1\|2977002_2977284_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005619561.1\|2977487_2978639_+	hypothetical protein	NA	NA	NA	NA
WP_080929567.1\|2979203_2979560_+	nuclease	NA	NA	NA	NA
WP_005619555.1\|2979741_2983683_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_110590720.1\|2983870_2984185_+	hypothetical protein	NA	NA	NA	NA
WP_005619551.1\|2984408_2984909_+	hypothetical protein	NA	NA	NA	NA
WP_005619549.1\|2985052_2985373_-	H-NS histone family protein	NA	NA	NA	NA
WP_040642153.1\|2986439_2986619_-	hypothetical protein	NA	NA	NA	NA
WP_110590715.1\|2987245_2987410_+	CopG family transcriptional regulator	NA	NA	NA	NA
WP_005619545.1\|2987419_2987902_+	hypothetical protein	NA	NA	NA	NA
WP_005619543.1\|2987906_2988683_+	deoxycytidine deaminase-like protein	NA	NA	NA	NA
WP_040642149.1\|2989355_2990027_-	hypothetical protein	NA	NA	NA	NA
WP_005619536.1\|2990039_2990528_-	TIR domain-containing protein	NA	NA	NA	NA
WP_005619533.1\|2990655_2991084_-	hypothetical protein	NA	NA	NA	NA
WP_080929566.1\|2991899_2992082_-	hypothetical protein	NA	NA	NA	NA
WP_005619529.1\|2992381_2992633_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005619527.1\|2992765_2993167_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_131664960.1\|2993228_2994140_+	hypothetical protein	NA	NA	NA	NA
WP_157888506.1\|2994270_2995057_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-17	36.7
WP_005620366.1\|2995323_2995623_-	phospholipase	G4KK81	Yersinia_phage	1.1e-08	39.8
WP_005620364.1\|2995625_2996789_-	hypothetical protein	NA	NA	NA	NA
2996513:2996530	attL	NA	NA	NA	NA
WP_052699558.1\|2997133_2999287_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.0e-44	29.2
WP_040641282.1\|2999455_3000631_-\|integrase	tyrosine-type recombinase/integrase	A0A221SAN4	Ralstonia_phage	3.2e-48	35.5
WP_005608770.1\|3001114_3001798_+	UPF0149 family protein	NA	NA	NA	NA
WP_005608772.1\|3002012_3002570_-	hypothetical protein	NA	NA	NA	NA
WP_040641283.1\|3002703_3003747_+	Hint domain-containing protein	NA	NA	NA	NA
WP_005628341.1\|3004169_3005135_+\|integrase	site-specific integrase	A0A1B1P9F9	Acinetobacter_phage	1.9e-67	45.6
WP_005628339.1\|3005668_3005851_+	hypothetical protein	NA	NA	NA	NA
WP_005628336.1\|3005859_3006414_+	hypothetical protein	NA	NA	NA	NA
WP_005628333.1\|3006410_3006929_+	hypothetical protein	NA	NA	NA	NA
WP_040642804.1\|3006915_3008832_+	AAA family ATPase	NA	NA	NA	NA
WP_005628327.1\|3009029_3010262_-	type II restriction enzyme	E5E3X4	Burkholderia_phage	1.4e-94	45.7
WP_005628323.1\|3010280_3010736_-	DNA mismatch endonuclease Vsr	E5E3X5	Burkholderia_phage	7.8e-43	54.4
WP_005628321.1\|3010728_3011961_-	DNA (cytosine-5-)-methyltransferase	E5E3X6	Burkholderia_phage	4.9e-124	57.7
WP_005628319.1\|3012232_3012469_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_046002360.1\|3012529_3013036_-	hypothetical protein	NA	NA	NA	NA
WP_046002361.1\|3013053_3013335_-	hypothetical protein	NA	NA	NA	NA
WP_005623529.1\|3013645_3013909_-	helix-turn-helix transcriptional regulator	F8TUW4	EBPR_podovirus	5.2e-23	64.1
WP_110590981.1\|3013995_3014217_+	hypothetical protein	NA	NA	NA	NA
WP_005623523.1\|3014213_3014537_+	hypothetical protein	NA	NA	NA	NA
WP_005623519.1\|3014533_3014800_+	hypothetical protein	NA	NA	NA	NA
WP_005623515.1\|3014824_3015451_+	hypothetical protein	NA	NA	NA	NA
WP_005623511.1\|3015447_3016101_+	hypothetical protein	NA	NA	NA	NA
WP_005623508.1\|3016296_3016881_+	hypothetical protein	NA	NA	NA	NA
WP_005623504.1\|3016877_3017609_+	hypothetical protein	NA	NA	NA	NA
WP_005623501.1\|3017863_3018061_-	hypothetical protein	NA	NA	NA	NA
WP_005623498.1\|3018101_3018371_-	DUF982 domain-containing protein	NA	NA	NA	NA
WP_046002362.1\|3018929_3019136_-	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	1.0e-13	55.6
WP_046002363.1\|3019464_3019827_+	HNH endonuclease	Q3HR06	Burkholderia_phage	1.0e-08	41.0
WP_039983245.1\|3019944_3020424_+\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA
WP_046002364.1\|3020420_3022256_+\|terminase	terminase	A0A0U2C138	Paracoccus_phage	3.9e-141	48.4
WP_052699535.1\|3022255_3023572_+\|portal	phage portal protein	A0A0F7L418	uncultured_marine_virus	3.4e-83	43.2
WP_009177939.1\|3023583_3024177_+\|head,protease	HK97 family phage prohead protease	A0A0F7L115	uncultured_marine_virus	3.5e-43	54.6
WP_046002367.1\|3024262_3025546_+\|capsid	phage major capsid protein	B4UTP3	Rhizobium_phage	1.2e-80	42.0
WP_005636639.1\|3025549_3026122_+	hypothetical protein	NA	NA	NA	NA
WP_110590724.1\|3026124_3026451_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_005636646.1\|3026453_3026906_+	HK97 gp10 family phage protein	A0A0U2C0P4	Paracoccus_phage	2.8e-24	41.6
WP_005636649.1\|3026908_3027301_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_005636651.1\|3027293_3027713_+	hypothetical protein	A0A0U2BX03	Paracoccus_phage	1.8e-30	51.4
WP_005636653.1\|3027712_3028057_+	hypothetical protein	NA	NA	NA	NA
WP_157859741.1\|3028197_3028353_+	hypothetical protein	NA	NA	NA	NA
WP_052699537.1\|3028349_3030329_+	hypothetical protein	A0A1J0GUY9	Halomonas_phage	7.6e-18	30.4
WP_005665322.1\|3030328_3030991_+	hypothetical protein	NA	NA	NA	NA
WP_005665323.1\|3030987_3031575_+	hypothetical protein	I3UM13	Rhodobacter_phage	4.8e-37	42.6
WP_005665325.1\|3031571_3031997_+	hypothetical protein	I3UM14	Rhodobacter_phage	3.3e-19	39.7
WP_046002369.1\|3032064_3033804_+	fibronectin type III domain-containing protein	H6WBM7	Rhodobacter_phage	1.3e-61	34.3
WP_005629795.1\|3034996_3035320_+	hypothetical protein	A0A2I7QJM6	Vibrio_phage	1.0e-17	66.2
WP_040642880.1\|3035361_3035697_+	hypothetical protein	NA	NA	NA	NA
WP_005629800.1\|3035753_3036080_+	hypothetical protein	NA	NA	NA	NA
WP_052699560.1\|3036142_3036865_+	lysozyme	A0A0K1Y6F2	Rhodobacter_phage	2.3e-41	53.9
WP_046002899.1\|3036861_3037137_+	hypothetical protein	NA	NA	NA	NA
WP_080929655.1\|3037612_3038131_+	acyloxyacyl hydrolase	NA	NA	NA	NA
WP_005616412.1\|3038823_3039627_-	metallophosphoesterase	NA	NA	NA	NA
WP_005616415.1\|3039623_3040574_-	diacylglycerol kinase catalytic subunit	NA	NA	NA	NA
WP_005616417.1\|3040754_3042137_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_005616421.1\|3042230_3043736_-	aldehyde dehydrogenase (NADP(+))	NA	NA	NA	NA
WP_005616424.1\|3043732_3044740_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_005616427.1\|3044742_3045462_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_005616429.1\|3045463_3046375_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_005616431.1\|3046371_3047547_-	L-rhamnonate dehydratase	Q6A202	Oenococcus_phage	2.7e-31	27.8
WP_005616433.1\|3047785_3048769_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_009177759.1\|3048825_3049389_+	TRAP transporter small permease subunit	NA	NA	NA	NA
WP_005616437.1\|3049385_3050666_+	TRAP transporter large permease	NA	NA	NA	NA
WP_005616440.1\|3050750_3052244_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_065317481.1\|3052254_3053556_-	hypothetical protein	NA	NA	NA	NA
WP_052032036.1\|3053606_3054344_-	uroporphyrinogen-III synthase	NA	NA	NA	NA
WP_005651894.1\|3054418_3055516_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	5.3e-69	42.1
WP_005651893.1\|3055512_3056475_+	NAD(P)-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_005651891.1\|3056476_3056749_+	YciI family protein	NA	NA	NA	NA
WP_005651888.1\|3056748_3057171_+	EVE domain-containing protein	NA	NA	NA	NA
WP_005651885.1\|3057228_3057624_+	DUF1761 domain-containing protein	NA	NA	NA	NA
WP_005651880.1\|3057824_3058166_-	DUF2853 family protein	NA	NA	NA	NA
WP_157859732.1\|3058236_3058386_-	hypothetical protein	NA	NA	NA	NA
WP_005651878.1\|3058394_3059780_-	adenosylhomocysteinase	S4W1G4	Pandoravirus	8.2e-43	33.0
WP_040643365.1\|3059918_3060233_-	hypothetical protein	F4YXP2	Roseobacter_phage	1.0e-09	34.1
WP_040643363.1\|3060475_3061072_+	HD family hydrolase	A0A0K1Y6I9	Rhodobacter_phage	1.0e-18	48.1
WP_046002031.1\|3061074_3062292_-	glycosyltransferase family 61 protein	NA	NA	NA	NA
WP_005627563.1\|3062299_3062854_-	ActR/PrrA/RegA family redox response regulator transcription factor	NA	NA	NA	NA
WP_005627565.1\|3062935_3063559_-	SCO family protein	NA	NA	NA	NA
WP_005627567.1\|3063677_3065075_+	ActS/PrrB/RegB family redox-sensitive histidine kinase	NA	NA	NA	NA
WP_005627569.1\|3065160_3066711_+	hypothetical protein	NA	NA	NA	NA
WP_005627572.1\|3066752_3067229_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_005627574.1\|3067225_3068224_+	phosphotransferase	NA	NA	NA	NA
WP_040642777.1\|3068241_3068910_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_046002032.1\|3068902_3071836_+	double-strand break repair protein AddB	NA	NA	NA	NA
WP_046002033.1\|3071832_3075198_+	double-strand break repair helicase AddA	U5PSZ2	Bacillus_phage	1.1e-05	60.0
WP_152334345.1\|3075254_3075581_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	5.6e-19	50.0
WP_005616102.1\|3075725_3075920_-	DUF1127 domain-containing protein	NA	NA	NA	NA
WP_005616104.1\|3076154_3076712_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_005616105.1\|3076708_3077764_+	hypothetical protein	NA	NA	NA	NA
WP_005616107.1\|3077779_3079090_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A173GFL6	Erwinia_phage	5.0e-42	28.3
3080563:3080580	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3248438 : 3257803

Cedratvirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005608801.1\|3248438_3250034_+	phosphoglycerate dehydrogenase	A0A2R8FCS0	Cedratvirus	7.0e-46	38.3
WP_005608803.1\|3250215_3250953_+	serine/threonine protein phosphatase	K4JNE2	Caulobacter_virus	7.2e-30	35.3
WP_005608806.1\|3251170_3252202_-	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	1.7e-13	64.7
WP_005608809.1\|3252218_3253403_-	glycine C-acetyltransferase	G9E4Q1	Emiliania_huxleyi_virus	1.4e-35	29.7
WP_005608813.1\|3253567_3254134_-	helix-turn-helix transcriptional regulator	I3VYZ1	Thermoanaerobacterium_phage	2.1e-05	43.3
WP_005608815.1\|3254242_3255418_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA
WP_005608817.1\|3255520_3257047_-	2-polyprenylphenol 6-hydroxylase	A0A2P0VMP1	Tetraselmis_virus	4.8e-20	28.7
WP_005608820.1\|3257050_3257803_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	A0A097BYE1	Leuconostoc_phage	7.9e-08	26.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP015234

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

45640 : 55485

Paramecium_bursaria_Chlorella_virus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005617272.1\|45640_47074_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	9.3e-50	28.1
WP_005617269.1\|47079_48246_+	nucleotide sugar dehydrogenase	O41091	Paramecium_bursaria_Chlorella_virus	4.0e-107	53.9
WP_005617266.1\|48374_49250_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	4.2e-93	58.3
WP_005617262.1\|49246_50092_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	7.5e-31	40.8
WP_005617259.1\|50157_51210_-	dTDP-glucose 4,6-dehydratase	K7QJG5	Escherichia_phage	2.7e-91	50.3
WP_005617256.1\|51206_52400_-	acyltransferase	B5WZU0	Pseudomonas_phage	1.7e-17	30.3
WP_005617254.1\|52405_52954_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.7e-39	45.6
WP_046002285.1\|53131_54379_+	glycosyltransferase	NA	NA	NA	NA
WP_005616218.1\|54546_55485_-	GDP-L-fucose synthase	M1HWW2	Paramecium_bursaria_Chlorella_virus	5.8e-85	52.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015231

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP015230

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP015234

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection