CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_021089	Wolbachia endosymbiont of Drosophila simulans wHa, complete sequence	18 crisprs	RT,cas3	8	5	10	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_021089_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021089_1

51304-51408

Orphan

Consensus_repeat	Method
CGTCATCCCGCTACTTGTTAGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021089_1

>merge|NC_021089|1|51304-51408|CRISPRCasFinder
CGTCATCCCGCTACTTGTTAGCGGCTGAGATACCGCGAATGAATCGCGGTATGACGGTTCGTGGCGGCGTGACGATAAGCTCGTCATCCCGCTGCTTGTTAGCGG

>NC_021089|1|1|51304-51408|CRISPRCasFinder
CGTCATCCCGCTACTTGTTAGCGG	CTGAGATACCGCGAATGAATCGCGGTATGACGGTTCGTGGCGGCGTGACGATAAGCT
CGTCATCCCGCTGCTTGTTAGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_021089.1\|WP_015588779.1\|44725_45649_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015588778.1\|43380_44499_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|236757
NC_021089.1\|WP_006279880.1\|53095_53422_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133393
NC_021089.1\|WP_010082072.1\|57769_57934_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_021089.1\|WP_015588785.1\|56645_57251_+\|OmpA-like-protein	unknown	unknown	unknown
NC_021089.1\|WP_006279879.1\|53467_54064_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NC_021089.1\|WP_015588783.1\|51542_52730_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NC_021089.1\|WP_010082071.1\|57926_58088_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222853
NC_021089.1\|WP_012673044.1\|41414_43049_-\|ribonuclease-J	unknown	unknown	gnl\|CDD\|223668
NC_021089.1\|WP_015588781.1\|48930_49572_+\|dioxygenase	unknown	unknown	gnl\|CDD\|239542
NC_021089.1\|WP_015588777.1\|40146_41409_-\|Tol-Pal-system-protein-TolB	unknown	unknown	gnl\|CDD\|235351
NC_021089.1\|WP_006279881.1\|52790_53096_+\|integration-host-factor-subunit-alpha	unknown	unknown	gnl\|CDD\|259857
NC_021089.1\|WP_015588776.1\|39751_40105_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NC_021089.1\|WP_015588775.1\|38835_39762_+\|ribose-phosphate-diphosphokinase	unknown	unknown	gnl\|CDD\|234929
NC_021089.1\|WP_141456787.1\|58091_58526_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|379098
NC_021089.1\|WP_010962337.1\|49668_51171_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NC_021089.1\|WP_081600753.1\|58510_58813_-\|transposase	unknown	unknown	gnl\|CDD\|366690
NC_021089.1\|WP_015588774.1\|37665_38532_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NC_021089.1\|WP_015588784.1\|54076_56527_+\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NC_021089.1\|WP_015588780.1\|46335_47283_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773

Protein	Function_ID	Function_description	E-value
NC_021089.1\|WP_015588783.1\|51542_52730_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.49447e-15
NC_021089.1\|WP_015588778.1\|43380_44499_-\|molecular-chaperone-DnaJ	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	0
NC_021089.1\|WP_006279880.1\|53095_53422_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133393	cd04765, HTH_MlrA-like_sg2, Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	1.51321e-35
NC_021089.1\|WP_010082072.1\|57769_57934_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.26759e-09
NC_021089.1\|WP_006279879.1\|53467_54064_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	4.69003e-30
NC_021089.1\|WP_010082071.1\|57926_58088_-\|hypothetical-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	8.08186e-07
NC_021089.1\|WP_012673044.1\|41414_43049_-\|ribonuclease-J	gnl\|CDD\|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	2.43285e-172
NC_021089.1\|WP_015588781.1\|48930_49572_+\|dioxygenase	gnl\|CDD\|239542	cd03459, 3,4-PCD, Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.	1.30741e-50
NC_021089.1\|WP_015588777.1\|40146_41409_-\|Tol-Pal-system-protein-TolB	gnl\|CDD\|235351	PRK05137, tolB, Tol-Pal system protein TolB.	0
NC_021089.1\|WP_006279881.1\|52790_53096_+\|integration-host-factor-subunit-alpha	gnl\|CDD\|259857	cd13835, IHF_A, Alpha subunit of integration host factor (IHFA). This subfamily consists of the alpha subunit of integration host factor (IHF) and IHF-like domains. IHF is a nucleoid-associated protein (NAP) that binds and sharply bends many DNA targets in a sequence specific manner. It is a heterodimeric protein composed of two highly homologous subunits IHFA (IHF-alpha) and IHFB (IHF-beta). It is known to act as a transcription factor at many gene regulatory regions in E. coli. IHF is an essential cofactor in phage lambda site-specific recombination, having an architectural role during assembly of specialized nucleoprotein structures (snups). IHF is also involved in formation as well as maintenance of bacterial biofilms since it is found in complex with extracellular DNA (eDNA) within the extracellular polymeric substances (EPS) matrix of many biofilms.	1.31102e-34
NC_021089.1\|WP_015588776.1\|39751_40105_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	2.19765e-16
NC_021089.1\|WP_015588775.1\|38835_39762_+\|ribose-phosphate-diphosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	5.86359e-123
NC_021089.1\|WP_141456787.1\|58091_58526_-\|IS3-family-transposase	gnl\|CDD\|379098	pfam13276, HTH_21, HTH-like domain. This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.	2.94081e-14
NC_021089.1\|WP_010962337.1\|49668_51171_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NC_021089.1\|WP_081600753.1\|58510_58813_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	7.16945e-06
NC_021089.1\|WP_015588774.1\|37665_38532_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	2.34764e-24
NC_021089.1\|WP_015588784.1\|54076_56527_+\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NC_021089.1\|WP_015588780.1\|46335_47283_-\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	1.81482e-18

>NC_021089.1|WP_010962337.1|49668_51171_+|leucyl-aminopeptidase
MYSLQLFATEIPAMKITISKISPDFKTIVMGLFEDNETVNDGGVLQGKQVIDNIKQFSDFNGSFGEFFSTALPEEKNVIVVGLGKKDEWNENKELNIGGKIYCELSRLKIKKAAVLIEGSAANVAYGAFLRSFKFDKYKTKKDEKITEVEEITVLVKDEQLSNAERSFEHLRQEGESIFLARSFITEPPNILYPESYADHIKKELTKLGLEIEVLDKKQMEEKKMGALLGVAQGSSKEPKLVVIKWNGASKEQKPIAFVGKGITFDTGGVSLKPSRGMESMKYDMAGSATVVGVMHALAGRKAKVNAIGVVALAENAVGGNAQRPSDVVTSMSGQTIEVLNTDAEGRLILADALWYTQDRFSPKFMIDLATLTGAIVVALGNNEYAGLFSNNDELANRLIDAGNEVNEKLWRFPMNETYDKIIDSPIADVQNIAPAGSGGDSIMAAQFLQRFVNETCWAHLDIAGTAWHEKGTDICPRGAVGFGVRLLNKLVEKYYEAND
>NC_021089.1|WP_015588781.1|48930_49572_+|dioxygenase
MNVKNILLAFLVQMVFSLPLFAADPVLLNCIETPEIYDLDARPKNFNSSNNLRRKPGSPNSAIGELIHIVGRITDINCLPIQNAVVSIWHANSRGVNHYDKNIEDDLNFAGSGRFVVNNLGYYNFITIAPGKIGDRAPHINFLVQHPDFPEFTTQMFFADHNCDNCADPVLEDFVSNGLASLLITPFTYSDQVIKTYTFNITLGGYNKFSNKR
>NC_021089.1|WP_015588780.1|46335_47283_-|IS110-family-transposase
MVTSYQNFIGIDIGKFKNVVAIHKQKNAVEFDNNASGWQQLFQEFSDILPNALVTLENTGKYELGLSHFLTDKNIAVHRANTRKVKSFILSHGALAKSDRSDARALAQYGFERHRTISLFVPTSTEQSTLAALCQRRDDITQMRTQEKCRLEAPENDHIKESCQKTIEFFDSQINELNDTIQKIIDESRELQQRQKILKTVPGIGKKLSQDFLCLMPELGYLNRKEVASLAGVAPHPKESGKAVGYRRITGGRSNVRSKLFTAAMAATRSKSILGAFYSKLVESGKKKMVAITALMRKIIVIANTRLKEAINLHT
>NC_021089.1|WP_015588779.1|44725_45649_-|hypothetical-protein
MVASDSVLKRYALAYIKKLGNNNNIEGFLQYCNNTPNLTWSKENFKNVYEEFTHPNSSNRHDTGSRNDQYNAGNNAQPTGSQTTHIHVYNDRGLDFWDYLLLRSLFGGHTTVINNPGFSSGSHQSREDKKKDSEDNRKLLALGMVAAVVCVAFHAGMCFWYNSSRKVARKEEKIDYLDSKFKTFRNIEFAVGAVSLAALVACAVYPVLPVWGLVILGVNSLVCFTGGLAFHMKHEEESENIEKAERAVDSYLKQGHGYGDSSRYDAPPPYFSQDPNTTPTAPPQNAFDNPYLQQKFGNCKGFTRDKN
>NC_021089.1|WP_015588778.1|43380_44499_-|molecular-chaperone-DnaJ
MSKKDYYDLLEVGRNANIDEIKKAYKKLALKYHPDRNPGNKEAEEKFKEVTAAYEVLSDSEKRAGYDRYGHEGASGGFQGFSSAGDFSDIFNDFFGGGFGGGASRSRAKRSTTGVSGADLRYDLEITLEDAFKGIQAPIHYVTNVKCDTCQGTGGEGAIKPVQCHTCQGSGRIRTQQGFFTIERTCTTCYGEGEIIQNKCKKCGGSGRRRDEVNISVSIPKGIEEGAKVRISGKGEAGTKGGKSGDLYVYVKIIFHKIFARNKADLHCKVPIRMTLAVLGGEIDIQSIDGAKIKVKVPEGTQTGTKLRCREKGMPYMNSHARGDLYVQVIVETLNPKNLTKKQIELLKALEEEENASVQQQSEGFFSKVKKK
>NC_021089.1|WP_012673044.1|41414_43049_-|ribonuclease-J
MNINKNEFLFLPLGGVGRIGMNVSLYHYQGKWIMIDLGVGFADETMPGVELLIADIDFIAQRKKDLLGIIITHAHEDHCGAVPHLWEELQCSIYTTKFTVNFLKEKLKEFRLEGIVPVKEVDINGSINLGPFTVEFINVTHSIPEANSILISTEMGSALHTGDWKFDPKPVVGLTSNMERLKEIGDKGDLLAAICDSTNILSKHHPESEGEIYNNIYNIIKRSKKLVAVSLFASNVARIETISQAAKALNRKVVLLGRSLWRIVKVAQDSGYLTDSPQFLEAKEAVNFPREELVLLCTGCQGEPLAATARLAAKSHQAFKMQQGDTMIFSSKIIPGNETRAHNMLNAFIEMGVEVITEKTEHVHASGHPTREELKEMYSLIKPKMSIPVHGEYIHTHAHVKFAKECGVAKAIMIAPGDIVNLENGEKVDSIDVDYFGIDGMLLRHPESSVIKMRKRMRDAGVIVVTAVVNKKNKLLAKPKVFVPGVFEVLEDAATIQKIVKKVESLFSLQPTKKIKNKIESSILSILKEYLLKRPIIEVQIEQV
>NC_021089.1|WP_015588777.1|40146_41409_-|Tol-Pal-system-protein-TolB
MKLFVHLVLFISLFIPYFTKAALYVDIKKSSVGNIGLVVSKCTCKTALESELSENIAKVIGTNLSNCGLFNVKRGAEAESKSWKSDTVVTVSLSEISGSALELSFRLFDTFTKRELLTQSVVFPAKDWRKIGHLVSDVIHDRLIGEKGHFNTKITYIAEEKDSNYKSVRKIAVMNQDGSNIKYLTNGDRFVSTPRFSPNGKGIVYISYANGKSYIILKNLKDNTESIISAFEGVVSAPRFSPDGKSLLISHSLGGETNILSLDLSSKRTKKITKGSAISTSPSFSPDQKYMAFSSDISGSQQLYVIDFTNKSKKPKRISFGSGRYATPVWSPKGDLIAFTKIQSGKFYIGVMKPDGKEERLLSEGHKIESPAWLPNGREIIFTRTESPSNSKLYLVDLVKKNQKMVSTPTNASLPDWSYF
>NC_021089.1|WP_015588776.1|39751_40105_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MPAKSTEDVITSLIEFANKRKITITKEEMLKIAQLVRIKLSNDEIDHYSKELTMLDWIHDTLLQVNTEGVSPMRYGSIDKDIHVRDDVINSQNIKKEILSNTKPEHGYFVVPKVISD
>NC_021089.1|WP_015588775.1|38835_39762_+|ribose-phosphate-diphosphokinase
MKIIIGNASKELGESVVNRLDVQPSSAWISKFTDGEVNVEVANDLYNQEVYIVQSLSPPVNDNLMELLLIIDAVNRLGAKRIVVIIPYYGYSRQDRIIKNNNMQSALSAKLVANLIQTAGASSVAVIDLHSSQIEGFFDVPVTNLNCFEAFVDSINTENLAIVAPDVGAIGRARAFARALEEKYKIGLSDKIIVVDKYREKAGTSQVMNIIGEVANKNCVIVDDIVDSGGTLCNAALALKSYGAKSVTSCITHGVLSGSAVEKISSSSLDKLVITDTILHKLEKTGKIEVVSVVNILTHFIQGGRNAS
>NC_021089.1|WP_015588774.1|37665_38532_+|ankyrin-repeat-domain-containing-protein
MTEETKDGYASLYVAIQEGNIEAAELLIKCGTNVNDHYERNRTPLHIAIGRKQLEIAKLLIKNGANVNAKTQNHGKDDLTPMHFAVFANTPEFIELLASHGALINERESTEGYTPLHFAALYGNKNIIQALIDKGQDIEDVDNNGRTALFLAARQCTEAEDDSRIEIIKYLIDKLKADVTKKDNNNNAVLFPAANNCPGKVVEFIIEQYIKIFELENFINHKNNDGMDALDIALNSGNEKAIEVLRSYGADIKNKVDGSIQKITAEKPSSTLDRAEGAEVAPPIKQRV
>NC_021089.1|WP_015588783.1|51542_52730_+|MFS-transporter
MESRAKAWFIWLISNLVVIFSNMQIIYTFISVNLEKELRLTIAQVALANSAYTWTFAILQFFSGATFNVFSSKKIYFFSLSTMILGFFVLINSDNFSHLILSQVLIATGASFGFIGAAHTSSICFSAAQFGLMFSLVQTISSLSALVIQILFSNLLAEDAYWKNLIVCIILFGVLIFVLTLFCPNTLPESSSEKRTIKSSMKTVMCSILTVLKLRDIWITSVVGAITFGTFLALNTLWAPRLLGNSELNAMESGIATAILWLGLAVGAPIADRISNLFKNRKHVISAFALLQGVSIIILLYSHLTVHVVYFCMLMFGFFAGGHMLNFTVGSEIVKRKYISTSSSIINGFMFIGSGVIVSMLALFTDHKMALFAIFAILIVAGILNYATKETYSKK
>NC_021089.1|WP_006279881.1|52790_53096_+|integration-host-factor-subunit-alpha
MDHVTTKDTTVTKATIAGDINQEIGLSKEDSVSIIDDILDEIKTSLVKDGIVKISSFGTFLVKKKKERPGNIPNTSEKVMIQARNSVSFRPSKIIKKSINN
>NC_021089.1|WP_006279880.1|53095_53422_+|MerR-family-transcriptional-regulator
MNKEKLFYTIGEVAEELHLEQHVLRFWEGQFHQIKPTKRKGRRLYDRKCIEAIKKVKYMLYDKGYTIKGVQKEFGNDIKVTKNLLQELTDLRDYLTSKINNEESNKQA
>NC_021089.1|WP_006279879.1|53467_54064_+|M23-family-metallopeptidase
MWHIASFLMLLAILIGCGLQKPAPVLLKGEEFYGKRDLEYTREYHLIREPSVQKESRKAIINRIYKDNNNTQNVGVNCKFVMPVKGSATSSDEMCKDGIKIAAQNGTNVVSSAPGKVIYVGKGLRWYGNLIIVEHKDNYMTVYSYLKNIHVEIGDKVKQGQVIGSAGKSSTQDKDPQMCFTIRHNGQAVDPLMHMNCN
>NC_021089.1|WP_015588784.1|54076_56527_+|leucine--tRNA-ligase
MKYDFKSVEKFYQDKWDFSVSKSGKQEKCYVLEMFPYPSGKIHMGHLRNYAIGDVIARYKRANGFEVLHPIGWDAFGLPAENAARDNNISPETWTKENIDNMRTQLKSIGLSYNWERELSTCEPDYYKHEQKFFLDFLKHGLAYRKESWVNWDPVDQTVLANEQVVDGKGWRSGAVVEKRKLSQWFLKITDFAEDLLKCLQSLKNWPEKVKTMQERWIGKSEGVTIDFEIVGLNKKLKIFTTSPHTWFGASFFAVAAEHPIVQDLKDKEIRDFIDGMKAKEENDEKIGVYTGLNVKHPFLDKELPLYIANFVLMEYGEGAIFGCPAHDQRDFEFAQKYDLPVIPVICEKGAQAIVTLEEAYTGGEIMCNSEFLNGLTVSEAKEVIIKKLKEKGIGEKTTNYRLHDWGISRQRYWGCPIPIIYCRDCGTVPVPEKDLPVVLPTDVEFTSGGNPLDKHPTWKFVDCPKCGKQAERETDTFDTFFESSWYFAAFCSEDKSIDKDACNRFMPVDYYIGGIEHAILHLLYSRFFCRALTKCGYFDIKEPFSTLITQGMVCHATYKDENGKWLFPAEAKELIAQGAKVQVGKVEKMSKSKKNTVDPNFIIEKYGADTARLFVLSDTPPEKDMEWSDDGVEGCSRYVNKLWRMVMQLKPVNMHYDSKSVTGGLLEYRKKIHKLLHGLTDDLENCRLNCVVAKFREMTNLIAEIDVAAGKSLINEGICILIRVIEPFMPHLAESLWQEIGGQPWPKADESLLVDDTVTIAVQINGKLRATIEVAINLPQEELKKIAIDSVSSKIDQNKVRTVYAVPNKIVNIVI
>NC_021089.1|WP_015588785.1|56645_57251_+|OmpA-like-protein
MKMKRLCALAVLLTSSLAGTANNSASKSEDQYYAGLNFGAGWGGGLKIKPSVVFGYHHDKNSKFELEVLTDISDMFGKEEKKMGASLLANYRYYPNLDIDPVKLYVSGGLGGYLQVIPFGFGNSGTSEPASKDIEAAGEKASVVDKILGSISYKLKVGVDYEIAPQIVGTVGITAGGQLSGFKPPVQIPDAILEVGIRYNF
>NC_021089.1|WP_010082072.1|57769_57934_-|IS3-family-transposase
MSNKGCCYDNSVAESFFSSLKREILIDTSQHSAQQTRTAIFEYIEIFYNKQRHY
>NC_021089.1|WP_010082071.1|57926_58088_-|hypothetical-protein
MSSAINKQLVMNSLLMAINRRKPVKNLLLHSDQGSQYTAQGYQYLLAVKNIDE
>NC_021089.1|WP_141456787.1|58091_58526_-|IS3-family-transposase
MFFYIVTAIKYRNYVGFSASGYYKWTTRKISSRESANKELLEAIQKIYQVSKCRYGAPKIYAELKALGKSCNLKTVQSIMQKNDIRAILRRKFKIKKQQTDNRAVAPNILDQNFIVDQPNKVWDYLHQNQGGMAIFGSNNSHVW
>NC_021089.1|WP_081600753.1|58510_58813_-|transposase
MVREYTAEFKLEAVKLANEQRKAGQTITKIARDLGIKGGLLGKWIKKHNEKKSAADAFPGRGNMAPYDKERFDLQSKSNKGKRHLKKSPGQSKRVKYFFI

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Crispr_ID: NC_021089_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021089_2

114426-114697

Orphan

Consensus_repeat	Method
TCACGGTATCTCTAGATCCCGCTAACACGTAGCGGGATGACGA	PILER-CR
CGGTATCTCTAGATCCCGCTAACACGTAGCGGGATGACGA	CRT

3 spacers

The CRISPR arrays of NC_021089_2

>merge|NC_021089|2|114426-114697|PILER-CR,CRT
TCACGGTATCTCCAGATCCCGCTAACAAGTAGCGGGATGACGAGCTTATCGTCACGCCACCGCGAACCGTCATACCGTCACGGTATCTCTAGATCCCGCTAACACGTAGCGGGATGACGAATTACTTAACCATCATCTACACCCTCATACCGCGATTCATTCGCGGTATCTCTAGATCCCGCTAACACGTAGGGGAATGACGAGGTCATGCCGCCGCAAACCGTCATACCGCCGCGGTATCTCTTAGCCGCTAACACGTAGCGGGATGACGG

>NC_021089|2|1|114426-114628|PILER-CR
TCACGGTATCTCCAGATCCCGCTAACAAGTAGCGGGATGACGA	GCTTATCGTCACGCCACCGCGAACCGTCATACCG
TCACGGTATCTCTAGATCCCGCTAACACGTAGCGGGATGACGA	ATTACTTAACCATCATCTACACCCTCATACCGCGATTCAT
TCGCGGTATCTCTAGATCCCGCTAACACGTAGGGGAATGACGA

>NC_021089|2|1|114429-114697|CRT
CGGTATCTCCAGATCCCGCTAACAAGTAGCGGGATGACGA	GCTTATCGTCACGCCACCGCGAACCGTCATACCGTCA
CGGTATCTCTAGATCCCGCTAACACGTAGCGGGATGACGA	ATTACTTAACCATCATCTACACCCTCATACCGCGATTCATTCG
CGGTATCTCTAGATCCCGCTAACACGTAGGGGAATGACGA	GGTCATGCCGCCGCAAACCGTCATACCGC
CGCGGTATCTCTTAGCCGCTAACACGTAGCGGGATGACGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_021089.1\|WP_015588825.1\|115260_116553_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|184642
NC_021089.1\|WP_041573495.1\|108578_109355_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_041573496.1\|111811_111994_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015588821.1\|109420_109810_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368785
NC_021089.1\|WP_141456787.1\|107418_107853_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|379098
NC_021089.1\|WP_015588829.1\|122229_122505_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NC_021089.1\|WP_015588830.1\|122955_125070_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|224588
NC_021089.1\|WP_012673066.1\|119652_120249_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455
NC_021089.1\|WP_006279515.1\|122676_122955_+\|YggT-family-protein	unknown	unknown	gnl\|CDD\|376765
NC_021089.1\|WP_010082072.1\|108010_108175_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_021089.1\|WP_010082071.1\|107856_108018_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222853
NC_021089.1\|WP_015588826.1\|116553_117597_-\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
NC_021089.1\|WP_015588823.1\|110486_111035_-\|phage-head-tail-connector-protein	unknown	unknown	gnl\|CDD\|153446
NC_021089.1\|WP_015588824.1\|111171_111483_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015588827.1\|117743_119471_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_006279415.1\|122017_122239_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015588828.1\|120306_120897_+\|CvpA-family-protein	unknown	unknown	gnl\|CDD\|367140
NC_021089.1\|WP_081600757.1\|111987_114186_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NC_021089.1\|WP_015588822.1\|109784_110195_-\|DUF3168-domain-containing-protein	unknown	unknown	gnl\|CDD\|378648
NC_021089.1\|WP_006279412.1\|121374_121812_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226335

Protein	Function_ID	Function_description	E-value
NC_021089.1\|WP_015588825.1\|115260_116553_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|184642	PRK14353, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	2.26442e-173
NC_021089.1\|WP_015588821.1\|109420_109810_-\|hypothetical-protein	gnl\|CDD\|368785	pfam06199, Phage_tail_2, Phage tail tube protein. characterized members are major tail tube proteins from various phages, including lactococcal temperate bacteriophage TP901-1.	0.000578182
NC_021089.1\|WP_015588826.1\|116553_117597_-\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
NC_021089.1\|WP_015588829.1\|122229_122505_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	3.22731e-15
NC_021089.1\|WP_015588830.1\|122955_125070_+\|DNA-translocase-FtsK	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	4.90666e-172
NC_021089.1\|WP_012673066.1\|119652_120249_+\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	2.5695e-91
NC_021089.1\|WP_006279515.1\|122676_122955_+\|YggT-family-protein	gnl\|CDD\|376765	pfam02325, YGGT, YGGT family. This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown.	7.91468e-08
NC_021089.1\|WP_010082072.1\|108010_108175_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.26759e-09
NC_021089.1\|WP_010082071.1\|107856_108018_+\|hypothetical-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	8.08186e-07
NC_021089.1\|WP_141456787.1\|107418_107853_+\|IS3-family-transposase	gnl\|CDD\|379098	pfam13276, HTH_21, HTH-like domain. This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.	2.94081e-14
NC_021089.1\|WP_015588823.1\|110486_111035_-\|phage-head-tail-connector-protein	gnl\|CDD\|153446	cd08054, gp6, Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins. The bacteriophage HK97 gp6 protein is critical in the assembly of the connector, a specialized structure that serves as an interface for head and tail attachment, as well as a point at which DNA exits the head during infection by the bacteriophage. It forms a dodecameric ring structure that comprises the middle ring of the connector, located between the portal protein (attached to the head) and the gp7 ring (attached to the tail). It is a component of the mature phage and the absence of HK97 gp6 results in defective head-tail joining and the absence of mature phage particles. Although the crystal structure of HK97 gp6 shows an unexpected 13-mer ring, the biological form present in the mature phage is believed to be a dodecamer.	4.99798e-11
NC_021089.1\|WP_015588828.1\|120306_120897_+\|CvpA-family-protein	gnl\|CDD\|367140	pfam02674, Colicin_V, Colicin V production protein. Colicin V production protein is required in E. Coli for colicin V production from plasmid pColV-K30. This protein is coded for in the purF operon.	1.96511e-19
NC_021089.1\|WP_081600757.1\|111987_114186_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	1.05215e-29
NC_021089.1\|WP_015588822.1\|109784_110195_-\|DUF3168-domain-containing-protein	gnl\|CDD\|378648	pfam11367, DUF3168, Protein of unknown function (DUF3168). This family of proteins has no known function but is likely to be a component of bacteriophage.	0.00147997
NC_021089.1\|WP_006279412.1\|121374_121812_+\|hypothetical-protein	gnl\|CDD\|226335	COG3814, COG3814, Uncharacterized protein conserved in bacteria [Function unknown].	1.86948e-25

>NC_021089.1|WP_081600757.1|111987_114186_-|ankyrin-repeat-domain-containing-protein
MEKKKFFEIINEVSKSEGLNENNLLERIGSELKDADSIVYSTYNNLKIDKMFSILDSDKIVNYMLVHLAVECNSVPIVKLLLAKEAKVNEPIYELDEAKSKLTALHIAALHGHQEIAQLLLNNNANPSLKDSQGRTPRDIVGDVKGKKAIIKMLEEGEQRYAETRATRRQPYRQGTLPQPNNKTPGDSAMGGNKITAAVQAWNARDQKENNGITPNSRKIYVQDEDEQTSSNSITNENNINKVDDTLERELAKRDAVAQKLQEAEQRLANNQKRIEHNDLHSQHPEQYTTYNGEQTFLNKSSSDDSGICFDGDGSEALGQSILENGEDIDAQDKDGVTPSHWAVADNNKELAKLLIKHGADVDARNRDKHTPLHYAAVHGYVEIAKYLIDNGANVNAQDQDEHIPLYFPVTNDNKELAKLLIKYGADRSLIKDEDLIDRLNSMCDQPSEVVPSTFSHSKTHNATETPEKAEKVEKRKAKLKELRTQLKDEQKKNELLKQKIQDLESKNTTLNSELEKTKTKTDEVPLEKAQKELTELKSYITGHGARLDTLEKLNEENESLRQEIKNLKNENTTLKGELEKTKTKKNEVPLEKAQKELTELRNCVTEHETKLEVLEKLNEENESLEQKIQDLESKNTILNSELEENENKHSKTKVLLEKAQKELAESKSCIVGHETKLKQFNKENESLTQKIKSLENENTPLEGELGKTKTNEVSLEKNFPQKLPTRALQLC
>NC_021089.1|WP_041573496.1|111811_111994_-|hypothetical-protein
MLAVGAALSIASGLSVLLIVAASVVSALIAGGITYTISKPIAPDTELKEVNIQGSAQRCL
>NC_021089.1|WP_015588824.1|111171_111483_-|hypothetical-protein
MKTFTKNFKNNEKKLEEFNKEIEDITTIAQDKFAHELENIAYDSVQKFRSLLAKELNSTFNNIHSQNVNLLKSSLVEYAISSNFINKKGETALIRSLLNIFIR
>NC_021089.1|WP_015588823.1|110486_111035_-|phage-head-tail-connector-protein
MSIRSTSPRISVQRKSKPESFPVTLEEVKSFLRIENNQDDKLISDLIFMATDYAEWHMEKSLVKQTWQVSYEDYVPRRIYLSYGPVSKIVLATAMMSKNQEKRTLKYYFSDVGGYVEFFNCLNAIRVDVVYEAGYDNVPEQIKLGIMRHVSALYKNRESEVSSHLSEVKKVYSPFREPKVVL
>NC_021089.1|WP_015588822.1|109784_110195_-|DUF3168-domain-containing-protein
MEKIQAINELYNSIYAALKANSDLRKYVTNIYDYLPKQVTIPYLRLRAVNYSNLHMLSNFATKARFSCDIYTYHIDSMFAIIRHINLILKSIEGFSSEVILESNCAMDQHDEILHSTINFDILIKGGDNEQITAKN
>NC_021089.1|WP_015588821.1|109420_109810_-|hypothetical-protein
MSKLQLKIKDHDNNFIVLNNIQNLRFTLRNNREEVKDISSFGWRKVLDSAGSRHITIKINGILDSVLADELLRNSAMLNSNNDYEISFKAKEKIRLRCSVELYERYYDPAAFDSFTVILASAEVVNAFH
>NC_021089.1|WP_041573495.1|108578_109355_-|hypothetical-protein
MNDKDLFEEDGDNIEENNDDKRERSLENENQQNQEEQHKEEDKQYIIQYTQDYLKVFEDILNQIDEGIDNLDSYERTMQIKRSIDRLIETLYSQAASEDIDTEFETTKHTRDKSESMKRVREKRRKQAIEEVLSSMFAQQQKELMNAKHLSHGHETAHDDEAKKRVKSSIRGVLFSVIAHRMDPRRRAGETADDNEKQAHIHGREAVGGALGALLKTFLTAVAAIVHEIAKPLQKQETSFAKQVEESRNADSQKGRSV
>NC_021089.1|WP_010082072.1|108010_108175_+|IS3-family-transposase
MSNKGCCYDNSVAESFFSSLKREILIDTSQHSAQQTRTAIFEYIEIFYNKQRHY
>NC_021089.1|WP_010082071.1|107856_108018_+|hypothetical-protein
MSSAINKQLVMNSLLMAINRRKPVKNLLLHSDQGSQYTAQGYQYLLAVKNIDE
>NC_021089.1|WP_141456787.1|107418_107853_+|IS3-family-transposase
MFFYIVTAIKYRNYVGFSASGYYKWTTRKISSRESANKELLEAIQKIYQVSKCRYGAPKIYAELKALGKSCNLKTVQSIMQKNDIRAILRRKFKIKKQQTDNRAVAPNILDQNFIVDQPNKVWDYLHQNQGGMAIFGSNNSHVW
>NC_021089.1|WP_015588825.1|115260_116553_-|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MISKTHTFVILAAGHGRRMNSDLPKVLHKIGSFSMLQHVIYNAKQLNPENIAVVVDQPLIERLKCFKDIQLITQELTLGTGDAVKTAMRNLRELPDSSIVVVQYGDTPLIKSSTITKMISYLEGKALVCLGFRTSNKEYGRLIIENGSLREIVEAKSDKNNHEEFLANAGIMVACAKNLRELVEKIECNSSTHEYYLTDIVSIAVKSNLNVGYVITGGEEATGINNRNDLIKAEFYFQENKRKVFTDSGVTLVAPETVFFSLDTQIARDSVIYPYVFFGTGVKIESGAKILPFSHLENCLIKSNAEVGPFTRIRGNTTIGNKAKIGNFVEVKTSEVGQNTRIKHLSYIGNAKVGQESNIGAGTIVCNYDGKNKHETNIGSNCFVGANSSLIAPLNIHDESVIAAGSVIVEDVPEKSLAIAREKQVTKRIK
>NC_021089.1|WP_015588826.1|116553_117597_-|phenylalanine--tRNA-ligase-subunit-alpha
MNKELLDDILSLEDKAVSEIENASSLQDLEKVRLLYLGKKGVVRAYFDNLKKIENAEKKRDLGAVINALRDKIDHLIMNRENVLKTEEVNFKLQNEAVDITLPVRPEKMGKVHPLSKVINEVKLIFAHMGFKAVDGPDIEDEFHVFDALNTPSHHPAREEQDTFYLKNKIDDKRMVLRTHTSSVQIRTMEKTKKFPIKIVAAGRVYRNDFDATHTPMFHQIEGLYVDENVNMGQLKFTIHHFLNKFFGDKGLKIRFRNSFFPFTEPSAEVDISYKGSKWIEVLGCGMTHPNVFQNVGIDHTKYNGFAFGIGIERLAMLKYQISDLRSFYDNKISWLDHYGFHFSSLR
>NC_021089.1|WP_015588827.1|117743_119471_+|hypothetical-protein
MHNSNTETKNKYKIEDLPKLFKEKSRNISKAFSSETIKISAIRSRSIESNIQKFSFELTATDKDTFNIRLFRINPLIDFFKICLSREKKFTANIKVPKESSELYNNYCKTNSYKTVEEFVNSAPPQILLQGTTITLQTDVENINLDNLYQIELFLNEKLQHAEKTENEDKKEQSETNQKNAQNKQIVPVTGSFGFDVTNNGKQVTRVSIVVAAMHENVFWFRSFFCLPNFFNTSQFFSQQLPKFSIQSNNIPFGVIPAFDQEKRNMDPSSQATRMTGGSIENPIPQEAEQNVGQTTSHTEYFKANRKKSKKQSQELPEEEKQSTIKQARNDARVAVIDNQIEHRGKKLDKIFIEVMSGYKNQDPETFCNIFSSVFNIVYFQDKQLHAILEPGEISEVLQILERPQPLSNSLLGKEYLQKQVYRKKEQLLKLVSGVYIQQPSPQHENTPHKSTNPLPIKDLSPATNEAKTLPPTNITLKSPLKTVFSSKKAYFCLFIIVASASTLCLWHFPLGKVSMLKGLVPPEKRESIGLALNIGLPILIALCILNLARFIYSEYSIESIKQVSENDPLSRAYS
>NC_021089.1|WP_012673066.1|119652_120249_+|riboflavin-synthase
MFKGIITDIGTITDTTTHSNSDQIFHIKTQNLSSINKGDSIACSGVCLTVVDIMSDTFTVQASQETMKVANLNTWRIGKKINLEQAMRLSDKIDGHLVQGHVDGIVKFLTINQNLDSHEIKLSCPQELIKFVAKKSSVTLDGVSLTVNSVVNQEFTVNITPYTWENTTFQYNKVNDYLNLEIDMIARYLDQLMQHKYN
>NC_021089.1|WP_015588828.1|120306_120897_+|CvpA-family-protein
MLFDSLIIFIVVLCVIISVTRGFIKELCALMFLFLSVFLTANHYDFFTPNYSKYFDSKVTLNILSTISVFIILNLIFMIINNWLMYILLPIRLGFIDRVTGIFLGVLKGILLSYVLFFAVHLYCYTVYDKKEGEYKIEAEDILPNWIINSHSYQALFVTAEEVIDMYVPESLILKIKEIGGEMVDQEKPKNNKKEE
>NC_021089.1|WP_006279412.1|121374_121812_+|hypothetical-protein
MEQTDYKKLLNSAKFQVIKKTLDVISGNGFIPHLEILFFTYFNGVTMPDRLKKSYPTQMLIILQHQFYDLKVSEDKFSVSLSFQGKQERITIPFFAISEFRDKISGDVLIFDKISIDSDKEYKSEKCTEKLSNGSIISIDQLRDE
>NC_021089.1|WP_006279415.1|122017_122239_+|hypothetical-protein
MANSGINIALSEETLKHLAELSEFTKQPVQELAGKLFREAVELEMEDFLVSKISDERDVEGAETVDFEDIKWD
>NC_021089.1|WP_015588829.1|122229_122505_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MGLERYKVKSLKSVVEKDLPNLPKTIRLRVQKAIKERLTVDPINFGEPLHHNLKGCRRLRVGDYRVIYRVNQLDHIVTITEIGHRDDIYKK
>NC_021089.1|WP_006279515.1|122676_122955_+|YggT-family-protein
MHPIIYLLNTLLDLYSFILICWVVLNWLVKLNMVNIYNETVSSIMHILNQLTYPPLKIIRRYIPPFNGLDLSIMILLITIHFVKYTVAYYFR
>NC_021089.1|WP_015588830.1|122955_125070_+|DNA-translocase-FtsK
MLKKYLKSAIYLSLLIYIYISVFSYNYKDPSLNTATNEEVTNLGGIVSSYLADILVQFLGLTSVTIATTIVYLLIFRPSKRLLKILYLILINLGICAILPQLSLGITARYRHSGIIGNALINNCPFYIFVIVTSIGLVGSVGWKRTIYSLFFLCKKIACLFVNVPFFRSHKTTEYSIAPLVVEEKHRTKITTKQQPKARQKKATEEVLSEFKFPSIHLLSKAEESLQRKQLNEMESNKNLSLLEQVLSDFGVQGKIISVCYGPVVTLYKLEPQAGTKSARVIGLADDIARSMSALSARISIIRGQNAMGIELPNKEREIVMLRDLLESPEYQNANLNLPIALGKEISGKPVIADLTKMPHLLVAGTTGSGKSVAINTMILSLVYRLSPDECKMIMIDPKMLELSIYDAIPHLITPVVTEPKKAVVALKWIVKEMENRYRMMSYLNVRNVINYNQRITEAMNSGIELERVVQIGFNSTTGKPLFEKLPIKMETFPYIVVIVDEMADLMLVAGKEIECSIQRLAQMARAAGIHIIMATQRPSVDVITGVIKANFPTRISFAVTSKIDSRTILGEQGAEQLLGMGDMLYMASGGKIIRIHGPFVSDDEVQDIVDHLKMQGEPNYMEEITKEDENSSVESEGETEDEENDLYNQAVAIIQRDQKVSTSYIQRQLRIGYNRAANIVERMEKEGVVSAPNYSGKREILVE

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Crispr_ID: NC_021089_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021089_3

358734-358817

Orphan

Consensus_repeat	Method
ACGTCATACCGCCGCGGTATCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021089_3

>merge|NC_021089|3|358734-358817|CRISPRCasFinder
ACGTCATACCGCCGCGGTATCTCTTAGCCGCTAACAAGCAGCGGGATGACGAATTGCTTAACCGTCATACCGCCACGAACCGTC

>NC_021089|3|2|358734-358817|CRISPRCasFinder
ACGTCATACCGCCGCGGTATCTC	TTAGCCGCTAACAAGCAGCGGGATGACGAATTGCTTAA
CCGTCATACCGCCACGAACCGTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_021089.1\|WP_015588956.1\|355710_356649_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NC_021089.1\|WP_015588953.1\|353203_354145_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_174517030.1\|359341_359959_+\|transposase	unknown	unknown	gnl\|CDD\|376573
NC_021089.1\|WP_015588962.1\|366694_367693_-\|pyruvate-dehydrogenase-complex-E1-component-subunit-beta	unknown	unknown	gnl\|CDD\|169719
NC_021089.1\|WP_015588958.1\|360960_362364_+\|malonyl-CoA-decarboxylase	unknown	unknown	gnl\|CDD\|368376
NC_021089.1\|WP_015588960.1\|364856_365612_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_041573576.1\|356656_357502_+\|SPFH-domain-containing-protein	unknown	unknown	gnl\|CDD\|259800
NC_021089.1\|WP_141456678.1\|359010_359340_+\|transposase	unknown	unknown	gnl\|CDD\|290455
NC_021089.1\|WP_015588959.1\|362443_364240_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NC_021089.1\|WP_006280002.1\|357669_357945_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226580
NC_021089.1\|WP_015588963.1\|368240_369341_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|179699
NC_021089.1\|WP_015588961.1\|366338_366719_+\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NC_021089.1\|WP_015588949.1\|349816_350041_-\|BolA/IbaG-family-iron-sulfur-metabolism-protein	unknown	unknown	gnl\|CDD\|223349
NC_021089.1\|WP_015588952.1\|352549_353092_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
NC_021089.1\|WP_015588955.1\|354973_355714_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|234640
NC_021089.1\|WP_010962623.1\|357925_358618_+\|thiamine-diphosphokinase	unknown	unknown	gnl\|CDD\|273588
NC_021089.1\|WP_015588951.1\|351092_352415_-\|NADP-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|235976
NC_021089.1\|WP_144054588.1\|370413_371688_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NC_021089.1\|WP_015588966.1\|372152_372563_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NC_021089.1\|WP_015588954.1\|354205_354913_+\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|274513

Protein	Function_ID	Function_description	E-value
NC_021089.1\|WP_015588956.1\|355710_356649_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.56975e-47
NC_021089.1\|WP_174517030.1\|359341_359959_+\|transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	2.31818e-12
NC_021089.1\|WP_015588962.1\|366694_367693_-\|pyruvate-dehydrogenase-complex-E1-component-subunit-beta	gnl\|CDD\|169719	PRK09212, PRK09212, pyruvate dehydrogenase subunit beta; Validated.	0
NC_021089.1\|WP_015588958.1\|360960_362364_+\|malonyl-CoA-decarboxylase	gnl\|CDD\|368376	pfam05292, MCD, Malonyl-CoA decarboxylase C-terminal domain. This family consists of several eukaryotic malonyl-CoA decarboxylase (MLYCD) proteins. Malonyl-CoA, in addition to being an intermediate in the de novo synthesis of fatty acids, is an inhibitor of carnitine palmitoyltransferase I, the enzyme that regulates the transfer of long-chain fatty acyl-CoA into mitochondria, where they are oxidized. After exercise, malonyl-CoA decarboxylase participates with acetyl-CoA carboxylase in regulating the concentration of malonyl-CoA in liver and adipose tissue, as well as in muscle. Malonyl-CoA decarboxylase is regulated by AMP-activated protein kinase (AMPK).	2.7243e-142
NC_021089.1\|WP_041573576.1\|356656_357502_+\|SPFH-domain-containing-protein	gnl\|CDD\|259800	cd03402, SPFH_like_u2, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes an uncharacterized family of proteins similar to stomatin, prohibitin, flotillin, HflK/C (SPFH) and podocin. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Many superfamily members are associated with lipid rafts. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease, and in cancer invasion and metastasis. Mutations in the podocin gene give rise to autosomal recessive steroid resistant nephritic syndrome.	5.54128e-125
NC_021089.1\|WP_141456678.1\|359010_359340_+\|transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	3.64684e-11
NC_021089.1\|WP_015588959.1\|362443_364240_+\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NC_021089.1\|WP_006280002.1\|357669_357945_+\|hypothetical-protein	gnl\|CDD\|226580	COG4095, COG4095, Uncharacterized conserved protein [Function unknown].	0.0052091
NC_021089.1\|WP_015588963.1\|368240_369341_-\|AAA-family-ATPase	gnl\|CDD\|179699	PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional.	1.26575e-71
NC_021089.1\|WP_015588961.1\|366338_366719_+\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	1.04063e-08
NC_021089.1\|WP_015588949.1\|349816_350041_-\|BolA/IbaG-family-iron-sulfur-metabolism-protein	gnl\|CDD\|223349	COG0271, BolA, Stress-induced morphogen (activity unknown) [Signal transduction mechanisms].	2.89975e-12
NC_021089.1\|WP_015588952.1\|352549_353092_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	3.8688e-39
NC_021089.1\|WP_015588955.1\|354973_355714_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|234640	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator.	6.06591e-131
NC_021089.1\|WP_010962623.1\|357925_358618_+\|thiamine-diphosphokinase	gnl\|CDD\|273588	TIGR01378, Thiamine_pyrophosphokinase, thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	1.63329e-60
NC_021089.1\|WP_015588951.1\|351092_352415_-\|NADP-dependent-malic-enzyme	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
NC_021089.1\|WP_144054588.1\|370413_371688_+\|MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.0856e-69
NC_021089.1\|WP_015588966.1\|372152_372563_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	6.07413e-52
NC_021089.1\|WP_015588954.1\|354205_354913_+\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	1.98329e-59

>NC_021089.1|WP_010962623.1|357925_358618_+|thiamine-diphosphokinase
MQNLHHDHVLHCSTQQQYRSIVVLNGKIPSSSFFKRDIPIIAVDGGANKLLSIGVKPDLVVGDLDSVNLDLRANLNTIYLPDQDYCDFSKAMAHLKTVKLLPSIVTGITGGAIDHILQNINIFLSTGSIFYTPSPPMVGYTLQKGITHFFSLPKNTKISLLGIPRAQISTKGLKWELHLSNLAFPGKNSCFNRSLGNKVSVEVHSGICLAMIYLETVDDAARHHVRQVKK
>NC_021089.1|WP_006280002.1|357669_357945_+|hypothetical-protein
MYINIEECFGFIALIASLIGLSPQVYKAYITKVTRDVSMLMLVNYLICSLSWIGYGLYQSSIFVVLSNIAGLVISIISIIQKCYYDAKPAP
>NC_021089.1|WP_041573576.1|356656_357502_+|SPFH-domain-containing-protein
MDKNTINDRNLSQLRFFPVLIALGLILSLLFLAYDSTIALGVAAVSILTFLQGFFINDPNEARVIEFFGHYIGTDFKSGICVTLPFSSKYIVSLKFQNINTEKIKVNDANGSPIEISAVIVWRVNSPAKAYYNVNNYHEFVFVQSDSVIRELASNYPYDSESDEESLRKNSDKISDELRSMLQQRLDIAGIEITEARISHLAYSSEIAQAMLRRQQAHAITSARRHIVQNAIGIVEEVIAHFEKNKSLQLDGKQKVQLINNLLVALISEQDAQPKISLDNN
>NC_021089.1|WP_015588956.1|355710_356649_+|M23-family-metallopeptidase
MRLVIFVLLCILPAYATETSTDLAQPFQHGIRKKKATLTTESDRKLLFISSTIKSSFFATEGLAPNTVVKLINIYKDFGVDFKKDIVPESKLEVLFERLPNNQKTEEKILYASLTINKKAISLYHYKSQDGKERYFNKEGISLKNGEIFANPLNGDYRISSKFGNRKHPVRGKIAFHKGVDYAAKLGTPIYAAAEGVIEYIGKNGGYGNYIKIKHKNEYSTCYAHISRFSGDIKLGSKVKQGQVIAYVGSTGVATGPHLHYEVIYNGKHIDPLTIAHKTEVKLPDHELREFKLFVNKINKTINREGSSEKEV
>NC_021089.1|WP_015588955.1|354973_355714_+|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MAGHSQFSNIKHRKGAQDAKRSQKFTKLIREITVAAKQGLPDHELNPRLRSAIFAARKENLPKDKIETAIKNATGNVAGENYEEIQYEGHGPSGTALIVHALTNNRNRTASEVRYIFSRKGGNLGETGSVSYLFDHVGLIVYKAEGVNFDDLFSHGIELEVLNIEENDKEGLHVITCEIKDFGKVRDAFYAKFGEPELARLSWQPKDLIEISDKELIDKLSALVEELEDNDDVQYVEGNFTFVDKL
>NC_021089.1|WP_015588954.1|354205_354913_+|outer-membrane-protein-assembly-factor-BamD
MYKTLITCFIFLICSFTQSYADDLEKTETELYEEAVELFDQKKYKQAIRAFHKIEDLYPLSYWAMKAKLLSGVSHYNMGNYSSAASDMADYIYVYSNGEDLPYVYYLRVLSYYMQINKVQLGQQTAYKTLELATEYINLFPGSEYVDEIKEKTKLITEHISTKEYSIGKFYLRRGEYLAAIKRFQNMASYKDSKYFSKSINYLIAVHSAIGLDLEAEQYESMLLAENLQDAKPEA
>NC_021089.1|WP_015588953.1|353203_354145_+|hypothetical-protein
MKIPSGKFSSTKKVPGKNKKKRDFEPLEEFFWDFWPTVDKEVKRERLEQELLALKKRELYRQCVSLVTMVPFALFMAIELEKICSDQVLLGVISGALSHTILPFTVLSLICTLYLIYNNRKIAQKERELEIIENGEEVKEKEHNISDIGQCLIYIEAITTALVIVGMIMGETSSLEAAEDAILFLANAIAFLATLVSYIDKHEKNKKKETEKSDLDEKSSKKTSNISVAGLALAGSSIFLIRRIMLMALASSLNPAVGPTLGLIGIAIFMAVQILTIHSYSKTLKDPKVEGRGESRNAGSSDRSYKEEGPAIA
>NC_021089.1|WP_015588952.1|352549_353092_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MLKKNVPNLLTISRALAVPAIILSFYIENKYAGLITISIFVFACITDFFDGYLARAWKVQSKFGKLFDPIADKLIVVSTIIMLVYKQKINDFTIVPSIIIICREILVSGLREFLIATNVSLPVSKAGKIKTFLQMVAVVALIMNDYYMIQYTGAICLWVAAIITMWSGYNYILAGIKQIG
>NC_021089.1|WP_015588951.1|351092_352415_-|NADP-dependent-malic-enzyme
MNDDLDSTTKQEALNYHSRGGKPGKISIMPTKPLSTQYDLSLAYSPGVAAPCLEIAKNPEVIYDYTAKSNCVAVISNGTAVLGLGNIGPLAAKPVMEGKAVLFKRFADIDAVDIEVGTENIEDFINAVRYLGPSWGGINLEDIRSPDCFIIEKRLNELMDIPVFHDDQHGTAVVVAAGIENALDIVEKKLEDVKIIMNGAGAAGIACLEILKSMGAKNIVLCDKQGVIYKGRNEDMNEWKEKYAIDTSERSLLDTIKGADVFIGLSAKDVLNEEMLKSMGKDPIIFALANPDPEVRPEFAKSVRPDAIIATGRSDYNNQVNNVMGFPYIFRGALDVHATTINDEMKIAAADAIAKLAREPVPGEISAVYGGRKMGYGREYIIPTPFDPRLISIVAPAVAKAAVDSGVARKAIQDWSKYENQLKSRLSNVLSTLNLLSSHM
>NC_021089.1|WP_015588949.1|349816_350041_-|BolA/IbaG-family-iron-sulfur-metabolism-protein
MTIAIHELERIIKQSFPDADIKIHDLAGDDDHYHLKINSKCFLGKTKIEQHKMVYKALEGQSIHALQLETNTLK
>NC_021089.1|WP_141456678.1|359010_359340_+|transposase
MPQKMRVSNCHEYNKFLQERGSIFCYINDAIENWYENCPKMQGGNYIYSDKVVILVHIIVSFFRIGLRQTVGFIKGYLQQIGRDLAVISYSQASRRFKKLNIKINDCRK
>NC_021089.1|WP_174517030.1|359341_359959_+|transposase
MEDIEIAIDSTGISIYNNTPGHSKENSTDRKYRGYEQTRKLHVMLNINNKKAIAVKYSNGVYSDHYGACDLLKEVDFQHAIKALYADRACDRHKFYKLCNEYDIKTKIPPINNAAEHPEIDYMSDRNAAIRLIKLYGEDGMKEWKKEVNYGKRSYIEGFFSRLKQIFGFSFRNKSEINREKELLIKCYLLNKFTDIGMAKFEIVT
>NC_021089.1|WP_015588958.1|360960_362364_+|malonyl-CoA-decarboxylase
MTKESLVKTDIVKVEDKKAVRSFFKILGGVADAVRSWIGNISPDLSNSRDIDSLVLKMNECLNPKGGEVSARKNAVSLGNLYLSLSEKGKIKFLQTLAEKFNPNKAEIDEKIREYKKNQDPELNYKFEQDLIKILESPRSKILKQFISLPEGLKFIVDMRSDVLKLKNQYRSLNPLESELKNILYTWVDVDLLDLRQITWDSPASLLEKLIKYEAVHKISSWGDLKNRLDSDRLCFAFFHYKIPNEPLIFVEVALVDKIADSIQHLLDESVPSNDPSNASTAIFYSISNTQAGLSGISLGNFLIKRVVEKLSQEFKSIKTYATLSPIPGFTKWLKNNLNQDVTLLGKLNIKQSSAEILESAEQLKTNVECTNETKQYMLKLCAYYLLKVNNSNGNTYDPVAHFHLSNGASIKQLNWMADTSEKGISQSAGMMVNYLYELPKIDNNHENYMVNKVISCSKKVSSMLKE
>NC_021089.1|WP_015588959.1|362443_364240_+|elongation-factor-4
MNNIRNFAIIAHIDHGKSTLADRLIEECNGLEAREMTNQILDSMDIERERGITIKAQTVKLNYTANDGNQYCLNLMDTPGHVDFSYEVSRSLAACEGSLLVVDSSQGVEAQTLANVYKAIDNNHEIIVVLNKVDLPAADPEKVKLQVEEVIGIDASESVLISAKTGLGIKDVLEAIVAKLPAPQGDVNAPLQAILVDSWYDTYLGVVILVRVKNGVLKKGMKIVMMSNNATYQIDNIGIFTPKKVMTGELSAGEVGFITASMKEVADCKVGDTITEEKRPCSKALPGFKEVHPVVFCSIFPHKTDDFKYLREALEKLHLNDASFTFEAETSNALGYGFRCGFLGMLHLEVIQERLEREFDLDLTATAPSVIYRVTTRSGEVLNIHNPSDMPDPTKIEIVEEPWITATIMVPDQYLGEILSLCEERRGEQEDLSYIGNTTTALLRYKLPLSEVVFDFYDRLKSISKGYASLDWEISSYLVSQIDKLSFLINGEPVDALACIVHKSRAEKRGREICARLKDLIPRQQYKIAIQAAVGGKIIARETINPYRKDVTAKLYGGDVTRRMKLLEKQKKGKKRLHSIGNVNIPQNAFIQALKISD
>NC_021089.1|WP_015588960.1|364856_365612_+|hypothetical-protein
MVCDNCSVIKFSGKMIMDIAYLAALISAAIIKIAAVILCAIMCISVFFILFKGIKEHLDSKGFLSLLKTVGVISIILSIISLPLIILSLTTPSPLVVGIVGGIVGAISIIPLIVAYILLSITSKGLSQQPENYQHLFLTSLLLFIGNIIAGAFIAVSGVFPICKVDSLSSLSAALESLPAVGIHALALTIATAIGVVIVIDLAKQAKEYISGKIMQAEKESVTDTHKEPDSKVDEAKEGNVKNERKVPLLP
>NC_021089.1|WP_015588961.1|366338_366719_+|TrbC/VirB2-family-protein
MNPTIKRIFNIFLIVLFISFSHVGSAAADTNTDTTAQVICNIIGYVWGIGGPLMTVVIIGAALLAIFGRMPWPALFALGIFCAVFFGAKTIVIKVMGGIGGTGNTSLMDQCGTGDTKKNYFFLKQT
>NC_021089.1|WP_015588962.1|366694_367693_-|pyruvate-dehydrogenase-complex-E1-component-subunit-beta
MATLSVREALCTAIREEMQNDSDVLIMGEEVAEYDGAYKVTKGLLKEFGENRVVDTPITEHGFAGLAVGAAFAGLKPIVEFMTFNFSMQAIDQIVNSAAKTNYMSGGQLGCPIVFRGPNGAAARVAAQHSQCFAAWYSHIPGLKVIAPYFASDCRGLLKAAIRDPNPVIFLENEIAYGHEHEVSDSELSNKDYLLEIGKAAVIREGKDVTITAFSLKLMDALNAADLLSSEGIEAEVIDLRTLRPLDTQTVINSIQKTNRLVSVEEGWPFAGIGAELSAVIMEQGFDYLDAPVVRVTGKDIPLPYAANLEKKALPQVEDIVEAVHQVCFRKK
>NC_021089.1|WP_015588963.1|368240_369341_-|AAA-family-ATPase
MKKIEISELLKRISICLLCVATIVSIAFLFAYMHTMLLSKGYELAAHYVSEAMPCVLLVVPLFIVWFVYDQVFSKLKEVELPISIELANSDDKRITFADAIIDDSLKQRLQMICCDQMTEEMRKLFGNKSINSLRGYILYGPPGNGKTLIARAIAGESNMNFISISGPELIGVYIGHGAHAVRELFKIAKKYSPCIVFIDEIDAVAQKRSTANNSAYHCRESLTQLLTEIDGFKSRKDIIVIGATNLIGGIDPALIRPGRLGQKVYVPNPNIEVRQKILALYMRGTKTDEKLSLQDIADKTEGYSGAELEQLVNEAKISAGAQRRLIVSEEDFSYALHRLSPEQERDRIKLVSNAKTQIEETSFIR
>NC_021089.1|WP_144054588.1|370413_371688_+|MFS-transporter
MNLVQTRVLISTILCRIAIWYDYMLFIDLINIISREFCFAKDVYSNILQLFGIVGLGAIVRPLGAFIFGHVGDRYGRRIALIITILLISIPSSLIAFIPSHNQVGIISTILLLAIHITQGIALGGEQGSSVYLIEHLSSRKENLGMYFGMMGFGRSIGVLLSAVIVIICKKTTDFCTLGWRLPFIFSAILGLISAYSIYTLGETPAYEKNRKQRNLPDLPIIELIKRHKRALILAILISVPVNVAVGFTIFLRTLAKEIASVDVYVTTYINEIVLIITSVLMPISSIAFGMLADKVGKERTAILFIAITMALCCPALSIAYYYKNYLVIALSVMVLSIIERGIVPIGIVASELFPTNVRFSGVSLSRNISYALHGGFTPMVCIWLTVTFPQTNLAAGLYIVFCLLISVVAILQIKLQDKKFDWS
>NC_021089.1|WP_015588966.1|372152_372563_-|nucleoside-deaminase
MELAIEQAKLAQKNDEVPIGAVIVSGDNIISSAHNISSDPTAHAEMLAIRQAFSTPTLCDADMYVTLEPCPMCAQAISFARIKRLYFGAYNPKGGGIENGAKIFQFCSHIPEVYGGILETECSFLLKDFFEKLRNI

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Crispr_ID: NC_021089_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021089_4

515298-515408

Orphan

Consensus_repeat	Method
GAGATACCGCGGCGGTATGACGGTTCGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021089_4

>merge|NC_021089|4|515298-515408|CRISPRCasFinder
GAGATACCGCGGCGGTATGACGGTTCGCGGTGGTATGACGGTTAAGTAATTCGTCATCCCGCTGCTTGTTAGCGGGATCTAGAGATACCGCGGCGGTATGACGGTTCGCGG

>NC_021089|4|3|515298-515408|CRISPRCasFinder
GAGATACCGCGGCGGTATGACGGTTCGCGG	TGGTATGACGGTTAAGTAATTCGTCATCCCGCTGCTTGTTAGCGGGATCTA
GAGATACCGCGGCGGTATGACGGTTCGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_021089.1\|WP_015589053.1\|510832_511693_-\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
NC_021089.1\|WP_080717616.1\|509350_509437_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131744
NC_021089.1\|WP_015589049.1\|507926_508553_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NC_021089.1\|WP_015589052.1\|510078_510822_-\|UMP-kinase	unknown	unknown	gnl\|CDD\|234735
NC_021089.1\|WP_015589054.1\|511673_512522_-\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
NC_021089.1\|WP_006279326.1\|507718_507910_+\|zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|370944
NC_021089.1\|WP_015589057.1\|515489_516422_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NC_021089.1\|WP_015589056.1\|513371_515183_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NC_021089.1\|WP_015589058.1\|516824_517712_-\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|237553
NC_021089.1\|WP_015589064.1\|527429_528071_-\|fructose-6-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234947
NC_021089.1\|WP_015589063.1\|526163_527093_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NC_021089.1\|WP_015589055.1\|512919_513291_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235518
NC_021089.1\|WP_015589059.1\|517702_518581_-\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NC_021089.1\|WP_070356842.1\|516536_516728_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_041573518.1\|528817_529102_+\|transposase	unknown	unknown	gnl\|CDD\|225511
NC_021089.1\|WP_015589051.1\|509513_510071_-\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NC_021089.1\|WP_179943641.1\|523553_526160_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NC_021089.1\|WP_041573517.1\|528110_528452_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589060.1\|519702_520875_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571
NC_021089.1\|WP_015589050.1\|508542_509238_-\|di-trans,poly-cis-decaprenylcistransferase	unknown	unknown	gnl\|CDD\|376506

Protein	Function_ID	Function_description	E-value
NC_021089.1\|WP_015589053.1\|510832_511693_-\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	6.69269e-117
NC_021089.1\|WP_080717616.1\|509350_509437_+\|hypothetical-protein	gnl\|CDD\|131744	TIGR02697, hypothetical_protein_WD_0725, Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode. [Mobile and extrachromosomal element functions, Other].	0.000122762
NC_021089.1\|WP_015589049.1\|507926_508553_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	6.20677e-39
NC_021089.1\|WP_015589052.1\|510078_510822_-\|UMP-kinase	gnl\|CDD\|234735	PRK00358, pyrH, uridylate kinase; Provisional.	3.58114e-134
NC_021089.1\|WP_015589054.1\|511673_512522_-\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	5.87445e-140
NC_021089.1\|WP_006279326.1\|507718_507910_+\|zinc-finger-domain-containing-protein	gnl\|CDD\|370944	pfam10276, zf-CHCC, Zinc-finger domain. This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C.	2.05346e-07
NC_021089.1\|WP_015589057.1\|515489_516422_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	3.74699e-48
NC_021089.1\|WP_015589056.1\|513371_515183_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NC_021089.1\|WP_015589058.1\|516824_517712_-\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|237553	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase.	6.66215e-142
NC_021089.1\|WP_015589064.1\|527429_528071_-\|fructose-6-phosphate-aldolase	gnl\|CDD\|234947	PRK01362, PRK01362, fructose-6-phosphate aldolase.	2.16083e-129
NC_021089.1\|WP_015589063.1\|526163_527093_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	6.51618e-37
NC_021089.1\|WP_015589055.1\|512919_513291_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235518	PRK05585, yajC, preprotein translocase subunit YajC; Validated.	6.03719e-34
NC_021089.1\|WP_015589059.1\|517702_518581_-\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	4.13499e-147
NC_021089.1\|WP_041573518.1\|528817_529102_+\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.97628e-07
NC_021089.1\|WP_015589051.1\|509513_510071_-\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	1.45314e-85
NC_021089.1\|WP_179943641.1\|523553_526160_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NC_021089.1\|WP_015589060.1\|519702_520875_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
NC_021089.1\|WP_015589050.1\|508542_509238_-\|di-trans,poly-cis-decaprenylcistransferase	gnl\|CDD\|376506	pfam01255, Prenyltransf, Putative undecaprenyl diphosphate synthase. Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.	9.16361e-112

>NC_021089.1|WP_015589056.1|513371_515183_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIFGVVSSGDSVIPTLLTGLQKLEYRGYDSSGIAIINNEGKIEVKKSEGKVERLCEVVDDSKMSHSTVGIAHTRWATHGVPGLKNAHPIRTNNVVVAHNGIIENYNLLKKGLEERGMPFHTDTDTEIIPNMLTLYLDEGLSPVDSLFKCLNNLHGSFALVLLFTEYPDALFVAKRNLPLAIGYNCNTVFAASDSNALSAFVEKISHLEDDDIAVIKSSGVSIYNNGTQVKRSIENSSPSDFLISKNGYPSFMLKEIFEQPCALNKTINQFYKQYKEVNKKLFSELNHITIVGCGSSYFAGLIAKYWLENVAQVRVYLEISSEFRYSNVKLEEGSIGLFISQSGETADTIEALRYAKSQKQTIISITNTFSSSIEKISDIVLHTLAGPEIGVASTKTFSAQLATLACFAVELGKIKGILGGERIKQLSSAINSIPEYVEHVLNVMKIQHISGSILEHNNVILIGRGSSYGVAMEGALKIKELSYINTTGIAAGEMKHGSIALIDSTVLVIAIIPYDDLFFKTLSNIQEIIARKGKVIAFSDKQGAPFLRGVCADVVQLPDTDNFISPIIYSVAMQFLAYFTAAKKGLDADCPRNLAKSVTVE
>NC_021089.1|WP_015589055.1|512919_513291_+|preprotein-translocase-subunit-YajC
MLISEVFAADATSNTSSIGASFASFTPLILIFVVFYFLIIRPQQKKLKEHRKMIDQIKRGDTVITSGGIIGEVNKVDEANAQFIIEIAPKVEIKVLKSAISEVLSKETQKVAAKPIKKVKSKE
>NC_021089.1|WP_015589054.1|511673_512522_-|30S-ribosomal-protein-S2
MTNLPKVTVRDLAESGVHFGHKISRWNAKMAPYIYGVHQENRIHIIDLRKTLPLLQVAMKALYDVAFQGGRILFVGTKFQAFDIIASEAIRCGQYYVNHRWLGGMLTNWGTVSSSIKTLMQYEKILNDEDSILTKKELGNIEKKKQKLDKALGGIREMGAIPDILFIIDTNKEHIAVKEAKKLGIPIVAILDTNSDPDGITYLIPGNDDSRKSIELYCKLATDSILAGIESSLAKSGVKIDDIRGDEFIQEKEDGIVQTKKRRSKVYKEEEREVVTNEDESR
>NC_021089.1|WP_015589053.1|510832_511693_-|elongation-factor-Ts
MKMNPDDIRELRDRTGLGLSDCKKALEECDGDIKKAVDKLRTIGLAKADKKSDRVASDGLVVMCLTENYGALVELNCETDFVARNEKFIELVSNLASIAHQERCTSVDELKNAKYESIGTVQEAIMNGTSVLGEKLELSKLCYLEAKDGVIAGYVHGDVCGLGKIGALIALQSSGDKAKLQEIGKQIAMHVVAMKPEALSIDDLDQMKLKNERSIIEEQVRGLNKPEEVAKKIVDGRMAKYYEEVVLLEQKFIKDDKMKVSDFIKSSEVSAIKLSNYKLLVLGGAN
>NC_021089.1|WP_015589052.1|510078_510822_-|UMP-kinase
MFPSTNEKSEIKYSRVLFKISGEALMGSQSFGYDMGIISQLCKDIADINRLGVQVCIVVGGGNIFRGTSASLSGCERASSDYIGMLATIINALILQNFLEKNLIASRVLSAIPMATVCEPYIRRKAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAVEMNCDVILKGTQVNGVYSADPKKNEDAVMYDRLSYTDLLTRDLKVMDASAISLARENSIPIIVFSLKGEKIVNIIKGQGTYTIVSDCKH
>NC_021089.1|WP_015589051.1|509513_510071_-|ribosome-recycling-factor
MLNEIKAKTKERMLKTIQSFHDDIKGVRTGRASASLLDGIVVNIYGGHQKLNQVAGVSVIDNKTLSIKIWDINVVGEVKNAILNANLNLNPVVEGNTIRIALPDLTQETREKLVKLLHQFAENARIAIRNIRRDIMEEIEKMKENKEISEDDFHGAKKEIQNITDNNIKKIDGELSIKEKDILNH
>NC_021089.1|WP_080717616.1|509350_509437_+|hypothetical-protein
MILECKIGVIPVLRHWDPGNLISNKCIR
>NC_021089.1|WP_015589050.1|508542_509238_-|di-trans,poly-cis-decaprenylcistransferase
MLNQESLPKHLAIIMDGNGRWANNQGKVKIDGYKKGSEVAYDIAKYCTDLTIPYLTLYAFSMENWLRPKNETDCLFDLFYSVLTNEDKVNFICNCNIKLNFIGNLSLLSSKILDQIKKAEEMTHKNDGLLLTVAVSYGAKQEITQAISNIIKENIAYVSEEEFEKFLYTKDLPKLDLLIRTGGEKRLSNFLLWQAAYAELYFCDTLWPDFSCQDLSKALEDYTKREKKYGR
>NC_021089.1|WP_015589049.1|507926_508553_-|phosphatidate-cytidylyltransferase
MVDNNFIIRMLSSIVILFIFSFATYFSDLSFYLLIFSIAVLSSFEWYNLTQGNKILYVFALLLIALPSASLIYLYNLPQGKYALVWFVLTIWGIDVTAYLFGKNFGGAKICPILSPGKTWTGLLGAILAGVVCTIFGSIFFGLFSIFYSPIIGLAIAILAQLGDFTESLVKRAYGVKDSGNMIPGHGGVLDRMDSFIFTAPLIAIYIS
>NC_021089.1|WP_006279326.1|507718_507910_+|zinc-finger-domain-containing-protein
MSKVRVNNRKVCCHGDENDEGSGHPLIYLDMGEEEEIACPYCEKTFVHDCTVEAVGELTRDEL
>NC_021089.1|WP_015589057.1|515489_516422_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MALSKFLDPKLDLTFKKIFGTEKNKNILIHFLNDILGFTEINTIQEVEFLSTIMDPEIASDKQSIVDVLCRDSSGARYVIEMQLTRDKGFEKRAQLYAAKAYSRQADKSGKYIDLKKVFFIAISNCNLFPDKLDYISSHTIRDEKTNEHDLKDFQFVFIELPKFPKNKEEQLESIVDRWLFFFKYADETTEEDLRKIAEKAPIIKLAYDELDRFSWNEKDLVAYEERIMDLRKEEAILEYRLDLATEKGIQIGEERGIKIGKEEGKIEGKIEGKIEVAKAMLANNVDVNTIVKFTGLSISEIEELSVNGY
>NC_021089.1|WP_070356842.1|516536_516728_-|hypothetical-protein
MVNLVELCKNLERKIAKLYQFSLLVNQISDIVELFNCGVRKKGNSMAFFPLLSIRLLCSGNWY
>NC_021089.1|WP_015589058.1|516824_517712_-|UDP-N-acetylmuramate-dehydrogenase
MLISLPKVRGIYRYDVLMSKATWLNVGGRADVLFKPCDIEDLTYLIKNTELPVSVIGATSNIIVRDSGIRGITVKLGKEFTYIKSKGNNSIVAGGAVLLSNLAHFAGNQQISGLEFLVGIPGTVGGGIEMNAGAYGSDIASVVQSIKAVNLEDGNLYEFSSEEMGYFYRGHSLKGNWIFVEAEFKGINSEYELILQRLKEVIERKNKSQPIRGKTAGCIFKNPKNYRAWELIDKSGCLGLNIGGARISKKHCNFLLNYDNATASDLENLGNKVKDAVKDKFNVELEWEIRVLGSY
>NC_021089.1|WP_015589059.1|517702_518581_-|hydroxymethylbilane-synthase
MPVKIGTRGSKLAVAQALEAKQKLLDSFPNLSIEIVKIKTSGDKYANANLAEIGGKGLFIKEIETELLENNIDMAVHSLKDMPAFFSGGLTIPCVLERLSSCDAFISHKHNSLESLPQQATIATSSIRRKVQLLNVRPDLNIVPLRGNVTTRLQNQSFDGIILAEAGLIRLEKHHLITEVLPPKVMLSAVGQGAVCIQCRRNDVKIINLLEKINNNMSFIGVKSERSFMKTVNGSCFTPLAALAEYVSENMLHLRCMLASGKNIYFTERTSFIEDAEKMGMDAGLELKSKCL
>NC_021089.1|WP_015589060.1|519702_520875_+|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase
MSKIIEIRAPKTLGGESVTEGIVKIKKGIGEAVKVDDLIFEIETDKTALELTAEASGQITEFLVKEDDVISPDQLLAKLSVGEVKEEARKEDKSESAAKKDAPSARKIMEENAISAESVKGTGMGGRITKADVIGHMNKAEQPAIKQYELPKSVVSGEQREERVKMSKIRQVIAARLKASQNTAAILTTFNEIDMKNVMDLRAKYKDAFEKKYGIKLGFMSFFIKAAVQALKEIAEINAEISGDEIIYKHYYDVGVAVGTDKGLVVPVIRGADQMSFAEIELTLVALGKKAREGKLQVSEMEGATFTISNGGVYGSLLSTPIINPPQSGILGMHSIQNRPVAMGNSIEIRPMMYIALSYDHRIVDGKGAVTFLVKIKNYIEDPNRLVLEV
>NC_021089.1|WP_179943641.1|523553_526160_+|preprotein-translocase-subunit-SecA
MSFFFIRKIFGSTNKKIIKSFRKIVQQINALETEMQSLSDEELAGKTEEFNRELKNGKTLNDLLVPAFAVVREASRRFLNMRHFDVQLIGGMVLHNGMISEMKTGEGKTLVATLAAYLNSLEGKGVHVVTVNDYLAKRDTEWMSKLYNSLGVSVAFITNNLTDEERKEAYSADIVYSTNNELAFDYLRDNMKFSQEDMVQRGFHYGIVDEVDSILIDEARTPLIISGPVEENNQIYKHINKIVTKLVDSDYEVDEKGRTVFLTEDGISRVEELLRSCNLIPENSSLYDTDSMIMTHYIDQALRAHKLFTADKDYIVKDGKVVIIDEFTGRMMEGRRYSDGLHQALEAKENLEIQHENQTLASVTFQNYFRMYNKLSGMTGTAATEAEEFSDIYRLNVVKIPTNVSVKRVDIDDEIYGTGKEKFNAVLKFIEECHKRLQPVLVGTVSIENSEKLSALLQSHSLKHSVLNARYHEQEAYIIAQAGVPGSVTIATNMAGRGTDIQLGGNAEMIAKVELKKIKNADEREKKYQEIVERVKKDKEIAIKAGGLCVVGTERHESRRIDDQLRGRSGRQGDPGLSKFFLSLEDDLMRIFGSDRMRSFLQKVGLKNNEAIHHPWINKALEKAQKKVEARNYDVRKSLLKFDDVINNQRKVIFKQRNNILGNEINDLLEVYSEVNESVIEGIVQSGYYEDYIEDIVKEFHTRYGITLDKEDLAKFLNKQEVLDYINDKIQEFFTEKEKYFNSQHTTDLWNTIVKQMMIMTLDHLWREHLSVLESLRQSISLRAMGQKDPLNEFKREAFLMFESMLEKWKELTIHRLAHFKLADNQEIGNRLHSARNSRLPKVSRNDKCPCNSGKKYKHCHGAVTVVN
>NC_021089.1|WP_015589063.1|526163_527093_-|ankyrin-repeat-domain-containing-protein
MTLRLIVQEVNSSPDLSKENLIDRIKDKLQQENQLIYDEWKKNEFDINYTFIVLKCNLLLIAAENGYEKVVRYLTKNGANVNVQDEWEKTSLHYSAQHGHAQVVEVLLEEGADVNAQNEDKGTPLHYAAYSGHIEVVKHLIKKEADVNVVDRYGRSPLHYAAENGYTQVVEVLLEEGADVNAQDKDGRTPLYYAVYYTHGEHPRLNYQHPKVAKLLLNYGADPSFIHRPKAITAGITVGILAAIVAPLALIYATALPALAIVVITVASALIVGGISYGVAYKSSEHSLNSKLSEVSCSNVDGNKQTVQP
>NC_021089.1|WP_015589064.1|527429_528071_-|fructose-6-phosphate-aldolase
MEIFLDSVDLNEIKGLKEFIDGITTNPSLIAKSGRKDKYEDLVREICSIIKGPVSVEVVADSHEEMITEGLNLAKIADNVVIKLPLTHEGLISCKKLWTEHKIPVNITLCFSPGQALLAAKVGACFISPFVGRLDDISYDGLSLIEDICTIYSNYGFDTKVLVASVRSPAHVIEAARFGADSITVPAKVLRQLINHPLTDQGLAIFEKDWGVK
>NC_021089.1|WP_041573517.1|528110_528452_-|hypothetical-protein
MNLITNSIKGFYSSVKSDLDWQAKRSLIRTLVKEVNIDLDKVDVVFKIKELENPAQNGQNQKMVHCLRGLGTGMTSFFLVQITLMSQYLYSCVIGCLMFTTQEVHTVVSQAVG
>NC_021089.1|WP_041573518.1|528817_529102_+|transposase
MVREYTAEFKLEAVKLANEQRKVGQPVAKVARDLGIRDSVLGKWMKKYNEKKSAANAFPDVAPYDKERFDLQKELAKVTRERDILKKALASQKE

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Crispr_ID: NC_021089_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021089_5

593031-593101

Orphan

Consensus_repeat	Method
GCTTGACACTGGAATCTGCGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021089_5

>merge|NC_021089|5|593031-593101|CRISPRCasFinder
GCTTGACACTGGAATCTGCGTTTTCCCTTGGTTTGGTGTCATTCCAGTGCTTGACACTGGAATCTGTGTTT

>NC_021089|5|4|593031-593101|CRISPRCasFinder
GCTTGACACTGGAATCTGCGTTT	TCCCTTGGTTTGGTGTCATTCCAGT
GCTTGACACTGGAATCTGTGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_021089.1\|WP_010082521.1\|594003_594444_+\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NC_021089.1\|WP_015589089.1\|582321_582678_-\|Mth938-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238152
NC_021089.1\|WP_041573589.1\|591280_592153_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589100.1\|602332_602647_-\|septum-formation-initiator-family-protein	unknown	unknown	gnl\|CDD\|368217
NC_021089.1\|WP_065094818.1\|587945_588125_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589098.1\|594455_595631_-\|multifunctional-ribose-5-phosphate-isomerase-B/3-demethylubiquinone-9-3-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	unknown	unknown	gnl\|CDD\|235350
NC_021089.1\|WP_010082072.1\|600993_601158_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_021089.1\|WP_081600778.1\|601691_602045_-\|transposase	unknown	unknown	gnl\|CDD\|366690
NC_021089.1\|WP_015589090.1\|582681_583548_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|184766
NC_021089.1\|WP_179943640.1\|590703_590964_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589099.1\|596531_598280_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NC_021089.1\|WP_015589093.1\|588318_588915_-\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NC_021089.1\|WP_015589094.1\|589136_590588_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|181676
NC_021089.1\|WP_015589092.1\|587296_587971_-\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NC_021089.1\|WP_141457347.1\|587144_587240_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131744
NC_021089.1\|WP_080717604.1\|595865_595922_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131744
NC_021089.1\|WP_015589091.1\|583629_586890_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|274298
NC_021089.1\|WP_006280480.1\|598517_599600_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NC_021089.1\|WP_010082071.1\|601150_601312_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222853
NC_021089.1\|WP_144054591.1\|601315_601738_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|379098

Protein	Function_ID	Function_description	E-value
NC_021089.1\|WP_010082521.1\|594003_594444_+\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	8.24181e-14
NC_021089.1\|WP_015589089.1\|582321_582678_-\|Mth938-like-domain-containing-protein	gnl\|CDD\|238152	cd00248, Mth938-like, Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.	5.56194e-37
NC_021089.1\|WP_141457347.1\|587144_587240_+\|hypothetical-protein	gnl\|CDD\|131744	TIGR02697, hypothetical_protein_WD_0725, Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode. [Mobile and extrachromosomal element functions, Other].	0.000696439
NC_021089.1\|WP_015589100.1\|602332_602647_-\|septum-formation-initiator-family-protein	gnl\|CDD\|368217	pfam04977, DivIC, Septum formation initiator. DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil.	0.000194866
NC_021089.1\|WP_015589098.1\|594455_595631_-\|multifunctional-ribose-5-phosphate-isomerase-B/3-demethylubiquinone-9-3-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	6.90629e-135
NC_021089.1\|WP_010082072.1\|600993_601158_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.26759e-09
NC_021089.1\|WP_081600778.1\|601691_602045_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	1.49028e-05
NC_021089.1\|WP_015589093.1\|588318_588915_-\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	2.55749e-15
NC_021089.1\|WP_015589099.1\|596531_598280_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	1.2015e-163
NC_021089.1\|WP_015589092.1\|587296_587971_-\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	6.06532e-68
NC_021089.1\|WP_015589090.1\|582681_583548_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|184766	PRK14610, PRK14610, 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase.	1.97396e-177
NC_021089.1\|WP_080717604.1\|595865_595922_+\|hypothetical-protein	gnl\|CDD\|131744	TIGR02697, hypothetical_protein_WD_0725, Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode. [Mobile and extrachromosomal element functions, Other].	0.0020206
NC_021089.1\|WP_015589091.1\|583629_586890_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|274298	TIGR02784, ATP-dependent_nuclease_subunit_A, double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_021089.1\|WP_015589094.1\|589136_590588_+\|replicative-DNA-helicase	gnl\|CDD\|181676	PRK09165, PRK09165, replicative DNA helicase; Provisional.	0
NC_021089.1\|WP_006280480.1\|598517_599600_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.01971e-30
NC_021089.1\|WP_010082071.1\|601150_601312_-\|hypothetical-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	8.08186e-07
NC_021089.1\|WP_144054591.1\|601315_601738_-\|IS3-family-transposase	gnl\|CDD\|379098	pfam13276, HTH_21, HTH-like domain. This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.	6.02765e-14

>NC_021089.1|WP_041573589.1|591280_592153_+|hypothetical-protein
MPSAEFAKDIKTASEKAFTSTKEAFISGRVTRIVKDGLKDVYGTSFEPVKSALNSFGSSLKNTCDTSIESAKGTISSVGNKLKNVYDTMPSTKIEFSWVSEKFSPYWNSVKNLMFGNKADQASGASQLSSESQGNGIVIPEGAKLELSPILFDFLFREKQKMVRQFLREQTDEKKNVATQENLKTETPSQENQMNIDNVPKQPDHLNVDAAKSYLMSLSEDQDVFYDAESGDEKGTEISSPESQPTKEENGQGWFAWSLGKVKSAMTEVVVIGADVTKPYCAKVTKALAT
>NC_021089.1|WP_179943640.1|590703_590964_+|hypothetical-protein
MMNKNNVPYYIAGTLAALTLLASGVFAAAPYIGFLAPVAALSVGLPFIIGGAVFSAVAIALSYAAVSKNKTISEKEAQLSDEKSRS
>NC_021089.1|WP_015589094.1|589136_590588_+|replicative-DNA-helicase
MNELANLLSSRSVDKEICKLPHNLEAEQMLIGAMIRDNRICDAVEDTITAENFYDPLHQSIFTQISKTRKHGIVANELSLKMFFENDQAFTECGGVEYLAKLAAKASIALDIYSLTRIIRDTYLRRCLIKLGQEIVGDSYNYDIENPAQAQIEQAMTKLFNLAVKKQGEKTYIKLASSIKDVVEKISTLKNNPEALGVTTGLQDLNQLLGGLQKSDLLILAARPSMGKTALALNIALNACKMLQKRADKQHYVAFFSLEMSAEQLTARLITIDSGISYYKALTGRISDFELHEFINTSTELSELPFIIDDTPALSISALRTRIRLLYQLYNVEVVFIDYLQLIRGTTKRSNENRVQEISEVTQGLKAIAKELNIPIVALSQLSRSVEQRDDKKPQLSDLRDSGSIEQDADIVMFLYREEYYELRKQPNEGNNKHREWQEKMEKIRNIAELIIAKQRNGPIGSVKLYFDSNRGAFKDYTERHSS
>NC_021089.1|WP_015589093.1|588318_588915_-|RDD-family-protein
MLHKFFNRLFSIFSSINVIQKVKKDENGICYVTGLRRYISVLLDLIIIVLFLQFCSQALNQLFMNSEDSKILSQIAAKSPMQAPLSAEEKTTQSRLIKLLILNQIVQFIMLFCYVIYMWVKFATTPGKLLFGLRVVDAQTFEKMTLKQATKRFFSFILSVAPLFLGFLWSNFNKRCQTWHDKIAGTVVVTSKSLRRQS
>NC_021089.1|WP_065094818.1|587945_588125_-|hypothetical-protein
MTKEDSVSATFMTPFAVFKNECSYNCASCALLNILLKNLISYYTRDKQFIDDEKLQKGA
>NC_021089.1|WP_015589092.1|587296_587971_-|DNA-repair-protein-RadC
MKNYKKGHRKRLREKIILDNGQSLLDYEVLEHILYSAYSRIDVKPIAKSLIENFGSLNKVFNADLEALQNVDDVSNAAISAIFCVKQAFVRSAREEIKNLPVIDNWEKLLDYLRISIGSLNKENFRVIYMNKKYRLIAEDLQNIGTVDQTSLYVREIIKRALLIGSTSIVISHNHPSGDTQPSNSDISLTRQLAEACQSIGIELIDHIIITFSSYFSFKENRLL
>NC_021089.1|WP_141457347.1|587144_587240_+|hypothetical-protein
MCKENWIPVSSTGMTSSRQPLRHPVTVSLSR
>NC_021089.1|WP_015589091.1|583629_586890_+|UvrD-helicase-domain-containing-protein
MRSNAINPNFSVWVNASAGTGKTKILIDRVLRLLLENKRNILCLTFTNAAANEMENRIHSILSKWAICSDSELIMDLEQLDFFPMYPYLSSQCVTLGSRKNKDYLTRARRLFSELENLGLTIQTIHAFCYKLISSFPIEAGIAPNCTLSECKELHSIIFNKVLHNETVQDDINLIATEIDENKLRDLLYTLCVKRSMSANDSKYIKDKLSAPDGIHDLQSETIEHVGRLAEILSEGSKRDQSYSEILYSTVIPAGIQKKRTSVSYSDDTGIKWNDTKIENLAKVFLKSESHEKKSISSIATKSILEKFKDAEQIIESVQNVVFTHIRDMNSYQIFKRTSSLLGIFKVYVDLYSSEKSKNALLDYNDIIGLATNLLSNPNYKDWILFNLDQKIDHILVDEAQDNSISQWKIITNLCDEFFAGNDEKRTLFVVGDVKQSIYRFQGANPHLFNYMQQYFHTKTGGRDWISCQLEKSFRSTPEVLMLVDRIFNNFRAEISFNDNEIKHVPHRENDQGYIEIWPALPRRKEKEQRALQIPLTCKEGYTIADRLLAQTIANRIHNWLNEGRILVAKDRHIEPRDIMILVRQRNVLVDYIISELKKANVPVVGRDYFRIMDYIAVQDLIALAEFLLLQANDLALANALKSPLFNFTEDDLFNIAYDRKEHSLWERIQDYSVVIYSELNYLINLSCIESPLALFTHILRTGKKKFAARLGLECFEVLDEFMNLVLQFENPSLQAFVQWIKKNNPEIKNDMQSERNAVRIMTIHKSKGLQAPIVFLVDTNTVPRSNESIIFDGMEVPFWCGKNNNAYCDQVKREKKLEDYNEYLRLLYVALTRAEDELYILSKETVQKGSWYDLITQYGTSYEKKQACLQPIFKEKVEVLCVNANYPYIYKKRDYFDVPVISLPPNLSMSFQHVTLEPREKKPVSSYLNDKKKSTGMTDGYARGLIIHSILQYMPKIEKERRKNWVRKYLDNINTSEDKDEIYSKILAFNEKYGYLFDLGGKSEITLSGIIDGEPVLVRLDRLCITQDKAIIIDYKSHRNVSVSLLNEIKKQMLIYKTLVQEIYPNKQVECVVIWVEDLTIQSDF
>NC_021089.1|WP_015589090.1|582681_583548_-|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MKSFCVKAPAKINLFLHVVDKKETGYHLIEGLFVFANLSNFLEIKVGEKDSRYDNSTVEFINSESRINNQYNTVMKAVNLLLRHAPVRTKVTVKVVKNIPIAAGLGSGSSDAGAVVRTLGKLWEIDRTILNEIALNVGADVPASVDSKPVFVRGIGEELCHIKKFSLPTNVVLVKPKKRFLSTPEVFSKHEGKFSEPIKWSDDAEKDLLKLLKETRNDLQEIAISFVPEIKDVISTLESQEGSILSRMSGSGVSCFGIFDSEENAKAAAVNIGKKQPEWWVCDTQLIV
>NC_021089.1|WP_015589089.1|582321_582678_-|Mth938-like-domain-containing-protein
MPLISENKNLINGYREGKFLVNNREYCGSIIIFPEKVIKLKESDINSKEHFKSFLTEEIEILIIGTGKTRNILSSSVKSYLMEQKGLNFEFMTTGSACRTHNVLISEDRFVVSYLIAI
>NC_021089.1|WP_010082521.1|594003_594444_+|TrbC/VirB2-family-protein
MIIERTMRNFLVILFIVFYAFDAHADGATDVMCNVIGYVHGIGGPMITVVIIGSSLLAIFGRMPWPALFALGMFVAVFFGAPQIVTKVTEKEVCCLFKGQTLENGKCVAAPGYERVGTGYACRSGWALTNKGYCIKAGQDPSKYWK
>NC_021089.1|WP_015589098.1|594455_595631_-|multifunctional-ribose-5-phosphate-isomerase-B/3-demethylubiquinone-9-3-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase
MLGIVSIASDHAGYELKSEIKPYLEALGYRVVDQGCTAKQKCVDYPNYAVKVVEDITSKKANYGILICGTGLGMSTVANRFEGIYAALCNSVEIAKLAREHGNANVLCLGAGFTASGLAKDIVKQFLETEFSKESRHKKRLDKLSNITSKKKKTKTYNEDEISKFAKMAGQWWDENGKFKPLHMMNPVRVSYIIEKIKELKKCNLKELSLLDVGCGGGILSESMARVGINVVGIDVCEENIKVAHSHAKKVGLNIEYIHTSIEELSNDKKYDVVLLMEVVEHVDNLELFMKKAIELLKPEGLIFISTINRTIKSFCLAIIGAEYILNWLPKGTHNWNKFLKPSEIANHLRENNVTLQNMAGMEYNVIKREWNLTKGVDVNYILCGLLDLTL
>NC_021089.1|WP_080717604.1|595865_595922_+|hypothetical-protein
MYNKNWIPVSSTGMTPSV
>NC_021089.1|WP_015589099.1|596531_598280_+|DNA-primase
MDHIDIIKSKLLLSDIVGKKVRLIKRGDSFVGLCPFHNEKTPSFSVSNTKGLYYCFGCLASGDAFEFISQTEGLSFKEALEKLASVTGVELPKNLSITKEDNKLFLALDLAANWFAQKNQGVVDYLKQRKISPKIIDKFKIGYAPSSGLKEYLNSSGIEDRILIDIGLVNKNFHDYFYDRLIFPIQSIAGRVIGFGGRVLSSEQQPKYLNSPESQLFKKRENLYGLNFALSEIRKKQHILVVEGYMDAIALHQAGISNAVAPLGTAISAEQIKNLWRFAKEISICMDGDSAGRHAATRVAELALPILEPGYTLKFVTLPSNKDPYDICNELAYKKEDVLTALDHSTKLHSEYLWHHIIDSNLQNYEKLAPEKYSILEHKFMEYVNTISNSSIRRYYRDYFYNKASELRSSFKKQIFNSKTGATKGEYLHNKSPELIEAEQNQAVILRIAVEFPEILNRPIFFEQFSHFEFTNEMKRLQQRVIDVISNKSKLDKEALLQELKQFNVIKYVFEKTSVLNSQLNERKSAEIVWNNIVLLKELNALRKERTEARLSGNLDLEERLIEQIEQIESSIQEMQMEFIEK
>NC_021089.1|WP_006280480.1|598517_599600_+|Fic-family-protein
MNWKNFRLSTRLNLEGPVIEQVYELITAVDSVKNSWQITKKLLPQTIERLTHSVIVTSSGASNRIEGNRLTDKEVEDLYKNLRVKKFKNRDEQEIAGYLEMLTLIFHDYTDIPISESSILHINNQMLLYSEKDLYHRGKYKASSNRVEAKDQNGKVVGIIFDPTPPYLVRKEVQELIDWYHWSLNNKFKHPLIIVANFVFEYLAIHPFQDGNGRTSRLMTNLMLLQQGYDFVSIVSHEKIIETNKLDYYLALNKTQSSWKSGKEDISPWLIFFLNVLKTQANEAHYILERENTEYLLSRKQLFFWEWALSLADKEFSRKDAIEALGFPPRTVEAITKKLLGMKYLQRLGEGKATRYKVII
>NC_021089.1|WP_010082072.1|600993_601158_-|IS3-family-transposase
MSNKGCCYDNSVAESFFSSLKREILIDTSQHSAQQTRTAIFEYIEIFYNKQRHY
>NC_021089.1|WP_010082071.1|601150_601312_-|hypothetical-protein
MSSAINKQLVMNSLLMAINRRKPVKNLLLHSDQGSQYTAQGYQYLLAVKNIDE
>NC_021089.1|WP_144054591.1|601315_601738_-|IS3-family-transposase
MVTAIKYRNYIGFSASGYYKWTTRKISSRESANKELLAAIQKIYQVSKCRYGAPKIHAELKALGKSCNLKTVQSIMQKNDIRAILRRKFKIKKQQTDNRAVAPNILDQNFIVDQPNKVWDYLHQNQGGMAIFGSNNSHVW
>NC_021089.1|WP_081600778.1|601691_602045_-|transposase
MVREYTAEFKLEAVKLANEQRKAGQTITKIAKDLGIKGGLLGKWIKKHNEKKSAADAFPGRGNMAPYDKERFDLQSKSNKGKRHLKKSPGQSKRVKYFFIKEHSNCYKVQELYRIFC
>NC_021089.1|WP_015589100.1|602332_602647_-|septum-formation-initiator-family-protein
MLISKKKQKLLCLSAALLISSLTLYFSISTITGKRGLLTLIDLKKEIEYNKLLLKDVSSEKEKLDNKVFGLYEKSLDLDLLDEQAKNALGYVNPNELMVVLDVK

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Crispr_ID: NC_021089_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021089_6

724613-724713

Orphan

Consensus_repeat	Method
CGCGGTATCTCTAGATCCCGCTAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021089_6

>merge|NC_021089|6|724613-724713|CRISPRCasFinder
CGCGGTATCTCTAGATCCCGCTAACAAGCAGCGGGATGACGAATTACTTAACCATCATCTACACCGTCATACCGCCGCGGTATCTCTAGATCCCGCTAACA

>NC_021089|6|5|724613-724713|CRISPRCasFinder
CGCGGTATCTCTAGATCCCGCTAACA	AGCAGCGGGATGACGAATTACTTAACCATCATCTACACCGTCATACCGC
CGCGGTATCTCTAGATCCCGCTAACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_021089.1\|WP_015589165.1\|721343_721736_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589170.1\|729375_729840_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_010962781.1\|719719_720148_-\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|372687
NC_021089.1\|WP_015589168.1\|726821_727661_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213022
NC_021089.1\|WP_015589166.1\|721816_722866_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|224481
NC_021089.1\|WP_179943634.1\|731728_732064_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131744
NC_021089.1\|WP_010962790.1\|730078_731275_+\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|236468
NC_021089.1\|WP_010962793.1\|733388_734525_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_010082473.1\|732057_732510_+\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|272871
NC_021089.1\|WP_015589161.1\|715060_716260_+\|deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl\|CDD\|234934
NC_021089.1\|WP_007549395.1\|731274_731673_+\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
NC_021089.1\|WP_010082472.1\|732596_733385_+\|succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|235652
NC_021089.1\|WP_010962783.1\|721058_721343_-\|DUF2610-domain-containing-protein	unknown	unknown	gnl\|CDD\|371344
NC_021089.1\|WP_015589169.1\|727783_729292_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	unknown	unknown	gnl\|CDD\|223679
NC_021089.1\|WP_015589167.1\|725292_726867_-\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|274573
NC_021089.1\|WP_015589162.1\|716259_717342_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|273015
NC_021089.1\|WP_015589164.1\|720221_721052_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|236996
NC_021089.1\|WP_015589159.1\|713870_714545_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NC_021089.1\|WP_015589160.1\|714584_715013_-\|HesB/YadR/YfhF-family-protein	unknown	unknown	gnl\|CDD\|272875
NC_021089.1\|WP_015589163.1\|718936_719617_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|238244

Protein	Function_ID	Function_description	E-value
NC_021089.1\|WP_007549395.1\|731274_731673_+\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	7.12478e-49
NC_021089.1\|WP_015589166.1\|721816_722866_+\|SAM-dependent-methyltransferase	gnl\|CDD\|224481	COG1565, COG1565, Uncharacterized conserved protein [Function unknown].	5.92883e-89
NC_021089.1\|WP_010962790.1\|730078_731275_+\|cell-division-protein-FtsZ	gnl\|CDD\|236468	PRK09330, PRK09330, cell division protein FtsZ; Validated.	0
NC_021089.1\|WP_179943634.1\|731728_732064_+\|hypothetical-protein	gnl\|CDD\|131744	TIGR02697, hypothetical_protein_WD_0725, Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode. [Mobile and extrachromosomal element functions, Other].	6.36291e-12
NC_021089.1\|WP_010082473.1\|732057_732510_+\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|272871	TIGR00043, Endoribonuclease_YbeY, rRNA maturation RNase YbeY. This metalloprotein family is represented by a single member sequence only in nearly every bacterium. Crystallography demonstrated metal-binding activity, possibly to nickel. It is a predicted to be a metallohydrolase, and more recently it was shown that mutants have a ribosomal RNA processing defect. [Protein synthesis, Other].	4.93428e-42
NC_021089.1\|WP_015589159.1\|713870_714545_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.88137e-90
NC_021089.1\|WP_015589161.1\|715060_716260_+\|deoxyguanosinetriphosphate-triphosphohydrolase	gnl\|CDD\|234934	PRK01286, PRK01286, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	7.94466e-164
NC_021089.1\|WP_015589163.1\|718936_719617_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|238244	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.	9.91385e-113
NC_021089.1\|WP_010082472.1\|732596_733385_+\|succinate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	1.15046e-162
NC_021089.1\|WP_010962783.1\|721058_721343_-\|DUF2610-domain-containing-protein	gnl\|CDD\|371344	pfam11020, DUF2610, Domain of unknown function (DUF2610). This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed. This domain is related to the Ribbon-helix-helix superfamily so may be a DNA-binding protein.	2.84712e-41
NC_021089.1\|WP_015589169.1\|727783_729292_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	0
NC_021089.1\|WP_015589167.1\|725292_726867_-\|penicillin-binding-protein	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	5.38863e-177
NC_021089.1\|WP_015589162.1\|716259_717342_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	1.03356e-103
NC_021089.1\|WP_015589164.1\|720221_721052_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|236996	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional.	7.06505e-172
NC_021089.1\|WP_015589168.1\|726821_727661_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213022	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes many rhizobial NodB chitooligosaccharide N-deacetylase (EC 3.5.1.-)-like proteins, mainly from bacteria and eukaryotes, such as chitin deacetylases (EC 3.5.1.41), bacterial peptidoglycan N-acetylglucosamine deacetylases (EC 3.5.1.-), and acetylxylan esterases (EC 3.1.1.72), which catalyze the N- or O-deacetylation of substrates such as acetylated chitin, peptidoglycan, and acetylated xylan. All members of this family contain a catalytic NodB homology domain with the same overall topology and a deformed (beta/alpha)8 barrel fold with 6- or 7 strands. Their catalytic activity is dependent on the presence of a divalent cation, preferably cobalt or zinc, and they employ a conserved His-His-Asp zinc-binding triad closely associated with the conserved catalytic base (aspartic acid) and acid (histidine) to carry out acid/base catalysis. Several family members show diversity both in metal ion specificities and in the residues that coordinate the metal.	1.35587e-78
NC_021089.1\|WP_015589160.1\|714584_715013_-\|HesB/YadR/YfhF-family-protein	gnl\|CDD\|272875	TIGR00049, Uncharacterized_protein_in_nifU_5'region, Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.87377e-32
NC_021089.1\|WP_010962781.1\|719719_720148_-\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|372687	pfam13717, zinc_ribbon_4, zinc-ribbon domain. This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR, pfam12773.	3.55208e-11

>NC_021089.1|WP_015589166.1|721816_722866_+|SAM-dependent-methyltransferase
MLTYIHELIDKSQGSISISDFMNAVLYHEKYGYYTSKLPLGKDGDFTTAPEISQLFGEVIAVWIMHTWEKLGKPSKFSLVELGPGKGTLIHDIIRVTKKYSSFFNSMLIHLVEISPTLRKIQKEKLKSLDVNWHKNIDNLPEQPTIFLANEFFDALPVDQFVYRDGQWYENMVTKQDDGSLLVSCQCVTLESRKKESWIPVSATQMTNGKFFNGAVVEICSVGVEILKKLEKKIYNNKGAALIVDYGYVYPAYKSTLQSIKQHKYANFLENVGNSDITALVNFQALRDSLKHVDCEILTQREFLYLFGIKERTQALMKSASDEQKNRIFSEFLRLTENMGTLFKAMLLI
>NC_021089.1|WP_015589165.1|721343_721736_-|hypothetical-protein
MSNSASVMDDKNTDYVVLIAQDDSIEYKFEEAVNFIENKVINADGLTLAEVFQVLVQMLDGDLALVKKVLAYANIMAKHGMKVAKESQLSRADVRRALEGRESVVNRQDFIKKPPLPPAIKSTKKKSRGL
>NC_021089.1|WP_010962783.1|721058_721343_-|DUF2610-domain-containing-protein
MAESIKKFTVQCDFKGQSSPFAIYIGNPKSDAHPIHHQDSWLVKERGGNIPNKVKESLQKLYKLSQENGVSFSELCAYAITVVSNNDKKSDDKE
>NC_021089.1|WP_015589164.1|720221_721052_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MEGLQLKKTQSEIEDIWKNREKFNDCNLKKTARIAIKEVIELLDSGKIRVAEKLSSGEWVVHKWIKQAILLHFLTEENKIIDNTNCWFDKIGNKFSEWNEEKFRQLKIRAVPGCFVRRSAYIGTNVVLMPSFINVGAYVDSGTMIDTWSTIGSCAQIGKNCHISGGVGIGGVLEPIQASPVIIEDNCFIGARSEVAEGVVVREGSVLGIGVFIGASTKIIDRETSKVFYGEVPPYSVVVPGSIPSKNNISTYCAVIVKKVDEKTRSKISINEILRD
>NC_021089.1|WP_010962781.1|719719_720148_-|zinc-ribbon-domain-containing-protein
MKIQCNSCTKTYLVSPKQIGASGRKVKCTNCNHIWHEYLEEVSNKSHSANIQEKKVSGRNFLQNLAFTTLAFATATGLCVVIANGIFPREMNKAYKTISLYKDSISYKLGYKKEQTESPNVKKLAVNKFYQDYLFLSNLRSS
>NC_021089.1|WP_015589163.1|718936_719617_-|ribulose-phosphate-3-epimerase
MSIKIAPSILSADFAKLGEEVRKISDLGVDYIHIDVMDGNFVPNITIGPSVVSAIRKYSNLPFDVHLMVKSPGNHIESFINAGADIITVHAEAEIHLERLIRKIKSYKNVNDAKKPIQAGVSIVPSTSPSVLEYIIHELDIVLIMTVNPGFGGQEFIHSQLNKISTIKKMIQERNLKTQISVDGGINFSNAADIIKAGADILVAGSAIFKAEDIKKAVNDLKNPSL
>NC_021089.1|WP_015589162.1|716259_717342_+|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MTDDHFMSIALRLAEKNLGNVAPNPAVGCVIVKDGTIVSEGYTGIGGRPHAEVVALQNAKDSTHGATIYITLEPCCHHGVTGPCTAKIIKASIKRVVIATIDPDSRVSGRGMKALKEAGIEVEQGIMQKEAKELNVGFFTTKELHRPFIACKVATTLDGKIATFTGDSKWITSENTRNWVHELRAKYDAIMIGSNTLINDDPLLTCRLPGLGSRSPIRLIIDSQGRLKEEHNIAKTADKVITWVITNKEVEKKIKNINYLVVNSSNAGKVCLKDMALKLVSEIGITRLLVEGGGVLITELLKCNLIDRLIICRSGKILGNDATPFVGDLGIQFINNCYQFKKTKIIEFSEDIVEVWDRSS
>NC_021089.1|WP_015589161.1|715060_716260_+|deoxyguanosinetriphosphate-triphosphohydrolase
MSNNNFLLNYACFPSKTKGRYFKEPEDENRSCFQRDRDRIIHSNAFRKLEYKTQVFINYEHDYYRTRLTHSLEVAQIARSIARRLGLNEDITECIALAHDLGHPPFGHAGEDALKKSVQDLNLDNEKYEFDHNVQAIRILTYLEQKHADFDGMNLSWEVIEGVVKHNGPLLGQNEESSTSNQLLLEYNKKYDLKLEEFSSIEAQVASIADDIAYSVHDLDDALRANLVTIEDLLNVPLIEKMFKDIRSRYSELPQSKLIHESLSGTIGTMISDVVSQTERNIEDHKIKSVEDVRSLNKMLVTFSPEVANATKEMKRFNMEKIYRSYKLSRTMNKAKRIIQELFQCFYENPGLLPTEWSKLACESQRSVIICDYISGMTDRFAIHEHRRIFDTSYEMTSF
>NC_021089.1|WP_015589160.1|714584_715013_-|HesB/YadR/YfhF-family-protein
MSTNYNINLTDNALKKIHSLAEQEGDKSSILRVAVSGGGCSGFKYNFLMDQMNKNLSLDDEDEDDDYEESEDYRSHSSFSKKGKDIVINDENGNPVLMVDNCSAKFLNNSVIDYTEDLSGSGFQIKNAFAKSQCGCGNSFSV
>NC_021089.1|WP_015589159.1|713870_714545_-|ABC-transporter-ATP-binding-protein
MGGNVALELTSVDKSFKDNSAVVKDINLSVTRGQVVALIGNSGAGKTTILQIAGLLDKPTSGIVTIDGINCTQASNKHKTHVRRNFLSFVYQFHYLLQELSVLENIMLPQLIAGKSKAEAKKNSQAMLEKFGLENKASSMVSEVSGGERQRVAIARSIVNSPKLLLADEPTGNLDPTNSFKVFLLLHSYVKENNSSMLIVTHNHLLAEKADCIFQLRDRSLVKL
>NC_021089.1|WP_015589167.1|725292_726867_-|penicillin-binding-protein
MWTKNKVFNRRAFILGGIQLTISAVFSCRLYNLQIRNRQKYEALSNSNRIRVATIMPKRGKILDRNSIELAVNKISYVVLFDGSGKEVDLQTLSEVESKIAKSSEKITALYKRYYPFGSMCSHVIGYTKRQQGISEVGISGIEYTYDHILKGKSGKSEQEINSKKRVIKELSSIPQQDGQDVQLTIEINLQEKTAEVFKDHQGSAVVIDVNNGEILALYNSPSYDNNLFASRLSNETWENLNAPSLPLVNRALSYQIPPGSIFKVIVALAGLKDGIITPEEKFSCKGYMKIGERKFRCLKSKVHGYVSLNEAMALSCNTYFYNIGKKISVDSLVEMARKFGIGSGPLIGTFKEEAPGLLPDRDWRTRKLYSQWYLGDTINLVIGQGYMLTTPLQLAVLAARIATGKEVIPHIEMSKTIQDFPDIDVDCEHLSIVRKAMFDVVNSKTGTYKKGLSGIQIAGKTGTPEINSKGESHKLFIAYGPYHNPRYAISVFIEHGKAPRQDVAIANEIFQYMLETMSIKLLA
>NC_021089.1|WP_015589168.1|726821_727661_-|polysaccharide-deacetylase-family-protein
MFIRIITFFLLYSSTAFCSDCNFNLPYCGLSCNLDLSYRNLSNIKKLLNNDDKFVALTFDDGPSNNRINDIINVLESYEAKATFFVLGERINEKTSEIVKKIHESGHELGNHSWSHRKLTSLSSEEQLQELEKTNTAIKNAIKQDVKWFRPPYGCYDDNLIENTDQLNMYSILWTVDSLDWQGDKPETLVERVLSNVHNGAVILFHDHNNRSNTIEALPHIIKILKKSDYKFVTLSEWEKRVCNTVKARSVTIKEGKKVCFEGMLCGQKTKSLTAEHSY
>NC_021089.1|WP_015589169.1|727783_729292_+|YifB-family-Mg-chelatase-like-AAA-ATPase
MIANINTVALQGISTVNVNAQIHMANGIPAFNIVGLPDKTVAESRERIRAALNSINLLLPPKRITVNLSPADLLKEGSHYDLAIAIGLLVVMNVIPVEKVQSYIIMGELALDSRVIPVSGVLPTAINAKKDNKGVICPRGNGVEAVWVKNVSILAIEKLTDIIRHFKGEQLIQPVIFNYSDAPKEKRLVPDMKDIKGQVVAKRAAEIAAAGGHNMLLVGPPGTGKSMLAKRFIGLLPDLTEQEIIDVNIISSITKTGNEIFKVTRPFREPHHSCSMPAMIGGGKNAKPGEITMAHNGVLFLDELPEFPRLVLDSLRQPLEDRKVTVARANAHITYPANFQLIAAMNPCSCGYLGDASRSCNKAPKCGTDYKNKISGPLLDRIDICIEMPNVSILSPEISVEGESTKIIRERVIAARKVQTERYSELNIRCNSEVSGEAFNKFTEPDQAGLELLKYVLKENYISNRGYTRVLKVARTIADLAKSEEVKRAHIAEALNYRIKVY
>NC_021089.1|WP_015589170.1|729375_729840_+|hypothetical-protein
MALTNYEYRKGDGIFHAISEGYIRAEKYWGIPGAAGGAGQYAMHNKGRTALFPLAVASVVFTAMHMKAGFVSAAEASGFLAKTASYFVGTNQAIAASLPGFIGTGVAGQIVAGAIMAIAAAAVLYGTYQIASKLKDVAVEALKGEEKDKEANNL
>NC_021089.1|WP_010962790.1|730078_731275_+|cell-division-protein-FtsZ
MSIDLSLPELPILHPRITVVGVGGAGGNAVNNMIQSNLQGVNFVVANTDAQALEKSLCDKKIQLGINLTKGLGAGALPDVGKGAAEESIDEIMEHIKDSHMLFITAGMGGGTGTGAAPVIAKAAREARAAVKDRAPKEKKILTVGVVTKPFGFEGVRRMRIAELGLEELQKYVDTLIVIPNQNLFRIANEKTTFSDAFKLADNVLHIGIRGVTDLMVMPGLINLDFADIETVMSEMGKAMIGTGEAEGEDRAISAAEAAISNPLLDNVSMKGAQGILINITGGGDMTLFEVDAAANRVREEVDENANIIFGATFDQAMEGRVRVSVLATGIDGRNNKSETSPISQSEDSEKEKFKWPYSQSESTQDKTLETKPAEQVSEGAKWGSNIYDIPAYLRRKK
>NC_021089.1|WP_007549395.1|731274_731673_+|EVE-domain-containing-protein
MQFWLLKSEPSEYSWQKMEKEQVVEWDGVRNYQAQNYMKIMKASDLAFFYHTGKEKAILGIVEVFKEYYHVNDPKFGLVNVKFLKPLNNQVTLNNIKQNPLLKNMTILKQPRLSIAPVSEIEWNEIIRMSDV
>NC_021089.1|WP_179943634.1|731728_732064_+|hypothetical-protein
MNICLEGSALNVIADFASNTKVSFQFLTLESSLNATTLKPLCFNIRLATFIFTNLMSNQNSWIPVPRHWDDILLVYNIRTVVYMTQGSITLLFWIPVSAICMTPLLMCHSC
>NC_021089.1|WP_010082473.1|732057_732510_+|rRNA-maturation-RNase-YbeY
MLEVNILDKKWCSIIENPKNFVLGVINASLKELKIDHYKPNISIALADDDLLHQLNLKFREMDKPTNVLSFPYEQLSNECDLGDIAISIDTIKRESHEYYIPILAHIAHMLVHGLLHLLGYDHQKKDEEIIMKNLEREILASLGYNMCAI
>NC_021089.1|WP_010082472.1|732596_733385_+|succinate-dehydrogenase-iron-sulfur-subunit
MVQFSLPKNSKINQKGKIYPIPARAKNIRRFQIYRWSADDEKNPRIDTFFIDMDSCGPMVLDALIKIKDEIDSTLTFRRSCREGICGSCAMNIDGTNTLACTRSIHDIKGDVKIYPLPHMYVIKDLVSDLSQFYEQYKSIKPWLQADKPALPNKEYSQSSEDRKKLDGLSDCILCACCSTGCPSYWWNSDKFLGPAILLQAYRWIADSRDNKTGERLDVLNDPFKLYRCHTIMNCTKTCPKGLNPARAIAKVKQLMVEREGV
>NC_021089.1|WP_010962793.1|733388_734525_-|hypothetical-protein
MFFLYEVVLILILILFFLSYSKLKISNKIKNLQHQNVIINNLIDTVNDGFYIWDAKKRIEKFSPNLLILLNTVFYSFNEFVNFFEQSESLIKNFVEAKEINKSFTLDLKSKDSEVYCICYGRSIIDDSNNVIGVLLWIRNVSDCKIKANGLELENSKLTQEVESYKNVFNSLPFPILRYNKSRKVEFYNLFYDKYVDGSKKFAITGSAHSTKPGRHVITYKNEPKVFDFVKIPIQGSGSIVMYGKDVSDAEKLYTELNSYLATQKNLLERLPVAIVIYSKNQKLKFYNNAFIKTFQFDPKFLASYPTYHEVMLYLFESKKLLEKEDFQTISNQRHELFKKLFESYDDTMHFTNGKAFRVLTIPYASEGLLFSYEECKR

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Crispr_ID: NC_021089_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021089_7

763657-763761

Orphan

Consensus_repeat	Method
CCGCTAACAAGTAGCGGGATGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021089_7

>merge|NC_021089|7|763657-763761|CRISPRCasFinder
CCGCTAACAAGTAGCGGGATGACGAGGTTATCGTCATGCCACCGCGAACCGTCATACCGCGATTCATTCGCGGTATCTCGGCCGCTAACACGTAGCGGGATGACG

>NC_021089|7|6|763657-763761|CRISPRCasFinder
CCGCTAACAAGTAGCGGGATGACG	AGGTTATCGTCATGCCACCGCGAACCGTCATACCGCGATTCATTCGCGGTATCTCGG
CCGCTAACACGTAGCGGGATGACG

Protein	Signature genes	Signature genes Name	Protein_function
NC_021089.1\|WP_015589186.1\|761912_762851_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NC_021089.1\|WP_007548863.1\|773972_774422_+\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|235455
NC_021089.1\|WP_012673206.1\|762837_763437_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239313
NC_021089.1\|WP_015589189.1\|769936_770497_-\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|187714
NC_021089.1\|WP_015589183.1\|758007_759387_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235779
NC_021089.1\|WP_010962821.1\|771210_771741_-\|Na+/H+-antiporter-subunit-E	unknown	unknown	gnl\|CDD\|237159
NC_021089.1\|WP_007550039.1\|764375_765248_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_006279382.1\|770801_771218_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589184.1\|759389_760310_+\|tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|274042
NC_021089.1\|WP_007550037.1\|765363_765702_-\|glutaredoxin-3	unknown	unknown	gnl\|CDD\|239510
NC_021089.1\|WP_044471264.1\|756254_756536_-\|transposase	unknown	unknown	gnl\|CDD\|290455
NC_021089.1\|WP_012673252.1\|752174_754154_+\|porin	unknown	unknown	gnl\|CDD\|173412
NC_021089.1\|WP_015589181.1\|754590_755397_+\|DUF2163-domain-containing-protein	unknown	unknown	gnl\|CDD\|274038
NC_021089.1\|WP_022626339.1\|755621_755873_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_010082493.1\|765762_766695_+\|riboflavin-biosynthesis-protein-RibF	unknown	unknown	gnl\|CDD\|235536
NC_021089.1\|WP_015589182.1\|756905_758015_+\|PQQ-like-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|379140
NC_021089.1\|WP_015589188.1\|768607_769927_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_021089.1\|WP_006279329.1\|766691_767168_+\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|237813
NC_021089.1\|WP_015589180.1\|751145_751967_+\|3'-5'-exonuclease	unknown	unknown	gnl\|CDD\|378396
NC_021089.1\|WP_015589190.1\|771809_773852_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|222980

Protein	Function_ID	Function_description	E-value
NC_021089.1\|WP_015589186.1\|761912_762851_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.81856e-147
NC_021089.1\|WP_007548863.1\|773972_774422_+\|SsrA-binding-protein-SmpB	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	2.88196e-80
NC_021089.1\|WP_012673206.1\|762837_763437_-\|peroxiredoxin	gnl\|CDD\|239313	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure.	8.00814e-97
NC_021089.1\|WP_015589189.1\|769936_770497_-\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|187714	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART). Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.	1.28404e-94
NC_021089.1\|WP_015589183.1\|758007_759387_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235779	PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.	0
NC_021089.1\|WP_010962821.1\|771210_771741_-\|Na+/H+-antiporter-subunit-E	gnl\|CDD\|237159	PRK12651, PRK12651, Na+/H+ antiporter subunit E.	1.82371e-49
NC_021089.1\|WP_010082493.1\|765762_766695_+\|riboflavin-biosynthesis-protein-RibF	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	9.23812e-114
NC_021089.1\|WP_015589184.1\|759389_760310_+\|tyrosine-recombinase-XerC	gnl\|CDD\|274042	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerC, one of two closely related chromosomal proteins along with XerD (TIGR02225). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and homologs of XerC on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerC, as some apparent XerC examples score in the gray zone between trusted (450) and noise (410) cutoffs, along with some XerD examples. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	2.6083e-120
NC_021089.1\|WP_007550037.1\|765363_765702_-\|glutaredoxin-3	gnl\|CDD\|239510	cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including E. coli GRX1 and GRX3, which are members of this subfamily.	5.10589e-38
NC_021089.1\|WP_044471264.1\|756254_756536_-\|transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	3.65755e-08
NC_021089.1\|WP_012673252.1\|752174_754154_+\|porin	gnl\|CDD\|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	3.79529e-10
NC_021089.1\|WP_015589181.1\|754590_755397_+\|DUF2163-domain-containing-protein	gnl\|CDD\|274038	TIGR02218, conserved_hypothetical_protein, phage conserved hypothetical protein BR0599. This model describes a family of proteins found almost exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus gene transfer agent, which packages DNA. An apparent exception is Wolbachia pipientis wMel, a bacterial endosymbiont of the fruit fly, which has several candidate phage-related genes physically separate from obvious prophage regions. [Mobile and extrachromosomal element functions, Prophage functions].	4.23515e-102
NC_021089.1\|WP_015589182.1\|756905_758015_+\|PQQ-like-beta-propeller-repeat-protein	gnl\|CDD\|379140	pfam13360, PQQ_2, PQQ-like domain. This domain contains several repeats of the PQQ repeat.	4.02229e-39
NC_021089.1\|WP_015589188.1\|768607_769927_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	3.83039e-62
NC_021089.1\|WP_006279329.1\|766691_767168_+\|signal-peptidase-II	gnl\|CDD\|237813	PRK14775, PRK14775, lipoprotein signal peptidase; Provisional.	1.6224e-38
NC_021089.1\|WP_015589180.1\|751145_751967_+\|3'-5'-exonuclease	gnl\|CDD\|378396	pfam10108, DNA_pol_B_exo2, Predicted 3'-5' exonuclease related to the exonuclease domain of PolB. This domain is found in various prokaryotic 3'-5' exonucleases and hypothetical proteins.	6.95957e-99
NC_021089.1\|WP_015589190.1\|771809_773852_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|222980	PHA03095, PHA03095, ankyrin-like protein; Provisional.	1.48763e-41

>NC_021089.1|WP_012673206.1|762837_763437_-|peroxiredoxin
MNLVTKSAIDFTASSVLSDGEIVDDFCLSKRIKNKYAVLFFYPLDFTFVCPTELISLNNRINEFAKRGVEVIGISVDSKFSHYKWRNTPVNDGGIGEISYTLVSDIKKSISRDYGVLYDDSIALRATFVIDDKFIVRHQSINDLPLGRNIDEFVRIVDAIKHNEEHGEVCPAGWKKGKPAMQASDEGVADYLNSYSEEL
>NC_021089.1|WP_015589186.1|761912_762851_-|thioredoxin-disulfide-reductase
MKNYKFSTKVLIIGSGAAGYAAAIYAARANLEPIVVTGMQPGGQLTITTDVENYPGFVSIQGPELMEQMRLHAEKVGAKIIDDEIKSVEQLEDSNEYRFRSSGNINDYYSDAIIIASGAQAKWLGLESEKKFQGYGVSACATCDGAFFRNKVVAVIGGGNTAVEEAIFLTRFAKEVILIHRRDKLRAEKVMQDRLFKNDKIKVMWNHTVEQILGEENPKRVAGIAIKSAETQELKVDGVFIAIGHAPNTGIFKGFVEMDEQGYIITKPGTTLTSRAGVFAAGDVQDKVYRQAVVAAGTGCMAALDAEKFLES
>NC_021089.1|WP_015589184.1|759389_760310_+|tyrosine-recombinase-XerC
MDLGSIIEKWYEWLRCNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLKNLSIPELRSWLTSRYARGVNARSNTRALSVIRNFFKYIKNNHNIDNEAVFSLSRPIQRRTLPKALSIPNIKTLLKEMKLSDLGEPWVVKREIAIIVLLYGTGLRISEALNLRVSDISSENLIITGKGDKQRQVFILPVVKKCIQEYIKACPYLDEAQHLFLGVRGKKLGRTYVANRLQKIRRMLNLPEILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTHLNYQDVFNMYKNFQQGLEKKSKL
>NC_021089.1|WP_015589183.1|758007_759387_+|dihydrolipoyl-dehydrogenase
MTDYDLIVIGGGPGGYKCAIAAAKLGLKVACIDKNSIFGGTCLRVGCIPSKALLHSSYQYAHTKNDLSKLGIKIKDASFDLKEMLGYKDARVQELGKGIEYLFNLHKITKINGLASFDQGNLEVSVEGKVLKTKNIVIATGSDVISLPGINIDEKDIISSTGALSLTEVPKKLVVIGAGAIGLEMSSVWRRLGSEVTVVEFFDRIAAAMDGELSKSLLSSLQKQGIKFLLSTKVEEIKQSSNSLSVKVCSVKDNQTNVIEADKVLVAAGRKPCTENLGIDEKIEKDNRGFVQVNNRYETNVKGIFAIGDVIGGAMLAHKAEEEGVAVAEIIAGQVPHVDYEIIPSVIYTHPAVSSIGKTEEELKSVGRKYKVGKCQFAANGRAKITDDAEGFVKVLTCSRADTILGVHIIGAYADTLINEAAVAMAYGAAAEDIYRICHSHPDINEAFRDACIDAFFKK
>NC_021089.1|WP_015589182.1|756905_758015_+|PQQ-like-beta-propeller-repeat-protein
MKVIIVMIMLLCSSYTMASERISLVDKKLSQGYVAPVLIENSVILSDKHGALYSFDIDNSKAMNWKLHLSHRKKIGNMSLSHYEKNVFFIVDNTLHAIGAKTGKIEWEKELRAPVRGKAAVINNKLVVLTIDNYLYVFDIKDGSFVWTYQNGINEVRGLYSISPAISNDKIIAPFSNGELIAFNEDGKKLWSQKLATNLLDTQLTDVTTTPRVLGDTLIATNNSYIYSIDVKSGNILWSKSLQVKSVSDIESYYSPLIPAEKQKEGGRIFIVTKDDKIIGLDIKNGETVWTSDLIENTQLFAPIMHAHTLWVTSNKGSMFAFPGSESAGKVVKVPGNVFHTPVFTRNKIYVTTEGKGVYSLENRFVFYD
>NC_021089.1|WP_044471264.1|756254_756536_-|transposase
MRVSNCHEYNKFLEKRGNIFRYIDKAIENWYENSPKMQGGNYIYSDKVVILVHIIVNLFRIGLRQTVGFIKGYLQQIGRDLAVISYSQASKKT
>NC_021089.1|WP_022626339.1|755621_755873_-|hypothetical-protein
MAERNAAIRLIKSYSEDGMKRWKRQTNYGKRSYVESFFSRLKQTFGFNFRNKSEINRGKELLLKCYLLNQFTDIGMAKFEMAT
>NC_021089.1|WP_015589181.1|754590_755397_+|DUF2163-domain-containing-protein
MQTTLKNHLAGELLTTATCWKLTLAGGEVMGFTDYDEDLNIDNILYKSSSGFAASSIILNSDLKTDNLEIEGILNSVDIKEKDVLSGKYDFANIEIFLVNYKDLTQGTMNLHSGIFGKVTLSSGRFIVEIRGLSAKLERSIAELYSPACRAQFCDDKCKADTKKFSKISTITKVIDERRFEDTNLTESDEYYKHGVVKFFGSIAFEGVVKEYKNKVVTLFTSPPYQIFAGDKYSILAGCDKTFPTCRSKFNNTVNFRGEPYIPGFYIV
>NC_021089.1|WP_012673252.1|752174_754154_+|porin
MKKSMYTRTALVSLLTLCSFSSFAADFPDESMKEIKKQESTKTSGKTEVMKTSNKKLKEKMDRICNADPRKKAEELKKKEELRLAAEQKKKEEIRLANEKKAKLIEDSKAKALNAKNSNIEKGKVSKTKRSKTKNAKVEAKDVKKDIKVVNKNTEEKGKASPVVSVGGVDIIDTNQGQSNLRITFGGVVDAQGYGKAGPSGADYKRYNVMPNRSTEYYNATPDITKGANPIFYEGIGNIGDYSNDMGMIADAILHLRAENKNEDLGLLYGADVQFHVPVTEGKGASQGVYAAKGRSAHVFVNSKYGDVKLGYQFGPEALMRLDATRIATVDGAADSDWFRKVNLEGSAASFPFYVTPRLYTESFSSESEKFSFRMAGKYNKGVMTTLPFRVAYYSPNYMGARFGISYSPRYDSGLFTVKETVSEDKGGKIEHKETIKHVGPDYEHIVSAGASYEYDFDKHNIKVKTSAVGEYGFPKQPSKDKHLYKEFVEYNDLMGVNFGVSADYKINEDQGVKFAASFAYLGKSGQPKGIKKLIGDTYTEIDSKDATDGKRVEGLKAQFGKDSIDTMYWTVGAGYQHENIYTSLTYFGSRMNDKDMLHDGALGVQYDLSPACSKNKFVPYAALHYFMTNETGKLKDESDADVPSNQGILLLTGVKFSF
>NC_021089.1|WP_015589180.1|751145_751967_+|3'-5'-exonuclease
MLNSLLVFDIETIPDVNSCKNLLNISDDSSVEEKRDALTKYHLEITNGQNSFLRQPFHLVVVISFLLCNISYQSGYEVFTLQEIRSGGTLNSSEKELVKGFFNYISEKKPRLVSFNGRTFDIPVLKYRAMVHGIQAEYFHKAGDKWNSYNQRYSSDWHCDLLESLSDFGASARVKMNEVCAAFNLPGKIGVDGSQVMDLYDSGKIQEIRDYCETDVINTYLIYLRFMHHQGRITTESYNKSAEELLLECEKKEYLKKFKEEWQITCGGKILLP
>NC_021089.1|WP_007550039.1|764375_765248_-|hypothetical-protein
MTKNISIISRNLISIELVNKQDLENFIKIFTVLDKHIAAKTLFTEEVRIEYKQHNGIEVVELLKDTDFTYHEVENVLNHLSKHGMKVPSSVIAHTLFAAYNHALEFKDVAFSFSEGSPQFNIRVSKNTFIITPMSEENLELNSQSSKKLIESLQSEKNIYDCIVEENTIKVIVHSEIHQAINLIIKSLIKSRLLAKEEEGKFKEKLRQLAFKDQAFVEYSSIKTISRYPHNHPLRKHESVTKDIENILCDFIANENSEFAIERLNRLSSAVSPDTPRIITKTIDKLVKFH
>NC_021089.1|WP_007550037.1|765363_765702_-|glutaredoxin-3
MKNVVIYVKKGCPYCIRAKDLLDKKGVKYEEIDVLKNSDLFNDIKSKYNVRTVPQIFINDKHIGGCDKLMDLEKEGKLDDMLNNNDNHTDVTTYTNSNDECGECVIPHDDFM
>NC_021089.1|WP_010082493.1|765762_766695_+|riboflavin-biosynthesis-protein-RibF
MKIIYNCEQGIENNIALTFGNFDGIHLGHEFAISTLKKVAQERGLPSAVLTFEPHPSTVLFGRNNFRLIDQEQKKELISSYGIDYLYIINFNRGFSEVSCDDFISEILIDKYGAKHIIVGENCTFGHKRLGNILTLEKYSEIYGYSLTKLEPLTIDGKICSSSSIREYVQRGEIEIANKLLGRPYQVSGVVTKGACRGREIGFPTINIPIEDCMIKPKFGTYYARVTFPDSNPNWLYGVVNIGMRPTFKDLKKPIIEMHIFDFDEDVYSHKVNIQLLKFIRSEKKFHSIEELTKQINYDILKVYRLKANL
>NC_021089.1|WP_006279329.1|766691_767168_+|signal-peptidase-II
MKKLCLVVILIIVLIDQTSKLYINSLIDEGESIEIASFIKLVEVWNSGISFGMCSALPHGGFFFSAFSILIIGILAYLIYKSDDQSTYLGFSLMIGGAIGNVVDRIYWGAVYDFIYFHIDDWYWPAFNLADLSIVCGMFTLLYKWYIYDMLISKQNEE
>NC_021089.1|WP_015589188.1|768607_769927_+|insulinase-family-protein
MRISKFVLLFFFCLSFNLQASGSLNIEEVTTRKGFKFLFVENCALPKVSLNISFKDAGYVYENAEKQGLTWFTSLIIQEGAGKNDAKDFAKKLEDKGISLNFIADLEAFRVSLNTLSDNLEEAISLLSDTIMRPKVDPEGLNRVFEKAKVNFNNLEKSPYFVAGKELDTLLFKKHPYSKSVYGTLDTIMNITRDDVLTYIKRNFAKDNIVISVAGCAKKEEIITLLDKYLSKLPSKRSKVRKIPVKNNFGSAESKNIFMDIPQSVILFAQKGIAYEDPNYYNAGVLIDALGGMRLNSILMTELRQNLGITYGVYASIISNKHGNIISGFISTDSSTAGKAISAVKDTFSRIKKQGIDEQLFKDAKIGLVNNLVLFLSNNTNTATLLDNMQINDRDVNRINNYANIINDVKLEEVNELASSLLEPENLFFVEVGKNAQGQ
>NC_021089.1|WP_015589189.1|769936_770497_-|phosphoribosylglycinamide-formyltransferase
MKKIKLGILISGRGSNMQALIEACQDQNFSAEVACVITNNSEAAGLKIAEQAGISAFIVKDKPLDAGKIHEILVQHKVDLICLAGFMRILKADFLSKWHNKVINIHPSLLPSFKGLNAQEQALKAGVKITGCTVHYVTPEVDAGAIIAQVVVPVLPADDIQSLSERILAKEHKCYVEAVRSIAEDI
>NC_021089.1|WP_006279382.1|770801_771218_+|hypothetical-protein
MSKLPNNAKIGKSQVTQWEVIKNCEYADNCLSKIVTLYVIRITQLSDFYTSDEPEINTVLARISVTSENVFLNKATTIEVMEGIFPYKFNSKKRNNILRLEDLYNYLCSIVNNSLPKEMLESLVREYKDAVNLFKAIT
>NC_021089.1|WP_010962821.1|771210_771741_-|Na+/H+-antiporter-subunit-E
MKNLNFRKEIKFFSLSFIILFVLWTVLSGYFEPFFIFCGVFSSIFTSFIFRRLINAERALSQILNSTSRLSFYKLVSYIPWLMYQIILSSVYVTKKVLQLKSKLEPIIILRKCKGHNDESIALFANSVTITPGTLTINVESKQKTYFSTMYLIDKDLESGISEIENKILKILRSVK
>NC_021089.1|WP_015589190.1|771809_773852_+|ankyrin-repeat-domain-containing-protein
MLKDITTKLCILSEEVMKYGKFMEILNKINDLSDLSKDNIVEKIKAKLQEEDPDLCQEWEKSKPDNDSGSGINYIFTISCGQNSKKVKLLHLASYWNYANVAKALIENGADINAEHDNKITPLHIAAHYGHEDVVTILTGKGAIVDAKNGDGWTSLHFAVEKNHKNVVNTLIGKGANVNAENDKGWAPLHLAITNGHKEIVQVLSKAEGINVDAKNSDGWTSLHLAAANGRKDIVETLIEKGADVNAKDHYKWTPLTFASQKGHEVVKGALLKAQENIKALHSAVKHNNEEEVKNLLNKGVNVNAKDDDGCTPLHLAAREGHKDVVDILIAKGAKVNAENDDRCTALHLAAENNHIEVVKILVEKADVNAEGIVDETPLHLAAREGHEDIVKTLIKKGAKVNAENDDRCTALHLAAENNHIEVVKILVEKADVNIKDADRWTPLHVAAENGHEDIVKTLIAKGAKVNAKNGDRRTPLHLAAKNGHEDVLKTLIAKGAEVNANNGDRRTPLHLAAENGKIKVVEVLLHTEADPSLKDVDGKTPRDLTKYQGIIQLLEEAEKKQTLKNENKKTPKDLTENKDVMQLPEKKEEKQIGKNAIVKEKEQSAKNAIVKGIIVCFVTAVIVGVALAFATALSVPAIIGLAAGSALIVGAGQYIMSKPKTEMKEVKELVPRETEKALT
>NC_021089.1|WP_007548863.1|773972_774422_+|SsrA-binding-protein-SmpB
MEVIAENRKARFEYFILEEFEAGMVLLSSEVKSLRERKVNISDAYVVEKNSEVWLHNMHIAEYKAANRKNHKPKRERKLLLHKKEINKLIGQIKTAGITVVPLSVYFNDKGFAKTKIAIVKGKKLYDKRATIKQREWDREKSRLSKNNL

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Crispr_ID: NC_021089_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021089_8

767116-767225

Orphan

Consensus_repeat	Method
TATATAAGTGGTATATATACGATATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021089_8

>merge|NC_021089|8|767116-767225|CRISPRCasFinder
TATATAAGTGGTATATATACGATATGCTTATTTCTAAACAAAATGAGGAATAAAATAATTATATTCACATAATGTTGACATCGCTATATAAGTGGTATACATACGATATG

>NC_021089|8|7|767116-767225|CRISPRCasFinder
TATATAAGTGGTATATATACGATATG	CTTATTTCTAAACAAAATGAGGAATAAAATAATTATATTCACATAATGTTGACATCGC
TATATAAGTGGTATACATACGATATG

Protein	Signature genes	Signature genes Name	Protein_function
NC_021089.1\|WP_015589186.1\|761912_762851_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NC_021089.1\|WP_007548863.1\|773972_774422_+\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|235455
NC_021089.1\|WP_012673206.1\|762837_763437_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239313
NC_021089.1\|WP_015589194.1\|779565_780174_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589189.1\|769936_770497_-\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|187714
NC_021089.1\|WP_015589183.1\|758007_759387_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235779
NC_021089.1\|WP_010962821.1\|771210_771741_-\|Na+/H+-antiporter-subunit-E	unknown	unknown	gnl\|CDD\|237159
NC_021089.1\|WP_007550039.1\|764375_765248_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_006279382.1\|770801_771218_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_007550037.1\|765363_765702_-\|glutaredoxin-3	unknown	unknown	gnl\|CDD\|239510
NC_021089.1\|WP_015589184.1\|759389_760310_+\|tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|274042
NC_021089.1\|WP_044471264.1\|756254_756536_-\|transposase	unknown	unknown	gnl\|CDD\|290455
NC_021089.1\|WP_015589193.1\|778121_779561_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_022626339.1\|755621_755873_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_010082493.1\|765762_766695_+\|riboflavin-biosynthesis-protein-RibF	unknown	unknown	gnl\|CDD\|235536
NC_021089.1\|WP_015589191.1\|774428_775220_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|234599
NC_021089.1\|WP_015589182.1\|756905_758015_+\|PQQ-like-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|379140
NC_021089.1\|WP_015589188.1\|768607_769927_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_021089.1\|WP_015589192.1\|775910_777656_+\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NC_021089.1\|WP_015589190.1\|771809_773852_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|222980

Protein	Function_ID	Function_description	E-value
NC_021089.1\|WP_015589186.1\|761912_762851_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.81856e-147
NC_021089.1\|WP_007548863.1\|773972_774422_+\|SsrA-binding-protein-SmpB	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	2.88196e-80
NC_021089.1\|WP_012673206.1\|762837_763437_-\|peroxiredoxin	gnl\|CDD\|239313	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure.	8.00814e-97
NC_021089.1\|WP_015589189.1\|769936_770497_-\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|187714	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART). Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.	1.28404e-94
NC_021089.1\|WP_015589183.1\|758007_759387_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235779	PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.	0
NC_021089.1\|WP_010962821.1\|771210_771741_-\|Na+/H+-antiporter-subunit-E	gnl\|CDD\|237159	PRK12651, PRK12651, Na+/H+ antiporter subunit E.	1.82371e-49
NC_021089.1\|WP_010082493.1\|765762_766695_+\|riboflavin-biosynthesis-protein-RibF	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	9.23812e-114
NC_021089.1\|WP_007550037.1\|765363_765702_-\|glutaredoxin-3	gnl\|CDD\|239510	cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including E. coli GRX1 and GRX3, which are members of this subfamily.	5.10589e-38
NC_021089.1\|WP_015589184.1\|759389_760310_+\|tyrosine-recombinase-XerC	gnl\|CDD\|274042	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerC, one of two closely related chromosomal proteins along with XerD (TIGR02225). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and homologs of XerC on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerC, as some apparent XerC examples score in the gray zone between trusted (450) and noise (410) cutoffs, along with some XerD examples. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	2.6083e-120
NC_021089.1\|WP_044471264.1\|756254_756536_-\|transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	3.65755e-08
NC_021089.1\|WP_015589191.1\|774428_775220_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|234599	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed.	5.43631e-106
NC_021089.1\|WP_015589182.1\|756905_758015_+\|PQQ-like-beta-propeller-repeat-protein	gnl\|CDD\|379140	pfam13360, PQQ_2, PQQ-like domain. This domain contains several repeats of the PQQ repeat.	4.02229e-39
NC_021089.1\|WP_015589188.1\|768607_769927_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	3.83039e-62
NC_021089.1\|WP_015589192.1\|775910_777656_+\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NC_021089.1\|WP_015589190.1\|771809_773852_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|222980	PHA03095, PHA03095, ankyrin-like protein; Provisional.	1.48763e-41

>NC_021089.1|WP_010082493.1|765762_766695_+|riboflavin-biosynthesis-protein-RibF
MKIIYNCEQGIENNIALTFGNFDGIHLGHEFAISTLKKVAQERGLPSAVLTFEPHPSTVLFGRNNFRLIDQEQKKELISSYGIDYLYIINFNRGFSEVSCDDFISEILIDKYGAKHIIVGENCTFGHKRLGNILTLEKYSEIYGYSLTKLEPLTIDGKICSSSSIREYVQRGEIEIANKLLGRPYQVSGVVTKGACRGREIGFPTINIPIEDCMIKPKFGTYYARVTFPDSNPNWLYGVVNIGMRPTFKDLKKPIIEMHIFDFDEDVYSHKVNIQLLKFIRSEKKFHSIEELTKQINYDILKVYRLKANL
>NC_021089.1|WP_007550037.1|765363_765702_-|glutaredoxin-3
MKNVVIYVKKGCPYCIRAKDLLDKKGVKYEEIDVLKNSDLFNDIKSKYNVRTVPQIFINDKHIGGCDKLMDLEKEGKLDDMLNNNDNHTDVTTYTNSNDECGECVIPHDDFM
>NC_021089.1|WP_007550039.1|764375_765248_-|hypothetical-protein
MTKNISIISRNLISIELVNKQDLENFIKIFTVLDKHIAAKTLFTEEVRIEYKQHNGIEVVELLKDTDFTYHEVENVLNHLSKHGMKVPSSVIAHTLFAAYNHALEFKDVAFSFSEGSPQFNIRVSKNTFIITPMSEENLELNSQSSKKLIESLQSEKNIYDCIVEENTIKVIVHSEIHQAINLIIKSLIKSRLLAKEEEGKFKEKLRQLAFKDQAFVEYSSIKTISRYPHNHPLRKHESVTKDIENILCDFIANENSEFAIERLNRLSSAVSPDTPRIITKTIDKLVKFH
>NC_021089.1|WP_012673206.1|762837_763437_-|peroxiredoxin
MNLVTKSAIDFTASSVLSDGEIVDDFCLSKRIKNKYAVLFFYPLDFTFVCPTELISLNNRINEFAKRGVEVIGISVDSKFSHYKWRNTPVNDGGIGEISYTLVSDIKKSISRDYGVLYDDSIALRATFVIDDKFIVRHQSINDLPLGRNIDEFVRIVDAIKHNEEHGEVCPAGWKKGKPAMQASDEGVADYLNSYSEEL
>NC_021089.1|WP_015589186.1|761912_762851_-|thioredoxin-disulfide-reductase
MKNYKFSTKVLIIGSGAAGYAAAIYAARANLEPIVVTGMQPGGQLTITTDVENYPGFVSIQGPELMEQMRLHAEKVGAKIIDDEIKSVEQLEDSNEYRFRSSGNINDYYSDAIIIASGAQAKWLGLESEKKFQGYGVSACATCDGAFFRNKVVAVIGGGNTAVEEAIFLTRFAKEVILIHRRDKLRAEKVMQDRLFKNDKIKVMWNHTVEQILGEENPKRVAGIAIKSAETQELKVDGVFIAIGHAPNTGIFKGFVEMDEQGYIITKPGTTLTSRAGVFAAGDVQDKVYRQAVVAAGTGCMAALDAEKFLES
>NC_021089.1|WP_015589184.1|759389_760310_+|tyrosine-recombinase-XerC
MDLGSIIEKWYEWLRCNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLKNLSIPELRSWLTSRYARGVNARSNTRALSVIRNFFKYIKNNHNIDNEAVFSLSRPIQRRTLPKALSIPNIKTLLKEMKLSDLGEPWVVKREIAIIVLLYGTGLRISEALNLRVSDISSENLIITGKGDKQRQVFILPVVKKCIQEYIKACPYLDEAQHLFLGVRGKKLGRTYVANRLQKIRRMLNLPEILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTHLNYQDVFNMYKNFQQGLEKKSKL
>NC_021089.1|WP_015589183.1|758007_759387_+|dihydrolipoyl-dehydrogenase
MTDYDLIVIGGGPGGYKCAIAAAKLGLKVACIDKNSIFGGTCLRVGCIPSKALLHSSYQYAHTKNDLSKLGIKIKDASFDLKEMLGYKDARVQELGKGIEYLFNLHKITKINGLASFDQGNLEVSVEGKVLKTKNIVIATGSDVISLPGINIDEKDIISSTGALSLTEVPKKLVVIGAGAIGLEMSSVWRRLGSEVTVVEFFDRIAAAMDGELSKSLLSSLQKQGIKFLLSTKVEEIKQSSNSLSVKVCSVKDNQTNVIEADKVLVAAGRKPCTENLGIDEKIEKDNRGFVQVNNRYETNVKGIFAIGDVIGGAMLAHKAEEEGVAVAEIIAGQVPHVDYEIIPSVIYTHPAVSSIGKTEEELKSVGRKYKVGKCQFAANGRAKITDDAEGFVKVLTCSRADTILGVHIIGAYADTLINEAAVAMAYGAAAEDIYRICHSHPDINEAFRDACIDAFFKK
>NC_021089.1|WP_015589182.1|756905_758015_+|PQQ-like-beta-propeller-repeat-protein
MKVIIVMIMLLCSSYTMASERISLVDKKLSQGYVAPVLIENSVILSDKHGALYSFDIDNSKAMNWKLHLSHRKKIGNMSLSHYEKNVFFIVDNTLHAIGAKTGKIEWEKELRAPVRGKAAVINNKLVVLTIDNYLYVFDIKDGSFVWTYQNGINEVRGLYSISPAISNDKIIAPFSNGELIAFNEDGKKLWSQKLATNLLDTQLTDVTTTPRVLGDTLIATNNSYIYSIDVKSGNILWSKSLQVKSVSDIESYYSPLIPAEKQKEGGRIFIVTKDDKIIGLDIKNGETVWTSDLIENTQLFAPIMHAHTLWVTSNKGSMFAFPGSESAGKVVKVPGNVFHTPVFTRNKIYVTTEGKGVYSLENRFVFYD
>NC_021089.1|WP_044471264.1|756254_756536_-|transposase
MRVSNCHEYNKFLEKRGNIFRYIDKAIENWYENSPKMQGGNYIYSDKVVILVHIIVNLFRIGLRQTVGFIKGYLQQIGRDLAVISYSQASKKT
>NC_021089.1|WP_022626339.1|755621_755873_-|hypothetical-protein
MAERNAAIRLIKSYSEDGMKRWKRQTNYGKRSYVESFFSRLKQTFGFNFRNKSEINRGKELLLKCYLLNQFTDIGMAKFEMAT
>NC_021089.1|WP_015589188.1|768607_769927_+|insulinase-family-protein
MRISKFVLLFFFCLSFNLQASGSLNIEEVTTRKGFKFLFVENCALPKVSLNISFKDAGYVYENAEKQGLTWFTSLIIQEGAGKNDAKDFAKKLEDKGISLNFIADLEAFRVSLNTLSDNLEEAISLLSDTIMRPKVDPEGLNRVFEKAKVNFNNLEKSPYFVAGKELDTLLFKKHPYSKSVYGTLDTIMNITRDDVLTYIKRNFAKDNIVISVAGCAKKEEIITLLDKYLSKLPSKRSKVRKIPVKNNFGSAESKNIFMDIPQSVILFAQKGIAYEDPNYYNAGVLIDALGGMRLNSILMTELRQNLGITYGVYASIISNKHGNIISGFISTDSSTAGKAISAVKDTFSRIKKQGIDEQLFKDAKIGLVNNLVLFLSNNTNTATLLDNMQINDRDVNRINNYANIINDVKLEEVNELASSLLEPENLFFVEVGKNAQGQ
>NC_021089.1|WP_015589189.1|769936_770497_-|phosphoribosylglycinamide-formyltransferase
MKKIKLGILISGRGSNMQALIEACQDQNFSAEVACVITNNSEAAGLKIAEQAGISAFIVKDKPLDAGKIHEILVQHKVDLICLAGFMRILKADFLSKWHNKVINIHPSLLPSFKGLNAQEQALKAGVKITGCTVHYVTPEVDAGAIIAQVVVPVLPADDIQSLSERILAKEHKCYVEAVRSIAEDI
>NC_021089.1|WP_006279382.1|770801_771218_+|hypothetical-protein
MSKLPNNAKIGKSQVTQWEVIKNCEYADNCLSKIVTLYVIRITQLSDFYTSDEPEINTVLARISVTSENVFLNKATTIEVMEGIFPYKFNSKKRNNILRLEDLYNYLCSIVNNSLPKEMLESLVREYKDAVNLFKAIT
>NC_021089.1|WP_010962821.1|771210_771741_-|Na+/H+-antiporter-subunit-E
MKNLNFRKEIKFFSLSFIILFVLWTVLSGYFEPFFIFCGVFSSIFTSFIFRRLINAERALSQILNSTSRLSFYKLVSYIPWLMYQIILSSVYVTKKVLQLKSKLEPIIILRKCKGHNDESIALFANSVTITPGTLTINVESKQKTYFSTMYLIDKDLESGISEIENKILKILRSVK
>NC_021089.1|WP_015589190.1|771809_773852_+|ankyrin-repeat-domain-containing-protein
MLKDITTKLCILSEEVMKYGKFMEILNKINDLSDLSKDNIVEKIKAKLQEEDPDLCQEWEKSKPDNDSGSGINYIFTISCGQNSKKVKLLHLASYWNYANVAKALIENGADINAEHDNKITPLHIAAHYGHEDVVTILTGKGAIVDAKNGDGWTSLHFAVEKNHKNVVNTLIGKGANVNAENDKGWAPLHLAITNGHKEIVQVLSKAEGINVDAKNSDGWTSLHLAAANGRKDIVETLIEKGADVNAKDHYKWTPLTFASQKGHEVVKGALLKAQENIKALHSAVKHNNEEEVKNLLNKGVNVNAKDDDGCTPLHLAAREGHKDVVDILIAKGAKVNAENDDRCTALHLAAENNHIEVVKILVEKADVNAEGIVDETPLHLAAREGHEDIVKTLIKKGAKVNAENDDRCTALHLAAENNHIEVVKILVEKADVNIKDADRWTPLHVAAENGHEDIVKTLIAKGAKVNAKNGDRRTPLHLAAKNGHEDVLKTLIAKGAEVNANNGDRRTPLHLAAENGKIKVVEVLLHTEADPSLKDVDGKTPRDLTKYQGIIQLLEEAEKKQTLKNENKKTPKDLTENKDVMQLPEKKEEKQIGKNAIVKEKEQSAKNAIVKGIIVCFVTAVIVGVALAFATALSVPAIIGLAAGSALIVGAGQYIMSKPKTEMKEVKELVPRETEKALT
>NC_021089.1|WP_007548863.1|773972_774422_+|SsrA-binding-protein-SmpB
MEVIAENRKARFEYFILEEFEAGMVLLSSEVKSLRERKVNISDAYVVEKNSEVWLHNMHIAEYKAANRKNHKPKRERKLLLHKKEINKLIGQIKTAGITVVPLSVYFNDKGFAKTKIAIVKGKKLYDKRATIKQREWDREKSRLSKNNL
>NC_021089.1|WP_015589191.1|774428_775220_+|prolipoprotein-diacylglyceryl-transferase
MSLNPVIFSIGPVSIYWYSLAYVLGIVFAYWYLHRLDDQKIFTKNFYDSLLTATIIGIILGGRLGYVLIYDPVLYISNPIEILKTWEGGMSFHGGAIGVLLAVIISCRRHNIPIFYALDLVSCGVPIGLFLGRIGNFINGELFGRVTTMPWGMVFPESGDNLLHHPSQLYEALFEGLLLFAVANSLFFLTRIRLYHGALTGIAVMWYGIARFFVEFFREPDYQIGYLWLDLTMGQLLSIPMVLLGMLVYLGALNLKFNTKSVT
>NC_021089.1|WP_015589192.1|775910_777656_+|type-I-secretion-system-permease/ATPase
MEITPSIKKELKQSTLYVCLEKCKSAFWFIFWFSAGINLLMLFLPLYTSQVLDRVISSESVSTLTMLTIITLSAFACSAMLETCRYLAMAKIGDWIDKTATPDLIVRSIRLTSVQSSTSSGEAIRDLGVIKNFITGNGIFSLFDTPWSLIYLVVIFMIHTSTGFIAITGIIILVSMAIWNELATKRILQETNEETIRNINAIDVATRNAEVVEAMGMSEFIVSDWCKRNDQNRAMQIKAQNRSNVITGITKFLRSTLQISVIGTGALLAITAHKTAGSIIAASILMGRVLAPFDAAVHTWKFLNQARMSYGRLQRLILTSPKREQTMALPEPEGKLEFDRVFFTPYGSNKPTVKGISFIIDPGDVVGVIGASASGKSTIAKLTVGVWKPISGVVRLDGADVYTWNRENFGNYVGYLPQDIELFNTSVKANIARMRPDPNPEEIIKAAKIAGIHELILSLPNGYDTTIGGPGGVTLSGGQKQLLGLARAFYGHTKLLVLDEPNANLDSNGEACLINAIGIARKQNTTTVIITHKLPLLSVVDKVILMSDGVIYAMGPKDEILSKLVAPSSSTTEDERSSANG
>NC_021089.1|WP_015589193.1|778121_779561_+|hypothetical-protein
MFSSKSKSKFMLSIGEEGIMLLYFKNNTLNKRYFVKGKNDKAVSDLISCLSSDKKAPLYLVLNHADQNYSLQFITRANKISAYLSAKTKMEHFSRNNDISSVFLVEKPNKFNQNWCYLLVSSKAKHLVEYWLNVFIEIGSNFKGILMFPIEISNITKKILHKDPNNWKIIVAATKTGGYRQVVLKENKMVFTRLTSFTNDNLPGIIAGGIYQEVQDTIRSLTKFGFEKNNPIDLCIIVSEDIKASLSVINFSENSVNILTPYELGKLLGAELAISEKDNFCDTIILFHSFKNKLAAIFNTKETKEFYLFNYLYLNSPRIFLYFALVLVITNTLCLLNLYSNFNVADNLSAKQNTLNNQLTKLSQSYNVKKIDEIYDFININNILSKIEYSPLTQVKYVEKLKIPGIELRSFEWNYNEAKSYITTTLKFNFQSGKNISHQYEKLRKNLNDNFRTYDINISSLPAAKEQNLSIDVEIGEAM
>NC_021089.1|WP_015589194.1|779565_780174_+|hypothetical-protein
MTISQLKRKATIQFISYLLLSVGLIGLLTYVVIYNEKIYNKNQIAIDKIRSINLQITGIQKKEVVLNKNLDLWKKISSSNLHSSRYIANLNFELSKLYKKHYILEPEISISIPEEVELHNKSERTKVIKSEVVLNLSSISDKHIFLFLQSIPNLPGYVMIKSLILNKQRNIDAATMNQILNGNMIEIVRANIVFDWYTILSR

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Crispr_ID: NC_021089_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021089_9

825573-825677

Unclear

Consensus_repeat	Method
TCGTCATCCCGCTACTTGTTAGCGG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NC_021089_9

>merge|NC_021089|9|825573-825677|CRISPRCasFinder
TCGTCATCCCGCTACTTGTTAGCGGCTAAGAGATACCGCGAATGAATCGCGGTATGACGGTGTAATGACGGTTAAGTAATTCGTCATCCCGCTGCTTGTTAGCGG

>NC_021089|9|8|825573-825677|CRISPRCasFinder
TCGTCATCCCGCTACTTGTTAGCGG	CTAAGAGATACCGCGAATGAATCGCGGTATGACGGTGTAATGACGGTTAAGTAAT
TCGTCATCCCGCTGCTTGTTAGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_021089.1\|WP_007549783.1\|825831_826119_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589225.1\|832946_834440_+\|DegQ-family-serine-endoprotease	unknown	unknown	gnl\|CDD\|273938
NC_021089.1\|WP_015589216.1\|819696_820284_-\|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|376519
NC_021089.1\|WP_015589221.1\|826793_827129_-\|divalent-cation-tolerance-protein-CutA	unknown	unknown	gnl\|CDD\|376987
NC_021089.1\|WP_015589217.1\|820402_820873_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589224.1\|832070_832943_+\|protease-modulator-HflC	unknown	unknown	gnl\|CDD\|259803
NC_021089.1\|WP_015589223.1\|830735_830951_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589214.1\|817989_818784_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_007549151.1\|815057_815414_+\|holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|237780
NC_021089.1\|WP_015589218.1\|820948_821833_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NC_021089.1\|WP_010962863.1\|826134_826710_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_174517030.1\|827456_828074_-\|transposase	unknown	unknown	gnl\|CDD\|376573
NC_021089.1\|WP_041573531.1\|815774_817271_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|235835
NC_021089.1\|WP_015589219.1\|821829_822660_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_006279849.1\|831033_832068_+\|FtsH-protease-activity-modulator-HflK	unknown	unknown	gnl\|CDD\|259802
NC_021089.1\|WP_141456678.1\|828075_828405_-\|transposase	unknown	unknown	gnl\|CDD\|290455
NC_021089.1\|WP_015589220.1\|822956_824978_+\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
NC_021089.1\|WP_015589213.1\|817267_817921_-\|type-IV-secretion-system-protein-VirB8	unknown	unknown	gnl\|CDD\|226259
NC_021089.1\|WP_081600785.1\|834566_834671_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131744
NC_021089.1\|WP_015589215.1\|818857_819679_-\|DNA-polymerase-III,-delta'-subunit	unknown	unknown	gnl\|CDD\|273213

Protein	Function_ID	Function_description	E-value
NC_021089.1\|WP_015589225.1\|832946_834440_+\|DegQ-family-serine-endoprotease	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NC_021089.1\|WP_015589216.1\|819696_820284_-\|threonylcarbamoyl-AMP-synthase	gnl\|CDD\|376519	pfam01300, Sua5_yciO_yrdC, Telomere recombination. This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.	5.27387e-58
NC_021089.1\|WP_015589224.1\|832070_832943_+\|protease-modulator-HflC	gnl\|CDD\|259803	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflC (High frequency of lysogenization C). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another SPFH superfamily member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	5.11693e-112
NC_021089.1\|WP_007549151.1\|815057_815414_+\|holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|237780	PRK14659, acpS, holo-[acyl-carrier-protein] synthase.	1.67744e-70
NC_021089.1\|WP_015589218.1\|820948_821833_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	7.52501e-99
NC_021089.1\|WP_015589221.1\|826793_827129_-\|divalent-cation-tolerance-protein-CutA	gnl\|CDD\|376987	pfam03091, CutA1, CutA1 divalent ion tolerance protein. Several gene loci with a possible involvement in cellular tolerance to copper have been identified. One such locus in eubacteria and archaebacteria, cutA, is thought to be involved in cellular tolerance to a wide variety of divalent cations other than copper. The cutA locus consists of two operons, of one and two genes. The CutA1 protein is a cytoplasmic protein, encoded by the single-gene operon and has been linked to divalent cation tolerance. It has no recognized structural motifs. This family also contains putative proteins from eukaryotes (human and Drosophila).	2.66512e-36
NC_021089.1\|WP_174517030.1\|827456_828074_-\|transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	2.31818e-12
NC_021089.1\|WP_041573531.1\|815774_817271_+\|cation:proton-antiporter	gnl\|CDD\|235835	PRK06589, PRK06589, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NC_021089.1\|WP_006279849.1\|831033_832068_+\|FtsH-protease-activity-modulator-HflK	gnl\|CDD\|259802	cd03404, SPFH_HflK, High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflK (High frequency of lysogenization K). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another SPFH superfamily member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	8.35893e-132
NC_021089.1\|WP_015589215.1\|818857_819679_-\|DNA-polymerase-III,-delta'-subunit	gnl\|CDD\|273213	TIGR00678, DNA_polymerase_III_subunit_delta', DNA polymerase III, delta' subunit. This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair].	6.61489e-35
NC_021089.1\|WP_015589220.1\|822956_824978_+\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NC_021089.1\|WP_015589213.1\|817267_817921_-\|type-IV-secretion-system-protein-VirB8	gnl\|CDD\|226259	COG3736, VirB8, Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion].	2.36272e-13
NC_021089.1\|WP_081600785.1\|834566_834671_+\|hypothetical-protein	gnl\|CDD\|131744	TIGR02697, hypothetical_protein_WD_0725, Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode. [Mobile and extrachromosomal element functions, Other].	8.78883e-10
NC_021089.1\|WP_141456678.1\|828075_828405_-\|transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	3.64684e-11

>NC_021089.1|WP_015589220.1|822956_824978_+|ATP-dependent-DNA-helicase-RecG
MSNQIFLNSRLENIPKFHSAILPKLCGGDKVVDLLFYKPLSYVDRSKLLSDARVGEFTTFIAKVYEHQSPTFRGRPYKIVVESESQYIFIVFFNYSVKYLYKLFPIGANVIISGKLEKFAEHWQITHPDYVSLDINQFKKIACIEPVYQLCRGITNKRIGNIISSNLKELPDLPEWIDDTLIKQKKWLSWRESIIKLHRPSSLVEAEVCRKRLAYDELFAYQLALKLARKNHVKERGREFIILSKYKEQVLNELSFQLTNDQTRAIDEISERQKSKYRMISLLQGDVGSGKTVVALFAMINVVENNMQAALMAPTTILAEQHYNWIEEVLSCTDIKVALLTGKTSRKERKIIMNELASGVLNIVIGTHALFQANVTFKNLGLAVIDEQQRFGVMQRNRLVGKGENADILFVTATPIPRTLQQAMYGDVECSILKEKPKSRLPIKTVTMNISRVPDVIEKLKGAINRGEKAYWICPYIEENEETNIAAAEMRFQELQKTFLDKVGIIHGKLTQEQKDQVMFSFKRNEFSLLVATTVIEVGIDVPDATIMIIENAEQFGLSQLHQLRGRVGRGNKPSFCVLLYDNLSKSSSSKLKIMCESQDGFYIAERDMMLRGSGDILGTKQSGCMEFKFADLYQDKELLNLAYNNAKGAMADFELLLDIFEYRSRLHFSKFQ
>NC_021089.1|WP_015589219.1|821829_822660_-|hypothetical-protein
MSSSISEEKENPVVTLRAQAEKFGFSKLRAGKDNAEANSGNTAFLDFQRMDFVINGKSISRDLIAELYKEHDSLLPKSEGKNEDYRPFARKVFKEMFKYAKAEVPSDSILEELVINCNQAGYEAGVHIEFQGALSQHSFIIERPEKVISIDCVSQNNVSVKSDMTLPIFFQRSDGTFGDKVCDLSSSLEFTLKSQDDKNVTYTNGNLSLTVPERLKDYNIGDKSLFDIIKEYFQKLCERLGFFKIKIEHGLGDPLEVSDHLENMEPPIRSNEHGLN
>NC_021089.1|WP_015589218.1|820948_821833_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MKNNIVIITGITASGKSELCDNLIEKYGNISIINCDSKQVYEEIPIITAQPPKQEVFYKLYGYVSAKENYSVGLWLEDLEKEVNHALENAQIPIITGGSGLYISSLIKGLSSMPQISQKVRKNVSELRKNLSKEEFYKLALSKDPRIQGKVFMNDSHRLSRTLEVITETGKSIFVWQENRQPPLFNNFKIYTILPKREDVYRKINSRFITMIENGAIDEVKKLLSMNLAPHLPAMKAHGVPEIIKYLKGEITLDEAIQIAQTNTRHYAKRQYTWFKKQFLNAEVIDCANKLKIF
>NC_021089.1|WP_015589217.1|820402_820873_-|hypothetical-protein
MAENNDNNSFTKRFTNRTPGGTGEGFSSKYSSQNTKERALGEKGKISELAGKKTESKEAFSESGGIKSKSRTVNERSFADATKRSRSDLVYLVRGKDRGKSAWHYVLVDKEKREMFLAKSRTGSIDVADYGEILYSGWGEDPPQAIIDKVNEEFGL
>NC_021089.1|WP_015589216.1|819696_820284_-|threonylcarbamoyl-AMP-synthase
MVSKIINAIQNNLLVCFPTETVYALACNALDNESIGKIYQIKKRSQNKPLSIFVSDIYNLTKIAKVKERYIDLINHFSPGPITYILPLKNNNILPNEFFKDSIGIRIPEHPIAILILNKLKVPIVATSINISGEKSVCKADDIPQSIKQHLSAVIEDDELVSGIESTIIDLTEDKIKVLREGAILLQTVNNAFSN
>NC_021089.1|WP_015589215.1|818857_819679_-|DNA-polymerase-III,-delta'-subunit
MKKVIGHNQAKKKLMNNLSVQSWLICGKKGIGKATLAKSFSNWLLIKSYNEVALDLHIVEGDTIGIEKVREMKNFLHLSPIQSEHKIAIIDSLEAMTNNAKNAILKILEEPPKNSKIFIISHKPYDIQTTILCRCFQLNLLPLTYDETKQVVSSQCKFDDQIFDEIITLFPGMPGMIINAISSDAYEAYKYFYKFLHDLKNPNMINKVINSEIELELASYIIQAFILESIKREVNDVEILLSQWKKIDELFVVAKQLHLDKKHVLANVVNIMT
>NC_021089.1|WP_015589214.1|817989_818784_-|hypothetical-protein
MTDNKLTVWQSIEVLTKAILNMQKELSSIKNIALDQDVTLEKGKELLSGIYEANFKLNKAINIATLPKIGYHMLNGEFVVRNHITEEEVRIPRDFHYLKVVKSDHDNYKLTFCNFLGNEFFEYKKYDPQYSGVSDEYKFVDFGSVKKTHNLKFKEYVGHAPKFFAAEGPIEPGSQNHVIDLFELVKSGKGRKVGTFADEFGYFDDQNKLHYYNYHKSVESNTYDPENFSVKMINIDVSKIDKFYLIAEQGDIIIHPIWENLDIF
>NC_021089.1|WP_015589213.1|817267_817921_-|type-IV-secretion-system-protein-VirB8
MEDKLLESVKNKSYFSKAVEWYCHRYLFCVAERSWMALIVSLLLVCLCLLTLNIYLLFPVKKDLNFVKYMNHTEDEFSAMHKLSFSKKEDEYTSTARYLISKYIEVYESIKTVEPKYQENFIRNNSIHKIHQGFQEKTNNEAVSSKRKITNINVITLSIDRSTKDLVTFAGNATVVFTTEQNKEDTVEISFTLSNIKATLAGIIPFKFIVNGYKYRF
>NC_021089.1|WP_041573531.1|815774_817271_+|cation:proton-antiporter
MDYILMYLSLPFSITENYLLITALIPLLSALVIFFTGKWPGVNNSITVTSSVLLFTYTCLCTLYWVYGDHSQFILMDFGNNLHISLKLESTGVIFSLLISFLWVLTSIYAICYMQNNYADSNHSSFLCFFSISISCAMFIAFSGDLLTTFVFYELLTISTYPLVTYNSTNESMIAGRYYFGVLFFSSLVLFFPAIGLLYNEFHTLDFVSGGIFKFDTSLITFIAVCFAMLIYGIGKAALMPMHFWLPKAMVAPTPVSALLHAVAVVKSGVFIIIKVILYTFGIGNMQRFAQQSWFAGGWLPYAAGFTIITASLIALKQKELKKLLAYSTISQLSYIILFASIFSELSMRVAIFQLVCHAFAKITLFFVAGAIITRAGEKYIDKIYGIGRSMPISMTAFAIGALSMIGVPPAPTFWGKFLIFQAVFNSGNVILSVFVTLVLIVSTILNALYFLPIIYNAFFLKPSQNYFIKKTPILLVLPPVITATCTLVIFFSYQVIF
>NC_021089.1|WP_007549151.1|815057_815414_+|holo-[acyl-carrier-protein]-synthase
MIHGIGTDIVYIPRVSRILQKYGEKFLNRIYTEKEIELSRKYNSQEMRARYFAKRFAAKEAFVKARGSGQGIIMKDIEIYNDVRGKPYLTVSKDFISKIHLSLSDDGDYATAFVVICV
>NC_021089.1|WP_007549783.1|825831_826119_+|hypothetical-protein
MSNNFNFKEFFNHYETNSTSDDIQRYYLLWKSVIAQAMIDAASHCKKTESLVEKRKAISWLSDFSQDFVHTCILADCDPVYVKNKIQPTLKSLTR
>NC_021089.1|WP_010962863.1|826134_826710_-|hypothetical-protein
MISLFYKLRLLNYILGSLKDIIVKLFLFTMYLYTFSIVLMFLSNGFWYAVEFCSFKNAFYRLFQYCKWYYENREDLGYGISIRILVAFLTPHFLYKLLLGTGWKSFLKEKIIQILNTRRKKGSEFSNSSKPSGSSYSDKNNYSNNSGNNERQAQDAKRKVNMIKQLLIKDIEATIDRRLNYIFFGKRSKPH
>NC_021089.1|WP_015589221.1|826793_827129_-|divalent-cation-tolerance-protein-CutA
MSSLVLIYTTFSNFEEAKTISEELLNEKLIVCVNIFPEVNSLYLWEGKISNSCEVVAIMKSKNDQVDKIVEKIEAMHSYDQPAIAVMPIEKANKSFTNWANSVIDVSSIGV
>NC_021089.1|WP_174517030.1|827456_828074_-|transposase
MEDIEIAIDSTGISIYNNTPGHSKENSTDRKYRGYEQTRKLHVMLNINNKKAIAVKYSNGVYSDHYGACDLLKEVDFQHAIKALYADRACDRHKFYKLCNEYDIKTKIPPINNAAEHPEIDYMSDRNAAIRLIKLYGEDGMKEWKKEVNYGKRSYIEGFFSRLKQIFGFSFRNKSEINREKELLIKCYLLNKFTDIGMAKFEIVT
>NC_021089.1|WP_141456678.1|828075_828405_-|transposase
MPQKMRVSNCHEYNKFLQERGSIFCYINDAIENWYENCPKMQGGNYIYSDKVVILVHIIVSFFRIGLRQTVGFIKGYLQQIGRDLAVISYSQASRRFKKLNIKINDCRK
>NC_021089.1|WP_015589223.1|830735_830951_+|hypothetical-protein
MKYRKRTLIFLAVITLIIIALLFRYNSHFHKDVVHLKSDNKEFKKKPENSIESTILHREKEVYNHVFHPDD
>NC_021089.1|WP_006279849.1|831033_832068_+|FtsH-protease-activity-modulator-HflK
MFDDNNPWNLGKKPVGNKTPNNEDILSKAVSDIRFFLNGLTRNRGKKPYFIIFIILLFYACTGFYIVHPSEESIELTFGKYSNTETPGLRYHFPYPIGKVFKVNVKEVNREEIGVSSSYGRDTDRGEGVMLTGDENIVNVNFEVQWRVRDAKDYLFKVRDYKPGFSVKNAAESAMREIIGKNTISFALGQGRPEISRDTRILLQQILDGYQMGIEILSVQMKKIDPPEKVISSFRDVQSARADKERTINEAYAYNNDIIPRAKGEAIKIKLDAQAYENEVINEAKGNANRFLSLYEEYRQNPSLVKNRIYLETMENIFSKVDKVVVTDDLKGMFSYLPLTNLGK
>NC_021089.1|WP_015589224.1|832070_832943_+|protease-modulator-HflC
MSSNIKIVFVSVFVVLLIALSNSIFVVQETKQAIVIQLGKVVRDVRESGLYFKLPFINSVEFLDKRVLDLSPDKTPREVITADQKRIIVDAYAKYKITNPITFYQAVRNESGLVRRLYPVIEAHIRENIGRFSLISLLNEKRSEVMQLIQRGVYSEAEKFGIEIIDVRIKRADLPEENSSAIFRRMQTEREKEAKEIRAEGEQAGQEVRSKADKLKREIISSAVKESYEIRGRGYAEATRIYNEAFKVDEEFFNFYRSMSAYSKSFAENNTKFVLSPNNNFLDILNKGWK
>NC_021089.1|WP_015589225.1|832946_834440_+|DegQ-family-serine-endoprotease
MKSKAFILSIFAYFLIAFSSYANMFDWNAKKVVDASTTACNCNQGLADLVEELIPAVVNISSEQIIKQENNSRTRVPSMPGNNFFDDFREFFEHFDQFFMDRGPSVNKEVVLLGSGFIIDKGGTIVTNYHVIKNAKDITVTMNDNTYFKAEVLGYDARTDLAVLKINSDKDLSSVAFGDSDKARVGDTVMAIGNPFGLGGSVSTGIISARSRDISIGTMNEFIQTDAAINRGNSGGPLFDLNGKVIGINTAIYSPSESGGNVGIGFAIPSNLAMSIIDTLKSGKKIKHGWLGVQVQPITKEFAESLGLKDIKGALVASIVKDSPAEKGGIKVGDILLEFDGKKIDRMTQLPQMVSRAGPEKKVQVKLLRKSKEVNIKVVIGESTNDGQDNNQEENKSTSDYVTGLTVSNLPKESKESKNNVPTKGVIVTNVDSNSNATLRGIKKGDIIIQLDGTDIENTNDFQKQVDSAVKKNGKDSIMLLIYRNGNQFFASIKLKK
>NC_021089.1|WP_081600785.1|834566_834671_+|hypothetical-protein
MPVPRHWKLHCNEHIEQLYNKNWIPVSATCMTPS

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Crispr_ID: NC_021089_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021089_10

850891-851004

Orphan

Consensus_repeat	Method
GAGATACCGCGAATGAATCGCGGTATGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021089_10

>merge|NC_021089|10|850891-851004|CRISPRCasFinder
GAGATACCGCGAATGAATCGCGGTATGACGGTTCGCGGCGGCGTGACGATAAGCTCGTCATCCCGCTACTTGTTAGCGGGATCTAGAGATACCGCGAATGAATCGCGGTATGAC

>NC_021089|10|9|850891-851004|CRISPRCasFinder
GAGATACCGCGAATGAATCGCGGTATGAC	GGTTCGCGGCGGCGTGACGATAAGCTCGTCATCCCGCTACTTGTTAGCGGGATCTA
GAGATACCGCGAATGAATCGCGGTATGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_021089.1\|WP_015589239.1\|858213_859101_-\|aspartate-carbamoyltransferase-catalytic-subunit	unknown	unknown	gnl\|CDD\|234849
NC_021089.1\|WP_015589238.1\|854770_856519_+\|Fe-S-protein-assembly-chaperone-HscA	unknown	unknown	gnl\|CDD\|273915
NC_021089.1\|WP_015589227.1\|838194_838422_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589225.1\|832946_834440_+\|DegQ-family-serine-endoprotease	unknown	unknown	gnl\|CDD\|273938
NC_021089.1\|WP_015589232.1\|845177_847085_-\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NC_021089.1\|WP_015589224.1\|832070_832943_+\|protease-modulator-HflC	unknown	unknown	gnl\|CDD\|259803
NC_021089.1\|WP_179943633.1\|843212_844997_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589233.1\|851094_852438_+\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NC_021089.1\|WP_007548764.1\|863127_863535_-\|transposase	unknown	unknown	gnl\|CDD\|376573
NC_021089.1\|WP_081600786.1\|847480_847777_-\|transposase	unknown	unknown	gnl\|CDD\|290319
NC_021089.1\|WP_015589234.1\|852424_853336_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NC_021089.1\|WP_015589228.1\|838515_839862_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_179943635.1\|848749_848968_+\|transposase	unknown	unknown	gnl\|CDD\|376773
NC_021089.1\|WP_015589237.1\|854334_854793_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|179914
NC_021089.1\|WP_015589240.1\|859321_860347_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270260
NC_021089.1\|WP_010962911.1\|856526_857273_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NC_021089.1\|WP_015589235.1\|853539_853923_+\|Fe-S-cluster-assembly-scaffold-IscU	unknown	unknown	gnl\|CDD\|183087
NC_021089.1\|WP_015589236.1\|853928_854342_+\|iron-sulfur-cluster-assembly-accessory-protein	unknown	unknown	gnl\|CDD\|272875
NC_021089.1\|WP_081600785.1\|834566_834671_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131744
NC_021089.1\|WP_015589227.1\|841660_841888_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_021089.1\|WP_081600785.1\|834566_834671_+\|hypothetical-protein	gnl\|CDD\|131744	TIGR02697, hypothetical_protein_WD_0725, Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode. [Mobile and extrachromosomal element functions, Other].	8.78883e-10
NC_021089.1\|WP_015589238.1\|854770_856519_+\|Fe-S-protein-assembly-chaperone-HscA	gnl\|CDD\|273915	TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. [Protein fate, Protein folding and stabilization].	0
NC_021089.1\|WP_015589239.1\|858213_859101_-\|aspartate-carbamoyltransferase-catalytic-subunit	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	8.40686e-160
NC_021089.1\|WP_015589225.1\|832946_834440_+\|DegQ-family-serine-endoprotease	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NC_021089.1\|WP_015589232.1\|845177_847085_-\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NC_021089.1\|WP_015589237.1\|854334_854793_+\|hypothetical-protein	gnl\|CDD\|179914	PRK05014, hscB, co-chaperone HscB; Provisional.	7.99133e-12
NC_021089.1\|WP_015589233.1\|851094_852438_+\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NC_021089.1\|WP_007548764.1\|863127_863535_-\|transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.6106e-08
NC_021089.1\|WP_081600786.1\|847480_847777_-\|transposase	gnl\|CDD\|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	4.60789e-10
NC_021089.1\|WP_179943635.1\|848749_848968_+\|transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	5.68688e-09
NC_021089.1\|WP_015589224.1\|832070_832943_+\|protease-modulator-HflC	gnl\|CDD\|259803	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflC (High frequency of lysogenization C). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another SPFH superfamily member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	5.11693e-112
NC_021089.1\|WP_015589240.1\|859321_860347_-\|extracellular-solute-binding-protein	gnl\|CDD\|270260	cd13542, PBP2_FutA1_ilke, Substrate binding domain of ferric iron-binding protein, a member of the type 2 periplasmic binding fold superfamily. FutA1 is the periplasmic component of an ABC-type iron transporter and serves as the primary receptor in Synerchosystis species. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria and is critical for survival of these pathogens within the host. After binding iron with high affinity, FutA1 interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The iron- and thiamine-binding proteins belong to the PBPI2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.42444e-134
NC_021089.1\|WP_010962911.1\|856526_857273_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	5.884e-43
NC_021089.1\|WP_015589235.1\|853539_853923_+\|Fe-S-cluster-assembly-scaffold-IscU	gnl\|CDD\|183087	PRK11325, PRK11325, scaffold protein; Provisional.	1.20952e-93
NC_021089.1\|WP_015589236.1\|853928_854342_+\|iron-sulfur-cluster-assembly-accessory-protein	gnl\|CDD\|272875	TIGR00049, Uncharacterized_protein_in_nifU_5'region, Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.07657e-38
NC_021089.1\|WP_015589234.1\|852424_853336_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	8.90311e-164

>NC_021089.1|WP_179943635.1|848749_848968_+|transposase
MTPRQYSSGEVDRHGSISKMGPPECRSMLYEAAQTMLTVTKRTFKLKNWGCEEKRNEKSNCSSSKKISCNYA
>NC_021089.1|WP_081600786.1|847480_847777_-|transposase
MVESAKENLSEVKNILVDAGYTGENFATKIKTIIGATVEVIKRSELHSFAVLPQRWVVERSFAWLEKCRRLWKNCERKLNTSLQMVVLSFISLLLRRF
>NC_021089.1|WP_015589232.1|845177_847085_-|excinuclease-ABC-subunit-UvrB
MEFQIATHFQPAGDQPQAIDSLIAGLNSNKRDQVLLGVTGSGKTFTMANVIARTNRPALIMAHNKTLAAQLYEEMKGLFPHNAVEYFISYYDYYQPEAYLPQTDTYIEKDSAINERIEMLRYSTVCSLLERRDTIVVASVSCIYGLGSPESYRSMIIPLSVGNKIRINDFLSNLTDLQYKRSDARFERGYFRVRGDIIDIFPSHYENKAWRLSLFGDEIEEISEVDAITGNVTKGVNKITIFPNSYYITPREALLQAIELVKKELHERLDYYYSQNKIVEAKRLEQRTNFDIEMMRTTGICKGIENYSRYLYGMEAGDPLPTLFEYLPKDVILFVDESHVTVPQVGAMYSGNEARKKKLIDYGFRLPSAFDNRPLKFEEWEGVRPQTVYISATPGKYELAKTNNVFIEQVIRPTGLTDPICIVKPIESQIDDVIHEAQVTIGKGFCVLITTLTKKMAENLAEYMSELNMRVSYLHSDIAALERIEIIYKLRSKEIDVLVGVNLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNAEGRVILYADKITGSLDRALRETERRRKKQEEHNILHNIIPKTIIKPISNTLQERAIAEPKVNTNKDDLRKQMIEHAKNLEFEEAARIKKLL
>NC_021089.1|WP_179943633.1|843212_844997_+|hypothetical-protein
MPEDSYFLPSTLTSFPRVITPPVHYTISTKPILLTTKNDQKSSSLEFSARSPCLKDVNILGMKSEEHDKSEQGACSQVGVRALEGDQADDESMLIKIQGQQVSYRPSLTPFPTAWNDSMSLNSVASNEEPEKQQVTDESDLESNDECSKAKPQSESPSSRKGSESNSFSGSSTPSKVRQSSILESLENTSFGGIPEHLPQDAVSKPNVPGYRSSKISVDSGLGSLERPQSNSSITTSTVPGISESRKDLNPPVDNKRPQSLPLADFSTCASNETVKAFLCFLDYFSSSEGKKQLPLLLSSEAGKQLSSISDPREQENLLDFLFSTEGNKQLCSLFSSENKQQLHSLFSPKGKELLFSPSPEGQKTIPLVLSPEGKERLPLLLSPEGERISKPFSPEAGNIISLLIYSRVEPKNMSHRSFRDKLAKWLHRNSSLSKVASPQEKPLTNDEKKELRPFLCPKLQKKLDSNSLEDAQLKYLLYTPGGKEKLNLLLSSPEKEGKQLHPGLPSEAEKGLLFKFFDEQEISGNTSTNSKDSGYSGSSSQKSTSDTGSDEDGLEASGGSSVSSNSSTSTVRTKMDATKIEQYLQEKKVNSCT
>NC_021089.1|WP_015589227.1|841660_841888_+|hypothetical-protein
MDKKQQASSSSQGDPRFKVGSGGYDSAAWLKANPREGGGPDMHEGRSRFDDCGKYPYTRMSGTKADKAGSKNKEK
>NC_021089.1|WP_015589228.1|838515_839862_-|hypothetical-protein
MVESFSGNNKGSNFIEEAKIMENFSDNNGNGSSIFQGKIREQDFSAEQKLNELKAAIEELTRQDLLRRLECERQASSCIDEISSQAELHIGQGDDEDYFTGEKGRVLGDFWNFFESLFTLFEVDVDDPKIYQMLKEKKEKNLIAAIMKFLRDKLKELIKKIFARDLSFNQRLDKEIKELQEKLGSGELSEEEFARALERLTALQDLKLRLQMAVVGWIVTMFAEMFGVELAAAVEASTEKEDKKAEKTSLKEENKEVCENVEMKVDEREKPKVPVFLFEISPGFVRPVVLSKPELEIVSDPLKHLLRLTELERKSHENSQKQKVDKEEKKAKPEEQKKEVCPQKPAEKGPIFVEKTGRSSEKSEKKSMNISGQTPTVGSTGEQNMRNSGNASKETVGSIGGQKSSNTGKETIDIDKICGELLAEQDQISPESELNSINVQPKGGYKGK
>NC_021089.1|WP_015589227.1|838194_838422_-|hypothetical-protein
MDKKQQASSSSQGDPRFKVGSGGYDSAAWLKANPREGGGPDMHEGRSRFDDCGKYPYTRMSGTKADKAGSKNKEK
>NC_021089.1|WP_081600785.1|834566_834671_+|hypothetical-protein
MPVPRHWKLHCNEHIEQLYNKNWIPVSATCMTPS
>NC_021089.1|WP_015589225.1|832946_834440_+|DegQ-family-serine-endoprotease
MKSKAFILSIFAYFLIAFSSYANMFDWNAKKVVDASTTACNCNQGLADLVEELIPAVVNISSEQIIKQENNSRTRVPSMPGNNFFDDFREFFEHFDQFFMDRGPSVNKEVVLLGSGFIIDKGGTIVTNYHVIKNAKDITVTMNDNTYFKAEVLGYDARTDLAVLKINSDKDLSSVAFGDSDKARVGDTVMAIGNPFGLGGSVSTGIISARSRDISIGTMNEFIQTDAAINRGNSGGPLFDLNGKVIGINTAIYSPSESGGNVGIGFAIPSNLAMSIIDTLKSGKKIKHGWLGVQVQPITKEFAESLGLKDIKGALVASIVKDSPAEKGGIKVGDILLEFDGKKIDRMTQLPQMVSRAGPEKKVQVKLLRKSKEVNIKVVIGESTNDGQDNNQEENKSTSDYVTGLTVSNLPKESKESKNNVPTKGVIVTNVDSNSNATLRGIKKGDIIIQLDGTDIENTNDFQKQVDSAVKKNGKDSIMLLIYRNGNQFFASIKLKK
>NC_021089.1|WP_015589224.1|832070_832943_+|protease-modulator-HflC
MSSNIKIVFVSVFVVLLIALSNSIFVVQETKQAIVIQLGKVVRDVRESGLYFKLPFINSVEFLDKRVLDLSPDKTPREVITADQKRIIVDAYAKYKITNPITFYQAVRNESGLVRRLYPVIEAHIRENIGRFSLISLLNEKRSEVMQLIQRGVYSEAEKFGIEIIDVRIKRADLPEENSSAIFRRMQTEREKEAKEIRAEGEQAGQEVRSKADKLKREIISSAVKESYEIRGRGYAEATRIYNEAFKVDEEFFNFYRSMSAYSKSFAENNTKFVLSPNNNFLDILNKGWK
>NC_021089.1|WP_015589233.1|851094_852438_+|DNA-repair-protein-RadA
MKTVYVCQSCGHSTGRWVGKCIACDNWDTIVEEIAVKTGKRSISAPILIKTLSGSEIITPSRFLTGIEELDRVFGGGIVQGASILIGGEPGIGKSTLLLRIAANVVQLSSFECLYVSGEESLEQVSLRAKRLKINEPKIKLLSTVSLTDVVATIKENKSIKFLVIDSIQTMYDSRITSAPGTVTQVRTCAHELTILAKQYGVSLLIVGHITKDGQIAGPKTLEHMVDTVLYFEGENSNQCRILRTIKNRFGPANEIGVFEMSEAGLVPVDNPSSLFLMAHDREVVGSAVFAGIEGSRPILMEVQALIAGTNMATPRRAVVGWDINRLAMIIAVLNARCKMFLHDKEVYLNIAGGLKIQEPSADLAVAASLISSVVNLPLPTSSIICGEVALSGEIRNVSHADLRLKEAQKLGFKKAIMPKNGNYSSHDIEIIKLGHVRELREVFNYN
>NC_021089.1|WP_015589234.1|852424_853336_-|signal-recognition-particle-docking-protein-FtsY
MSLFSNLYKGLLKTSSRFSDGVKSIFSGKKKLDQSLLDELEELLISMDIGHKTSKLIIDRLTSIKFDKEVEHNIISQQLMNEIEAILSPVVQPLILNKKPHIIMVCGVNGNGKTTTIGKLAYKYKEMGKSVMLVACDTFRAAASEQLNIWAERSDCLIVTGEYGSDSASVAYRAVSQAIKDNVDVVLIDTAGRLQNNVNLMEELSKIYRTIKKLDDTAPHDVILVLDATTGQNAYSQLEAFSKMVHVTGLIVTKLDGTAKGGVVIGLAEAYKVKLHAIGIGENIEDLREFTSKEFAEALFNCN
>NC_021089.1|WP_015589235.1|853539_853923_+|Fe-S-cluster-assembly-scaffold-IscU
MSYNEKILDHYENPRNVGSLDKNDPNVGTGLVGAPSCGDVMKLQIKVNDKGVIEDAKFKTFGCGSAIASSSLLTEMIKGRTISDLTQIKNTQIVEELSLPPVKIHCSVLAEDAIKAAIHDYQSKQKN
>NC_021089.1|WP_015589236.1|853928_854342_+|iron-sulfur-cluster-assembly-accessory-protein
MSEYQEVGGGETVKKNRKLITITAEAVERIRYLLDQKKHTNLEKPEEAIGIRVLIKQKGCSGLKYDIEYAYDTRPLESIIEENCSDDQKVKVLIDPKSVMFILGSEMDYVEEKFSSGFVFKNPNEKGKCGCGESFHV
>NC_021089.1|WP_015589237.1|854334_854793_+|hypothetical-protein
MSSSYFTLFEIEPTFNISFDELEKKYIELSKTDINERQSQNMENINRAYQILKSPLKRAEHLLDFFDVKSQKDHLNSEILSESMEIREYLLDCDDLQFASRMIDEKIKDCVKNLINTFAIKNFDGAATQVLRLKYLYKSFEEVKKNATNSNF
>NC_021089.1|WP_015589238.1|854770_856519_+|Fe-S-protein-assembly-chaperone-HscA
MQPIQISEPNSSEVIFGIDLGTTNSLIAMVNKAGNVEIFEDEQGRELLPSALSYENNTLKTGYDVGQNAIYSIKRLMGKSVEELNKEGVNFEIDHESEKVIRIKCAEEKYLTPVEISAEILKALCERVKKSKGLEVKKAVITVPAYFDDSARNATKYAAKLAGIEVLRLVNEPTAAALSYSIEKNNSSRIYAVYDLGGGTFDISILKLHQGVFQVLAVGGDTKLGGDDFDHLLSSIVIDKYREKTAKQLNSLLIESRSVKEYLSKNTSGIFEFSINGKPFECEITREEFEQAISSLVNKTINIVTRTISDIDLKIDNIKGVILVGGATRTPLVQNSLVKLFGNKVLNDVDPDKAVAIGAALQAHDLTSSSKDRNILLDVLPLSLGIETMGGIVEKIIPRNTPLPVSETKEFTTYFDGQTAMKIHVCQGEREMIEDNKSLAQFELKGIPPLPAGSARVEIEFTVNVDGILTVTAREKTTGIEQTVEVNSSFGLSEADVQNMVNQSINSFDEDMKARSLAGAKINGNKLIHLVENNNNLSTDQKLKNLLQNAKNALQGNDLNEINNTIAELENSSLELCELTNR
>NC_021089.1|WP_010962911.1|856526_857273_-|signal-peptidase-I
MEELSKNWVIRTGRFLSSLFFLLLIALSIRSFLFEPFHIPSGSMKSTLLEGDYIFTSKYSYGYSKHSFPFSPNIFSGRIFYTPPKRGDIVVFKPTRNDSIRFVKRVIGTPGDKVQMIEGELYLNDQKVERRQIESFFDYESNRNIPRYIETLLSGKEHEILVDDISNKLSYNTPVYYVPNDQFFVMGDNRNNSLDSRFPEVGFVPMENIIGRVSIVGLSFKLGKVDWLPFNFRLPVALRLNRVLHKVV
>NC_021089.1|WP_015589239.1|858213_859101_-|aspartate-carbamoyltransferase-catalytic-subunit
MNKRRNLLNISDLTVDDVENITKLANQYLKKEVANSHILENKTVINLFFEDSTRTLASFEIAAKSLGANVVTLPIRSSSINKGEDLKDMIKTLNAMNPDYIIIRHKSSGIINTLAKYVNCSLINAGDGSSEHPTQALADYLVISNHKKQIKDLKVVICGDILHSRVARSNIRLLKMFGAEINLVAPPTLICKHFPEVDSVHYSLIEGIKDADVIMLLRLQKERMNNSSSEKEYFHLYGLDLQKLSYAKPDAIVMHPGPINRGIEISSDVADCVILQQVEFGLAIRKAVLHYYRPC
>NC_021089.1|WP_015589240.1|859321_860347_-|extracellular-solute-binding-protein
MKKAFIFTSLIAIILIVITYLYRNDGTNDSQVVNVYSSRKEELVRTLFDEFTKNTGIKVRYIIDDYSQLLSRMENGGEADLFLTADAINLILAKKRGLLSQVDSEVLKSVIPARFRDSEDYWFGLTKRARILVYNKESVDPKDLSTYEDLANEKWKGKILVRSSTSPYNRSLIAFMIANNGFEKTKEWVSGIVSNMARKPSGGDTDQIYAVAAGEGDVAIVNSYYFARILSSENKKNVADKLGAFFPNRNDHGVMVNISGAAVTKNAKNRENAIVLLEFLVSKQAQELYAKKNQEYPIIEGVETSDILKSWGNYSQSDLPLSELEKHLFEAVMIADECKCK
>NC_021089.1|WP_007548764.1|863127_863535_-|transposase
MLKEVDFQYVIKVLYADRAYDREKLYKLCNQYGIKTKIPPKNNAAEHPKLDYMAERNSAVKLIKSYDEDGIKKWKKEMSYGKRSYIESFFSRLKQTFGFSFRNKSETNREKELLVKCYLLNKFTDIGMAKFEIAS

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Crispr_ID: NC_021089_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021089_11

945764-945859

Orphan

Consensus_repeat	Method
CTTTATGAGGGTGTCATCCGAGTAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021089_11

>merge|NC_021089|11|945764-945859|CRISPRCasFinder
CTTTATGAGGGTGTCATCCGAGTAGCCCCTTTCTCGTCATCCCGCTACGTGTTAGCGGGATCTCATTTCACTTTATGAGGGTGTCATCCGAATAGC

>NC_021089|11|10|945764-945859|CRISPRCasFinder
CTTTATGAGGGTGTCATCCGAGTAGC	CCCTTTCTCGTCATCCCGCTACGTGTTAGCGGGATCTCATTTCA
CTTTATGAGGGTGTCATCCGAATAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_021089.1\|WP_015589284.1\|940856_941834_-\|quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176189
NC_021089.1\|WP_179943636.1\|939437_939575_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_007549647.1\|948815_949142_+\|transposase	unknown	unknown	gnl\|CDD\|376773
NC_021089.1\|WP_015589288.1\|944243_945008_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|349976
NC_021089.1\|WP_015589286.1\|942904_943441_-\|cytochrome-c-oxidase-assembly-protein	unknown	unknown	gnl\|CDD\|235341
NC_021089.1\|WP_015589283.1\|936160_937774_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589285.1\|941952_942651_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293786
NC_021089.1\|WP_174517030.1\|939890_940508_+\|transposase	unknown	unknown	gnl\|CDD\|376573
NC_021089.1\|WP_007549940.1\|953898_954102_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_021089.1\|WP_010962945.1\|946478_947513_-\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
NC_021089.1\|WP_141456678.1\|939559_939889_+\|transposase	unknown	unknown	gnl\|CDD\|290455
NC_021089.1\|WP_022626388.1\|954295_954517_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589291.1\|950994_952440_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589287.1\|943441_944164_-\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414
NC_021089.1\|WP_015589292.1\|952640_953807_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
NC_021089.1\|WP_015589290.1\|949584_950859_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182613
NC_021089.1\|WP_015589289.1\|947653_948106_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_081600779.1\|949080_949371_+\|transposase	unknown	unknown	gnl\|CDD\|376773
NC_021089.1\|WP_012673308.1\|945100_945595_+\|Smr/MutS-family-protein	unknown	unknown	gnl\|CDD\|225396
NC_021089.1\|WP_007552972.1\|948426_948696_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564

Protein	Function_ID	Function_description	E-value
NC_021089.1\|WP_015589284.1\|940856_941834_-\|quinone-oxidoreductase	gnl\|CDD\|176189	cd05286, QOR2, Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	3.7199e-156
NC_021089.1\|WP_010962945.1\|946478_947513_-\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	0
NC_021089.1\|WP_012673308.1\|945100_945595_+\|Smr/MutS-family-protein	gnl\|CDD\|225396	COG2840, COG2840, Uncharacterized protein conserved in bacteria [Function unknown].	2.91943e-24
NC_021089.1\|WP_015589288.1\|944243_945008_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|349976	cd18103, SpoU-like_RlmB, SAM-dependent rRNA methylase related to RlmB. 23S rRNA-M2G2251-MTase RlmB catalyzes the methylation of guanosine 2251, a modification conserved in the peptidyltransferase domain of 23S rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	1.52605e-66
NC_021089.1\|WP_015589286.1\|942904_943441_-\|cytochrome-c-oxidase-assembly-protein	gnl\|CDD\|235341	PRK05089, PRK05089, cytochrome C oxidase assembly protein; Provisional.	2.59511e-88
NC_021089.1\|WP_015589285.1\|941952_942651_+\|hypothetical-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	0.00366505
NC_021089.1\|WP_174517030.1\|939890_940508_+\|transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	2.31818e-12
NC_021089.1\|WP_007549940.1\|953898_954102_+\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	1.97604e-26
NC_021089.1\|WP_141456678.1\|939559_939889_+\|transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	3.64684e-11
NC_021089.1\|WP_015589287.1\|943441_944164_-\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	1.64516e-66
NC_021089.1\|WP_015589292.1\|952640_953807_+\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	1.90611e-170
NC_021089.1\|WP_015589290.1\|949584_950859_-\|amino-acid-permease	gnl\|CDD\|182613	PRK10644, PRK10644, arginine/agmatine antiporter.	2.95141e-62
NC_021089.1\|WP_081600779.1\|949080_949371_+\|transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	1.72362e-09
NC_021089.1\|WP_007549647.1\|948815_949142_+\|transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	3.42828e-10
NC_021089.1\|WP_007552972.1\|948426_948696_+\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	3.60831e-12

>NC_021089.1|WP_012673308.1|945100_945595_+|Smr/MutS-family-protein
MSDDELDWQKNVKPIKCGKVTLKVDHKVNIKSMVDKGTSDLQGNFLNTNNGNSSFCLDQNTKSKVDRGKYFISDKLDLHGYNIEDAYCKLIDFIIKNYRAGNRCLLVITGYGSATNKTDTIKNNLNKWLNDTKIQHMVLYYQQATKKHGGKGAFYVLLRRLRSY
>NC_021089.1|WP_015589288.1|944243_945008_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MKSSKTNENFWLYGKHTCMSALKNKNRRCIELLVTENFYREHEKEIKQCANSKGIKVRLVENKILNDVLPKGANHQGIALKVAPILHNLSIEEVAESSNDSSTIVILDQVTDTHNIGSILRTSACFNVNALVLPHNHSPSENASIAKAASGALDIVPLIYVTNIVKTMEYLKKVGYWCYGFDCNAKENIDEIKSFEKKRVIIFGSEEKGVRRLVKENCDYLLKIPISNVIDSLNVSNAAAIGLYSIYIKTNASA
>NC_021089.1|WP_015589287.1|943441_944164_-|Bax-inhibitor-1/YccA-family-protein
MSYMRNEQDIRSQGAYYSAGLRSYLTKVYNYMALALGVTGLVAFLTVFSGLFQVIHSNPVLSLVVMLSPVALVFYMSYRIQHLSAQSAVTIFFSFSVLMGLSLSYIFIVYTAENIARAFFITSIMFGSMALYGNTTKRDLTSMGSFLIMGIWGLIIASIVNLFLGSSPLYFAISFISVIVFTLMTAYDAQRIKDVYYKHNDGSEVATTKLAILGATNLYFDFINIFLNLLRLLNLFNNRD
>NC_021089.1|WP_015589286.1|942904_943441_-|cytochrome-c-oxidase-assembly-protein
MFSFLRKGSKNSIVFFLISLVVLMLCLAYASVPLYSIFCKATGYGGTIRKVTNTTTNITNQKIRVHFNADIMSDLPWEFKSETNYVDVNIGEQSLAFYYAKNLSDQPSFGMAVYNVTPFKAGKYFNKVACFCFEEQMLLAKQKAAMPVSFYIDPEIMLDSNTKDLSEITLSYTFFKLK
>NC_021089.1|WP_015589285.1|941952_942651_+|hypothetical-protein
MDRENLLYSVLYNVLYKVDKDNGLDTSNIIKKIKERLESGMRTSSKENYYEYLYASWEKKGFDINHKFDLKDYDGFPVDSLFSIAINNKPHALPNLAQVLIKAGTNVQNEKGYLHACALTRSPDVLKALIEAGVSDSPHEHYGGNTALDCVTELYDAEKSIECKDCCKILIKHTLEKKPHEKMPDSVKNNKELAQYWNACEAKNEGWELITPSTETQVVGAQKANKNSCSIQ
>NC_021089.1|WP_015589284.1|940856_941834_-|quinone-oxidoreductase
MVRAIQIKKTGGPEVLEFVDKNIGEPKGEEVLVRHTTIGLNRYDLEHRKGTRKIKNLPSVLGVEAVGVIEKLGKKISDGLKVGDRVGYCTAPPGAYCEKRIIHQKYLIKIPDDISDEVAAAVLFKGMTAHYLVNQSYKIRPGAFVLVHGANGGLGQIICQWAKDKKGVVIGSVSSDEKMKIALQSGCTYAINYNDKDFVSKIMEITQNRGVGAVYDPIGYATSKLSFESLGRFGIYVSYGQISGNAPISFSLLSSRSLFATGTLIYHYKHDRFTLVLTTMEIFEMIRKKLLTVRINKKYKFDEIIQAHRDMENRKASGLNIIKIS
>NC_021089.1|WP_174517030.1|939890_940508_+|transposase
MEDIEIAIDSTGISIYNNTPGHSKENSTDRKYRGYEQTRKLHVMLNINNKKAIAVKYSNGVYSDHYGACDLLKEVDFQHAIKALYADRACDRHKFYKLCNEYDIKTKIPPINNAAEHPEIDYMSDRNAAIRLIKLYGEDGMKEWKKEVNYGKRSYIEGFFSRLKQIFGFSFRNKSEINREKELLIKCYLLNKFTDIGMAKFEIVT
>NC_021089.1|WP_141456678.1|939559_939889_+|transposase
MPQKMRVSNCHEYNKFLQERGSIFCYINDAIENWYENCPKMQGGNYIYSDKVVILVHIIVSFFRIGLRQTVGFIKGYLQQIGRDLAVISYSQASRRFKKLNIKINDCRK
>NC_021089.1|WP_179943636.1|939437_939575_+|hypothetical-protein
MTPSQGETGFQWALLHRSSEKNWQLLTKFIINSHLTVEEKICHKK
>NC_021089.1|WP_015589283.1|936160_937774_-|hypothetical-protein
MNNPFKSENYKKNLDSLIKAVKLGNAEKQYNKTLRDLSHELEGFTGEAKGIAEFVIYTDLNNYVEQPLGLFKTLMNRILGKNFPTKNSSISNFVNDELSSFTLETAAKYTRILKKIDLLEQLEKDFRKNNILKDSLNLEQSEKSQGKDRSHEVSLEGRKQKEGTFELRKEEQPKEKLGGNRMRQIKRPTTAPPAAPDSRKVRFKSEISSDGESKAKSTSSLLKGANSFSMPDAKENPSEDSGYESSLDQGSEYEDISNYQEKKQKENPLYEQREDSGYGSSLNEESVYKEISNYQEKKSKILIENSQSSKSPKEEPIYATVPKEHIEAKRERKQKQQPQSLVPPKPPQVPKKMFTTGQEVRQESKVVIKDKPAVPPKPKNLSRANQKVSTEPKVVGVILKKSAERVPLESENQDNRKSAQKAAGKAIPKVAAATMKGGANREMGSKVKALKEKFEQNQAKGNANVQLAESKTTPAAQADIGVKKKQSHSFLTENKRSATKHVTAKSDPKSHISKNSLLTHANVKEMVAQIEKGKGGR
>NC_021089.1|WP_010962945.1|946478_947513_-|aspartate-semialdehyde-dehydrogenase
MRYKIAVIGATGRVGREVLSTLAEFQDEAIDCVIALASKKSEGKKVSFGDKELTVLCLEDYDFVGTNVAIFCAGSHVSEEYVPIATQAGCIVIDNSSHFRMKEGVPLIIPEINKEKIMEYKNHNIISNPNCTTIQMLLVLHLLHQKAKIKRIVASTYQSTSGAGKAAMDELYDQTKKIFMNEAKKPKIFSKQIAFNCIPHVGEFMENGSTEEEWKMQEETKKILEEDIKVTATCVRVPVFIGHAMAVNVEFDQHITEEQAREVLSEAEDSGVLVYNRREDSEYITQIDVVQENAVYVSRIRRDNTVEHGLNMWIVADNLRKGAALNIVQILEILIREHLSIKCI
>NC_021089.1|WP_015589289.1|947653_948106_+|hypothetical-protein
MSKEYDETKVKPAMSTPQGPEGTNGSKAQSVLSNKRKPTINFDDKKYGVKTSKIDQQSLNKRQESSKLRDLLRSIPIIRRFLARIFTPEKIEIISNPIYDNMEAYKKSQEDYPSKIKDETSIDDEHTKEVDSKLEKGNVEQVDNKKSRSS
>NC_021089.1|WP_007552972.1|948426_948696_+|IS110-family-transposase
MQVNAILGVDISKKKFDVCLLVDSKKRHKVFQNNQDGFAKLVVWCNGHGANLTHLCLEATSWYGEDLATFMHDLGHNVSIVNPESFWQK
>NC_021089.1|WP_007549647.1|948815_949142_+|transposase
MQSLKDDKVQQTNRLENKNMHSSCKEAISKVILAIEEQIIVLEKEINEHINNYPHLKNMVENLKTIKGIGYLTAVAVVAEMPSVDNFDNAKQFTAFAARTLSIGIVSK
>NC_021089.1|WP_081600779.1|949080_949371_+|transposase
MLNNLQLLLPGHYQSGSSVSKRSCICKIGSERIRKALYMPAIVVKNHNNHFQKFCQRLASKGKCPKVIVLALMRKLMHVFFGILKKNQPFNCNFVG
>NC_021089.1|WP_015589290.1|949584_950859_-|amino-acid-permease
MSNKIGFWAIFALVISSQIGSGIFMLPISLAPYGMYSLISWIISGLGAISLALVFASLCAKFPETGGSHVYVKHAFGPAAAFFVGWTYWVISWVSTTAVIVVGVGYLTPFFHEDIQNVHLFLEMLLLTIITLINFRGVATAGRVEFLLTVIKISVLLVIPIAALFFFDRNNFIISEEISNLTTSQILARSTLITLWGFIGVELATAPAGSVDNPARTIPRAVVLGTISVAVVYFINNLAIMGLINGNDLASSRAPYVDAIKIMASGNWHLIISITAFIFCVGTLNAWVLASGQVALGLAKDKLMPQFFAQRNKHGSPFWGITISSVGTSVLLILTSSNNFAKQITSIIDFSVVSFLFVYLACSLAFLKVIVQEKSCYKFLIGSIATTFCCWVIFETSVNTLLIASLFTASGVPLYLFWYRRVSV
>NC_021089.1|WP_015589291.1|950994_952440_+|hypothetical-protein
MNPRLKAFLVVCSIIAFLIALLFLVYYLNLLVNYILDPILVRPFERLYKNLIVDGLYAYLSTSTSSPALAFLATGFIVIAAFICLNKMLLPLQEKIINNYTSFKNNNIDSNSMLFEVYKGPTIKLKDKILFFSIHLIYYLQLPFLYIASKVSALRGFLIFNFGLLLLNYALLIPVALLELIKYPLVRLFSPLGLNVKQLSFLFNVSDVGTGSQSVHTSSFEHSILQCAQELKQKFGAQPNVLNKEFEDYINNSDELTTEQKEQLKLYLNFNGSNEAAWQESKTGLTLTQAANLVSTAAKNQKSDVNSLLLMNLKDGLGLCTLGMFDRIIYSLSCLEAKNNFLVQINGAVNVLTPKFTERFLKEYCNYKKLKILVDKFEDFYSEDYADKNNISDEVKSNINQSIIEIREFVFKELYIKFYEEYGKSIQRGAIKQKLRELVTDDSIKEAVYYSMYNIEIPAEPPTYLERVKAFFGGHARSSAA
>NC_021089.1|WP_015589292.1|952640_953807_+|aspartate-kinase
MDKIIIKKFGGTSLTDLNRVANLIKNDIEKGCNVIVVVSAVAGFTDQMVFQARQISNLSYRQELSEYDVMLSAGEQISCGLLAITLQSIGVNAKSWLAWQLPIATDDFYSESKIKTIKIERVKRSFAEGYTAAIIAGFQGINDDRITTFGRGGSDISAVAFAVAFGVRTCEIFTDIDGIYTADPRIVPKARKLKFISYDEMLEMSSSGAKILHNRSVQLAMKHNIKVQVLSTFKEVEGTTVLHKRDVLERYLITGITYSTNEALVTFTNLANNLRTLRDIAGANVKIDMIHGSSFVISKFDIDSMEKLLNKNENYAINDNVAKISIIGIGVMSNTEVMHRTLKVLSEKKIEILAITTSEIKISIIVQKECAVALVKDLHTEYELDMQH
>NC_021089.1|WP_007549940.1|953898_954102_+|IS5-family-transposase
MYPSDISDKEWEILEPHVAQGKIGRPRKHNIRTIINAIRYIMRGGCQWRMLPKDFPPWKTVYDYFLR
>NC_021089.1|WP_022626388.1|954295_954517_+|hypothetical-protein
MGLIIAADVHSASVQDRDGALNLFTQAKYKAPTLRKFFADQGYIAKPLFIGDRIRLPRKLLMLQDFSTIWTTI

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Crispr_ID: NC_021089_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021089_12

982229-982339

Orphan

Consensus_repeat	Method
GAGATACCGCGGCGGTATGACGGTTCGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021089_12

>merge|NC_021089|12|982229-982339|CRISPRCasFinder
GAGATACCGCGGCGGTATGACGGTTCGCGGTGGTATGACGGTTAAGTAATTCGTCATCCCGCTGCTTGTTAGCGGGATCTAGAGATACCGCGGCGGTATGACGGTTCGCGG

>NC_021089|12|11|982229-982339|CRISPRCasFinder
GAGATACCGCGGCGGTATGACGGTTCGCGG	TGGTATGACGGTTAAGTAATTCGTCATCCCGCTGCTTGTTAGCGGGATCTA
GAGATACCGCGGCGGTATGACGGTTCGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_021089.1\|WP_015589311.1\|977025_978063_-\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NC_021089.1\|WP_015589318.1\|984894_986313_-\|metalloprotease-TldD	unknown	unknown	gnl\|CDD\|182685
NC_021089.1\|WP_015589321.1\|987973_988753_+\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197320
NC_021089.1\|WP_015589315.1\|980972_982136_+\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NC_021089.1\|WP_015589314.1\|979370_980072_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213228
NC_021089.1\|WP_015589320.1\|987266_987974_+\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|119440
NC_021089.1\|WP_095866567.1\|993056_993398_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|379098
NC_021089.1\|WP_081600771.1\|992653_992818_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_021089.1\|WP_041573607.1\|978073_978256_-\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|234901
NC_021089.1\|WP_015589317.1\|983360_984608_-\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
NC_021089.1\|WP_015589322.1\|988789_989812_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589308.1\|972692_974021_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl\|CDD\|235392
NC_021089.1\|WP_015589319.1\|986530_987022_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589309.1\|974324_975341_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223566
NC_021089.1\|WP_015589310.1\|976076_977033_-\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475
NC_021089.1\|WP_015589316.1\|982426_983326_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NC_021089.1\|WP_041573606.1\|971987_972470_-\|NADH-quinone-oxidoreductase-subunit-NuoI	unknown	unknown	gnl\|CDD\|235637
NC_021089.1\|WP_015589313.1\|978595_979378_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376777
NC_021089.1\|WP_007548965.1\|980392_980890_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589323.1\|989862_992439_-\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591

Protein	Function_ID	Function_description	E-value
NC_021089.1\|WP_015589311.1\|977025_978063_-\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	6.27529e-159
NC_021089.1\|WP_015589320.1\|987266_987974_+\|uroporphyrinogen-III-synthase	gnl\|CDD\|119440	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.	1.67221e-44
NC_021089.1\|WP_015589321.1\|987973_988753_+\|exodeoxyribonuclease-III	gnl\|CDD\|197320	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Escherichia coli ExoIII, Neisseria meningitides NExo,and related proteins. These are ExoIII family AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiencies. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For example, Neisseria meningitides Nape and NExo, and exonuclease III (ExoIII) and endonuclease IV (EndoIV) in Escherichia coli. NExo and ExoIII are found in this subfamily. NExo is the non-dominant AP endonuclease. It exhibits strong 3'-5' exonuclease and 3'-deoxyribose phosphodiesterase activities. Escherichia coli ExoIII is an active AP endonuclease, and in addition, it exhibits double strand (ds)-specific 3'-5' exonuclease, exonucleolytic RNase H, 3'-phosphomonoesterase and 3'-phosphodiesterase activities, all catalyzed by a single active site. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes ExoIII and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	2.51223e-126
NC_021089.1\|WP_015589315.1\|980972_982136_+\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NC_021089.1\|WP_015589314.1\|979370_980072_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213228	cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.90745e-100
NC_021089.1\|WP_095866567.1\|993056_993398_-\|IS3-family-transposase	gnl\|CDD\|379098	pfam13276, HTH_21, HTH-like domain. This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.	1.333e-13
NC_021089.1\|WP_081600771.1\|992653_992818_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.09328e-07
NC_021089.1\|WP_015589318.1\|984894_986313_-\|metalloprotease-TldD	gnl\|CDD\|182685	PRK10735, tldD, protease TldD; Provisional.	0
NC_021089.1\|WP_015589317.1\|983360_984608_-\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
NC_021089.1\|WP_015589308.1\|972692_974021_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
NC_021089.1\|WP_015589309.1\|974324_975341_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	7.33901e-68
NC_021089.1\|WP_015589310.1\|976076_977033_-\|ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	1.04154e-180
NC_021089.1\|WP_015589316.1\|982426_983326_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	2.98846e-49
NC_021089.1\|WP_041573606.1\|971987_972470_-\|NADH-quinone-oxidoreductase-subunit-NuoI	gnl\|CDD\|235637	PRK05888, PRK05888, NADH-quinone oxidoreductase subunit NuoI.	4.44254e-91
NC_021089.1\|WP_015589313.1\|978595_979378_+\|ABC-transporter-permease	gnl\|CDD\|376777	pfam02405, MlaE, Permease MlaE. MlaE is a permease which in E. coli is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. In NMB1965 it is involved in L-glutamate import into the cell. In Arabidopsis thaliana TGD1 it is involved in lipid transfer within the cell.	1.80708e-73
NC_021089.1\|WP_041573607.1\|978073_978256_-\|50S-ribosomal-protein-L32	gnl\|CDD\|234901	PRK01110, rpmF, 50S ribosomal protein L32; Validated.	1.37151e-21
NC_021089.1\|WP_015589323.1\|989862_992439_-\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0

>NC_021089.1|WP_015589315.1|980972_982136_+|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MKKVSVLGSTGSVGKKTVDLLSKRKEEYQVEALSAHSNFALLAHQAKLLNAKYVAISDERLYKDLKENLLGTDVKIAIGATNIATIPVDLSVVAIVGIAGLEPVMEVIESGTKVIALANKESIVCGGKLLLKKAKEKNVQIISIDSEHNAIFQILQNDDKCIEKIILTASGGPFLNYSSEQLRNVIVDQALSHPTWNMGKKISIDSATMMNKALEIIEAHNLFNISPDKIEAIVHPESIVHGIVTYKDGFNFAVLAETDMAIPISYALSWPERSALNRKLDLTKQGKLTFQEPDHKRFPALKLSMAVLNSSAPQTNSIVLNAANEIAVNEFLKSRIGFLKIVEVVESTMESFDSYTDINSLSDIINIDCESRIIAHKIVESKVVAYS
>NC_021089.1|WP_007548965.1|980392_980890_+|hypothetical-protein
MSEAQGPNIAEWQAQQQHQEAAGEKSGFGLGHSDSVSTVVDGMKWLFNFHEGAIAAYSNVFEGLVSGSSLVTLFGKSGNMFGIKFLEGLAEYFSGGGGEDMPSEGMDMAHGDDGHHSDDYPHANNEIAHNADGLQDMHDAGDHHGQSFSPGPSPSVGDDHGHELG
>NC_021089.1|WP_015589314.1|979370_980072_+|ATP-binding-cassette-domain-containing-protein
MRNPIISILNLSLSFDDRTVLKDLNFDILKGESLVILGGSGSGKSVLTKTIIGLLAPDSGSVKINSKSKNKFGGLFQNSALFDYVTVWENISFNYKKRFNISKKEAKQLAIEKLNDVGLEESIADMFPIELSGGMKKRVALARAIAHNPEIIILDEPTSGLDPIMSDIVNEIIIKLSRDLNPTIITITHDIHSAFKIADKIAVLYEGEIISHGTVQEIQNTNNEYIKKFIHYI
>NC_021089.1|WP_015589313.1|978595_979378_+|ABC-transporter-permease
MSFFDINSVRIIGRYFINFLLRLGSAFIFFIQSLYHCLVPPYYFSNIARQIIEIGFFSLPIVGLTGVFIGAAIVLQSSLSDPLINQEQIIPKLVTITIIKELGPVLISLIMVGKVGSSVAAEIGTMRITEQIDALTTLNINPFKYLIAPRILASIIVFPILTVCADLIGIFGGCITAVFEFNHNLNIYIKHTAQFFNTYDFITGLIKATVFGAIISVSSCYYGYHCKEGARGVGVATTSTVVLSSILIILANYMITLIHA
>NC_021089.1|WP_041573607.1|978073_978256_-|50S-ribosomal-protein-L32
MAVPKRKKSKSRRNMHRSHHAIEPKNIVVCSTTGEFMLPHNVAVDGSYKGKRVFIKQQAE
>NC_021089.1|WP_015589311.1|977025_978063_-|phosphate-acyltransferase-PlsX
MLPTVNNNIVIALDAMGGDFAPLSVIHGAGFFLDNLVDPGIKVFFHIYGDKEEVSPLLSKYKKVSNNSEFTHCSDNVLANDKPSFALRHRKDSSMKAAIEAVKKGKAFGVVSSGNTGALMAISRFILGTLPNIYRPAIASICPTKTKSFALLDLGANVDCNADSLFQFALMGSIFAKIALKIDNPEVALLNIGTEEVKGNDSVRGAFELLKNAPGINFKGYIEASEFLEGSIDVIVADGFVGNVMLKTAEATASTFINLIKQEVFNSWIAKMLVGILLKSKLNKALTRFNPKIRSGAMFLGLNGIIIKSHGNSDAISFAHAIKFAVNAISENLNQKIINGVSHIE
>NC_021089.1|WP_015589310.1|976076_977033_-|ketoacyl-ACP-synthase-III
MNKSFILSTGSYLPRKMLSNNEIASIVETSDEWIRQRTGIVQRHIADEGELTSDLAVNAAKSAIEKAKISVDEIDLIIVATTTPDKTFPSCATIVQSKLKCKNAFAFDVQAACSGFIYAVTVADSLIKSNNRIKYALVIGAEIMSRIVDWEDRSTCVLFGDGAGAVVMKSEMGRSGIISTNLYSDGNVDILCTNGGVSSTGDSGKICMNGREVFKHAVDKLTASVEETLKCNNLKITDIDWLIPHQANIRIIEAVVKKLDFPIEKVINTVDKHANTSAASIPLALDYAIQESKIKSGNLVLLISIGAGLTWGSMLLHY
>NC_021089.1|WP_015589309.1|974324_975341_+|NAD(P)/FAD-dependent-oxidoreductase
MKTDIVIIGAGPVGIFTAFQAGMLDMKCHIIDVLDQAGGQCTALYPEKPIYDIPGYPVITAQKLIEQLMEQASPFKPIYHLSQKVEKISNNCDQSFIIITNTGTEVKCKAVIVAAGNGMFEPNRPPLNGILEYENKSVFYSVNKISDFQDKTIVIAGGGDSAADWTVELSKVAKKIYVIHRRKEFRCTPETRNKLESLESDGKIELVVPYQLHELAGGNGQLSTVIVKNIASKEEKEISADFLLPFFGLSMNLGPINNWGIQLEHSRIVVDPAILKTSRDRIYAIGDIAIYSGKLKLILSGFAESAMACHDIYKVIHNSPVNFQYSTSKGIHGKEKLP
>NC_021089.1|WP_015589308.1|972692_974021_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MTNTNETIFALSTVFGKSGVAVIRISGNYALKALNHFHIKKEIKPRFATLVDLYDDFNQLIDNGIIIYFPAPNSFTGENVIELQVHGSKAVIKIILEELSKIFVMARPGEFSLRAFLNGKFDLTQIEGIADLIDAETKMQAKQAIKQISGELERLYSNWRQRLITIQSKIEAYIDFPEDIWAEKSELEKINNEVQSLVRLIQEHLNDNRRGERLREGLHIVITGKPNVGKSTLFNFLAKRDIAIVSEYAGTTRDILEAHIDIGGYPIILSDTAGIRESSDPIESEGISRAKKRSFEADLRIELFPFEQRHNINCNVVNSDTIYVLSKADDVINNHNIKINGIDLLPISILKEIGTNKLISLIKEKAEEKFGHDRDTPVITRQRHRNHMKKALEHLQRFNIDNPIELISEDLRLAAFELGAVIGIIDVEEILSSVFSNFCVGK
>NC_021089.1|WP_041573606.1|971987_972470_-|NADH-quinone-oxidoreductase-subunit-NuoI
MLKKLAWYWSFAELIKGFAITLKYMFKPKVTLRYPMEKGPLSPRFRGEHALRRYPNGEERCIACKLCEVICPAQAIVIEAEEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPNFEFATETREELMYNKEKLLRNGEIWEDAIALRLKKNRPYY
>NC_021089.1|WP_015589316.1|982426_983326_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MALSKFLDPKLDLTFKRIFGTEKNKNILIHFLNDILGFTEINTIQEVEFLSTIMDPEIASDKQSIVDVLCRDSSGTRYVIEMQLTRDKGFEKRAQLYAAKAYSRQLDKSGNYIDLKKVFFIAISNCNLLPEEVDYISNHTIRDEKTNEHDLKDFQFIFIELPKFPKNKEEQLESIVDRWLFFFKYADETTEEDLRKIAEKAPIIKLAYDELDRFSWNEKDLVAYEERIMDLRKEEAILEYRLDLATEKGKKIGKEEGKIEGKIEVAKAMLANNVDVNTIVKFTGLSISEIEELSVNGTE
>NC_021089.1|WP_015589317.1|983360_984608_-|IscS-subfamily-cysteine-desulfurase
MNVESKKIHDAKIKLPIFLDYQSTTKVDPRVLEVMIPYFGEFSNAHSRSHSFGWTAEEAVEKARKHIADLVNADSKEIIFTSGATESNNTAIKGVAHFYKNKGNHIITVCTEHKCVLDSCRHLENEGFKVTYLPVKQNGIIDLLKLEEAITDKTILVSVMMVNNEIGVIQPVKEIGEICRKRNIFFHTDAAQSFGKVPIDVNEMCIDLMSLSSHKIYGPMGIGALYVRRKNPRVRLIPLISGGGQERGMRSGTVPTPLAVGFGEAARIAKEEMKKETTRVEELRDILYNKIKEAFPDIVLNGDYENRIPGNLNLSFPYVEGESLIMAIKDLAVSSGSACTSASLEPSYVVRSLNNGHDLEHSSIRFGLGRFTTKEEVLYAADLVAKNVGRLREMSPLWEMVQEGVDLNTVKWDSH
>NC_021089.1|WP_015589318.1|984894_986313_-|metalloprotease-TldD
MPNLDQIFFAQNDVNINNVYKIVNNALSNSDGGELFLEFCQSESLVFEDNILKHMDLNTRRGFGLRSFCEDSTSFVCSSEISEKEISNAASMVKSSVSLNKTNSINLNEETKSLYSRINPINEMDLNSKIKLLNEVNEYVRSKNNCVKQVKITLSGEWQVVQIIKGDHRLSDIRPLVRFNVLVIVEKDGRTERGSAGHGGRDSYSKFISEKKWKEVANQALEQALVNLEAIPTPAGEMTVVLGPGWPGILLHEAVGHGLEGDFNRKKVSAFSNSVGKQVAASDITVVDDGTLPNLRGSISVDDEGTPPSYNILIEDGILKGYMQDHMNAKLMGVSPTGNGRRESYKEVIMPRMTNTYMLPGKYTPKEIISSVKKGLYAVNFGGGQVDITSGKFVFSSSEAYLIENGKITQPVKGATLIGDGQTVLKKVSMVGNDLKLDPGVGTCSKDGQNVPVGVGQPTLKVDAITVGGTEI
>NC_021089.1|WP_015589319.1|986530_987022_+|hypothetical-protein
MYSEKNKLACRKKVRTYSKRLVTTLSTISFIGYIAALVLNIPVLSLYFSIACTILSVLSSTLNIWSLADHFRQRDLNKQLGVENTPGQEKLTKICLDITSNVLFLIGGITPILPFESPIIPFVSTAFFILGCAFMATNIVRTRISEPQAKKPTDDHSLTAKAA
>NC_021089.1|WP_015589320.1|987266_987974_+|uroporphyrinogen-III-synthase
MKSIFLTRPLLDSFNTRNILRKYGYKVFIEPVFTIKYLNPDISAYEFDVVISTSKNSVKALSQICKEDDFPIITVGNSTMQAAKNLGFSDIISADSNVDGLISFIKAHYSNAIKFLYIRGQEVSCDLKKRLSEEDFNIREVVLYKTIIKRSLTNRCKNLLLDGKIDSVAFFSSQTARVFCSLVLKSGLSHVMSNITAYTMSKNIADSLKLIKWKKIITSRLPTGESLIDIINKDC
>NC_021089.1|WP_015589321.1|987973_988753_+|exodeoxyribonuclease-III
MLKIATWNVNSIRKRVNQLCSFIVDSQVDIILLQEIKCTEEQFPYAEIEKLGYEYAIYGQVARNGVCVLSKYPILEKFKIDIVESHQEARYIECVIKHTNHKIRVGSVYVPNGQSPDSQAFEYKLKFFDNLYERMSTLLKNEELTIIAGDYNVAPDEIDVFDSNLLNGQVCFHIREREKLRAILNLGFKDAFRISHPNLQQFTWWHYQGNSLRNNQGMRIDYMLLSPQAVDKLETCYIDDRLRKLENPSDHTPVVCAIE
>NC_021089.1|WP_015589322.1|988789_989812_-|hypothetical-protein
MTKILTPQTKNLEPSNQVTNKDEKIFEKEEHQVIYDYFVKVLEGKAELKENKEITDYFISAYKDILLNNVNPKDIKPLSEENFSQFLLSVFEKIREKKLANEENLKNGKIKEVVDDCVADIRGTEAKDSSIKFVLEMLLLLIGGIKIDPKNISGSFMDGMKEKIPFLGKDKKEEDEPPLSDEEMVTTFLSKIFFPVLLSTIPMLIFGPTTLGVVLTAIGTIFAIKGGVEVLFSNNKKGTLYDPSSQDKDDTEKRAKLNGKILEGIDDILKTPVTEVEKGTSVSEQISQGKEKSEQQPVPEQISQENNRGNEESKQQDQPWTRKENKRREENTSNKQAGIT
>NC_021089.1|WP_015589323.1|989862_992439_-|DNA-polymerase-I
MKEKTFTIIDGYGFLFRAYYVLPHLITTTGMPIGGVYGFLNMVLKYIAHSDYLTIALDAGKKNFRHDLYPEYKANRVTPPEDLTPQFTILREAVEAFNLSYEEIEGYEADDIIATLAAKYANHQDFKVVVVSSDKDLFQLLNHNILIFDPIKNIYIDEKQVIEKFGVNSHKLLDLFSLTGDASDNIPGVPGIGPKTAAKLLDEFDSLNNIIENIDNIEQTRIRNILTEHKEKALISRELLSLCEKVDLQHDIAKYEVHSPNMEKLLSFLKKYEFNSLIGKMEKLFSYNGSSTKEKIEYSSEELEKFLEHCRYEGRIAIHCHFEDNLLNKISLSYSESNIFYIEQDSIQDALITINSTLLSNGVLKIIHNIKEIRKIFPAIEKMLDSVDDLMIMSYSLDTGKHDHSIPNIVAHNLSGDVEIFSAKTLIAIREKLKQRLFQEKLFTIYERFDKPLMKVIFDMEKNGILLNIQKLQELSDKFQQVIAVLEDEIYNLAGERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDSIDGRIHTSFSTTATATGRLSSSNPNLQNIPIRSEEGNLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAFKEAFANGQDIHEITARQVFGVQEIDEQLRRKAKSINFGIIYGISPFGLAKRLGITIAEAAEYINYYFSCYPEIKAYMEKAVSIARLHGYVETLFGRRCFVRDINNTIPYIRQFAERAAINAPLQGTAADIIKRATIQLFDQLKVGKIILQVHDELLVEVEDEKVQETAKLVKNIMEGVVEISIPLEVEIKVGDNWALNYDLNMADSKSIDYLN
>NC_021089.1|WP_081600771.1|992653_992818_-|IS3-family-transposase
MSHKGCCYNNSVVESFFSSLKREILIDTSQHSAQQTRTAIFEYIEIFYNKQRHY
>NC_021089.1|WP_095866567.1|993056_993398_-|IS3-family-transposase
MVNTIKCRNYVGFSASGYYKWTTRKISSRESANKELLADIQKIYQASKCRYGAPKIHAELKALGKSCNLKTVQSIMQKNGIQAILRRKFKIKKQQTDSSSQYIRPKLYCRSTK

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Crispr_ID: NC_021089_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021089_13

1063946-1064054

Orphan

Consensus_repeat	Method
CGTCATCCCGCTGCTTGTTAGCGGGATCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021089_13

>merge|NC_021089|13|1063946-1064054|CRISPRCasFinder
CGTCATCCCGCTGCTTGTTAGCGGGATCTCTTGTTAGCGCCGCGGCGGTATGACGGTTCGTGGCGGCGTGACGATAAGCTCGTCATCCCGCTGCTTGTTAGCGGGATCT

>NC_021089|13|12|1063946-1064054|CRISPRCasFinder
CGTCATCCCGCTGCTTGTTAGCGGGATCT	CTTGTTAGCGCCGCGGCGGTATGACGGTTCGTGGCGGCGTGACGATAAGCT
CGTCATCCCGCTGCTTGTTAGCGGGATCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_021089.1\|WP_010082086.1\|1075659_1075986_-\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|225571
NC_021089.1\|WP_006279484.1\|1075406_1075685_+\|succinate-dehydrogenase-assembly-factor-2	unknown	unknown	gnl\|CDD\|377166
NC_021089.1\|WP_041573541.1\|1053780_1054938_+\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|235541
NC_021089.1\|WP_010963035.1\|1076058_1076337_-\|integration-host-factor-subunit-beta	unknown	unknown	gnl\|CDD\|259858
NC_021089.1\|WP_015589374.1\|1071843_1074180_-\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|274514
NC_021089.1\|WP_015589373.1\|1071291_1071843_-\|OmpH-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|214922
NC_021089.1\|WP_015589371.1\|1066085_1067645_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|237164
NC_021089.1\|WP_015589370.1\|1064757_1066101_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NC_021089.1\|WP_006279640.1\|1070855_1071287_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
NC_021089.1\|WP_015589366.1\|1060469_1060829_-\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|240265
NC_021089.1\|WP_012673365.1\|1074188_1075307_-\|RIP-metalloprotease-RseP	unknown	unknown	gnl\|CDD\|223821
NC_021089.1\|WP_006280242.1\|1057348_1058578_-\|cytochrome-b/b6	unknown	unknown	gnl\|CDD\|214440
NC_021089.1\|WP_015589368.1\|1061459_1062683_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234586
NC_021089.1\|WP_015589369.1\|1062707_1063460_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_021089.1\|WP_015589367.1\|1060890_1061463_+\|NifU-family-protein	unknown	unknown	gnl\|CDD\|378032
NC_021089.1\|WP_007550541.1\|1055805_1055958_-\|transposase	unknown	unknown	gnl\|CDD\|279973
NC_021089.1\|WP_015589365.1\|1055026_1055764_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NC_021089.1\|WP_015589372.1\|1067948_1070810_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235832
NC_021089.1\|WP_010963022.1\|1056242_1057001_-\|cytochrome-c1	unknown	unknown	gnl\|CDD\|366950
NC_021089.1\|WP_015589363.1\|1053167_1053665_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_021089.1\|WP_010082086.1\|1075659_1075986_-\|cell-division-protein-ZapA	gnl\|CDD\|225571	COG3027, zapA, Cell division protein ZapA (stimulator of FtsZ polymerization and Z-ring component) [Cell cycle control, cell division, chromosome partitioning].	1.21984e-05
NC_021089.1\|WP_006279484.1\|1075406_1075685_+\|succinate-dehydrogenase-assembly-factor-2	gnl\|CDD\|377166	pfam03937, Sdh5, Flavinator of succinate dehydrogenase. This family includes the highly conserved mitochondrial and bacterial proteins Sdh5/SDHAF2/SdhE. Both yeast and human Sdh5/SDHAF2 interact with the catalytic subunit of the succinate dehydrogenase (SDH) complex, a component of both the electron transport chain and the tricarboxylic acid cycle. Sdh5 is required for SDH-dependent respiration and for Sdh1 flavination (incorporation of the flavin adenine dinucleotide cofactor). Mutational inactivation of Sdh5 confers tumor susceptibility in humans. Bacterial homologs of Sdh5, termed SdhE, are functionally conserved being required for the flavinylation of SdhA and succinate dehydrogenase activity. Like Sdh5, SdhE interacts with SdhA. Furthermore, SdhE was characterized as a FAD co-factor chaperone that directly binds FAD to facilitate the flavinylation of SdhA. Phylogenetic analysis demonstrates that SdhE/Sdh5 proteins evolved only once in an ancestral alpha-proteobacteria prior to the evolution of the mitochondria and now remain in subsequent descendants including eukaryotic mitochondria and the alpha, beta and gamma proteobacteria. This family was previously annotated in Pfam as being a divergent TPR repeat but structural evidence has indicated this is not true. The E. coli protein, YgfY also acts as the antitoxin to the membrane-bound toxin family Cpta, pfam13166, whose E. coli member YgfX, expressed from the same operon as YgfY.	1.9304e-21
NC_021089.1\|WP_041573541.1\|1053780_1054938_+\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|235541	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated.	2.14199e-155
NC_021089.1\|WP_010963035.1\|1076058_1076337_-\|integration-host-factor-subunit-beta	gnl\|CDD\|259858	cd13836, IHF_B, Beta subunit of integration host factor (IHFB). This subfamily consists of the beta subunit of integration host factor (IHF) and IHF-like domains. IHF is a nucleoid-associated protein (NAP) that binds and sharply bends many DNA targets in a sequence specific manner. It is a heterodimeric protein composed of two highly homologous subunits IHFA (IHF-alpha) and IHFB (IHF-beta). It is known to act as a transcription factor at many gene regulatory regions in E. coli. IHF is an essential cofactor in phage lambda site-specific recombination, having an architectural role during assembly of specialized nucleoprotein structures (snups). IHF is also involved in formation as well as maintenance of bacterial biofilms since it is found in complex with extracellular DNA (eDNA) within the extracellular polymeric substances (EPS) matrix of many biofilms.	5.22348e-22
NC_021089.1\|WP_015589374.1\|1071843_1074180_-\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|274514	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking].	0
NC_021089.1\|WP_015589373.1\|1071291_1071843_-\|OmpH-family-outer-membrane-protein	gnl\|CDD\|214922	smart00935, OmpH, Outer membrane protein (OmpH-like). This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.	3.42279e-18
NC_021089.1\|WP_015589371.1\|1066085_1067645_-\|oxidoreductase	gnl\|CDD\|237164	PRK12664, PRK12664, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NC_021089.1\|WP_015589370.1\|1064757_1066101_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NC_021089.1\|WP_006279640.1\|1070855_1071287_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	8.74769e-83
NC_021089.1\|WP_015589366.1\|1060469_1060829_-\|DnaJ-domain-containing-protein	gnl\|CDD\|240265	PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional.	8.13507e-14
NC_021089.1\|WP_012673365.1\|1074188_1075307_-\|RIP-metalloprotease-RseP	gnl\|CDD\|223821	COG0750, COG0750, Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane].	2.06179e-76
NC_021089.1\|WP_006280242.1\|1057348_1058578_-\|cytochrome-b/b6	gnl\|CDD\|214440	MTH00156, CYTB, cytochrome b; Provisional.	9.60759e-176
NC_021089.1\|WP_015589368.1\|1061459_1062683_+\|histidine--tRNA-ligase	gnl\|CDD\|234586	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.	0
NC_021089.1\|WP_015589369.1\|1062707_1063460_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	5.1306e-83
NC_021089.1\|WP_015589367.1\|1060890_1061463_+\|NifU-family-protein	gnl\|CDD\|378032	pfam08712, Nfu_N, Scaffold protein Nfu/NifU N terminal. This domain is found at the N-terminus of NifU and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the the assembly of iron-sulphur clusters.	6.33488e-41
NC_021089.1\|WP_007550541.1\|1055805_1055958_-\|transposase	gnl\|CDD\|279973	pfam01710, HTH_Tnp_IS630, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes insertion sequences from Synechocystis PCC 6803 three of which are characterized as homologous to bacterial IS5- and IS4- and to several members of the IS630-Tc1-mariner superfamily.	0.000368621
NC_021089.1\|WP_015589365.1\|1055026_1055764_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	5.06008e-127
NC_021089.1\|WP_015589372.1\|1067948_1070810_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|235832	PRK06567, PRK06567, putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated.	0
NC_021089.1\|WP_010963022.1\|1056242_1057001_-\|cytochrome-c1	gnl\|CDD\|366950	pfam02167, Cytochrom_C1, Cytochrome C1 family.	2.85276e-130

>NC_021089.1|WP_015589369.1|1062707_1063460_-|5'/3'-nucleotidase-SurE
MIILITNDDGFGSEGIKLLKEIARNFASEIWIVAPDTDRSGAARSLDYPVKQSIGINQHSEREFSVSGTPADCVIIALNKVMNKKPDLILSGVNIGSNVGDDICYSGTIGAVMEGAARSIPSIALSQVYHDKIDWHNTKVFAPKVIAKLVKVGWPKNIVMSVNFPATEKVKGVEFAEQGEYNIDGDLIFTENSNGSFSLNWSREHSGSGSINKIKEGFITITPVKLDFTDYDTLNAMKNSCADEFSSIAD
>NC_021089.1|WP_015589368.1|1061459_1062683_+|histidine--tRNA-ligase
MTNQTVRGTKDLLFDEWYKFKYIQQTANRISSLYGFLPAQTPIFEYTEVFTKTLGDSSDIITKEMYSFNDKGGKSITLRPEFTAAIVRLLIEKKLQTPIKLFSTGPAFRYERPQKGRQRQFHQINFEVFGIEDPKADVELISLAQHLLTEFGINKNVKLEINSLGDGETITKYREALILYFTKYQNDLSEDSKNRLIKNPLRILDSKDEKDRLIISDAPKISNYYTKESSDFFEQILNGLTILDIPYTVNNKLVRGLDYYCHTVFEFVTEDLGAQGAVFAGGRYDNLVSSVGGKHTPAIGFAGGIERIMELINYSPKEERPIYLIPIGREAEKHALTLANELRRNSLYVSYEHSGTVKNRMKKASQANAKIVLIFGNDELNNNTVKVKNMDTGEEKIIARDNTIENI
>NC_021089.1|WP_015589367.1|1060890_1061463_+|NifU-family-protein
MFIQIEETPNPNTLKFLPGFAILNEGETADFSNANEIKNSKLAANLFQIEHVVRVFFGHDFISVTKLGEINWDTLKVEILTTIMDHFTSGGKALNKEGVNDNNIPNEEFFDESDIEIVNRIKELMESYIKPAVAQDGGDIKFRGYKDGIVYVELQGACSGCPSAAITLKQGVQNMLSYHIPEVAGIETTL
>NC_021089.1|WP_015589366.1|1060469_1060829_-|DnaJ-domain-containing-protein
MSFIFFLFWIFIVVTFVLPSVVIFFLFLTKKNNMSFMMNSILSKFLNEFSSSRSYTENYTGDNMSKDEALKILGLNPEASQNEINKAYQNLMKLVHPDKGGSEYFAQKLNAARDKLLKK
>NC_021089.1|WP_006280242.1|1057348_1058578_-|cytochrome-b/b6
MQEDNKKETIKEEKGILGWIEYRLPIFSFLRHTASYQVPKNLNYAWNFGSLAGIALILQIITGIFLAMHYTPHVDYAFNSVERIMRDVNYGWLIRYTHAVGASLFFMVVYVHIMRGLYYGSYKRPREMVWFIGIFIFFAMMATAFMGYVLPWGQMSFWGATVITNLFSAIPLIGNKIVIWLWGGFSVDNPTLNRFFALHYLLPFVIIALAMLHVIALHRFGSGNPSGVEVKSDKDTIPLYPYYIVKDCITFGLFFVVLFAFVFYAPNYLGHPDNYIEADSMVTPVHIVPEWYFLPFYAMLRSIPDKLTGVLTMFASILVWFLLPWLDKSKVKSGAYRPVFKKFFWVFAINFVLLAWLGGQEVKEPYITMSRLSTLYYFAYFVIVLPLLSKYEKPKEPPKTLSDSVPEMR
>NC_021089.1|WP_010963022.1|1056242_1057001_-|cytochrome-c1
MGSNVFAIFCMLFLSSLISAEEFKSSPNKKIDWKFDGIVGSFDRESIQRGYKVYKEVCAACHSMNRVAFRNLQDVGFSEEDVKQIAASYQVKDGPNDLGEMFDRPGVPSDYFIAPFDTKEAAAASNNGAVPPDLSLIIKARHDGANYVYSLLTGYQNGEHDENDLYFNSYFPTGRLAMAPPLSEGMVEYDGARQATVENMAYDVINFLQWAAEPELERRHKLGLKVVAYFIILTVFFVLTNNKVWSKLYKKK
>NC_021089.1|WP_007550541.1|1055805_1055958_-|transposase
MPAAYSYDLRKKAMEALDEGESREAVAARFKIGRTTLWEWQHCRLDHKLC
>NC_021089.1|WP_015589365.1|1055026_1055764_-|tRNA-pseudouridine(38-40)-synthase-TruA
MRYKITVEYNGSSFSGWQKQQHSANSIQEKIENAIFNFSGEKIALYCGGRTDAGVHALGQVAHFDMEKECELYRIRNAINYHLKSIPIVVLNAEVVDDAFHARFSAKKRYYEYRIVNRYAPAALETGYVWQVFNPLDVNIMREAAKHLLGKHDLSSFRSKDCHAANPIRTIDDIDIVQNGNHIHIKISAISFLHNQVRIIAGTLVEFGKNRTNPQEMLHILSQCKRSAAGVTAPPFGLYLVKIDY
>NC_021089.1|WP_041573541.1|1053780_1054938_+|DNA-polymerase-III-subunit-beta
MSEVAGVDTEIKKQNSVCEQMRFSVSRTSLLNTLSRVSGVVERRNAIDVLACINIKAQHGSIKLMATDLDISMFASLAATVLTEGEVKISAHTLHDIVKKLPADLDVNFEVNNQGKLLMSCGNANFSLPNVVSSSFPALEEDNYKYDFTLLNTDLIDLLTKTKFAVSLDDTRYNLNGIYLHTDEQFLYCVATDGHRLSCIKRPKPGNINGEFGVIIPRKTVMELLKILDDCNEIKVKLSDRKIKFTCGEYILISKLIDGTFPNYKAVIPASQDKHMIIESKKLSDVIDRVSVVVSDKVKSIKFSLQEKLLTLHSNSQECSDATESIEVDYNEAPIEIGFNSRYLLDVLSCIKNKCKFSLADGNSATIITDEDDSNVLYVVMPMRT
>NC_021089.1|WP_015589363.1|1053167_1053665_+|hypothetical-protein
MRSFFIFLIFFSIGAFASVSDVQLKEKYKDWLVYTALEDGEKVCYIVSYPKKKSEHYTTNRKPYVMVSYVDKKADEVSVTSGFQYDKEPVALNIDKKIKYTLPIIQGSFAWAEHTKIDQDLILKMKQGLSMVVNGKTKTVTIDDTYSLLGFQKAYQKMHDSCHTK
>NC_021089.1|WP_015589370.1|1064757_1066101_-|signal-recognition-particle-protein
MFKSLTESLNSVFSKLRGKSIISEDDFNLAMREIRIALIEADVSLEVAKKFINDIKDKVIGEKVIKSVSPAQMIIKIVQDNLVAVLGSEKSDLNLAVKPPAVIMMVGLQGAGKTTTSGKLALKLKKQKKKVMLASLDIYRPAAQKQLEVLGKQIDVQTLPVVIDEKPITITKRALATAKNDNCDVLILDTAGRLHIDNNMMNELKAVKEIASPAEVILVADAMIGQDAVNIAKSFNEVIDVTGIILTRVDGDARGGAALSMKMIADCPIKFIACGEKLSDLDDFYPDRIAKRILSMGDVVSLVEKAAEIVGQEEIDKLQKKVKKGKFDLNDLVGMLKTLSKMDGISNIMKFIPSSFTKKLSSSVPDDNKVKKYIAIINSMTEKERQNPDILNGKRRLRISKGSGTTVTDINLLIKQYNQMSSMVNKFSKVDHSKLKESDLMDMLSRK
>NC_021089.1|WP_015589371.1|1066085_1067645_-|oxidoreductase
MQLYKSSLLLLLTVLIVIVLKLPENLSIAVNWSLPILDFDLSFRTILISFLSVAFLAVLPAQNLTFSEMLSFAAYTISSLYAVLSEHMILVIIFCELMTISAFFIIAASCRDSGPAIRYACVHFFVGVILIAGLALQSTNLIILGLLINCACFPFSFWVVDAYPAASLHGTTYLSLFTTKVSFLVMLLHTYNLWQDCTEILALVGTITAIYSIIFASLEQNIRRFLCYNVVGQMGLLIIAGGLLSPSEKAIPILILHIIFSLVYQSLLFVVSNSIISRTKTISFNGVGKLMSVEGMCAIIAILTMAAFPGTAGFISKSYITAEIEASGANLEVYKNLYKILNLLLYLSVGLKFLYYIFIAKSKSKPLAERGGKMTMIILAFICVIAGNPYLPIYNKPSIFDFVYNTKNILSQFNLLLCTTLLFILLRKLFYPRINFKMDVDWIFRAFIPYIILLFNQLVFKVREMSANVLQNLTNSLTSLYFDNITKLKEVLGYNSVSFVSASSLFLMSILLMLLCLSR
>NC_021089.1|WP_015589372.1|1067948_1070810_-|FAD-dependent-oxidoreductase
MKLNFKISFSNLYTRNGLIKLDETFLNYIKSCDESLFCSLIEAREKAASSSMSSQCHPPSSQCLTLGSRKQEGRSATWMTDSQLIVDLSYLLDEFIAKLFNVEKEIEELKKKHNDFAVIYKCKRLFVQRYALKKYTNVANIDITNKLSHFLTLPTTEKNFAEQVMHWFEDKENHKEEIELAAQYAVWRVKNKQSILFSIHKKIDHENLIPFSKKEVDKVEVLYSNEVKRRYGFDLTSKKVSLNKALDNAHYCIFCHKQSKDSCSKGLINNDNTFKQSPLKVELHGCPLEQKISEMNLVKSEGYSIASLAIVMIDNPLCAATGHRICNDCMNSCIYQKQEPVNVPAIETRILDDVLSLPYGFEIYSLLSRWNPLNFQRSLPRGNTGKNVLVVGLGPAGFNLAHHLLNDGHNVIAIDGLKIEPLIDNFQLIKDFKHEKLSERMAGGFGGVAEYGITSRWDKNYLKIIRLLLERRENFVLYGGIRFGGTINADDAFNLGFDHIALALGSGKPRMIKIKNILARGVRMASDFLMSLQLTGALKFDSIANLQVRMPIVVIGAGLTAIDTATEALAYYPIQVEKFLLRYEILVDKYGKDCVEKDWTEEEREIANEFISHAQLIREKQKLAKKENREIKILELMQSLGGVKVIYRKELKDSPSYRLNSEEVQNALSEGIYFIENLEPVEVVTDKYNHAELIKLIDTKSGEIKRIKARSIFIAAGTEPNTVIATEDKKHFKLSNGYFTQLNSLGKEIDPIFSPKMQNKDRILVYKQGNKTISFFGDLHPSYSGSVVKAMASAKNGYPIISQLLNRVNSFVSVIPVCDVVGQKKNAWPSVEDLANKELFNRIKEQFTAKVIKVQYLTDKVVEIVIKAPLAAKNFKPGQFFRLQNFETNGRKANNTNLAMEGIAVTGTEVDKKKGIISTIVLEIGGSTNLCRHLREGEQIILMGPTGRPTEVY
>NC_021089.1|WP_006279640.1|1070855_1071287_-|3-hydroxyacyl-ACP-dehydratase-FabZ
MQFNISDIIKILPHSYPFLLVDRVIECDPGKSIKAIKNVTFNEPFFIGHFPGHPIMPGVLIIESLAQASAICVLGKETIENKVVYLRSIENAKFRKPVTPGDTLILQANIQSVCLGVHKFRCIASVSEEKVAEATISAVLQNK
>NC_021089.1|WP_015589373.1|1071291_1071843_-|OmpH-family-outer-membrane-protein
MKYIQLFISVIALIISLFVGYKFVGYQPQNTKAAIIDSDKVINESLALQNIQQQIKEQNSRLQQEFESELEKLKTSKEEFELLSEEAKKEKTEQFNKHTVNTRDNYAKKMLHLEESYRDAVESVFNKIKEVAKKTAEKNNIDLVLFISKKNQVLYSMDEVDLSDVVLNNINKKIPEFALKGIE
>NC_021089.1|WP_015589374.1|1071843_1074180_-|outer-membrane-protein-assembly-factor-BamA
MKKLFYILVVVFISFPALLVALGTAEKVQVKDVKCIGNERVSNQTIGFYIKLKSGDYINDDDIDSIIKDLYKTKLFASVNAYIDDKKNLVIKIQENPLINKIILKGNKLFNSKELLNNVIQSKSLTIFTETKLQNDLMNLITTYRNNGKVGVKIEYELEKLDSNRVNLIFKIKEGKTSKIKDIRFIGNKNFSENELEQVIKRHSNDIFSKLFRAIFKGENHYSPQYLLINTELLDRFYSSKGYIQNNIQPIVEVDNNNQTELTFLIDEGQQYLFGNNEVNIETEIQDLSLKEEILDFITEENDKIFNRVKINNTVEKINKYLNEKGYIFAKVNPEYAQRDNVVDVTYRVLPGKKIYINQITIDGNDRTLDKVIRSKLSVAEGDAYNISEIQKSRKKLMSSDFFETVKVNSYAVNDNTVNLDLNVKEKNTTSLYLGGGVSLPGGALIKIDLKDRNLFGTGKELSFALEKSQYVFSTDLEFVENNFNDSDTSLGVDVFYEKQDKPNTTFDSCDMGFFTKLSYKVTENLTNSLRYSYKYNHIHMDNKGGQDTDISEIILDRKGEHQISSVGYTLAHNKLDNLYTPKEGYLLRLSQDISGLGGNVNFLKSEFLSFYTHPILSKIDDDITLRFKMAAGHIFSYTDENLNIGQHFFKGGNEIRGFDLSGIGPRAEDKNKSSLGGKTYFNLTQQVDFPLPKLYDYAGIKGSLFVDYATLFGLDDKNKKYEGKYYDSKLVRVSPGFGFSMLSPFGRLRLDFGFPLVKESYDIIPSPNVKFSIEAGI
>NC_021089.1|WP_012673365.1|1074188_1075307_-|RIP-metalloprotease-RseP
MELISNLIHQFSDGIYYFLSFSLIISVIVFVHEYGHYVVAKACKVKVESFSIGFGPEIFGFNDKSGTRWKLSAVPLGGYVKMLGDTNAASVPADQQELTEEEKLYSFHTKPRHKKAAVVFAGPFANMVFAVIAFTIFFSIAGYYRTPPVIENVIEGSAAKQAGLLPGDTITQINEHKIKYFEDISRVIMSNPKTRMEIEYSRNNEKHRTSLTPLIIKDKDVFGNTIERETIGIISVNTLKQSSFLGAVSLSVSETYHTMCLTIKALFHIIVGKRSINEIGGPIKIAKYSGQSAKKGFIMVLYFMAIISANLAAINLLPIPLLDGGHLFHYIIEAVIRRDLSLKCQKYAAIFGALVLFLLMATGMSNDIRDLF
>NC_021089.1|WP_006279484.1|1075406_1075685_+|succinate-dehydrogenase-assembly-factor-2
MTDTSLLRRKLIYRSWHRGCKETDILLGHFALKYLDKFSLSELIEYEKIVDLDDYELYCYITRKTNLPPGLNSQIVNLIACFIEANPLCTQD
>NC_021089.1|WP_010082086.1|1075659_1075986_-|cell-division-protein-ZapA
MQVVEIVIRNNTYKISCESGKGNHLLRLANSFDKLVSSVSQKTGGKGSDALNFLLAALILEDKILELTKRLDEVNQEREKYRNEKRIEYTEVLDKVNKIITNLECIKD
>NC_021089.1|WP_010963035.1|1076058_1076337_-|integration-host-factor-subunit-beta
MATKSDIIARVAKRHPFLDKIVIAAIVDRFFGILSSTLKHHNRVEIRGFGSFSVRSYNLKETSHLMLQKFTKNQYFKTYFRSSKKLSDLINE

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Crispr_ID: NC_021089_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021089_14

1079019-1079117

Orphan

Consensus_repeat	Method
GGCGCTAACAAGTAGCGGGATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021089_14

>merge|NC_021089|14|1079019-1079117|CRISPRCasFinder
GGCGCTAACAAGTAGCGGGATGATGAGGCTTATCGTCATGCCACCGCGAACCGTCATACCGTCACGGTATCTCTTAGCCGCTAACAAGTAGCGGGATGA

>NC_021089|14|13|1079019-1079117|CRISPRCasFinder
GGCGCTAACAAGTAGCGGGATGA	TGAGGCTTATCGTCATGCCACCGCGAACCGTCATACCGTCACGGTATCTCTTA
GCCGCTAACAAGTAGCGGGATGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_021089.1\|WP_010082086.1\|1075659_1075986_-\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|225571
NC_021089.1\|WP_012673367.1\|1078158_1078824_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NC_021089.1\|WP_007548592.1\|1086267_1087248_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl\|CDD\|234638
NC_021089.1\|WP_015589380.1\|1084055_1084598_+\|demethoxyubiquinone-hydroxylase-family-protein	unknown	unknown	gnl\|CDD\|377007
NC_021089.1\|WP_010963035.1\|1076058_1076337_-\|integration-host-factor-subunit-beta	unknown	unknown	gnl\|CDD\|259858
NC_021089.1\|WP_015589378.1\|1082237_1083563_+\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|234628
NC_021089.1\|WP_015589374.1\|1071843_1074180_-\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|274514
NC_021089.1\|WP_006279484.1\|1075406_1075685_+\|succinate-dehydrogenase-assembly-factor-2	unknown	unknown	gnl\|CDD\|377166
NC_021089.1\|WP_081600794.1\|1085096_1085732_-\|transposase	unknown	unknown	gnl\|CDD\|376573
NC_021089.1\|WP_012673365.1\|1074188_1075307_-\|RIP-metalloprotease-RseP	unknown	unknown	gnl\|CDD\|223821
NC_021089.1\|WP_010963040.1\|1080054_1080447_+\|TraR/DksA-C4-type-zinc-finger-protein	unknown	unknown	gnl\|CDD\|274124
NC_021089.1\|WP_015589376.1\|1079300_1079948_-\|heme-exporter-protein-CcmB	unknown	unknown	gnl\|CDD\|281385
NC_021089.1\|WP_015589375.1\|1076366_1078019_-\|30S-ribosomal-protein-S1	unknown	unknown	gnl\|CDD\|235775
NC_021089.1\|WP_015589377.1\|1081896_1082106_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589381.1\|1087254_1087851_+\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|260003
NC_021089.1\|WP_006279640.1\|1070855_1071287_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
NC_021089.1\|WP_015589379.1\|1083559_1084081_+\|disulfide-bond-formation-protein-B	unknown	unknown	gnl\|CDD\|376848
NC_021089.1\|WP_015589373.1\|1071291_1071843_-\|OmpH-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|214922
NC_021089.1\|WP_015589372.1\|1067948_1070810_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235832
NC_021089.1\|WP_141456678.1\|1085715_1086045_-\|transposase	unknown	unknown	gnl\|CDD\|290455

Protein	Function_ID	Function_description	E-value
NC_021089.1\|WP_010082086.1\|1075659_1075986_-\|cell-division-protein-ZapA	gnl\|CDD\|225571	COG3027, zapA, Cell division protein ZapA (stimulator of FtsZ polymerization and Z-ring component) [Cell cycle control, cell division, chromosome partitioning].	1.21984e-05
NC_021089.1\|WP_012673367.1\|1078158_1078824_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	9.39925e-54
NC_021089.1\|WP_007548592.1\|1086267_1087248_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl\|CDD\|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	1.20936e-127
NC_021089.1\|WP_015589380.1\|1084055_1084598_+\|demethoxyubiquinone-hydroxylase-family-protein	gnl\|CDD\|377007	pfam03232, COQ7, Ubiquinone biosynthesis protein COQ7. Members of this family contain two repeats of about 90 amino acids, that contains two conserved motifs. One of these DXEXXH may be part of an enzyme active site.	2.80537e-80
NC_021089.1\|WP_010963035.1\|1076058_1076337_-\|integration-host-factor-subunit-beta	gnl\|CDD\|259858	cd13836, IHF_B, Beta subunit of integration host factor (IHFB). This subfamily consists of the beta subunit of integration host factor (IHF) and IHF-like domains. IHF is a nucleoid-associated protein (NAP) that binds and sharply bends many DNA targets in a sequence specific manner. It is a heterodimeric protein composed of two highly homologous subunits IHFA (IHF-alpha) and IHFB (IHF-beta). It is known to act as a transcription factor at many gene regulatory regions in E. coli. IHF is an essential cofactor in phage lambda site-specific recombination, having an architectural role during assembly of specialized nucleoprotein structures (snups). IHF is also involved in formation as well as maintenance of bacterial biofilms since it is found in complex with extracellular DNA (eDNA) within the extracellular polymeric substances (EPS) matrix of many biofilms.	5.22348e-22
NC_021089.1\|WP_015589378.1\|1082237_1083563_+\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|234628	PRK00093, PRK00093, GTP-binding protein Der; Reviewed.	0
NC_021089.1\|WP_015589374.1\|1071843_1074180_-\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|274514	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking].	0
NC_021089.1\|WP_006279484.1\|1075406_1075685_+\|succinate-dehydrogenase-assembly-factor-2	gnl\|CDD\|377166	pfam03937, Sdh5, Flavinator of succinate dehydrogenase. This family includes the highly conserved mitochondrial and bacterial proteins Sdh5/SDHAF2/SdhE. Both yeast and human Sdh5/SDHAF2 interact with the catalytic subunit of the succinate dehydrogenase (SDH) complex, a component of both the electron transport chain and the tricarboxylic acid cycle. Sdh5 is required for SDH-dependent respiration and for Sdh1 flavination (incorporation of the flavin adenine dinucleotide cofactor). Mutational inactivation of Sdh5 confers tumor susceptibility in humans. Bacterial homologs of Sdh5, termed SdhE, are functionally conserved being required for the flavinylation of SdhA and succinate dehydrogenase activity. Like Sdh5, SdhE interacts with SdhA. Furthermore, SdhE was characterized as a FAD co-factor chaperone that directly binds FAD to facilitate the flavinylation of SdhA. Phylogenetic analysis demonstrates that SdhE/Sdh5 proteins evolved only once in an ancestral alpha-proteobacteria prior to the evolution of the mitochondria and now remain in subsequent descendants including eukaryotic mitochondria and the alpha, beta and gamma proteobacteria. This family was previously annotated in Pfam as being a divergent TPR repeat but structural evidence has indicated this is not true. The E. coli protein, YgfY also acts as the antitoxin to the membrane-bound toxin family Cpta, pfam13166, whose E. coli member YgfX, expressed from the same operon as YgfY.	1.9304e-21
NC_021089.1\|WP_081600794.1\|1085096_1085732_-\|transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	2.37885e-12
NC_021089.1\|WP_012673365.1\|1074188_1075307_-\|RIP-metalloprotease-RseP	gnl\|CDD\|223821	COG0750, COG0750, Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane].	2.06179e-76
NC_021089.1\|WP_010963040.1\|1080054_1080447_+\|TraR/DksA-C4-type-zinc-finger-protein	gnl\|CDD\|274124	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage. [Transcription, Transcription factors, Regulatory functions, Small molecule interactions].	4.34463e-16
NC_021089.1\|WP_015589376.1\|1079300_1079948_-\|heme-exporter-protein-CcmB	gnl\|CDD\|281385	pfam03379, CcmB, CcmB protein. CcmB is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor. CcmB is required for the export of haem to the periplasm.	4.31896e-12
NC_021089.1\|WP_015589375.1\|1076366_1078019_-\|30S-ribosomal-protein-S1	gnl\|CDD\|235775	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed.	0
NC_021089.1\|WP_015589379.1\|1083559_1084081_+\|disulfide-bond-formation-protein-B	gnl\|CDD\|376848	pfam02600, DsbB, Disulfide bond formation protein DsbB. This family consists of disulfide bond formation protein DsbB from bacteria. The DsbB protein oxidizes the periplasmic protein DsbA which in turn oxidizes cysteines in other periplasmic proteins in order to make disulfide bonds. DsbB acts as a redox potential transducer across the cytoplasmic membrane and is an integral membrane protein. DsbB posses six cysteines four of which are necessary for it proper function in vivo.	4.19646e-20
NC_021089.1\|WP_015589381.1\|1087254_1087851_+\|ribonuclease-HII	gnl\|CDD\|260003	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like. This family includes mostly bacterial type 2 RNases H, with some eukaryotic members. Bacterial RNase HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII; double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype. In Leishmania mitochondria, of the four distinct RNase H genes (H1, HIIA, HIIB, HIIC), HIIC is essential for the survival of the parasite and thus can be a potential target for anti-leishmanial chemotherapy. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair.	8.58448e-103
NC_021089.1\|WP_006279640.1\|1070855_1071287_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	8.74769e-83
NC_021089.1\|WP_015589373.1\|1071291_1071843_-\|OmpH-family-outer-membrane-protein	gnl\|CDD\|214922	smart00935, OmpH, Outer membrane protein (OmpH-like). This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.	3.42279e-18
NC_021089.1\|WP_015589372.1\|1067948_1070810_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|235832	PRK06567, PRK06567, putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated.	0
NC_021089.1\|WP_141456678.1\|1085715_1086045_-\|transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	3.64684e-11

>NC_021089.1|WP_012673367.1|1078158_1078824_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MLFKNSKWIRSFSRRSRLKPDVDEILEKYSIQNSKESIEKIVNSQKRIWVEIGFGNGENMLYQVLNEPDLLFIGCEPYLKGVSRLLTNIEIQNIKNILMWTEDARELIANFPDNSVERFFILFPDPWPKRSHNKRRLINTEFLNLLAKKILITGEIFIATDHQDYAEWIASHIKQCNSLIYREDDFTSYTLTKYHRRALKDQRKVRFFKVSVINNLQTMDQ
>NC_021089.1|WP_015589375.1|1076366_1078019_-|30S-ribosomal-protein-S1
MNNNNPVVNLPVTIRKLSSNKFIEEICQGQFEDQDNTLFEDSFVNKIKEGDVVEGVITRINPNDVVVDIGLKSDGRILIKELGCNDEVIIGSKIRVYVERIEDYHGNVVLSREKAIRDEKWNKLEEDTVTRAEVSGVIKRSIKCGFIVDLGDGISAFLPLSHVDLKQVKDAKHLIETEQKFIVLKMDKKQGNIVVSRKLVLEKLHAGEKIKFLESLNEGDIIEGKIKSITHYGVFVGIHESDVVGVIDGLLHITDISWSRVSHPSAVFTCGQTIKVKIIKIDKENAKISLGVKQLEDSPWQDAESKYPVDSVNKGYVTSIEDYGLFVELRPGIEGLVHSSEITWVKSNLPVSSLVTRGQEVYVKILSIDIAKSRMSLSMKRCVDNPWQVFINKYPPGSIVSGEVKNNTGSYVSVAFGDSEIDENVEGTIYVKDFSWSKNGSDEIKKYNVGDKIEAKVIRANVNRARTYLGIKQIEYDPLEELIKKVKVGDKIQVIVGKREDNGLVVEVENDVTLLIDQEHLPENKKFSISEKIEVEVLGVEEYNIALSAK
>NC_021089.1|WP_010963035.1|1076058_1076337_-|integration-host-factor-subunit-beta
MATKSDIIARVAKRHPFLDKIVIAAIVDRFFGILSSTLKHHNRVEIRGFGSFSVRSYNLKETSHLMLQKFTKNQYFKTYFRSSKKLSDLINE
>NC_021089.1|WP_010082086.1|1075659_1075986_-|cell-division-protein-ZapA
MQVVEIVIRNNTYKISCESGKGNHLLRLANSFDKLVSSVSQKTGGKGSDALNFLLAALILEDKILELTKRLDEVNQEREKYRNEKRIEYTEVLDKVNKIITNLECIKD
>NC_021089.1|WP_006279484.1|1075406_1075685_+|succinate-dehydrogenase-assembly-factor-2
MTDTSLLRRKLIYRSWHRGCKETDILLGHFALKYLDKFSLSELIEYEKIVDLDDYELYCYITRKTNLPPGLNSQIVNLIACFIEANPLCTQD
>NC_021089.1|WP_012673365.1|1074188_1075307_-|RIP-metalloprotease-RseP
MELISNLIHQFSDGIYYFLSFSLIISVIVFVHEYGHYVVAKACKVKVESFSIGFGPEIFGFNDKSGTRWKLSAVPLGGYVKMLGDTNAASVPADQQELTEEEKLYSFHTKPRHKKAAVVFAGPFANMVFAVIAFTIFFSIAGYYRTPPVIENVIEGSAAKQAGLLPGDTITQINEHKIKYFEDISRVIMSNPKTRMEIEYSRNNEKHRTSLTPLIIKDKDVFGNTIERETIGIISVNTLKQSSFLGAVSLSVSETYHTMCLTIKALFHIIVGKRSINEIGGPIKIAKYSGQSAKKGFIMVLYFMAIISANLAAINLLPIPLLDGGHLFHYIIEAVIRRDLSLKCQKYAAIFGALVLFLLMATGMSNDIRDLF
>NC_021089.1|WP_015589374.1|1071843_1074180_-|outer-membrane-protein-assembly-factor-BamA
MKKLFYILVVVFISFPALLVALGTAEKVQVKDVKCIGNERVSNQTIGFYIKLKSGDYINDDDIDSIIKDLYKTKLFASVNAYIDDKKNLVIKIQENPLINKIILKGNKLFNSKELLNNVIQSKSLTIFTETKLQNDLMNLITTYRNNGKVGVKIEYELEKLDSNRVNLIFKIKEGKTSKIKDIRFIGNKNFSENELEQVIKRHSNDIFSKLFRAIFKGENHYSPQYLLINTELLDRFYSSKGYIQNNIQPIVEVDNNNQTELTFLIDEGQQYLFGNNEVNIETEIQDLSLKEEILDFITEENDKIFNRVKINNTVEKINKYLNEKGYIFAKVNPEYAQRDNVVDVTYRVLPGKKIYINQITIDGNDRTLDKVIRSKLSVAEGDAYNISEIQKSRKKLMSSDFFETVKVNSYAVNDNTVNLDLNVKEKNTTSLYLGGGVSLPGGALIKIDLKDRNLFGTGKELSFALEKSQYVFSTDLEFVENNFNDSDTSLGVDVFYEKQDKPNTTFDSCDMGFFTKLSYKVTENLTNSLRYSYKYNHIHMDNKGGQDTDISEIILDRKGEHQISSVGYTLAHNKLDNLYTPKEGYLLRLSQDISGLGGNVNFLKSEFLSFYTHPILSKIDDDITLRFKMAAGHIFSYTDENLNIGQHFFKGGNEIRGFDLSGIGPRAEDKNKSSLGGKTYFNLTQQVDFPLPKLYDYAGIKGSLFVDYATLFGLDDKNKKYEGKYYDSKLVRVSPGFGFSMLSPFGRLRLDFGFPLVKESYDIIPSPNVKFSIEAGI
>NC_021089.1|WP_015589373.1|1071291_1071843_-|OmpH-family-outer-membrane-protein
MKYIQLFISVIALIISLFVGYKFVGYQPQNTKAAIIDSDKVINESLALQNIQQQIKEQNSRLQQEFESELEKLKTSKEEFELLSEEAKKEKTEQFNKHTVNTRDNYAKKMLHLEESYRDAVESVFNKIKEVAKKTAEKNNIDLVLFISKKNQVLYSMDEVDLSDVVLNNINKKIPEFALKGIE
>NC_021089.1|WP_006279640.1|1070855_1071287_-|3-hydroxyacyl-ACP-dehydratase-FabZ
MQFNISDIIKILPHSYPFLLVDRVIECDPGKSIKAIKNVTFNEPFFIGHFPGHPIMPGVLIIESLAQASAICVLGKETIENKVVYLRSIENAKFRKPVTPGDTLILQANIQSVCLGVHKFRCIASVSEEKVAEATISAVLQNK
>NC_021089.1|WP_015589372.1|1067948_1070810_-|FAD-dependent-oxidoreductase
MKLNFKISFSNLYTRNGLIKLDETFLNYIKSCDESLFCSLIEAREKAASSSMSSQCHPPSSQCLTLGSRKQEGRSATWMTDSQLIVDLSYLLDEFIAKLFNVEKEIEELKKKHNDFAVIYKCKRLFVQRYALKKYTNVANIDITNKLSHFLTLPTTEKNFAEQVMHWFEDKENHKEEIELAAQYAVWRVKNKQSILFSIHKKIDHENLIPFSKKEVDKVEVLYSNEVKRRYGFDLTSKKVSLNKALDNAHYCIFCHKQSKDSCSKGLINNDNTFKQSPLKVELHGCPLEQKISEMNLVKSEGYSIASLAIVMIDNPLCAATGHRICNDCMNSCIYQKQEPVNVPAIETRILDDVLSLPYGFEIYSLLSRWNPLNFQRSLPRGNTGKNVLVVGLGPAGFNLAHHLLNDGHNVIAIDGLKIEPLIDNFQLIKDFKHEKLSERMAGGFGGVAEYGITSRWDKNYLKIIRLLLERRENFVLYGGIRFGGTINADDAFNLGFDHIALALGSGKPRMIKIKNILARGVRMASDFLMSLQLTGALKFDSIANLQVRMPIVVIGAGLTAIDTATEALAYYPIQVEKFLLRYEILVDKYGKDCVEKDWTEEEREIANEFISHAQLIREKQKLAKKENREIKILELMQSLGGVKVIYRKELKDSPSYRLNSEEVQNALSEGIYFIENLEPVEVVTDKYNHAELIKLIDTKSGEIKRIKARSIFIAAGTEPNTVIATEDKKHFKLSNGYFTQLNSLGKEIDPIFSPKMQNKDRILVYKQGNKTISFFGDLHPSYSGSVVKAMASAKNGYPIISQLLNRVNSFVSVIPVCDVVGQKKNAWPSVEDLANKELFNRIKEQFTAKVIKVQYLTDKVVEIVIKAPLAAKNFKPGQFFRLQNFETNGRKANNTNLAMEGIAVTGTEVDKKKGIISTIVLEIGGSTNLCRHLREGEQIILMGPTGRPTEVY
>NC_021089.1|WP_015589376.1|1079300_1079948_-|heme-exporter-protein-CcmB
MIDSVKKLVIDDKNFTYIVCIFIIMLSLSSFTLKNNNKQEVMLTLTWICATFVLQISTNNLFTSDYHDGILEQIFVQPLSSRLIVAYKIFAHWLLFGLPISVISSIFSFAILGNSIEHSIAVGVSLLFNTLIITNISATGNALMIGQNNLASGVSQILVLPMIMPTFVYFKMLTQFENLSLNIYTLLITILVFVILIVNSTVTTHMALKFAVEQD
>NC_021089.1|WP_010963040.1|1080054_1080447_+|TraR/DksA-C4-type-zinc-finger-protein
MEKLPKIKSPEDYTPSEDEEYMSVKQLEYFSLKLQSILAELEKQELEDNSIDTYYSDEDSGNEELIKRRKDRKEKIKEALEKIKLGTYGYCDGTGEEIGVERLKANPLAIYCIEEQERVEKEKNVYNIND
>NC_021089.1|WP_015589377.1|1081896_1082106_-|hypothetical-protein
MLVSEQIESVDREELKQQNHIHKDTECSEETTIYGHINQHMEKNISNTLHEIYDALMSYNESEQSMTST
>NC_021089.1|WP_015589378.1|1082237_1083563_+|ribosome-biogenesis-GTPase-Der
MLKIAIVGLPNAGKSTLFNRLVGRKAAVVSNIPGVTRDRREGMGRISDLEFKIIDTGGWNDQTNFSLQVIEQIEFSLSNSNIIFFLVDAKVQNERNEEFAKWLKRKINKPVILVANKCESHKSENVDYLQFFDFLGPVYISAEHNLGMVDLYDALAGVIENFNENTELPNNELSRLRIAIIGRPNVGKSTFLNGLLAENRLITSSEPGTTRDSVDITYDHDGELITLIDTAGIRRKANVVDGLESRFVEKSMESIKRSHVVVLMLDSLVGIEQQDLSIGEAAIKGGKGIIVVLNKWDLIGKDDRSRLIKFVKQQEVTRLFLEVPTITISALKGMRCGDVIDKCLEVSESLNKKISTAKLNKWLIDAVGKHSHPLVKGKAVKMKYIAQIGTKPPAFSLICNIPESVDESYKRYLINDLRKNFFADGVPVRLLLKKNKNPYVK
>NC_021089.1|WP_015589379.1|1083559_1084081_+|disulfide-bond-formation-protein-B
MNTLLYTFRDNLLKVMCNNSRIPAIFLLSSAAALIFAYVLEYFFNMLPCKLCTYERIVYYIAGLLAVACMLKDNKILIYAMFCSYLIGAVISFYHIGLELHLFHDVLGCTEQASGNVSIEELRNNLLNPNYSPSCDRPHYVLGVSLATWNLIYLIVALFVSGKVYCGERKKSK
>NC_021089.1|WP_015589380.1|1084055_1084598_+|demethoxyubiquinone-hydroxylase-family-protein
MEKERNLNNLRYSNNQFLQQAIRIDHAGEYGAICIYSGQKFILKKSSIINEIIEMEEQEKKHFHYFNEKIKEQKVRPTVLLPVWRVLGVSLGVATAIMGKKAAMACTAAVEEVIGEHYKEQVSHLEDGELRETISKFRDEELEHKDIAIQHNAESAFGYNILSSFIKTGCKTAIYLSKLI
>NC_021089.1|WP_081600794.1|1085096_1085732_-|transposase
MIAENNMEDIEIAIDSTGISIYNNTPGHSKENSTDRKYRGYEQTRKLHVMLNINNKKAIAVKYSNGVYSDHYGACDLLKEVDFQHAIKALYADRACDRHKFYKLCNEYDIKTKIPPINNAAEHPETDYMSDRNAAIRLIKLYGEDGMKEWKKEVNYGKRSYIEGFFSRLKQIFGFSFRNKSEINREKELLIKCYLLNKFTDIGMAKFEIVT
>NC_021089.1|WP_141456678.1|1085715_1086045_-|transposase
MPQKMRVSNCHEYNKFLQERGSIFCYINDAIENWYENCPKMQGGNYIYSDKVVILVHIIVSFFRIGLRQTVGFIKGYLQQIGRDLAVISYSQASRRFKKLNIKINDCRK
>NC_021089.1|WP_007548592.1|1086267_1087248_+|phospho-N-acetylmuramoyl-pentapeptide--transferase
MILATKVFFTSFVFGFILFPYFIKLLKKISKDGQPIRSCGPESHLITKKNVPPMGGIIILTSSLLPILLWVQLTPEILLLILITLFFALLGFIDDYLKLKTNHYRGLSAKTKILIQFIVALVGVFILKLYSAECFTKTSLFKGVIIDFGYLYVPFAAFVIVGSSNAVNLTDGLDGLAATQVITSFAFLGLIAYITQADMNITLFCIAFIGAILSFLWFNTHPAKIFMGDVGSLSVGAALGLTSVLIKREMLFAVIGIIFVIETLSVIIQISYFKYTKFKYGEGKRVFLMAPMHHHFEKKGWSENVIVMKFWIISIICSVFTITFLL
>NC_021089.1|WP_015589381.1|1087254_1087851_+|ribonuclease-HII
MKYPDFTLENKLSGVIAGVDEVGRGPLAGPVISAAVVFIDRNTIIDGINDSKKLTPQCRQVLYEKIISVAKFGIGMASVEEINSYNILQATKLSMKRALIDLDLELDYVLVDGNQPPEVKWQVKSIVNGDNLSTSIAAASIVAKVTRDRLMQELHNKHPEYNWYKNKGYGTKEHLNAIGLYGITEHHRKNFAPISRAL

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Crispr_ID: NC_021089_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021089_15

1111956-1112095

Orphan

Consensus_repeat	Method
CTTGTTAGCTGATGAGATACCGCGAATGAATCGCGGTATGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021089_15

>merge|NC_021089|15|1111956-1112095|CRISPRCasFinder
CTTGTTAGCTGATGAGATACCGCGAATGAATCGCGGTATGACGGTTCGCGGCAGCATGACGGTAAGCTCGTCATCCCACTACTTGTTAGCGGGATCTCTTGTTAGCGGATGAGATACCGCGAATGAATCGCGGTATGACG

>NC_021089|15|14|1111956-1112095|CRISPRCasFinder
CTTGTTAGCTGATGAGATACCGCGAATGAATCGCGGTATGACG	GTTCGCGGCAGCATGACGGTAAGCTCGTCATCCCACTACTTGTTAGCGGGATCT
CTTGTTAGCGGATGAGATACCGCGAATGAATCGCGGTATGACG

Protein	Signature genes	Signature genes Name	Protein_function
NC_021089.1\|WP_015589403.1\|1118390_1119284_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NC_021089.1\|WP_006280257.1\|1124474_1125110_+\|chromosomal-DNA-replication-initiator-DnaA	unknown	unknown	gnl\|CDD\|168630
NC_021089.1\|WP_015589400.1\|1114745_1115804_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275380
NC_021089.1\|WP_015589394.1\|1105206_1105575_-\|HIT-domain-containing-protein	unknown	unknown	gnl\|CDD\|238607
NC_021089.1\|WP_174516854.1\|1119518_1119920_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NC_021089.1\|WP_015589397.1\|1108395_1109346_+\|complex-I-NDUFA9-subunit-family-protein	unknown	unknown	gnl\|CDD\|187579
NC_021089.1\|WP_015589399.1\|1112237_1114688_+\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|235840
NC_021089.1\|WP_015589395.1\|1105852_1106632_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589406.1\|1121823_1123017_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|236492
NC_021089.1\|WP_015589398.1\|1110394_1111846_+\|phage-terminase-large-subunit	unknown	unknown	gnl\|CDD\|227697
NC_021089.1\|WP_015589405.1\|1120019_1121084_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NC_021089.1\|WP_015589407.1\|1123280_1124345_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NC_021089.1\|WP_007548576.1\|1103759_1104332_-\|NADH-quinone-oxidoreductase-subunit-C	unknown	unknown	gnl\|CDD\|235691
NC_021089.1\|WP_006279576.1\|1104834_1105188_-\|NADH-quinone-oxidoreductase-subunit-A	unknown	unknown	gnl\|CDD\|180638
NC_021089.1\|WP_006279574.1\|1104324_1104831_-\|NADH-quinone-oxidoreductase-subunit-B	unknown	unknown	gnl\|CDD\|235797
NC_021089.1\|WP_006279579.1\|1105578_1105836_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_007548577.1\|1102805_1103756_-\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|180477
NC_021089.1\|WP_015589402.1\|1116781_1118380_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
NC_021089.1\|WP_015589396.1\|1106815_1108345_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	unknown	unknown	gnl\|CDD\|223841
NC_021089.1\|WP_015589401.1\|1115845_1116652_-\|rhodanese-related-sulfurtransferase	unknown	unknown	gnl\|CDD\|223982

Protein	Function_ID	Function_description	E-value
NC_021089.1\|WP_015589403.1\|1118390_1119284_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	8.56008e-45
NC_021089.1\|WP_015589400.1\|1114745_1115804_+\|hypothetical-protein	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	5.08456e-40
NC_021089.1\|WP_015589399.1\|1112237_1114688_+\|type-I-DNA-topoisomerase	gnl\|CDD\|235840	PRK06599, PRK06599, DNA topoisomerase I; Validated.	0
NC_021089.1\|WP_174516854.1\|1119518_1119920_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	1.55795e-64
NC_021089.1\|WP_015589397.1\|1108395_1109346_+\|complex-I-NDUFA9-subunit-family-protein	gnl\|CDD\|187579	cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs. This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.63604e-98
NC_021089.1\|WP_015589406.1\|1121823_1123017_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|236492	PRK09382, ispDF, bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional.	2.13285e-138
NC_021089.1\|WP_006280257.1\|1124474_1125110_+\|chromosomal-DNA-replication-initiator-DnaA	gnl\|CDD\|168630	PRK06620, PRK06620, hypothetical protein; Validated.	2.21927e-33
NC_021089.1\|WP_015589398.1\|1110394_1111846_+\|phage-terminase-large-subunit	gnl\|CDD\|227697	COG5410, COG5410, Uncharacterized protein conserved in bacteria [Function unknown].	9.38028e-60
NC_021089.1\|WP_015589405.1\|1120019_1121084_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	2.18672e-162
NC_021089.1\|WP_015589407.1\|1123280_1124345_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	1.74619e-40
NC_021089.1\|WP_007548576.1\|1103759_1104332_-\|NADH-quinone-oxidoreductase-subunit-C	gnl\|CDD\|235691	PRK06074, PRK06074, NADH dehydrogenase subunit C; Provisional.	1.18695e-67
NC_021089.1\|WP_006279576.1\|1104834_1105188_-\|NADH-quinone-oxidoreductase-subunit-A	gnl\|CDD\|180638	PRK06602, PRK06602, NADH:ubiquinone oxidoreductase subunit A; Validated.	3.17922e-50
NC_021089.1\|WP_006279574.1\|1104324_1104831_-\|NADH-quinone-oxidoreductase-subunit-B	gnl\|CDD\|235797	PRK06411, PRK06411, NADH-quinone oxidoreductase subunit NuoB.	5.05947e-106
NC_021089.1\|WP_015589394.1\|1105206_1105575_-\|HIT-domain-containing-protein	gnl\|CDD\|238607	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.	6.32981e-39
NC_021089.1\|WP_007548577.1\|1102805_1103756_-\|malate-dehydrogenase	gnl\|CDD\|180477	PRK06223, PRK06223, malate dehydrogenase; Reviewed.	0
NC_021089.1\|WP_015589402.1\|1116781_1118380_+\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	1.29647e-85
NC_021089.1\|WP_015589396.1\|1106815_1108345_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	gnl\|CDD\|223841	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane].	3.43988e-133
NC_021089.1\|WP_015589401.1\|1115845_1116652_-\|rhodanese-related-sulfurtransferase	gnl\|CDD\|223982	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only].	1.10227e-112

>NC_021089.1|WP_015589398.1|1110394_1111846_+|phage-terminase-large-subunit
MNFLKFIELCFQTVVPGCEYNDYQYIKVIADRLEAASAGEVKRIIFNMPPRSMKSMCISVAWPAWILGNQPTARIIVASYSQRLSEKHSLDTRCVMQSSWYRALFPEIELSKDQNTKYKFQTVQRGYRIATSVGGTLTGEGGDFIIVDDPLSSAQALSETLRKRATNWFDQTLVTRLNDRKKGVIVLVMHRLHQEDLTGHLLSKPKNIWHHICLPMISENKQVIYSIKKPIPPVPIIRVAQHCATRRLYNKPASPVRILYSREEGQLLYPLDGGKEEVEIIKAELGSYAFAAQYQQNPLPLSSGIIKPEWLKRYKKFPDNLSHITQSWDTAVSTSNMSNFSVCTTWAKIDNKFYLLDVYRAKLEYPKLKEQVLSLAARWTPHAILIEAKTSGQQLVQELKTNSDLPIIEIVPHDDKLTRFHQIVPIIESGKVFLPHQAVWLNDFEYEILMFPETRHDDQVDSTVQYLQWVRNSTSRVAVIRAL
>NC_021089.1|WP_015589397.1|1108395_1109346_+|complex-I-NDUFA9-subunit-family-protein
MTKRVIIFGGTGFIGKHIVRRLAAEGYLIKIFTRNQEKAACLKLCGNLGQISIFKGDFFDEKSVLDGMEECDVAINLVGILYEAKKHDFYAVHVKIAERIAKAAKMKNVPMMIHFSAMGIENSKLSKYAKSKLEGEKAVTSAFQEAIIIRPSLVFGKEDNFFNKFARLATILPFLPLIGNGTTKFQPICVTDLAEVVYRIISFNKQDKKIYNMGGPKVYSFKSLLKFILNVTNRKCLLVNVSFPMAKLIAFFLENKIISMLLKPITGDTNPMLTQDQVKVMMNSSIEKSVDLETMKVRPLAIENVVPEYLKIYRKY
>NC_021089.1|WP_015589396.1|1106815_1108345_+|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase
MFKWNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIKKGDLFIALKGRNFDGHNFLHEAFLKGAVAAIVSEGKYKNFPLIIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGKTTTKDMLHTVLSQYGVSHANEGNLNNNIGLPLTILKAPKNCQYLILEMGMNKAGEIKELSKISNPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYLSSHANRNVISFGKDKNAEVCLLNLIRNDESSVISALSSVIPVLDYLDPGSSIANEHIRRLYNKDWIPASRAGMTSNRVANRLSLKIRLSDNQIINCNLRVQGEHFAYSLLAVAAVVQSLGLDLSKLPLALKNFSVAKGRGNIHKIKYNRKYIHLIDDSYNASPASMKTAIKTLSTYSNQRKVALLGDMLELGDESIEFHTDLVKIITENNIDKVYTVGKFMLELHELLPDNIRGTHFNDSNQLKSDLANIIQNNDAILVKGSRGMKMDLIVREFVIKY
>NC_021089.1|WP_015589395.1|1105852_1106632_-|hypothetical-protein
MLTRENEKSTSILAKVGNAASGVGSFLGRGVKVLVKGAIYPIWPKNWFKSWDEMRHDIKNGGRSIIGNPHEEYDPPIKTTQASKDLGVQITEQKKGTGKVSFLASRTLTGDIPYLSPEQLDKIKKDLPNVTIFREENKIVIEVDVKKIIEDIKTDSKNKGKSPEEIKKLALQGIADSINGDLKKLAGITGGEFKIHTDLKLLNGIAEKLYKEYDNQKQSSDKVVKSDVGQPSETIASGEKKWAQEAIKPGKSQSCGMQK
>NC_021089.1|WP_006279579.1|1105578_1105836_-|hypothetical-protein
MSEAKKIEERHHSLTVPGDMYHLQPGVITGKRVSGIEPFLKEQQDMVKVRELVSSLNLEDASGEAIKPLSTPNVEKNEERGKGRS
>NC_021089.1|WP_015589394.1|1105206_1105575_-|HIT-domain-containing-protein
MSNEVYDSDNIFAQILRGELPCEKVHENENVLAFHDKYPDAPVHILVIPKNQYISYDDFILKAPEEEIADFFKTVREIAHKYNLEKTGYRLVTNYGENGEQVVPHFHVHILGGKKLGKHVNS
>NC_021089.1|WP_006279576.1|1104834_1105188_-|NADH-quinone-oxidoreductase-subunit-A
MSEYLTIVIFICVSIVVSFALGILPMFLAVSKPDGEKLSTYECGFNPLSSARKNFDIKFYLVSILFIIFDLEIAFLFPWAVSLSKISYGGFWSMMVFLAILTIGFIYEWCKGALEWE
>NC_021089.1|WP_006279574.1|1104324_1104831_-|NADH-quinone-oxidoreductase-subunit-B
MTNQILSNDDWGRYKKEGFLVTKFGDLTDYVMNWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIMFRASPRQSDVMIVAGTLTNKMAAALRKVYDQMADPKYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGMLCLQNKIKRTRNG
>NC_021089.1|WP_007548576.1|1103759_1104332_-|NADH-quinone-oxidoreductase-subunit-C
MDKTAKYIQKKTKCECIQKDDGIIVIYSTLDEIEKHLFFLRDDEKCRFELLVDIFGVDYPNREKRFELIYNLLSIVHNIRVHIKLQLCESDMPPSVAKIFSTALWFEREVFDMYGIEFSDHPDLRRILTDYGFKGHPMLKDFPLTGYEEVRYDIETKKVVYNPIDLPQDFRMFDSLSPWEGKTIKVNTKE
>NC_021089.1|WP_007548577.1|1102805_1103756_-|malate-dehydrogenase
MTVQRKKISLIGAGNIGGTLTHMIALRELGDVVLLDISDGIPQGKALDIAESSPIDGFNVNITGTNRYEDIKNSDAIIITAGIARKPGMSRDDLLQTNAKVMKEVGENIKKYSPNAFVIVVTNPLDAMVSVVHKFSNLPTNMIVGMAGVLDSSRFRYFLASELNISVEDISAFVLGGHGDTMVPLINCASVAGVPLTQIIDMGLITQKKVDEIVERTRNGGKEIVDLLKSGSAYYAPASSAICMLESYLKDKRRILPCAAYLNGEYGVEELFIGVPVIIGKNGIEKILEVKMNDSEQEMFNKSVNSVRELVKSLGS
>NC_021089.1|WP_015589399.1|1112237_1114688_+|type-I-DNA-topoisomerase
MALLIVESPAKAKTIGKYLSKEFKVAASFGHVRDLPAKNGSVDPDNDFAIKYETIEKAEKYIKELVKAASKTSDIYLATDPDREGEAMAWHVIETLKEKKAISNENNIYRVVFNEITKRAVQEAIKNPREINMDLVRAQQARRALDYLVGFSLSPLLWTKLSGSKSAGRVQSVALKIICEREDEISKFITQEYWSIKAEMQNSKDEAFFAMLSHYDNKKLEKFDIKNEEEAKNLVREIESRQYAVSTVERKQVKRNPLPPFITSSLQQDAVNKLYFNVKSVMRIAQNLYEGIDIGGETVGLITYMRTDGFHIADEAINSIRGSIKSLYGDKYLPQSPRKYVKKVKNAQEAHEAIRPTDINRTPGSIKDYLTPEQFKLYDLIWKRTIASQMESAIFDQVVVEISSTDQKVILRASGSSIFFDGFYRVYQDNIEAENEGLLPAMKEGEACKLISVEPKQHFTQPPPRYSEASIVKKMEEIGIGRPSTYATIISVLQDREYVSLDSKRFIPSSRGKIVTIFLETFFQRCVEYDFTAQMEEKLDLISNGHADWKKELGHFWVPFFGHVNSVKQMTHDEVFSGIHDLVIDWFCSEEGKKEVNTKCPACSDGILKLNFGKAGVFLGCSNYPECNHTKEITGSNDNSEYPKSLGIDDITNQEVMIKKGPFGLYLEFNNELKKKKTVSIPKDINVNEIDLSTATQLLSLPKVIGEHPETGKEVKIGLGRFGYYIFYDGRYFSLKKSSKEVLNRELSEVVQIIANSPCKELKSLGVNEKGKEVFICNGRYGFYIKCGKTNVALGKSADIESIDLEKALELIKNKK
>NC_021089.1|WP_015589400.1|1114745_1115804_+|hypothetical-protein
MIFYTQGDTPALCRLDYTDVSKLVGIPNITRLDLTECKISVEVARELAKLINLTSLHLGKCKISVEVARELAKLINLTSLHLAGCKISVGVAKELTKLTNLTSLHLGQCKISVGVAKELTKLTNLTSLHLGQCKISVGVAKELTKLTNLTSLHLAGCEISVEIVKELAKLKNLTSLHLAGCEISVEIVKELAKLKNLTSLHLAGCNIGVEVAKELTKLTNLTSLNLIGCKISNEVAKELDKLKKNLPSLNIIGYKISGKGANVKLQDEVSNSQEKLKSSSKYYICGATVGLVIGLVAAYCLGAAALTPVGVSVAAFIASAVVGALLGAGVGYAVSTYLESTELNNMQPRRSC
>NC_021089.1|WP_015589401.1|1115845_1116652_-|rhodanese-related-sulfurtransferase
MSFVIATFYHFVELSNYYDMKDEIKATCNNVELKGTILLAEEGVNATISGERNAIDKIFDFLRSDYRLRDLTWKESAAEYQPFSKMKVKLKREIVNLGVSNLDISLKGKYVDPEHWDDFTSQPDVLVIDTRNEYEVKLGKFKNAINPHTQCFREFPQWTESFSESKDLKVAMYCTGGIRCEKSTAYMKNLGFNDVYHLKGGILSYLEKTHNKNDNWEGECFVFDDRIAVDNSLTPSNTIKCILCSNQVSTDKLKSVPRGQVVCFNCKL
>NC_021089.1|WP_015589402.1|1116781_1118380_+|iron-ABC-transporter-permease
MFLRVFKNIFLFLVSILFVCPILSLISILFTDTANSGWVISTLFPEYILSTLILMIGVGGISFIFGVIPAWLTTFFSFPGSKIFEIALFFPISIPGYIVAFVYVNTLEFSGPVQSSLRDILEWSKGDYWFPEIKSLGGGILVMGFSLYPYVYMLVRSSLKNVSNSVTIASTLGFSSLKSLFSVIIPSIRPSIIAGLSLVLMEVITDFGTPQFLAIDTFTTGIYRTWFLLHDKYSTTVLAVAELIFVVILIAIEKKLQKKGISYSSINTNSDYHNKRSISGAIPLIFAYLMCVLPILIGFILPMIPLIYWSIEKGFFIYEARFYNIIANSISLSFITALISISIAIMIGYTARKNKVINNIARLISLGYAIPNAIIAISIIIFLSRISSFITQYVVEISLVGTIGALVYSYLFRFFAISFKAVESGLKKTPNEIEWTAYTMGHGPISTCLNVHIPLIKKSILSGFLLVFMDTIKELTATLIIRPFNFETISTRIYELVSDERYREAAPFSLIIVIIGLISTITLFTLDDKDKK
>NC_021089.1|WP_015589403.1|1118390_1119284_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MALSKFLDPRNDLCFKKIFGTEKNKNILTHFLNDILGFTEINAIQEVEFLSTIMDPEVASDKQSIVDVLCKDSHGNRYIAEMQLARDKGFEKRAQLYAAKAYSRQLDKSGNYIDLKKVFFIAISNCNLLPEEVDYISTHNIRDIKTNGHYLKDFQFVFIELPKFAKNKVEQLESIVERWCFFFKYAEETTEEDLKEIAEKAPIIKLAYDELDKFRWNEKDLVAYEERIMDLRKEEAILEYRLDLAEEKGIQKGIEKGKIEGKIEVAKAMLANNVDVNTIVKFTGLSISEIEELSGNL
>NC_021089.1|WP_174516854.1|1119518_1119920_-|Co2+/Mg2+-efflux-protein-ApaG
MLEYTLTTNFVEVTVLPIYIEEQSIPYENCYVWMYNVKIKNKSQSTIQLLSRHWQIIDYKGKVNEIAGVGVIGEQPVIKSGEVFKYTSGTYLNAPSGIMQGKYEFLNEESIKIFEVMIPPFSLDSPYVKTRPH
>NC_021089.1|WP_015589405.1|1120019_1121084_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MNEPDALSKKVIGIIGGGQLGKMTAIAATKLGQKTHVFASAKDDPACSVADDFTIADFSDKKALESFAQSVDLVTIESENIPCSAINIDVNFYPGKKALHIAQNRLREKDFIRSLSIKTAEYKSIQNYNELLESSRAFGYPTRLKTTEMGYDGKGQYVLENDSEVKQFASFDWNTEYILEASVDLLKEVSIVVARDKNGKVAFFPIAENYHVDGILDTSTVPAKIDSKLTQEVQRAAKKIANALDVIGILAIEFFVTKDNELLVNELAPRPHNSCHWSLDACNVSQFEQLVRIICGLPMQEVVLRFPCMTKNTIGNDIYDSHKYLSNEKASLTIYGKKEVRDKRKMGHVNIDLS
>NC_021089.1|WP_015589406.1|1121823_1123017_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MCAKKYKIAALIVAAGVGSRCNSTIPKQYIKLAGKSVLFHTIKRFLANQYIDYIRIAINRDHESFYEKAISLITDTKLLSPVYGGENRQSSVKLGLESLQKVNPDFVVIHDACRPFVSDVLIDNLVESMINDQYTGVVPAIEVEDTMSLVSNSFIESTISRGKLRAIQTPQIFNFKELLSCHQSVKEFTDDSSLMVEHKKHVAIIKGEKSNFKLTTKEDINMAKLLFEEPKFRVGAGYDIHKFIKVQNGAESFIKICGVKIEHNMAIEAHSDGDVAIHAIVDAILGALGYGDIGEHFPPSSSEWKDCNSSHFLDFAAKKAKEKGYSVSNLDITIVCEEPKISPYKVEMKKFISKALEIDDEFVNIKATTAEKLGSLGRNEGIAVHASVLLHTNFYWK
>NC_021089.1|WP_015589407.1|1123280_1124345_+|AI-2E-family-transporter
MQKRHITICFILLFIIGMLFLMRPMIFPCLISIIIAYLFNPLVVKFEKYRIPRSCSVIFIILILLIAFILVITFVLPIIYVQITSILNFLVSKVPSLKLKVIPSVLEFLNIKIEDSLFDHLSKNLAENYSNYVSYFMNALDIASNFIIQVLSSSFNTVPLMVITPVVFFYILRDWPLIIEKANKLIPIPYRGKIADYFSKVDFIISNYLKGQVNVCIVMMVFYSVSLSIIGLEHSIVIGILSGMLTFIPYVGPLLYTIIGFLSAITQFSGWFESAAVLLLFGVGQLIDSNILVPLLIGKKVHIHPTVIILGITICASYFGFTGILLFIPIIAMFNVSVEYAINKYFKSELYKNG
>NC_021089.1|WP_006280257.1|1124474_1125110_+|chromosomal-DNA-replication-initiator-DnaA
MQLNLFNNNQADYSRQNYIILDENKHVYNSVVNDLSWKCLILFGPKSSGKTHLAHIWQSINDAIFINVNNFVSEIRYSDAFILEDVQNIKDEAMLLHCYNYMKENDKRLLITSSISPKKLNFKLRDLSSRILSTISVKILPASEELLRIMLIKRFSDKQLKIDLKVINYILARIERSFYSIDKIIEKIDNESIGSNVTVPFISTLLKKDAI

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Crispr_ID: NC_021089_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021089_16

1121186-1121292

Orphan

Consensus_repeat	Method
CCGCTGCTTGTTAGCGGGATCTCATTTTACTTTATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021089_16

>merge|NC_021089|16|1121186-1121292|CRISPRCasFinder
CCGCTGCTTGTTAGCGGGATCTCATTTTACTTTATGAGGGTGTCATCCGAGTAGCCCCTTTCTCGTCATCCCGCTGCTTGTTAGCGGGATCTCATTTCACTTTATGA

>NC_021089|16|15|1121186-1121292|CRISPRCasFinder
CCGCTGCTTGTTAGCGGGATCTCATTTTACTTTATGA	GGGTGTCATCCGAGTAGCCCCTTTCTCGTCATC
CCGCTGCTTGTTAGCGGGATCTCATTTCACTTTATGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_021089.1\|WP_015589408.1\|1125475_1126462_+\|tyrosine-recombinase	unknown	unknown	gnl\|CDD\|274043
NC_021089.1\|WP_015589403.1\|1118390_1119284_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NC_021089.1\|WP_010963063.1\|1126517_1127243_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NC_021089.1\|WP_015589410.1\|1131340_1132867_+\|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|227136
NC_021089.1\|WP_015589400.1\|1114745_1115804_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275380
NC_021089.1\|WP_015589409.1\|1127644_1128895_+\|citrate-synthase	unknown	unknown	gnl\|CDD\|99867
NC_021089.1\|WP_015589399.1\|1112237_1114688_+\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|235840
NC_021089.1\|WP_007549057.1\|1125315_1125486_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589397.1\|1108395_1109346_+\|complex-I-NDUFA9-subunit-family-protein	unknown	unknown	gnl\|CDD\|187579
NC_021089.1\|WP_015589405.1\|1120019_1121084_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NC_021089.1\|WP_006280257.1\|1124474_1125110_+\|chromosomal-DNA-replication-initiator-DnaA	unknown	unknown	gnl\|CDD\|168630
NC_021089.1\|WP_012673338.1\|1127294_1127564_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NC_021089.1\|WP_015589406.1\|1121823_1123017_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|236492
NC_021089.1\|WP_015589407.1\|1123280_1124345_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NC_021089.1\|WP_174516854.1\|1119518_1119920_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NC_021089.1\|WP_015589398.1\|1110394_1111846_+\|phage-terminase-large-subunit	unknown	unknown	gnl\|CDD\|227697
NC_021089.1\|WP_015589402.1\|1116781_1118380_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
NC_021089.1\|WP_015589396.1\|1106815_1108345_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	unknown	unknown	gnl\|CDD\|223841
NC_021089.1\|WP_015589411.1\|1133240_1134056_+\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	unknown	unknown	gnl\|CDD\|234899
NC_021089.1\|WP_015589401.1\|1115845_1116652_-\|rhodanese-related-sulfurtransferase	unknown	unknown	gnl\|CDD\|223982

Protein	Function_ID	Function_description	E-value
NC_021089.1\|WP_015589403.1\|1118390_1119284_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	8.56008e-45
NC_021089.1\|WP_010963063.1\|1126517_1127243_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	7.82589e-35
NC_021089.1\|WP_015589410.1\|1131340_1132867_+\|acyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
NC_021089.1\|WP_015589400.1\|1114745_1115804_+\|hypothetical-protein	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	5.08456e-40
NC_021089.1\|WP_015589409.1\|1127644_1128895_+\|citrate-synthase	gnl\|CDD\|99867	cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some type II CSs including EcCS are strongly and specifically inhibited by NADH through an allosteric mechanism. Included in this group is an NADH-insensitive type II Acetobacter acetii CS which has retained many of the residues used by EcCS for NADH binding.	0
NC_021089.1\|WP_015589399.1\|1112237_1114688_+\|type-I-DNA-topoisomerase	gnl\|CDD\|235840	PRK06599, PRK06599, DNA topoisomerase I; Validated.	0
NC_021089.1\|WP_015589408.1\|1125475_1126462_+\|tyrosine-recombinase	gnl\|CDD\|274043	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerD, one of two closely related chromosomal proteins along with XerC (TIGR02224). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and with homologs of XerD on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerD, as some apparent XerD examples score below the trusted and noise cutoff scores. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	9.13237e-124
NC_021089.1\|WP_015589397.1\|1108395_1109346_+\|complex-I-NDUFA9-subunit-family-protein	gnl\|CDD\|187579	cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs. This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.63604e-98
NC_021089.1\|WP_015589405.1\|1120019_1121084_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	2.18672e-162
NC_021089.1\|WP_006280257.1\|1124474_1125110_+\|chromosomal-DNA-replication-initiator-DnaA	gnl\|CDD\|168630	PRK06620, PRK06620, hypothetical protein; Validated.	2.21927e-33
NC_021089.1\|WP_012673338.1\|1127294_1127564_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	2.54619e-25
NC_021089.1\|WP_015589406.1\|1121823_1123017_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|236492	PRK09382, ispDF, bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional.	2.13285e-138
NC_021089.1\|WP_015589407.1\|1123280_1124345_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	1.74619e-40
NC_021089.1\|WP_174516854.1\|1119518_1119920_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	1.55795e-64
NC_021089.1\|WP_015589398.1\|1110394_1111846_+\|phage-terminase-large-subunit	gnl\|CDD\|227697	COG5410, COG5410, Uncharacterized protein conserved in bacteria [Function unknown].	9.38028e-60
NC_021089.1\|WP_015589402.1\|1116781_1118380_+\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	1.29647e-85
NC_021089.1\|WP_015589396.1\|1106815_1108345_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	gnl\|CDD\|223841	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane].	3.43988e-133
NC_021089.1\|WP_015589411.1\|1133240_1134056_+\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	5.77218e-134
NC_021089.1\|WP_015589401.1\|1115845_1116652_-\|rhodanese-related-sulfurtransferase	gnl\|CDD\|223982	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only].	1.10227e-112

>NC_021089.1|WP_015589405.1|1120019_1121084_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MNEPDALSKKVIGIIGGGQLGKMTAIAATKLGQKTHVFASAKDDPACSVADDFTIADFSDKKALESFAQSVDLVTIESENIPCSAINIDVNFYPGKKALHIAQNRLREKDFIRSLSIKTAEYKSIQNYNELLESSRAFGYPTRLKTTEMGYDGKGQYVLENDSEVKQFASFDWNTEYILEASVDLLKEVSIVVARDKNGKVAFFPIAENYHVDGILDTSTVPAKIDSKLTQEVQRAAKKIANALDVIGILAIEFFVTKDNELLVNELAPRPHNSCHWSLDACNVSQFEQLVRIICGLPMQEVVLRFPCMTKNTIGNDIYDSHKYLSNEKASLTIYGKKEVRDKRKMGHVNIDLS
>NC_021089.1|WP_174516854.1|1119518_1119920_-|Co2+/Mg2+-efflux-protein-ApaG
MLEYTLTTNFVEVTVLPIYIEEQSIPYENCYVWMYNVKIKNKSQSTIQLLSRHWQIIDYKGKVNEIAGVGVIGEQPVIKSGEVFKYTSGTYLNAPSGIMQGKYEFLNEESIKIFEVMIPPFSLDSPYVKTRPH
>NC_021089.1|WP_015589403.1|1118390_1119284_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MALSKFLDPRNDLCFKKIFGTEKNKNILTHFLNDILGFTEINAIQEVEFLSTIMDPEVASDKQSIVDVLCKDSHGNRYIAEMQLARDKGFEKRAQLYAAKAYSRQLDKSGNYIDLKKVFFIAISNCNLLPEEVDYISTHNIRDIKTNGHYLKDFQFVFIELPKFAKNKVEQLESIVERWCFFFKYAEETTEEDLKEIAEKAPIIKLAYDELDKFRWNEKDLVAYEERIMDLRKEEAILEYRLDLAEEKGIQKGIEKGKIEGKIEVAKAMLANNVDVNTIVKFTGLSISEIEELSGNL
>NC_021089.1|WP_015589402.1|1116781_1118380_+|iron-ABC-transporter-permease
MFLRVFKNIFLFLVSILFVCPILSLISILFTDTANSGWVISTLFPEYILSTLILMIGVGGISFIFGVIPAWLTTFFSFPGSKIFEIALFFPISIPGYIVAFVYVNTLEFSGPVQSSLRDILEWSKGDYWFPEIKSLGGGILVMGFSLYPYVYMLVRSSLKNVSNSVTIASTLGFSSLKSLFSVIIPSIRPSIIAGLSLVLMEVITDFGTPQFLAIDTFTTGIYRTWFLLHDKYSTTVLAVAELIFVVILIAIEKKLQKKGISYSSINTNSDYHNKRSISGAIPLIFAYLMCVLPILIGFILPMIPLIYWSIEKGFFIYEARFYNIIANSISLSFITALISISIAIMIGYTARKNKVINNIARLISLGYAIPNAIIAISIIIFLSRISSFITQYVVEISLVGTIGALVYSYLFRFFAISFKAVESGLKKTPNEIEWTAYTMGHGPISTCLNVHIPLIKKSILSGFLLVFMDTIKELTATLIIRPFNFETISTRIYELVSDERYREAAPFSLIIVIIGLISTITLFTLDDKDKK
>NC_021089.1|WP_015589401.1|1115845_1116652_-|rhodanese-related-sulfurtransferase
MSFVIATFYHFVELSNYYDMKDEIKATCNNVELKGTILLAEEGVNATISGERNAIDKIFDFLRSDYRLRDLTWKESAAEYQPFSKMKVKLKREIVNLGVSNLDISLKGKYVDPEHWDDFTSQPDVLVIDTRNEYEVKLGKFKNAINPHTQCFREFPQWTESFSESKDLKVAMYCTGGIRCEKSTAYMKNLGFNDVYHLKGGILSYLEKTHNKNDNWEGECFVFDDRIAVDNSLTPSNTIKCILCSNQVSTDKLKSVPRGQVVCFNCKL
>NC_021089.1|WP_015589400.1|1114745_1115804_+|hypothetical-protein
MIFYTQGDTPALCRLDYTDVSKLVGIPNITRLDLTECKISVEVARELAKLINLTSLHLGKCKISVEVARELAKLINLTSLHLAGCKISVGVAKELTKLTNLTSLHLGQCKISVGVAKELTKLTNLTSLHLGQCKISVGVAKELTKLTNLTSLHLAGCEISVEIVKELAKLKNLTSLHLAGCEISVEIVKELAKLKNLTSLHLAGCNIGVEVAKELTKLTNLTSLNLIGCKISNEVAKELDKLKKNLPSLNIIGYKISGKGANVKLQDEVSNSQEKLKSSSKYYICGATVGLVIGLVAAYCLGAAALTPVGVSVAAFIASAVVGALLGAGVGYAVSTYLESTELNNMQPRRSC
>NC_021089.1|WP_015589399.1|1112237_1114688_+|type-I-DNA-topoisomerase
MALLIVESPAKAKTIGKYLSKEFKVAASFGHVRDLPAKNGSVDPDNDFAIKYETIEKAEKYIKELVKAASKTSDIYLATDPDREGEAMAWHVIETLKEKKAISNENNIYRVVFNEITKRAVQEAIKNPREINMDLVRAQQARRALDYLVGFSLSPLLWTKLSGSKSAGRVQSVALKIICEREDEISKFITQEYWSIKAEMQNSKDEAFFAMLSHYDNKKLEKFDIKNEEEAKNLVREIESRQYAVSTVERKQVKRNPLPPFITSSLQQDAVNKLYFNVKSVMRIAQNLYEGIDIGGETVGLITYMRTDGFHIADEAINSIRGSIKSLYGDKYLPQSPRKYVKKVKNAQEAHEAIRPTDINRTPGSIKDYLTPEQFKLYDLIWKRTIASQMESAIFDQVVVEISSTDQKVILRASGSSIFFDGFYRVYQDNIEAENEGLLPAMKEGEACKLISVEPKQHFTQPPPRYSEASIVKKMEEIGIGRPSTYATIISVLQDREYVSLDSKRFIPSSRGKIVTIFLETFFQRCVEYDFTAQMEEKLDLISNGHADWKKELGHFWVPFFGHVNSVKQMTHDEVFSGIHDLVIDWFCSEEGKKEVNTKCPACSDGILKLNFGKAGVFLGCSNYPECNHTKEITGSNDNSEYPKSLGIDDITNQEVMIKKGPFGLYLEFNNELKKKKTVSIPKDINVNEIDLSTATQLLSLPKVIGEHPETGKEVKIGLGRFGYYIFYDGRYFSLKKSSKEVLNRELSEVVQIIANSPCKELKSLGVNEKGKEVFICNGRYGFYIKCGKTNVALGKSADIESIDLEKALELIKNKK
>NC_021089.1|WP_015589398.1|1110394_1111846_+|phage-terminase-large-subunit
MNFLKFIELCFQTVVPGCEYNDYQYIKVIADRLEAASAGEVKRIIFNMPPRSMKSMCISVAWPAWILGNQPTARIIVASYSQRLSEKHSLDTRCVMQSSWYRALFPEIELSKDQNTKYKFQTVQRGYRIATSVGGTLTGEGGDFIIVDDPLSSAQALSETLRKRATNWFDQTLVTRLNDRKKGVIVLVMHRLHQEDLTGHLLSKPKNIWHHICLPMISENKQVIYSIKKPIPPVPIIRVAQHCATRRLYNKPASPVRILYSREEGQLLYPLDGGKEEVEIIKAELGSYAFAAQYQQNPLPLSSGIIKPEWLKRYKKFPDNLSHITQSWDTAVSTSNMSNFSVCTTWAKIDNKFYLLDVYRAKLEYPKLKEQVLSLAARWTPHAILIEAKTSGQQLVQELKTNSDLPIIEIVPHDDKLTRFHQIVPIIESGKVFLPHQAVWLNDFEYEILMFPETRHDDQVDSTVQYLQWVRNSTSRVAVIRAL
>NC_021089.1|WP_015589397.1|1108395_1109346_+|complex-I-NDUFA9-subunit-family-protein
MTKRVIIFGGTGFIGKHIVRRLAAEGYLIKIFTRNQEKAACLKLCGNLGQISIFKGDFFDEKSVLDGMEECDVAINLVGILYEAKKHDFYAVHVKIAERIAKAAKMKNVPMMIHFSAMGIENSKLSKYAKSKLEGEKAVTSAFQEAIIIRPSLVFGKEDNFFNKFARLATILPFLPLIGNGTTKFQPICVTDLAEVVYRIISFNKQDKKIYNMGGPKVYSFKSLLKFILNVTNRKCLLVNVSFPMAKLIAFFLENKIISMLLKPITGDTNPMLTQDQVKVMMNSSIEKSVDLETMKVRPLAIENVVPEYLKIYRKY
>NC_021089.1|WP_015589396.1|1106815_1108345_+|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase
MFKWNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIKKGDLFIALKGRNFDGHNFLHEAFLKGAVAAIVSEGKYKNFPLIIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGKTTTKDMLHTVLSQYGVSHANEGNLNNNIGLPLTILKAPKNCQYLILEMGMNKAGEIKELSKISNPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYLSSHANRNVISFGKDKNAEVCLLNLIRNDESSVISALSSVIPVLDYLDPGSSIANEHIRRLYNKDWIPASRAGMTSNRVANRLSLKIRLSDNQIINCNLRVQGEHFAYSLLAVAAVVQSLGLDLSKLPLALKNFSVAKGRGNIHKIKYNRKYIHLIDDSYNASPASMKTAIKTLSTYSNQRKVALLGDMLELGDESIEFHTDLVKIITENNIDKVYTVGKFMLELHELLPDNIRGTHFNDSNQLKSDLANIIQNNDAILVKGSRGMKMDLIVREFVIKY
>NC_021089.1|WP_015589406.1|1121823_1123017_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MCAKKYKIAALIVAAGVGSRCNSTIPKQYIKLAGKSVLFHTIKRFLANQYIDYIRIAINRDHESFYEKAISLITDTKLLSPVYGGENRQSSVKLGLESLQKVNPDFVVIHDACRPFVSDVLIDNLVESMINDQYTGVVPAIEVEDTMSLVSNSFIESTISRGKLRAIQTPQIFNFKELLSCHQSVKEFTDDSSLMVEHKKHVAIIKGEKSNFKLTTKEDINMAKLLFEEPKFRVGAGYDIHKFIKVQNGAESFIKICGVKIEHNMAIEAHSDGDVAIHAIVDAILGALGYGDIGEHFPPSSSEWKDCNSSHFLDFAAKKAKEKGYSVSNLDITIVCEEPKISPYKVEMKKFISKALEIDDEFVNIKATTAEKLGSLGRNEGIAVHASVLLHTNFYWK
>NC_021089.1|WP_015589407.1|1123280_1124345_+|AI-2E-family-transporter
MQKRHITICFILLFIIGMLFLMRPMIFPCLISIIIAYLFNPLVVKFEKYRIPRSCSVIFIILILLIAFILVITFVLPIIYVQITSILNFLVSKVPSLKLKVIPSVLEFLNIKIEDSLFDHLSKNLAENYSNYVSYFMNALDIASNFIIQVLSSSFNTVPLMVITPVVFFYILRDWPLIIEKANKLIPIPYRGKIADYFSKVDFIISNYLKGQVNVCIVMMVFYSVSLSIIGLEHSIVIGILSGMLTFIPYVGPLLYTIIGFLSAITQFSGWFESAAVLLLFGVGQLIDSNILVPLLIGKKVHIHPTVIILGITICASYFGFTGILLFIPIIAMFNVSVEYAINKYFKSELYKNG
>NC_021089.1|WP_006280257.1|1124474_1125110_+|chromosomal-DNA-replication-initiator-DnaA
MQLNLFNNNQADYSRQNYIILDENKHVYNSVVNDLSWKCLILFGPKSSGKTHLAHIWQSINDAIFINVNNFVSEIRYSDAFILEDVQNIKDEAMLLHCYNYMKENDKRLLITSSISPKKLNFKLRDLSSRILSTISVKILPASEELLRIMLIKRFSDKQLKIDLKVINYILARIERSFYSIDKIIEKIDNESIGSNVTVPFISTLLKKDAI
>NC_021089.1|WP_007549057.1|1125315_1125486_+|hypothetical-protein
MIRVRLNLRKRLKQKFVMFTLLINALFVSYFLIRNTGNTSNQIIAKEINIGTDNEK
>NC_021089.1|WP_015589408.1|1125475_1126462_+|tyrosine-recombinase
MKNKQSQNKKENLYITYYIDALASERFAAQNTLESYRSDLHQFEEFLLESGTTLVGVNKTNIKDYVKSLCTQKKYKSSSISRKISAMKNFYKCLFNDGIIDFNPAPANDAELKNPKVSRPLPKYLSVEEIFLLMDTVRKSASESNKEISSKRLCAILDILYSSGMRVSELISMKLCEVSHLINSNNKECYIIIKGKSGRERQILFNEQALQSLRNYLSVRDNLISKEKESDWLFPGDKPNKPITRQRLGQLMKELARKCNIDENEISPHVIRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLKDKLADSHPITQMINN
>NC_021089.1|WP_010963063.1|1126517_1127243_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MISSLLFNFFLILWEVFYTFITLPVIFFSECVITIFLVCSVRVVLFMLRLLCGIKYEVRGMENIPKQPFIIASKHQSPFETFIFILLFRKAVFILKRELKWIPFIGLHLIALKMIFINRSDGISSIRHIIKLAKMRIKENRSIIIFPEGTRTTINQNIKYQPGIAALYSVLSVPVLPVALNTGLFWPKSILSLRKNPGKAVIEILPPIYPGLNKNEFLQSLEKIIEERSSRLTIGKTDIAN
>NC_021089.1|WP_012673338.1|1127294_1127564_+|30S-ribosomal-protein-S20
MANHKSAKKMIKVIAKRTLINKMRKSKTRTSIRKLVDIIKSGDKENVVLAFRNAESNLHKCVNKGVIHRNTAARKISRLNAKVKALMTA
>NC_021089.1|WP_015589409.1|1127644_1128895_+|citrate-synthase
MDKKVLLELSNGLKIELPVLSGTTGPDVLNIKDLYKMTGLFTYDPGFVSTASCSSTITFIDGDEGVLKYRGHNIADLAENNNFTAVIYLLLYGELPSSEQHKKFLLKIQESSKVSEQVTNVIKAFPKTAHPMSILVACFASLSASYHEKHGNNVNGEDLDFGISAIAQVSTIIAMIYRHINNQEFINANNELSYSENFLKMIFGDAVDNDKSALFAKALDKIFTLHADHEQNASTAAVRLVGSAGSNLFASLSAGVATLWGPAHGGANEAVINMLKEIEQSGDIDKFIEKAKDDKDPFKLMGFGHRVYKNYDPRARILKGACHEVLSKLEQNNELLKIAKKLEEIALKDEYFIVRKLYPNVDFYSGIIMNAIDIPSNMFTPIFALARTTGWVTQWYEMINDKETKICRPRQLYFGK
>NC_021089.1|WP_015589410.1|1131340_1132867_+|acyl-CoA-carboxylase-subunit-beta
MQDFKILENLKTKALEAEKGGGSDRITKQHEKGKLTARERLSILLDESSFAEYDKFVKHHANDFGMQNANFLGDGVVIGHGTIYGRKVFVYSQDFTVFGGSLGASHAKKICKIMDMAINARVPIIGLNDSGGARIQEGVNSLAGYGEIFQRNVNASGVIPQISLIMGPCAGGAVYSPALTDFTFMVKNSSYMFITGPDVVKKVTYEDVSFEDLGGAKIHTSKTGVADFAFNNDVEMLLKMREFFTFLPANNQESPKSAPICNDVDDIDESLNTLIPTNPNTPYDMYELIEKVCDERNFFELKPDFARNIITGFGRIGGNTVGIVANQPMHLAGCLDIDSSRKAARFVRFCDAFNIPIITLIDVPGFLPGTNQEYNNIIQHGAKLLYAYAEATVPKISLITRKAYGGAYIVMNSKHLKGDINYAWPTAEIAVMGPESAVEIIFRHEKDQQTLIKEYKEKFANPFFAASYGYIDDIIVPSKTRYHFCKALELLKNKKVERIWKKHDNLPL
>NC_021089.1|WP_015589411.1|1133240_1134056_+|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase
MPELPEVEVISNFLLDKIKNKQISNVIVNNWNLRAPITKNIDDMLKGKVIRNIKRRGKYTIWNTDGSVAVIIHLGMSGKLIYADHDQMRNKHDHVVFLFSDNTSIIFNDPRRFGLVIVLNKEQETDFFSDFGIEPLTDEFSGDYLQELLKNKKVNIKSALMDNKSIVGVGNIYASESLFRACISPLRSAKNLTYRECEKLAAEIKNTLSDAIAAGGSTLKDYAQPSGSAGYFQNNFYVYGKVQKPCKICNNIITLIRQNGRSTYFCNACQN

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Crispr_ID: NC_021089_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021089_17

1232689-1232796

Orphan

Consensus_repeat	Method
CGTCATCCCGCTGCTTGTTAGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021089_17

>merge|NC_021089|17|1232689-1232796|CRISPRCasFinder
CGTCATCCCGCTGCTTGTTAGCGGCTAAGAGATACCGCGAATGAATCGCGGTATGACGGTTCGCGGCGGCATAAAGATAAGTCTCGTCATCCCGCTGCGTGTTAGCGG

>NC_021089|17|16|1232689-1232796|CRISPRCasFinder
CGTCATCCCGCTGCTTGTTAGCGG	CTAAGAGATACCGCGAATGAATCGCGGTATGACGGTTCGCGGCGGCATAAAGATAAGTCT
CGTCATCCCGCTGCGTGTTAGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_021089.1\|WP_015589468.1\|1222145_1222718_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239267
NC_021089.1\|WP_015589482.1\|1242062_1242992_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
NC_021089.1\|WP_015589477.1\|1237245_1237797_+\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|274270
NC_021089.1\|WP_012673395.1\|1234220_1234736_+\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|179262
NC_021089.1\|WP_015589476.1\|1236641_1237262_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|99789
NC_021089.1\|WP_015589475.1\|1235392_1236538_+\|SurA-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|372652
NC_021089.1\|WP_015589470.1\|1226083_1227379_-\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950
NC_021089.1\|WP_010081889.1\|1227556_1228036_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NC_021089.1\|WP_007548786.1\|1223409_1224078_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_012673393.1\|1224232_1226071_-\|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl\|CDD\|273520
NC_021089.1\|WP_015589474.1\|1232934_1234158_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589471.1\|1228311_1229733_+\|Thermostable-carboxypeptidase-1	unknown	unknown	gnl\|CDD\|376724
NC_021089.1\|WP_041573547.1\|1239012_1239720_+\|isoprenoid-biosynthesis-glyoxalase-ElbB	unknown	unknown	gnl\|CDD\|236980
NC_021089.1\|WP_015589467.1\|1220421_1222140_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|235131
NC_021089.1\|WP_015589481.1\|1240206_1242042_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|223839
NC_021089.1\|WP_041573548.1\|1239895_1240204_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589472.1\|1229756_1230833_+\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NC_021089.1\|WP_015589473.1\|1231035_1232139_+\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NC_021089.1\|WP_015589478.1\|1237841_1238876_-\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589469.1\|1222826_1223417_+\|dTMP-kinase	unknown	unknown	gnl\|CDD\|237574

Protein	Function_ID	Function_description	E-value
NC_021089.1\|WP_015589468.1\|1222145_1222718_-\|thioredoxin-family-protein	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	1.18534e-73
NC_021089.1\|WP_015589473.1\|1231035_1232139_+\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	1.28313e-179
NC_021089.1\|WP_015589482.1\|1242062_1242992_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	4.37981e-158
NC_021089.1\|WP_015589477.1\|1237245_1237797_+\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|274270	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism. [Central intermediary metabolism, One-carbon metabolism].	5.54285e-39
NC_021089.1\|WP_012673395.1\|1234220_1234736_+\|inorganic-diphosphatase	gnl\|CDD\|179262	PRK01250, PRK01250, inorganic diphosphatase.	9.03463e-92
NC_021089.1\|WP_015589470.1\|1226083_1227379_-\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	4.72949e-78
NC_021089.1\|WP_010081889.1\|1227556_1228036_-\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	1.17117e-31
NC_021089.1\|WP_041573547.1\|1239012_1239720_+\|isoprenoid-biosynthesis-glyoxalase-ElbB	gnl\|CDD\|236980	PRK11780, PRK11780, isoprenoid biosynthesis glyoxalase ElbB.	1.14036e-113
NC_021089.1\|WP_012673393.1\|1224232_1226071_-\|ATP-dependent-zinc-metalloprotease-FtsH	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NC_021089.1\|WP_015589476.1\|1236641_1237262_+\|hypothetical-protein	gnl\|CDD\|99789	cd06192, DHOD_e_trans_like, FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.	3.81086e-36
NC_021089.1\|WP_015589471.1\|1228311_1229733_+\|Thermostable-carboxypeptidase-1	gnl\|CDD\|376724	pfam02074, Peptidase_M32, Carboxypeptidase Taq (M32) metallopeptidase.	4.41241e-89
NC_021089.1\|WP_015589467.1\|1220421_1222140_-\|cation:proton-antiporter	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	2.33782e-127
NC_021089.1\|WP_015589481.1\|1240206_1242042_-\|penicillin-binding-protein-2	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	2.70211e-85
NC_021089.1\|WP_015589472.1\|1229756_1230833_+\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NC_021089.1\|WP_015589469.1\|1222826_1223417_+\|dTMP-kinase	gnl\|CDD\|237574	PRK13976, PRK13976, dTMP kinase.	1.36677e-121
NC_021089.1\|WP_015589475.1\|1235392_1236538_+\|SurA-N-terminal-domain-containing-protein	gnl\|CDD\|372652	pfam13624, SurA_N_3, SurA N-terminal domain. This domain is found at the N-terminus of the chaperone SurA. It is a helical domain of unknown function. The C-terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment.	3.38892e-08

>NC_021089.1|WP_015589473.1|1231035_1232139_+|tRNA-2-thiouridine(34)-synthase-MnmA
MLKEFEIEPLLKDKAPHQTKAVVAMSGGVDSSVAAALLYNFGYQVIGVTLQLYGTDGARKGACCAGQDIYDAKRVAESVGFPHYILNYEEIFKKEVIEDFASTYMRGETPIPCVRCNQTVKFRDLLQVTKNLGADVLVTGHYVRRLEKNGEVKLCRSIDKSKDQSYFLFATTQEQLKLLRFPLGGFYKSDIRKLAKYFGLQISEKPDSQDICFVSESYSKTIAKLAPQSVQKGKIVDVNGKVLGEHSGIVNFTVGQRKGLGIAHNEPLYVIKINTENNEVIVGPINVLMQKKILIKELNWLEQPKEGMEVTVKLRSSHAGSLATIHSTDEKNKACVILNDDYFGISPGQACVAYKDEQVIGGGWICS
>NC_021089.1|WP_015589472.1|1229756_1230833_+|rod-shape-determining-protein
MNFVRKLTEKFCSLFTFKGLFASDIAIDLGTANTLVYQKNQGIVLDEPSVVARIKEKGSYVPYAFGKKAKMMLGKTPGEIEAIRPLKDGVIADFKSAEEMLKYFIRSANTKFTVNKPNIIICVPSGSTPVERRAIQDAAESAGANEVFLIEEPMGAAIGAGLPVTEPEGSMIVDIGGGTTEVAIISLGGIVYSRSARVGGDIMDEAIKSYIRENHKLLIGETTAEKIKKSIGSANLPGENNKEGMIIKGRDLVSGMPKEMLLSEYQVAESLIEPVHQIISAIRTALESTPPELSSDIVDKGIILSGGGGLLRNLGKVISETTKLPVRVADDPLCCVALGSGKVLENMDYFGHVLFKQD
>NC_021089.1|WP_015589471.1|1228311_1229733_+|Thermostable-carboxypeptidase-1
MKSYKFLEEVLYRVKNIENTLKVLNQSQLNAEDKVEQMSLLEEIRHEIISHDVIKESLADALDNKKSADAWQLKLIERIHKSNSAVPIDLVKSLSKAKVECQSLWRLNNSEASNLEKLKERFTDLITLIREVASIKSQQLKCSKYDSLLADYDSDITEKNIREVFPKVGKFFSGNVDKIIEKQKKDKVTNIQKVATQKQIELGSSCLQQMGVALHEVRTSYYYPIDYDESDFCYGLFSLLRHSGYAIYQKCLAQNSISSPITRHVMYETQGLFMERMIGTSREFIEFIQPHIKEKFAIKGKTNEKVSSVENLYLIFNEINLSSFLKNADEFSLLAHIMLRTRLEQDIINGTLEVKDLHDAWLEGMKHYKIPVKAENELNTYFQDEYWASGVMGYFPIKIIALIAAVQIFSCVKKNHYESLSAIIKGDFSLLISWLSQNIYSAKCGLELLKKVTGKGLDVECCISYLSGKYNLS
>NC_021089.1|WP_010081889.1|1227556_1228036_-|OmpA-family-protein
MWSRLVIMCCFCLLLTGVSSCPKKGANTTNKINSVVKQIGDKRVFFGYDESSIAEVSADALLDVMEVLQDNPDAKVTLTGHTDNRGSHEYNLALGARRADAAKKFMVSCTPYIENRIKTASKGETEPLVNVKDDSRNSKYEKEHAKNRRVEFSFSGIKK
>NC_021089.1|WP_015589470.1|1226083_1227379_-|tRNA-lysidine(34)-synthetase-TilS
MELELLFQNVVNSFAFYNNQVAVAVSGGVDSIILLHLMNNWAKKNKLPLPIALTVNHGLRSESQKEADFVVSYAKELGAKESFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHKDDQAETFLLRLERGSGVDGLSSMDYKSFLNGIYIFRPLLNFSRSEIEKYAKLHRLKWIEDRSNYDLKYRRTLYRNLLKASDNQEILTERICLTALHMKRAAKALMHYTRLAFNDCVNVHDLGYIEIKLSEFYQLPEEIALRLLLYSIMAIASKHYKPRYNSLIVIFNKILQKDSNVNCTLSGCKIRKHGENILIIRESSKIQEITLNLPLNEPTQWDNRFSCTILGNQECSVIIAPLKKTQKVPEFLKDYNCCPEVFYSLPVVLKDGKVLAYPDVNYNGKNTNDDKVQCIINSTIKQNLVSLISI
>NC_021089.1|WP_012673393.1|1224232_1226071_-|ATP-dependent-zinc-metalloprotease-FtsH
MKKFLEGLLIWLVIIVLISVAYIQFSGNVGKSKTIIPFSEFLTRLEDNDVENIVIKNQSIEGKFRDGSSFNSSGVIYSDLIKNLHDRKVRFSFSTGDSAMNVIGGLLISWVPTFIFIGFLLFFLKQTQAGGNRTISFGKSRARLMTSGKKVTFDDVAGIDEAKEELVEIVDFLKQRQKFQILGGKIPKGCLLIGSPGTGKTLLARAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFDQGKKNAPCIIFIDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESNEGVIIIAATNRPDVLDPALLRPGRFDRQITISLPDINGREKILNTHIKKISIAPDVNVKTVARGTPGFSGADLANLVNESALIAARRNKKIVTMDDFEYARDKVMMGVERRSLIMTEEEKRLTAYHEAGHAMIAVNMPASDPIHKATIIPRGRALGLVMRLPETDRVSLTREKMLADITVAMGGRVAEELIFGYDKVTSGASSDIKQASDLSRAMVTKWGMSDKIGPIYHNREQTIHGSEIISEDTLKLIDEEVKKVVSSCYEKAKDILTKHKKGLDLIAENLLEFETLTGDEIKDILNGKKIVREENEKNEKIKKSSLYES
>NC_021089.1|WP_007548786.1|1223409_1224078_-|hypothetical-protein
MIDIASIGVSTVIDQNYRRKAQLCLSGLFVTVSIATVTWFIFPASQNVLAPFLLPAMFLLFTLSMGYYMFIFSCEEKSLVKNVLGMVEPAESVKRVHCQENIKSLLAEVRSTTKDRFRNVLVNLCFEDRSKAHKLALYVKEIDNIVSSIKNKDLLDHFDQFFTITEVSNKKNRSELMNLARAYKMISEEDPDKIQDFLATQTKSYSYEIMLPEIDNFLSQAR
>NC_021089.1|WP_015589469.1|1222826_1223417_+|dTMP-kinase
MFITFEGIDGSGKTTQSKLLANHFKQIHGENNVVLTREPGGTNFAEKIRGVLLTNNIDPISELLLLISMRREHMKKLILPALAEGKIVICDRFIDSTIAYQGYGLSVDLGLIRDLHKLVEIKCPDITFILDIDVKVGLNRAKDKNKYEEMDVNFYNKVRKGFQEIAIKEPVRCSVITGIETKNDNHVHNEIIDKIT
>NC_021089.1|WP_015589468.1|1222145_1222718_-|thioredoxin-family-protein
MVALNTPKVDFSFTAKDFNLLGVDNKYYTLSDCCGKNGLIVMFICNHCPYVQSIISNLVSDVDQLKKDYQVNTIAIMPNDVNEYPEDSFENMINFAKENKFTFPYLIDSTQKIAKEYGAVCTPDFFGFNSNLNLCYRGRFNNAKKEKVQSYEVGSSDLFQAMKFIAETGNSPIDQKSSIGCSIKWSNSTG
>NC_021089.1|WP_015589467.1|1220421_1222140_-|cation:proton-antiporter
MHSGSQHLFDIIILLSAAVFIVIAFWKMNISPVLGYFVAGAVIGSHGFNLIHSAEAMDNLAEFGVVFLLFIIGLELTFERLIAMRIHVFGFGSLQVIVTMVAIWCIALAFGVNTNIATVIGGGLALSSTAIVLQVLQEKGSQASQVGRLSIAVLLMQDFAVVPLIVLVPLLTGNSEHSLISSLAGSLVQAAIALVLIFITGRLLLRPLFSVIAKMESNEIFISTTLLIVLGAAFITEQFHLSLALGAFVAGLLVAETEYRHSVEHAVLPFKDLFLGLFFMTVGMSINTELLLNKLPLITLLSIILIVLKTSIIYILCRFFGFKSAPAIQAGLLLSQGGEFAFILFRLADELNVLPSEIAQVLMMVTTVTMAFTPLLSGLGDWIANSFSTEKTILDDEAVETDTQDLHNHVIVAGFGRVGYMVTKMLTAEHLSYVVVDIQSKIVKEGKSDSFPIYLGDVTRCEILKSVGIERAQALVISIKNEVTIKKVVSLVAANFPHVNIVIRLPDLSNVEVYRDLGASKIIPETSEIGLQLGGAALSLSGISESGVMSLKSRFRKGNYSMLKDLGSDKDE
>NC_021089.1|WP_015589474.1|1232934_1234158_+|hypothetical-protein
MIKEIEELIKIVGKGNLLETLFIFLGSFQHADLGRFMDHRNHFGLSEFIRKKEEPLDKYFNLKFSLQGLFLIYAQAYQILSENNNLNTKDVIDKIYEVIKGSELNEYINEVVDGRKLDLLNILANPKREPIFKTEEDFENKVLIGLRKLLSEGNTLNKYDREFALNKCVIGCYYSIHNIKVDKDIALLFSIGSYYKELSPSNKTVRREVLEICENQLIENYIVHLASKLHMIGLSSRDKYTIDHENVDRQEKALKMDGLTCPINTKNTLEQLLKNQNSDEFEQLVMSPENIYYSVLPEENEYRPNLITSKKKEKDYKNTVCKLILGMFILSVGLSVADYFLMEQKLLNSIKNVLPQDNLTNLIIGAVLTIVIVYALFQLLKPPQEPPLSTVNKMMNENLGPLHAKQA
>NC_021089.1|WP_012673395.1|1234220_1234736_+|inorganic-diphosphatase
MDLSKITAGPNAVNVVIEISANAEPVKYEFNKEFGLLQVDRFLSTSMTYPCNYGFIPNTCAGDGDPVDVLVLTQFPLASSVLISVRPIGALLTKDEKGEDEKILAVPVSSVDSYYDNIKDYSDLSKSLLDKITHFFSHYKDLEKGKTVAVGEWVGVEEAKQIVASSIKSGN
>NC_021089.1|WP_015589475.1|1235392_1236538_+|SurA-N-terminal-domain-containing-protein
MHKILILLLIVLPLRLLAIEIEIVADVNGEPISNLDIEKRINFINSLFGTQSVDQKGAKPQILRELIDEIIIINEAQRLNIKLSNEELDNAIMLFLTQSFKLKANEVDQYIEKHNIDLGILRKQIKCQLLWSKIIEVRIVPFINISDKEVNDVKRQTEKPDYLITFQEFIIPDQKGKDVYGIAEDLVKKLRNSNNPESPIKMRKATVNLSQLKGKLKNVLEGLETSDIAGPFSFSEGYSVIKVIDKVQLNHALLESTLKLKQIVVEGSESLLDNLKEQKVNCLNFDKLADNFKLPNAKEFEIKMRDLNPDLQILFSKTSVNEIVELRENGTAKLMMLCDIKSNVAGIEAIKQKMYQQKIMIQSNLLLDDMRKNAAISYRYS
>NC_021089.1|WP_015589476.1|1236641_1237262_+|hypothetical-protein
MKNIMLIGGGVGNAVLFSIGKACLENNNKVLYFAGYKKLSDVFKRALIERASNAVVWACEEGLIETSRDQDKSFHGNIVDAIVSYQQGRLGINLNVIDKIITIGSDKMMKAVNEARKTILKPYLKSSHIAISSVNSPMQCMMKEICAQCVQQHINKETGERSFVYSCSNQDQDMEFIDFDFLSERLKQNSLQEKLTAKWIDHVQRY
>NC_021089.1|WP_015589477.1|1237245_1237797_+|5-formyltetrahydrofolate-cyclo-ligase
MFKDIKQHKKEIREQYRAIRKDIDESYSSYAANSLINLFNQNLSYVKGKTIAAYIPMDGEINVVPLMHSLLDLDYKVAIPNKNKLLKFEEWNKTNEDVIPDTIITPVIAFDDHFNRLGFGGGWYDTMIEKLRPLGKIFIGVAYEKQYCKDLPVEKHDQKLDIIITEMCVRCGSGLLKKVDKKE
>NC_021089.1|WP_015589478.1|1237841_1238876_-|hypothetical-protein
MESSNSMFFDTDYPELRKAISDIIESIAQSSQEGKKELFTTLSEQVKGMNLKDLGLAINDQGLQKEVNKELFIKLIEEALKDLTSENVNSKIIEEALKSVNQQAISNVINNNKGPLDNLVNYFKSASANEKIGIASAGMVLGVAFSPLIVLATLIALVAIGARYVGIGIGKAGEKIKEGAIDAGKAVKSLSKNLGDKLPEVGPKKDNFSKLYNSLAQEIIGYNMSEEGEKIKNAQSKAKVIGMLQNEGQRSAIQELVKNGTIQNFSEDDMKKLREKGTSTYESDKEALEELMEKFQSKIMAIGEGKIEEVEKIVDEKVAAMKPSSHLGISSAARVSEGGITGPS
>NC_021089.1|WP_041573547.1|1239012_1239720_+|isoprenoid-biosynthesis-glyoxalase-ElbB
MGKKKLKAAVVLSGCGHLDGAEVREAVLSLLVLDQQEVDVKCFAPDINITQVMNHRTKEATKEKRNVLVEAARIARGEIYDLKEAKAENFDMLVVPGGYGVAKNLSDLAESKDMVTVMPEFERLVSEFFVTKKPIGAICISPAIIVSILSSKIGKEESKVKVTIGDDREQLIERLGGEHIKCDTELSIEDEEHNVFSCSAYMRSDESTYSVYQGIKHMIDSMVKKINKKTKQPFL
>NC_021089.1|WP_041573548.1|1239895_1240204_+|hypothetical-protein
MSDLFYIETTCCVDGQCDVYTGEVSFNDVMLGKFSLNSCSGKEAMINLDIITFDINIAIDGQNGKTIKKDLKGLEFVTKDDGSWYINKDFGNDKFEIIVNQS
>NC_021089.1|WP_015589481.1|1240206_1242042_-|penicillin-binding-protein-2
MQALLKNKLRSLCFIVPLFIFYIIIIFRIFSLTFDQPTTSENFRKDNIVHKQPDILDRNGVVIATNVPTTSLYIDATKVKNPDSIAAQLCSTLHDLEYKNLYRVLTSEKKFAWIKRHLTPKELLAIKNAGVPGVNFYDDIKRIYPHSNLFSHVLGYTDIDGNGIAGVEAYISKNKQHSVIQVPDIQLYECCNLKAIPAQQFPTQQIQCVTLGSRYKNTDKLRDEQRIPETYVKNNVCDEIAHKTGFQCQCTGMTPDQASAQSSVIRQGWSRSADQYVQLSLDTRVQSIVHEELTKAVSRYQALGGVGIVLNVRNSEVISMVSLPDFNPNLQNKAEDVQKFNRASLGVYEMGSVLKYFTIAAALDANATKTSDLYDVSTPITIGKYKIQDFHKSKIPKITVQDIFVKSSNIGAAKIAVKLGIEKQVEYFKAMKLFSPLKIEIPEKSTPIIPDKWSENTLITASYGYGIAVTPIHLAQTAAALINNGIFHNATLMLNKRSIGEQMISRRTSREMRKLLRAAVTDGTGRKAKIKAYSIGGKTGSAEKVVDGKYSKDANIASFIGVLTMLDPRYIVLIAIDEPQGMHHTGGVIAAPIVRNIINRVAPILNVTPEM
>NC_021089.1|WP_015589482.1|1242062_1242992_+|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MEIILAEPRGFCAGVKRAVDILAITLEKYKNERQVYVLHEIVHNKYIVEDFKKQGVVFVSSIEEIEDNEGILIFSAHGVSKNIEDEAKRKGIQVIDATCPLVSKVHKEAKRYENSGKELILIGHENHPEVKGIRGRVNNPITLVQTLQDVYDLKVKDPDNLSYVTQTTLSIDDTHEIIVALKLRFPSITGPDLKDICYATQNRQNAVKKLAEIVDMVLVVGSKNSSNSNRLLDLCTAREKRAYLIDNYRCVNKSWFQGVEKIGITAGASAPDILVDELMDYLKVNLSVKISVMPGGIIENVQFKIPNLV

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Crispr_ID: NC_021089_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021089_18

1279828-1279946

Orphan

Consensus_repeat	Method
ATTTCTCTATCCGTATAAACAGTCGCACTAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021089_18

>merge|NC_021089|18|1279828-1279946|CRISPRCasFinder
ATTTCTCTATCCGTATAAACAGTCGCACTAGCGCTGGCATTAATTCCTTCTTGTCGTGTTTTTTGCTCTAGTTGATGAGAAAAAGGGATTTCTTTATCCGTATAAACAGTCGCACTAGC

>NC_021089|18|17|1279828-1279946|CRISPRCasFinder
ATTTCTCTATCCGTATAAACAGTCGCACTAGC	GCTGGCATTAATTCCTTCTTGTCGTGTTTTTTGCTCTAGTTGATGAGAAAAAGGG
ATTTCTTTATCCGTATAAACAGTCGCACTAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_021089.1\|WP_007548528.1\|1270398_1270806_-\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744
NC_021089.1\|WP_015589509.1\|1286509_1286908_-\|ribosome-binding-factor-A	unknown	unknown	gnl\|CDD\|376719
NC_021089.1\|WP_006279703.1\|1269830_1270118_-\|monovalent-cation/H(+)-antiporter-subunit-G	unknown	unknown	gnl\|CDD\|183669
NC_021089.1\|WP_015589497.1\|1269301_1269829_-\|DUF4040-domain-containing-protein	unknown	unknown	gnl\|CDD\|183561
NC_021089.1\|WP_015589500.1\|1272098_1273916_+\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NC_021089.1\|WP_015589499.1\|1271599_1272091_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|376377
NC_021089.1\|WP_015589506.1\|1282217_1283297_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NC_021089.1\|WP_015589510.1\|1286917_1289242_-\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NC_021089.1\|WP_015589502.1\|1277807_1278596_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234624
NC_021089.1\|WP_015589505.1\|1280964_1281723_-\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|239321
NC_021089.1\|WP_015589511.1\|1289251_1290814_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NC_021089.1\|WP_015589498.1\|1270124_1270370_-\|Multiple-resistance-and-pH-regulation-protein-F	unknown	unknown	gnl\|CDD\|183618
NC_021089.1\|WP_015589513.1\|1294152_1294893_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_007548541.1\|1282054_1282207_+\|hypothetical-protein	unknown	unknown	unknown
NC_021089.1\|WP_015589512.1\|1290902_1293977_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_021089.1\|WP_015589508.1\|1285648_1286506_-\|4-hydroxybenzoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|237228
NC_021089.1\|WP_015589507.1\|1283384_1284863_+\|UbiD-family-decarboxylase	unknown	unknown	gnl\|CDD\|223121
NC_021089.1\|WP_012673420.1\|1270866_1271163_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|372700
NC_021089.1\|WP_015589501.1\|1274908_1277563_+\|2-oxoglutarate-dehydrogenase-E1-component	unknown	unknown	gnl\|CDD\|236499
NC_021089.1\|WP_015589503.1\|1278726_1279323_-\|TIGR02217-family-protein	unknown	unknown	gnl\|CDD\|274037

Protein	Function_ID	Function_description	E-value
NC_021089.1\|WP_007548528.1\|1270398_1270806_-\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	9.25428e-16
NC_021089.1\|WP_015589509.1\|1286509_1286908_-\|ribosome-binding-factor-A	gnl\|CDD\|376719	pfam02033, RBFA, Ribosome-binding factor A.	4.74289e-14
NC_021089.1\|WP_006279703.1\|1269830_1270118_-\|monovalent-cation/H(+)-antiporter-subunit-G	gnl\|CDD\|183669	PRK12670, PRK12670, putative monovalent cation/H+ antiporter subunit G; Reviewed.	1.39054e-46
NC_021089.1\|WP_015589497.1\|1269301_1269829_-\|DUF4040-domain-containing-protein	gnl\|CDD\|183561	PRK12504, PRK12504, DUF4040 domain-containing protein.	1.0694e-79
NC_021089.1\|WP_015589500.1\|1272098_1273916_+\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NC_021089.1\|WP_015589499.1\|1271599_1272091_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|376377	pfam00731, AIRC, AIR carboxylase. Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.	8.80409e-83
NC_021089.1\|WP_015589506.1\|1282217_1283297_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	6.45897e-36
NC_021089.1\|WP_015589510.1\|1286917_1289242_-\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NC_021089.1\|WP_015589502.1\|1277807_1278596_+\|hypothetical-protein	gnl\|CDD\|234624	PRK00089, era, GTPase Era; Reviewed.	0.00573926
NC_021089.1\|WP_015589505.1\|1280964_1281723_-\|DsbA-family-protein	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	1.86854e-61
NC_021089.1\|WP_015589511.1\|1289251_1290814_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	3.6799e-174
NC_021089.1\|WP_015589498.1\|1270124_1270370_-\|Multiple-resistance-and-pH-regulation-protein-F	gnl\|CDD\|183618	PRK12603, PRK12603, putative monovalent cation/H+ antiporter subunit F; Reviewed.	1.19731e-09
NC_021089.1\|WP_015589512.1\|1290902_1293977_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_021089.1\|WP_015589508.1\|1285648_1286506_-\|4-hydroxybenzoate-octaprenyltransferase	gnl\|CDD\|237228	PRK12847, ubiA, 4-hydroxybenzoate octaprenyltransferase.	4.30992e-140
NC_021089.1\|WP_015589507.1\|1283384_1284863_+\|UbiD-family-decarboxylase	gnl\|CDD\|223121	COG0043, UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases [Coenzyme metabolism].	0
NC_021089.1\|WP_012673420.1\|1270866_1271163_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|372700	pfam13744, HTH_37, Helix-turn-helix domain. Members of this family contains a DNA-binding helix-turn-helix domain.	3.60683e-17
NC_021089.1\|WP_015589501.1\|1274908_1277563_+\|2-oxoglutarate-dehydrogenase-E1-component	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0
NC_021089.1\|WP_015589503.1\|1278726_1279323_-\|TIGR02217-family-protein	gnl\|CDD\|274037	TIGR02217, conserved_hypothetical_protein, TIGR02217 family protein. This model represents a family of conserved hypothetical proteins. It is usually (but not always) found in apparent phage-derived regions of bacterial chromosomes. [Mobile and extrachromosomal element functions, Prophage functions].	3.26766e-106

>NC_021089.1|WP_015589503.1|1278726_1279323_-|TIGR02217-family-protein
MSFTEIRFPENISYGSAGGPEFSTDVVTTHNGCEQRNINWSHARTRYNIAYGVRSNEQLLELITFFHARKGKAIGFRFKDWSDFIAINQEIGIGDNKKTTFQLIKTYVSGEDKHIRMIKKPVHGTVKIYLNGKEESEYSVNYSTGEITFMKPPVKDAIITASFEFDVPVHFDTDYLNASIDDYGSNSWNNIPLIEVKF
>NC_021089.1|WP_015589502.1|1277807_1278596_+|hypothetical-protein
MNTKIFEMLIRRTGLRRDSKAEIIQLNRNEKAFVDEDKKSIELAEAIFEENNMFHFRKPGPAMDYILHKLINDRKLFEEMKDRGTSIIRLFSLLSMYHGRLNCCVIRKGGCITECGILDYAGTYPELVPLEDFILIEPCSYLEYTVLDNDNIRNRLARDLTEDKTKLDIFLNGILATKNSDLVLSCINKIEVLNEEDRYFVNRLQKNNMLDYILNKDDTTLAKSTLKELLKLSILQEGESTKLESPQASSVNVSKAQQHCSI
>NC_021089.1|WP_015589501.1|1274908_1277563_+|2-oxoglutarate-dehydrogenase-E1-component
MSSLSCLYGDNAEFVEEMYSRYLQGDKSIGEDWYRIFSSNLEVNKAETCGAQHVTKVDDSVSSLANFFRSYGHFFADLNPLSPNVNKEVDYQKYSNLYPASDAGIYRDIYCKNIGFEFMHISSYEERMWLQEKIENQNYTLSSQDKKEILRHLIESEMFEQFLHMKFPGYKRFSIEGGESAIVAIERIISDSAAFSIEEIVLGMAHRGRLNILTKVMGKEYAAMLSEFQGNLAYPGGLEVSGDVKYHLGYSSDQTLASGKKIHLSLCPNPSHLEAVNPVLAGRIRAKQNIRSVLGISIHGDAAFIGQGVVAETLTLSNIEGYKVDGIVHIVINNQVGFTANPCCARSSFYCTDVAKSIEAPVFHVNGDNPEAVSFATSLAMEYRQKFKKDVVIDIICYRKYGHNEGDEPNFTQPLMYKVISKHKTPGTLYEEKLIAEKVLSGDEVNKLRSEFRAKLDKSLAESAAYTPKKADWFGGVWSKLRRAKLNDLSEYYTDSDVPPDELKKLGVHINSNIPSSFNINNKVRKILDGRIDSINSGSNIDWATAESLAFASLLTEGIGVRLSGQDSGRGTFSHRHSRLVDQVTEEAFIPLNNINEKQAHFEVIDSALSEYAVMGFEYGYSLDSPYSLVLWEGQFGDFANGAQIMIDQFIASAETKWLRSSGLVLLLPHGYEGQGPEHSSARIERFLQLCAEDNMQVVNCSTPANYFHVLRRQMHRDFRKPLVVFTPKSLLRHKRAVSNLSDFEGKFLTVIPECRKGLVSSDKVRKVVICSGKVYYDIIEMLETQKINDIAVIRLEQFYPFPADKLSNELEKYKNAEIIWCQEEPKNMGGWFFVNPLIEEVLSNLDIQAKRPKCIARPAAASPACGYASVHAQQQEEILRQIA
>NC_021089.1|WP_015589500.1|1272098_1273916_+|DNA-mismatch-repair-endonuclease-MutL
MAIILLDTKTINRIAAGEVIERPASVVKELVENAIDAGSLEIEIKIESGGRNLIIVTDDGNGVEKNDLELAFMRHATSKLSDNELIEIKHLGFRGEALPSIAAVSRIKLSSKAREANEAWSISYEGGEKIGEQTPYSLSQGTHIEVRDLFFATPNRLKFLKTERAETQSIVDIVNNLAMINYHIGFTFNSGNKKLLKYAKQTSLFHRLCEVEEEFQGSSLEINEEEDGIKLTGHICKPTVNRGKSTQIYTFVNGRPIKDNLLIGAVRYAYHDFIPSDRYPFAALHLEIPYDQVDVNVHPNKSEVRFQNKKLIYEIVTRGLIKALSRRIGTFLAHDKKMDSTLPDPFDKPNVQNERRPSPFENQLIKEFASPNERVKSLSEQSKSFDYTGIQKLPSQAETMVLEKKVLEQVDLIESHPLGFARCQVYNTYIIAEVRDKLIIVDQHAAHERLVYECLKQKSSIKRQKLLLPETVEIKNQAGMEMIEIYKDKLFEMGFDIEIKSENKVIVKEIPAILGAIDVKEMLINIIDRLTEIEDTLPVEDKVNKILATIACHGSIRAGRKMRLDEMNELLRQMEKTPYSGQCNHGRPTYIEMKLSDIEKLFERR
>NC_021089.1|WP_015589499.1|1271599_1272091_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MTKIKKDIAVIMGSESDYTTMVHTVDMLKALEVSHDIFIISAHRTPERLFNFAKSAQEEGFKVIIAGAGGAAHLPGMVASLTCLPVIGVPVHSKQLNGLDSLLSIVQMPKGVPVATMSIGENGAYNAAITAVSILSISNSEIAGRLKKWREKQTKEVKEKPVS
>NC_021089.1|WP_012673420.1|1270866_1271163_-|XRE-family-transcriptional-regulator
MEIISLNNLDSAGIKTKLLYIINKIVEKNAWTQAFAAEKLGIDQPKVSQIKNGKIDGFSLERLLGFLKKLDHEITITMTESQEIKSEAEKVKHEVESQ
>NC_021089.1|WP_007548528.1|1270398_1270806_-|DNA-directed-RNA-polymerase-subunit-omega
MAESIVEKCIERVSNRFKLVLLASQRTHDLNTGASNPIQAAKFKGHKNTIVSLHEIAGKQVDTHELFSLLVGRCKEYMKGNMNNVYSSNTSKLANLLNFSDNTDLDASQESQDYEVDGEIDDEINDQDGDEEVSV
>NC_021089.1|WP_015589498.1|1270124_1270370_-|Multiple-resistance-and-pH-regulation-protein-F
MICIAIYTLLSCMSVMLCCIVSKSNDVYNKVLAFNNFSTQVVVLITAISIILNNFFLIDIALLYASVSFISTIALMRLMLF
>NC_021089.1|WP_006279703.1|1269830_1270118_-|monovalent-cation/H(+)-antiporter-subunit-G
MIGSIFIFLGICLIIISNIGVIRFPDFYTRLHAAGITDSSGATLLLIGFALQNGFSINTVKIVLLIFIIWVANSTNSYILARTHYKVKKKTVKEG
>NC_021089.1|WP_015589497.1|1269301_1269829_-|DUF4040-domain-containing-protein
MLEILNVVLLLLLLTVTVFIVFSRHLVVSAVLMCVFSSLIALIYLIMNAPDVAITEASVGAGLSTVFTFAALSLIKNHKVNLSHNPITLFFMLFLAVCLSYFMIQLPDFGSHNAPIHLHVAPYYVENTEKATGIPNIVTAILASFRGYDTFGETIVVFTAALCITLILKEEKEND
>NC_021089.1|WP_015589505.1|1280964_1281723_-|DsbA-family-protein
MSRISFLLILILAVASLPVINNWLSHRGQTLTDDQISTRLDDYISRNFDKIVKTLKEESIKSSYAARDNATKGKILQYKNEIFDSAYPYSGNENSSVIAVGFFDYSCGYCKAMKNDIKQLINDGKIKYIFRDAPILGNDSLRAAKSALAVYFIDKEKYFDFHYSALSHKGGFSDESILDIVKSIGIDEDDFNDSIKDNADKIEQMINNSRLLVRDLGVGGTPFLIIGDSLFVGATDLNILRKKVDELSHKQG
>NC_021089.1|WP_007548541.1|1282054_1282207_+|hypothetical-protein
MSEPIIGREKEIAILQDKLLSQSAEFIAVYGRRRVNVVLSAFYQHNIEVM
>NC_021089.1|WP_015589506.1|1282217_1283297_+|Fic-family-protein
MPMPNYTITSKIANCLMRIEAAKEKVLHLPLTVSMLSSLRETARLYTTHYSTMIEGNRLEPKQIEEVLSGKSHFPKYRRDENEVKGYYAALTQVEQWAARTIPITEKAIQTLHALVMASGKSKVKPTSYRDGQNVIRDSRTRAIIYMPPEAKDVPKLMSSMIDWIRDSEQVPCPIIAGIAHYQFVTIHPYYDGNGRTARLLTTLILHLGGYDLKGLYSLEEYYAKNLGAYYEAISVGPSHNYYMGRAEADITKWVEYFVEGMANSFENVLQRINEEEYHTDQTDLIRKLDPKQRKALELFQGFSAITASQVGELFNFKPRTSAQLCKKWVEMGFIKIVDFSNRGRKYKLSKQYEDLISN
>NC_021089.1|WP_015589507.1|1283384_1284863_+|UbiD-family-decarboxylase
MYNNLRDFIKALEEKKDLIRIKEEVSTVLEMTEIHRRVLSSKGPAIIFENVITENGKNSIPVLVNLFGTIKRIALGLNINPDELRDLGKLLAFLQSPEPPKNFKDAIKMFPLLKVVLSMRSKVVSKAPCQEVVLTGDEVDLSLLPIQTCWPNEPAPLITWPIVVTKGPTKEKQDNFNLGIYRMQVIDKKTTLMRWLAQRGGATHHKRWKEKEQNMKFPAAAVIGSDPATIIAAVTPVPETLSEYQFAGLLRKKPLELVNCRTIPLQVPAHAEIVLEGYVSLDRYQDEGPYGDHTGYYNSVEQFPEFNITAITMRKNPIYLSTFTGKPPDEPSILGEALNEIFVPILINQFPEIVDFYLPPEGCSYRIAVVSIKKSYPGQAKRIVMGILSFLKQFLYTKFIIVVDDDINIRDWKEVMWAMSTRMDPVRDTIMIENAPIDYLDFASPESGLGGKMGFDATNKIPPETKREWGKKIEMSEEIVRKVTEKWEEYMD
>NC_021089.1|WP_015589508.1|1285648_1286506_-|4-hydroxybenzoate-octaprenyltransferase
MHFNRYFSLMRLHSLTGLWLVLFPSLSGILLASTSLSYQVLFLLVLFTIGAFLMRPAGCIINDIFDRKIDAHVERTKYRPLASGALNIKQALALLSLLLSIDLVILLLTNKTTLILGIISMCMIATYPLLKRYVWWPQLFLGFTFNMGSLMGSAAITNQISIESLLFYIGCVFWTLSYDTIYAHQDKKDDEKLGMKSTALYFGDTTKSWLKRFYLISLMTWLYAGILSSLNNIFYIALLAVGFIFHRQYKNFNPDDPSQCMSIFKNNSYVGLLLFFGILLDRIIT
>NC_021089.1|WP_015589509.1|1286509_1286908_-|ribosome-binding-factor-A
MKKEIRNLKIASVLHRAISRILMEGKVFNKNVAVSDVKLSKDLKKADVYIVLSSLNIQVADYLDPEKRRTGDPSENNCDLNTVVNEMNQSAWSIRKSILCYVDLRFIPELVFKPDLAFDNFVNVSKILHNHT
>NC_021089.1|WP_015589510.1|1286917_1289242_-|translation-initiation-factor-IF-2
MNNEDISDKKLTLQGLSKLKLDLNLNSSASPSTGATVVKKRRKKSHDAEEHNLFDESKLGSLTEKEQIFRINAVQNAALLKERNQREEKEKTAKEDSNKEIDEKNEADALSKEINKQVLSNTHLVEPKEDSIDHEDNDKKSFKVNKDIYSKHSKLVIAQAIDEKTEQPPVFKQRFGIRGRKSKFTKGKNISREVIIPDKITIRELSIRMAEDSKSVLKMFKEEVGESYRVDDLVDPDIACEIVEKFNHTAKRVSDTNREKDLFFIEGRESLPKKPKPPIVTFMGHVDHGKTSLLDAFRESNVAERESGGITQHIGAYQIITKDKQKITFIDTPGHEAFTAMRACGANITNIVVIVVAADDGIMKQTVEAINHAKAANVSIIVAINKIDKSEPGDVEKVMSSLPQYDLIPEELGGDVMIVPVSAKKKTNLDKLEETILLIAELMKLEAIEDCRALGWVIESKIDKAKGISATLIVEEGTLKVGDILVVGTTYSKVRSMVNHLGQREKAALPSAPIEITGLNGVPNAGDKFVVVNSEKQAREIVEYRLELIKKKKEDLGDNNLDIFSRNNSETEELSVVLKCDVTGSIEAISSSIDKLGKDQVKLNILHKAVGGITDSDVLLAEASSAVILAFNVKVDSKIRDLAKQKGIEIHTYNIIYELIDDMRMYLTKMLKPVTREVRVGSASVRQIFNVSKAGNIIGCYVSDGVIKKDSLIKVVRGGKLVHEGKLKAIRRFKDDVKEVGVNFECGVSLEGNIDIKVGDILEAYQLVQEERVL
>NC_021089.1|WP_015589511.1|1289251_1290814_-|transcription-termination/antitermination-protein-NusA
MIANRKSSVKQKSNKNNIVGSLDVIKTAGELSLQKGLDFDVVIKALESAIEAVAHQKYGSKSKIVVDIDRNTGKVTSYRKLKVIDDESNEKENTECESITLTQAKLIKGDAKVGDTVSELLSLNTDLASARIAQQKIAQIIKDEESKKQYEEFKDKVGEIRYGIVKQVEYSDLIIDINGTRAYLPLRNLTGGESFREGDKVKAYIQTVKRSDDGRQIILSRTHEGFLEALLNQEIPEIADGLVTIKGIARDAGSRSKVAVFSPDKNIDPVGACVGVKGDRIKTIIHELNGEKIDVINYSSDLGQFVIKAITPAEVSKVIIDENENCIELIVAEDQLSLAIGKKGQNVRLASELVGWKIEILSTQQESERRSKELSQCSALFAEALNLEEIMGQLLVTEGFSSVEDISSASIKELASIEGFNEDIANELHNRANKYLKAENDRKIEELKSLGMEDDVINLTLSIDNKIALSKHDIKTLEDIADLSSYEFCSILSSSSDSKEDLKDTVDSIIIEARKKLGLI
>NC_021089.1|WP_015589512.1|1290902_1293977_-|efflux-RND-transporter-permease-subunit
MQSLLIERNRAVVLLLIVIFIFGSYVYVKMPRESNPDIQIPIISVFVGLPGISAQDSEKLLVLPIENELRSIEGVRELRAFATNDGAHMILEFGTEYDNKEVLDNVRSKLSNIKSKLPVEAESPIINEINLSLFPILNVGLIGNLPERALTEIARKLKKEIESLPNVLKVEVAGMRKETVEVIIEPTVLTKYNIQSNEIFQAISSNNRLVGAGSLENDTGKYSIKISGLLKDIEDIMNIPIRSQGDAVLRIKDIAKVYPRFEDHQGFARINGLPSVVLEISKRNGKNIIDTVNQVKYLMDKAKDQLPENLKVVYLNDQSKNVRDVLDDLENGIIFAVLLILIIMMLSMGTRIAILVALSIPGSFLIGIIALYFMGITLNIVVLFSLIMAVGMLVDDAIVISEYADRKMICGMGKVEAFHTSVRDMFYPVLSSTLTKLAVFFPLLLWPDTVGKFMQYIPITIILTLTGSLIMALVFIPTLGAIFGKPSVTSKEEIEKMNAIESGEIKNAGPIIRAYVRMLEKVLDHPKKFVCATVFVLFSFSVLYFTFGPGVKFFPKVDSDNILISVKAKESLSAKARDLILKEVEERILSIEKKIHVSYARSGAFSDNVIARIQLELMDWRFRRKAKHILNDIRSSVQDMKGIIINVQEEKPGPSADKPIQINLSGSASSLNLAAEKILEIMNQPSSGFINIQDSRSAPEIEWNMSVDKNKATSSEVSVATIGDFIKMVTNGVLIGKYRPNNTDEEIDIVLRFPGKDRNMKTIDNLFINTVNGPYPMSNIVKYAPEKKVNKLNRIDGLRTVTISADVDTSYLVDERVKFIQNSIAQDWDKGVKIDFKGDKEDQQKSGAFLLKAFILAITLMILVLVTQFNNVYHTFIVMTAVFLSTTCVFFVFFLIQQVFVVVMCGVGIIALAGIIVNNNILLLDAFHHQIKVHKNDIKRCVINAAISRVRPILLTVATTVLGLIPMITRLNINFFTLQITYDAPSSQWWVDISTTIASGILAATVLTLFFTPALLVIQKHEKT
>NC_021089.1|WP_015589513.1|1294152_1294893_+|hypothetical-protein
MVAILNITKGKNKVIVSGLAGALSALIFLTAIHIAAKIAIIVSAAAVTYLLLSLIHKIRTKKEQPEITGVSGEKVSEDEGYSSVDEGEEKDTAKEPEKTETELEEEIIRKRAQERMEKGSLGGPINAFGEPIHVTIDAENSNPVDYTKTMVVPEEIILSMLNDKTLTQNNSSSIKNQMKPLPEHMDVPGNPLPGQVLSNLELESKSTQKLSALDLLLQCKNVDNDVKKMLKQPITQKGFNGLGFDR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_021089_1	1.1\|51328\|57\|NC_021089\|CRISPRCasFinder	51328-51384	57	NC_021089.1	786208-786264	0	1.0
NC_021089_6	6.1\|724639\|49\|NC_021089\|CRISPRCasFinder	724639-724687	49	NC_021089.1	1110114-1110162	0	1.0
NC_021089_6	6.1\|724639\|49\|NC_021089\|CRISPRCasFinder	724639-724687	49	NC_021089.1	1274742-1274790	0	1.0
NC_021089_2	2.1\|114469\|34\|NC_021089\|PILER-CR	114469-114502	34	NC_021089.1	342586-342619	1	0.971
NC_021089_2	2.1\|114469\|34\|NC_021089\|PILER-CR	114469-114502	34	NC_021089.1	342750-342783	1	0.971
NC_021089_2	2.1\|114469\|34\|NC_021089\|PILER-CR	114469-114502	34	NC_021089.1	815537-815570	1	0.971
NC_021089_2	2.2\|114546\|40\|NC_021089\|PILER-CR	114546-114585	40	NC_021089.1	1010097-1010136	1	0.975
NC_021089_2	2.2\|114546\|40\|NC_021089\|PILER-CR	114546-114585	40	NC_021089.1	1110107-1110146	1	0.975
NC_021089_2	2.2\|114546\|40\|NC_021089\|PILER-CR	114546-114585	40	NC_021089.1	1142344-1142383	1	0.975
NC_021089_2	2.2\|114546\|40\|NC_021089\|PILER-CR	114546-114585	40	NC_021089.1	1274735-1274774	1	0.975
NC_021089_2	2.4\|114546\|43\|NC_021089\|CRT	114546-114588	43	NC_021089.1	1010097-1010139	1	0.977
NC_021089_2	2.4\|114546\|43\|NC_021089\|CRT	114546-114588	43	NC_021089.1	1110104-1110146	1	0.977
NC_021089_2	2.4\|114546\|43\|NC_021089\|CRT	114546-114588	43	NC_021089.1	1142344-1142386	1	0.977
NC_021089_2	2.4\|114546\|43\|NC_021089\|CRT	114546-114588	43	NC_021089.1	1274732-1274774	1	0.977
NC_021089_3	3.1\|358757\|38\|NC_021089\|CRISPRCasFinder	358757-358794	38	NC_021089.1	1274766-1274803	1	0.974
NC_021089_2	2.1\|114469\|34\|NC_021089\|PILER-CR	114469-114502	34	NC_021089.1	550802-550835	2	0.941
NC_021089_2	2.1\|114469\|34\|NC_021089\|PILER-CR	114469-114502	34	NC_021089.1	623099-623132	2	0.941
NC_021089_2	2.1\|114469\|34\|NC_021089\|PILER-CR	114469-114502	34	NC_021089.1	623184-623217	2	0.941
NC_021089_2	2.1\|114469\|34\|NC_021089\|PILER-CR	114469-114502	34	NC_021089.1	623267-623300	2	0.941
NC_021089_2	2.1\|114469\|34\|NC_021089\|PILER-CR	114469-114502	34	NC_021089.1	623352-623385	2	0.941
NC_021089_2	2.1\|114469\|34\|NC_021089\|PILER-CR	114469-114502	34	NC_021089.1	825539-825572	2	0.941
NC_021089_2	2.1\|114469\|34\|NC_021089\|PILER-CR	114469-114502	34	NC_021089.1	911284-911317	2	0.941
NC_021089_2	2.1\|114469\|34\|NC_021089\|PILER-CR	114469-114502	34	NC_021089.1	1274508-1274541	2	0.941
NC_021089_2	2.1\|114469\|34\|NC_021089\|PILER-CR	114469-114502	34	NC_021089.1	786209-786242	2	0.941
NC_021089_2	2.5\|114629\|29\|NC_021089\|CRT	114629-114657	29	NC_021089.1	850752-850780	2	0.931
NC_021089_10	10.1\|850920\|56\|NC_021089\|CRISPRCasFinder	850920-850975	56	NC_021089.1	51359-51414	2	0.964
NC_021089_10	10.1\|850920\|56\|NC_021089\|CRISPRCasFinder	850920-850975	56	NC_021089.1	786178-786233	2	0.964
NC_021089_10	10.1\|850920\|56\|NC_021089\|CRISPRCasFinder	850920-850975	56	NC_021089.1	1064000-1064055	2	0.964
NC_021089_10	10.1\|850920\|56\|NC_021089\|CRISPRCasFinder	850920-850975	56	NC_021089.1	1274517-1274572	2	0.964

1. spacer 1.1|51328|57|NC_021089|CRISPRCasFinder matches to position: 786208-786264, mismatch: 0, identity: 1.0

ctgagataccgcgaatgaatcgcggtatgacggttcgtggcggcgtgacgataagct	CRISPR spacer
ctgagataccgcgaatgaatcgcggtatgacggttcgtggcggcgtgacgataagct	Protospacer
*********************************************************

2. spacer 6.1|724639|49|NC_021089|CRISPRCasFinder matches to position: 1110114-1110162, mismatch: 0, identity: 1.0

agcagcgggatgacgaattacttaaccatcatctacaccgtcataccgc	CRISPR spacer
agcagcgggatgacgaattacttaaccatcatctacaccgtcataccgc	Protospacer
*************************************************

3. spacer 6.1|724639|49|NC_021089|CRISPRCasFinder matches to position: 1274742-1274790, mismatch: 0, identity: 1.0

agcagcgggatgacgaattacttaaccatcatctacaccgtcataccgc	CRISPR spacer
agcagcgggatgacgaattacttaaccatcatctacaccgtcataccgc	Protospacer
*************************************************

4. spacer 2.1|114469|34|NC_021089|PILER-CR matches to position: 342586-342619, mismatch: 1, identity: 0.971

gcttatcgtcacgccaccgcgaaccgtcataccg	CRISPR spacer
gcttatcgtcacgccaccgctaaccgtcataccg	Protospacer
******************** *************

5. spacer 2.1|114469|34|NC_021089|PILER-CR matches to position: 342750-342783, mismatch: 1, identity: 0.971

gcttatcgtcacgccaccgcgaaccgtcataccg	CRISPR spacer
gcttatcgtcacgccaccgctaaccgtcataccg	Protospacer
******************** *************

6. spacer 2.1|114469|34|NC_021089|PILER-CR matches to position: 815537-815570, mismatch: 1, identity: 0.971

gcttatcgtcacgccaccgcgaaccgtcataccg	CRISPR spacer
gcttatcgtcatgccaccgcgaaccgtcataccg	Protospacer
***********.**********************

7. spacer 2.2|114546|40|NC_021089|PILER-CR matches to position: 1010097-1010136, mismatch: 1, identity: 0.975

attacttaaccatcatctacaccctcataccgcgattcat	CRISPR spacer
attacttaaccatcatctacaccgtcataccgcgattcat	Protospacer
*********************** ****************

8. spacer 2.2|114546|40|NC_021089|PILER-CR matches to position: 1110107-1110146, mismatch: 1, identity: 0.975

attacttaaccatcatctacaccctcataccgcgattcat	CRISPR spacer
attacttaaccatcatctacaccgtcataccgcgattcat	Protospacer
*********************** ****************

9. spacer 2.2|114546|40|NC_021089|PILER-CR matches to position: 1142344-1142383, mismatch: 1, identity: 0.975

attacttaaccatcatctacaccctcataccgcgattcat	CRISPR spacer
attacttaaccatcatctacaccgtcataccgcgattcat	Protospacer
*********************** ****************

10. spacer 2.2|114546|40|NC_021089|PILER-CR matches to position: 1274735-1274774, mismatch: 1, identity: 0.975

attacttaaccatcatctacaccctcataccgcgattcat	CRISPR spacer
attacttaaccatcatctacaccgtcataccgcgattcat	Protospacer
*********************** ****************

11. spacer 2.4|114546|43|NC_021089|CRT matches to position: 1010097-1010139, mismatch: 1, identity: 0.977

attacttaaccatcatctacaccctcataccgcgattcattcg	CRISPR spacer
attacttaaccatcatctacaccgtcataccgcgattcattcg	Protospacer
*********************** *******************

12. spacer 2.4|114546|43|NC_021089|CRT matches to position: 1110104-1110146, mismatch: 1, identity: 0.977

attacttaaccatcatctacaccctcataccgcgattcattcg	CRISPR spacer
attacttaaccatcatctacaccgtcataccgcgattcattcg	Protospacer
*********************** *******************

13. spacer 2.4|114546|43|NC_021089|CRT matches to position: 1142344-1142386, mismatch: 1, identity: 0.977

attacttaaccatcatctacaccctcataccgcgattcattcg	CRISPR spacer
attacttaaccatcatctacaccgtcataccgcgattcattcg	Protospacer
*********************** *******************

14. spacer 2.4|114546|43|NC_021089|CRT matches to position: 1274732-1274774, mismatch: 1, identity: 0.977

attacttaaccatcatctacaccctcataccgcgattcattcg	CRISPR spacer
attacttaaccatcatctacaccgtcataccgcgattcattcg	Protospacer
*********************** *******************

15. spacer 3.1|358757|38|NC_021089|CRISPRCasFinder matches to position: 1274766-1274803, mismatch: 1, identity: 0.974

ttagccgctaacaagcagcgggatgacgaattgcttaa	CRISPR spacer
ttagccgctaacaagcagcgggatgacgaattacttaa	Protospacer
********************************.*****

16. spacer 2.1|114469|34|NC_021089|PILER-CR matches to position: 550802-550835, mismatch: 2, identity: 0.941

gcttatcgtcacgccaccgcgaaccgtcataccg	CRISPR spacer
gcttatcgtcacgccgccacgaaccgtcataccg	Protospacer
***************.**.***************

17. spacer 2.1|114469|34|NC_021089|PILER-CR matches to position: 623099-623132, mismatch: 2, identity: 0.941

gcttatcgtcacgccaccgcgaaccgtcataccg	CRISPR spacer
gcttatcgtcacgccgccacgaaccgtcataccg	Protospacer
***************.**.***************

18. spacer 2.1|114469|34|NC_021089|PILER-CR matches to position: 623184-623217, mismatch: 2, identity: 0.941

gcttatcgtcacgccaccgcgaaccgtcataccg	CRISPR spacer
gcttatcgtcatgccactgcgaaccgtcataccg	Protospacer
***********.*****.****************

19. spacer 2.1|114469|34|NC_021089|PILER-CR matches to position: 623267-623300, mismatch: 2, identity: 0.941

gcttatcgtcacgccaccgcgaaccgtcataccg	CRISPR spacer
gcttatcgtcacgccgccacgaaccgtcataccg	Protospacer
***************.**.***************

20. spacer 2.1|114469|34|NC_021089|PILER-CR matches to position: 623352-623385, mismatch: 2, identity: 0.941

gcttatcgtcacgccaccgcgaaccgtcataccg	CRISPR spacer
gcttatcgtcatgccactgcgaaccgtcataccg	Protospacer
***********.*****.****************

21. spacer 2.1|114469|34|NC_021089|PILER-CR matches to position: 825539-825572, mismatch: 2, identity: 0.941

gcttatcgtcacgccaccgcgaaccgtcataccg	CRISPR spacer
gcttatcgtcatgccactgcgaaccgtcataccg	Protospacer
***********.*****.****************

22. spacer 2.1|114469|34|NC_021089|PILER-CR matches to position: 911284-911317, mismatch: 2, identity: 0.941

gcttatcgtcacgccaccgcgaaccgtcataccg	CRISPR spacer
gcttatcgtcacgccgccacgaaccgtcataccg	Protospacer
***************.**.***************

23. spacer 2.1|114469|34|NC_021089|PILER-CR matches to position: 1274508-1274541, mismatch: 2, identity: 0.941

gcttatcgtcacgccaccgcgaaccgtcataccg	CRISPR spacer
gcttatcgtcacgccgccacgaaccgtcataccg	Protospacer
***************.**.***************

24. spacer 2.1|114469|34|NC_021089|PILER-CR matches to position: 786209-786242, mismatch: 2, identity: 0.941

gcttatcgtcacgccaccgcgaaccgtcataccg	CRISPR spacer
gcttatcgtcacgccgccacgaaccgtcataccg	Protospacer
***************.**.***************

25. spacer 2.5|114629|29|NC_021089|CRT matches to position: 850752-850780, mismatch: 2, identity: 0.931

ggtcatgccgccgcaaaccgtcataccgc	CRISPR spacer
ggtcatgccgccacgaaccgtcataccgc	Protospacer
************.*.**************

26. spacer 10.1|850920|56|NC_021089|CRISPRCasFinder matches to position: 51359-51414, mismatch: 2, identity: 0.964

ggttcgcggcggcgtgacgataagctcgtcatcccgctacttgttagcgggatcta	CRISPR spacer
ggttcgtggcggcgtgacgataagctcgtcatcccgctgcttgttagcgggatcta	Protospacer
******.*******************************.*****************

27. spacer 10.1|850920|56|NC_021089|CRISPRCasFinder matches to position: 786178-786233, mismatch: 2, identity: 0.964

ggttcgcggcggcgtgacgataagctcgtcatcccgctacttgttagcgggatcta	CRISPR spacer
ggttcgtggcggcgtgacgataagctcgtcatcccgctacgtgttagcgggatcta	Protospacer
******.********************************* ***************

28. spacer 10.1|850920|56|NC_021089|CRISPRCasFinder matches to position: 1064000-1064055, mismatch: 2, identity: 0.964

ggttcgcggcggcgtgacgataagctcgtcatcccgctacttgttagcgggatcta	CRISPR spacer
ggttcgtggcggcgtgacgataagctcgtcatcccgctgcttgttagcgggatcta	Protospacer
******.*******************************.*****************

29. spacer 10.1|850920|56|NC_021089|CRISPRCasFinder matches to position: 1274517-1274572, mismatch: 2, identity: 0.964

ggttcgcggcggcgtgacgataagctcgtcatcccgctacttgttagcgggatcta	CRISPR spacer
ggttcgtggcggcgtgacgataagctcgtcatcccgctgcttgttagcgggatcta	Protospacer
******.*******************************.*****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_021089_14	14.1\|1079042\|53\|NC_021089\|CRISPRCasFinder	1079042-1079094	53	MN180249	UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence	19779-19831	0	1.0
NC_021089_2	2.1\|114469\|34\|NC_021089\|PILER-CR	114469-114502	34	MN180249	UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence	19794-19827	1	0.971
NC_021089_2	2.3\|114469\|37\|NC_021089\|CRT	114469-114505	37	MN180249	UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence	19791-19827	1	0.973
NC_021089_2	2.5\|114629\|29\|NC_021089\|CRT	114629-114657	29	MN180249	UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence	19793-19821	4	0.862
NC_021089_2	2.5\|114629\|29\|NC_021089\|CRT	114629-114657	29	NZ_CP021032	Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence	332714-332742	7	0.759
NC_021089_2	2.5\|114629\|29\|NC_021089\|CRT	114629-114657	29	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	957600-957628	8	0.724
NC_021089_2	2.5\|114629\|29\|NC_021089\|CRT	114629-114657	29	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	12275-12303	8	0.724
NC_021089_3	3.1\|358757\|38\|NC_021089\|CRISPRCasFinder	358757-358794	38	MN180249	UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence	19744-19781	8	0.789
NC_021089_2	2.1\|114469\|34\|NC_021089\|PILER-CR	114469-114502	34	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	859162-859195	9	0.735

1. spacer 14.1|1079042|53|NC_021089|CRISPRCasFinder matches to MN180249 (UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence) position: , mismatch: 0, identity: 1.0

tgaggcttatcgtcatgccaccgcgaaccgtcataccgtcacggtatctctta	CRISPR spacer
tgaggcttatcgtcatgccaccgcgaaccgtcataccgtcacggtatctctta	Protospacer
*****************************************************

2. spacer 2.1|114469|34|NC_021089|PILER-CR matches to MN180249 (UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence) position: , mismatch: 1, identity: 0.971

gcttatcgtcacgccaccgcgaaccgtcataccg	CRISPR spacer
gcttatcgtcatgccaccgcgaaccgtcataccg	Protospacer
***********.**********************

3. spacer 2.3|114469|37|NC_021089|CRT matches to MN180249 (UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence) position: , mismatch: 1, identity: 0.973

gcttatcgtcacgccaccgcgaaccgtcataccgtca	CRISPR spacer
gcttatcgtcatgccaccgcgaaccgtcataccgtca	Protospacer
***********.*************************

4. spacer 2.5|114629|29|NC_021089|CRT matches to MN180249 (UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence) position: , mismatch: 4, identity: 0.862

ggtcatgccgccgcaaaccgtcataccgc	CRISPR spacer
cgtcatgccaccgcgaaccgtcataccgt	Protospacer
 ********.****.*************.

5. spacer 2.5|114629|29|NC_021089|CRT matches to NZ_CP021032 (Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence) position: , mismatch: 7, identity: 0.759

ggtcatgccgccgcaaaccgtcataccgc	CRISPR spacer
cgatctgccgccggcaaccgtcataccgg	Protospacer
 * . ********  *************

6. spacer 2.5|114629|29|NC_021089|CRT matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.724

ggtcatgccgccgcaaaccgtcataccgc	CRISPR spacer
cccgatgccgccccaaaccgtcatccccg	Protospacer
  . ******** *********** **

7. spacer 2.5|114629|29|NC_021089|CRT matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.724

ggtcatgccgccgcaaaccgtcataccgc	CRISPR spacer
cccgatgccgccccaaaccgtcatccccg	Protospacer
  . ******** *********** **

8. spacer 3.1|358757|38|NC_021089|CRISPRCasFinder matches to MN180249 (UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence) position: , mismatch: 8, identity: 0.789

ttagccgctaacaagcagcgggatgacgaattgcttaa-	CRISPR spacer
ttagccgctaacaagtagcgggatgacg-gttgtcaggt	Protospacer
***************.************ .***.. ..

9. spacer 2.1|114469|34|NC_021089|PILER-CR matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.735

-gcttatcgtcacgccaccgcgaaccgtcataccg	CRISPR spacer
cgcctgct-cgacggcaccgcgaaccgtcagaccg	Protospacer
 **.*... . *** *************** ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

46335 : 233911

176

Shigella_phage(24.0%)

protease,tRNA,integrase,head,transposase,tail

attL 37482:37536|attR 230959:231137

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
37482:37536	attL	NA	NA	NA	NA
WP_015588780.1\|46335_47283_-\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	2.6e-125	82.4
37482:37536	attL	NA	NA	NA	NA
WP_015588781.1\|48930_49572_+	dioxygenase	NA	NA	NA	NA
WP_010962337.1\|49668_51171_+	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	7.7e-55	39.0
WP_015588783.1\|51542_52730_+	MFS transporter	NA	NA	NA	NA
WP_006279881.1\|52790_53096_+	integration host factor subunit alpha	NA	NA	NA	NA
WP_006279880.1\|53095_53422_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_006279879.1\|53467_54064_+	M23 family metallopeptidase	A0A7K9	Microcystis_virus	2.8e-08	35.5
WP_015588784.1\|54076_56527_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	9.1e-162	38.7
WP_015588785.1\|56645_57251_+	OmpA-like protein	NA	NA	NA	NA
WP_010082072.1\|57769_57934_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1
WP_010082071.1\|57926_58088_-	hypothetical protein	U5P429	Shigella_phage	8.6e-05	52.2
WP_141456787.1\|58091_58526_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	5.4e-09	35.5
WP_081600753.1\|58510_58813_-\|transposase	transposase	NA	NA	NA	NA
WP_015588786.1\|58949_59657_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_006279876.1\|59649_59961_-	HU family DNA-binding protein	NA	NA	NA	NA
WP_007548415.1\|60107_60563_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_010082596.1\|60573_61032_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_006279873.1\|61161_62385_+	TolC family protein	NA	NA	NA	NA
WP_010082598.1\|62404_62980_+	DUF2497 domain-containing protein	NA	NA	NA	NA
WP_015588787.1\|63056_63635_+	RlmE family RNA methyltransferase	NA	NA	NA	NA
WP_041573492.1\|64218_64413_-	hypothetical protein	NA	NA	NA	NA
WP_015588788.1\|64695_64998_+	50S ribosomal protein L21	NA	NA	NA	NA
WP_006279564.1\|65008_65278_+	50S ribosomal protein L27	NA	NA	NA	NA
WP_015588789.1\|65421_66594_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.6e-90	47.6
WP_015588790.1\|66720_67404_+	TenA family protein	NA	NA	NA	NA
WP_010962391.1\|67448_68108_+	TenA family transcriptional regulator	NA	NA	NA	NA
WP_006279354.1\|68155_68983_+	cytochrome c oxidase subunit 3	NA	NA	NA	NA
WP_015588791.1\|68983_69472_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_010082183.1\|69516_69984_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_015588792.1\|71300_72722_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_051062191.1\|72774_75798_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_015588794.1\|75830_76250_-	DedA family protein	NA	NA	NA	NA
WP_015588795.1\|76256_77630_-\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	4.9e-48	30.5
WP_015588796.1\|77622_78279_-	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_010962397.1\|78369_79026_-	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_006013840.1\|79192_79360_-	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_015588797.1\|79488_80262_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-26	34.9
WP_015588798.1\|80580_82398_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_015588799.1\|82381_84499_-\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_015588800.1\|84502_85342_-\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_015588801.1\|85386_86145_-	hypothetical protein	NA	NA	NA	NA
WP_015588802.1\|86291_87287_-	porphobilinogen synthase	NA	NA	NA	NA
WP_015588803.1\|87279_88305_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA
WP_041573557.1\|88288_90337_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA
WP_006279675.1\|90342_90555_-	hypothetical protein	NA	NA	NA	NA
WP_015588805.1\|91158_91980_-	uracil-DNA glycosylase	A0A127AW33	Bacillus_phage	1.2e-12	30.8
WP_015588806.1\|91969_92509_-	peptide deformylase	E3SLL2	Synechococcus_phage	4.0e-22	41.8
WP_015588807.1\|92647_93886_+	cell division protein FtsA	NA	NA	NA	NA
WP_015588808.1\|93927_94329_+	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
WP_015588809.1\|94478_95261_+	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_015588810.1\|95288_96536_-	MFS transporter	Q6JIH2	Burkholderia_virus	1.6e-50	31.8
WP_015588811.1\|96756_97638_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_015588812.1\|97634_97946_+	hypothetical protein	NA	NA	NA	NA
WP_015588813.1\|98582_98882_-	ETC complex I subunit	NA	NA	NA	NA
WP_010962412.1\|99027_99639_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_015588814.1\|99638_100187_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_015588815.1\|100189_101152_-\|transposase	IS481-like element ISWpi4 family transposase	NA	NA	NA	NA
WP_015588816.1\|101595_102744_-	2-octaprenyl-6-methoxyphenyl hydroxylase	NA	NA	NA	NA
WP_010082072.1\|103237_103402_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1
WP_010082071.1\|103394_103556_-	hypothetical protein	U5P429	Shigella_phage	8.6e-05	52.2
WP_141456787.1\|103559_103994_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	5.4e-09	35.5
WP_081600753.1\|103978_104281_-\|transposase	transposase	NA	NA	NA	NA
WP_039963646.1\|104475_104751_+	HNH endonuclease	NA	NA	NA	NA
WP_015588817.1\|104747_105218_+	hypothetical protein	A0A1B2LRR6	Wolbachia_phage	1.6e-19	61.8
WP_015588818.1\|105218_106259_-	Mrp/NBP35 family ATP-binding protein	NA	NA	NA	NA
WP_015588819.1\|106266_106665_-	hypothetical protein	NA	NA	NA	NA
WP_039963646.1\|106661_106937_-	HNH endonuclease	NA	NA	NA	NA
WP_081600753.1\|107131_107434_+\|transposase	transposase	NA	NA	NA	NA
WP_141456787.1\|107418_107853_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	5.4e-09	35.5
WP_010082071.1\|107856_108018_+	hypothetical protein	U5P429	Shigella_phage	8.6e-05	52.2
WP_010082072.1\|108010_108175_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1
WP_041573495.1\|108578_109355_-	hypothetical protein	NA	NA	NA	NA
WP_015588821.1\|109420_109810_-	hypothetical protein	NA	NA	NA	NA
WP_015588822.1\|109784_110195_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_015588823.1\|110486_111035_-\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_015588824.1\|111171_111483_-	hypothetical protein	NA	NA	NA	NA
WP_041573496.1\|111811_111994_-	hypothetical protein	NA	NA	NA	NA
WP_081600757.1\|111987_114186_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_015588825.1\|115260_116553_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A0N7G7I9	Chrysochromulina_ericina_virus	3.9e-23	33.9
WP_015588826.1\|116553_117597_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.1e-31	36.4
WP_015588827.1\|117743_119471_+	hypothetical protein	NA	NA	NA	NA
WP_012673066.1\|119652_120249_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	8.4e-21	31.1
WP_015588828.1\|120306_120897_+	CvpA family protein	NA	NA	NA	NA
WP_006279412.1\|121374_121812_+	hypothetical protein	NA	NA	NA	NA
WP_006279415.1\|122017_122239_+	hypothetical protein	NA	NA	NA	NA
WP_015588829.1\|122229_122505_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_006279515.1\|122676_122955_+	YggT family protein	NA	NA	NA	NA
WP_015588830.1\|122955_125070_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	2.1e-74	43.4
WP_015588831.1\|125251_126103_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.0e-88	59.5
WP_015588832.1\|126305_126854_+	hypothetical protein	NA	NA	NA	NA
WP_015588833.1\|127051_127672_+	hypothetical protein	NA	NA	NA	NA
WP_015588834.1\|127697_128978_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_041573497.1\|130514_130685_+	hypothetical protein	NA	NA	NA	NA
WP_095866567.1\|131009_131351_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	7.2e-09	42.5
WP_081600759.1\|131589_131754_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1
WP_015588835.1\|132773_135161_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	7.3e-108	34.3
WP_015588836.1\|135377_135986_-	SCO family protein	NA	NA	NA	NA
WP_015588837.1\|136030_136726_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	8.0e-39	37.0
WP_015588838.1\|136743_137394_-	Tim44 domain-containing protein	NA	NA	NA	NA
WP_006279761.1\|137558_138062_+	protein-export chaperone SecB	NA	NA	NA	NA
WP_015588839.1\|138076_140662_+	aconitate hydratase AcnA	NA	NA	NA	NA
WP_015588840.1\|140796_143937_+	bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA	NA	NA	NA
WP_006279756.1\|145488_145833_-	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_015588841.1\|145849_146164_-	Small multidrug resistance protein	NA	NA	NA	NA
WP_015588842.1\|146263_147370_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	3.2e-42	34.2
WP_015588843.1\|148199_148958_-	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA
WP_041573499.1\|148938_149892_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_015588845.1\|149981_150767_-	hypothetical protein	NA	NA	NA	NA
WP_015588846.1\|150960_151335_-	ferredoxin family protein	NA	NA	NA	NA
WP_015588847.1\|151396_152485_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	2.6e-28	35.3
WP_015588848.1\|152708_153437_-	triosephosphate isomerase	NA	NA	NA	NA
WP_015588849.1\|153612_154425_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_015588850.1\|154541_156035_+	IMP dehydrogenase	A0A0N9Q9A5	Chrysochromulina_ericina_virus	1.3e-41	41.5
WP_148142725.1\|156823_156997_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	U5P429	Shigella_phage	2.8e-09	53.6
WP_015588851.1\|157244_158753_+	protein translocase subunit SecD	NA	NA	NA	NA
WP_015588852.1\|158749_159535_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_015588853.1\|159768_160584_+	hypothetical protein	NA	NA	NA	NA
WP_015588854.1\|160646_161819_+	porin	NA	NA	NA	NA
WP_007548709.1\|161989_162283_+\|transposase	transposase	NA	NA	NA	NA
WP_081600760.1\|162354_162702_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_010082071.1\|162705_162867_+	hypothetical protein	U5P429	Shigella_phage	8.6e-05	52.2
WP_010082072.1\|162859_163024_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1
WP_015588855.1\|163115_164519_-	nitronate monooxygenase	NA	NA	NA	NA
WP_006280338.1\|165203_165791_-	dephospho-CoA kinase	NA	NA	NA	NA
165144:165198	attR	NA	NA	NA	NA
WP_015588856.1\|166102_167281_-	ribonuclease D	A0A0M5KJQ5	Mollivirus	1.0e-06	29.9
165144:165198	attR	NA	NA	NA	NA
WP_007548550.1\|167414_167813_+	hypothetical protein	NA	NA	NA	NA
WP_041573500.1\|168801_171312_-	DNA mismatch repair protein MutS	A0A2H4UUR2	Bodo_saltans_virus	9.6e-34	22.7
WP_015588858.1\|171790_172609_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_006279522.1\|172794_172977_-	hypothetical protein	NA	NA	NA	NA
WP_015588859.1\|173374_174082_+	tellurium resistance protein TerC	A0A0R6PEZ3	Moraxella_phage	2.5e-27	35.6
WP_015588860.1\|174114_175677_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_015588861.1\|176556_178341_-	ribonucleoside-diphosphate reductase subunit alpha	A0A0K1LMZ5	Caulobacter_phage	1.7e-202	59.9
WP_015588862.1\|178399_179476_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_006279896.1\|183184_183322_-	hypothetical protein	NA	NA	NA	NA
WP_006279898.1\|183527_183662_-	50S ribosomal protein L34	NA	NA	NA	NA
WP_041573560.1\|183769_184858_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_015588864.1\|184959_186387_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_015588865.1\|186399_186744_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
WP_010962434.1\|187131_187350_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_148142725.1\|187526_187700_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	U5P429	Shigella_phage	2.8e-09	53.6
WP_015588866.1\|188634_189564_-	AEC family transporter	NA	NA	NA	NA
WP_010962461.1\|190037_191201_+	multidrug effflux MFS transporter	S4TR35	Salmonella_phage	4.8e-20	26.1
WP_015588867.1\|191228_192308_-	peptide chain release factor 1	NA	NA	NA	NA
WP_015588868.1\|192406_193000_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_015588869.1\|193004_193916_+	acetylglutamate kinase	NA	NA	NA	NA
WP_141457335.1\|194064_194133_+	hypothetical protein	NA	NA	NA	NA
WP_015588870.1\|194308_194770_+	dUTP diphosphatase	V5L6Y7	Insectomime_virus	7.2e-36	55.1
WP_015588871.1\|194848_195487_+	hypothetical protein	NA	NA	NA	NA
WP_015588872.1\|195605_196088_-	transcription antitermination factor NusB	NA	NA	NA	NA
WP_015588873.1\|196087_196516_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	7.9e-13	35.0
WP_015588874.1\|196493_198203_-	membrane protein insertase YidC	NA	NA	NA	NA
WP_015588875.1\|198337_198841_+\|protease	TIGR02281 family clan AA aspartic protease	NA	NA	NA	NA
WP_015588876.1\|198847_199723_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	4.0e-43	40.0
WP_015588877.1\|202171_204124_-	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_015588878.1\|204436_205678_+	hypothetical protein	NA	NA	NA	NA
WP_015588879.1\|205792_207118_+	dihydroorotase	NA	NA	NA	NA
WP_015588880.1\|207316_208501_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_015588881.1\|208504_209101_+	orotate phosphoribosyltransferase	NA	NA	NA	NA
WP_015588882.1\|209198_211028_+	translational GTPase TypA	E4ZFJ7	Streptococcus_phage	8.0e-22	40.8
WP_015588883.1\|211090_211534_+\|transposase	PD-(D/E)XK nuclease family transposase	A0A1B2LRR6	Wolbachia_phage	1.1e-28	79.3
WP_015588884.1\|212305_214867_+	ATP-dependent chaperone ClpB	A0A223W0B1	Agrobacterium_phage	6.2e-121	33.7
WP_015588885.1\|214894_219646_+	NAD-glutamate dehydrogenase	NA	NA	NA	NA
WP_010082258.1\|219650_219947_+	hypothetical protein	NA	NA	NA	NA
WP_015588886.1\|219918_221301_+	PleD family two-component system response regulator	G3MA91	Bacillus_virus	2.6e-20	33.5
WP_015588887.1\|222116_222839_-	DNA repair protein RecO	NA	NA	NA	NA
WP_007548499.1\|222822_222969_-	hypothetical protein	NA	NA	NA	NA
WP_015588888.1\|224240_224861_+	hypothetical protein	NA	NA	NA	NA
WP_006279908.1\|225065_225404_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_006280119.1\|225535_226525_+	ribonucleotide-diphosphate reductase subunit beta	A0A1B1IW95	uncultured_Mediterranean_phage	6.6e-103	54.5
WP_015588889.1\|226663_227794_+	cation:dicarboxylase symporter family transporter	NA	NA	NA	NA
WP_015588890.1\|227793_228378_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_015588891.1\|228372_228996_-	hypothetical protein	NA	NA	NA	NA
WP_041573502.1\|229276_229987_+	class II aldolase/adducin family protein	NA	NA	NA	NA
WP_148142725.1\|230784_230958_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	U5P429	Shigella_phage	2.8e-09	53.6
WP_007548651.1\|231214_232546_+	DNA recombination protein RmuC	NA	NA	NA	NA
WP_041573564.1\|232582_233911_-\|transposase	IS4-like element ISWosp9 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

258941 : 326735

Wolbachia_phage(71.88%)

plate,terminase,head,transposase,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015588904.1\|258941_260255_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	5.0e-34	30.2
WP_015588905.1\|260840_261845_-	virulence RhuM family protein	Q9JMN3	Wolbachia_phage	4.8e-178	94.0
WP_015588906.1\|262681_263158_+	Holliday junction DNA helicase RuvC	E9P621	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	4.1e-71	83.2
WP_015588907.1\|263282_264512_+	DNA modification methylase	E9P620	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	2.9e-217	90.4
WP_015588908.1\|264708_265797_+\|transposase	IS481-like element ISWpi2 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	4.6e-174	81.8
WP_051062200.1\|265906_268429_-	ankyrin repeat domain-containing protein	Q9JML0	Wolbachia_phage	2.3e-104	41.3
WP_015588910.1\|268410_269871_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_015588911.1\|276056_278486_+	hypothetical protein	NA	NA	NA	NA
WP_010082266.1\|279188_279728_-	hypothetical protein	D9I601	Acinetobacter_virus	2.4e-22	36.5
WP_015588912.1\|279728_280625_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	5.7e-130	79.5
WP_010962718.1\|280754_281666_+	helix-turn-helix domain-containing protein	A0A1B2LRR8	Wolbachia_phage	4.5e-82	61.3
WP_015588904.1\|283777_285091_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	5.0e-34	30.2
WP_015588905.1\|285676_286681_-	virulence RhuM family protein	Q9JMN3	Wolbachia_phage	4.8e-178	94.0
WP_015588906.1\|287517_287994_+	Holliday junction DNA helicase RuvC	E9P621	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	4.1e-71	83.2
WP_015588907.1\|288118_289348_+	DNA modification methylase	E9P620	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	2.9e-217	90.4
WP_010962472.1\|289364_289856_+	MarR family transcriptional regulator	A0A1B2LRT3	Wolbachia_phage	1.5e-63	83.0
WP_015588914.1\|290025_291852_+\|terminase	phage terminase large subunit family protein	A0A1B2LRQ2	Wolbachia_phage	0.0e+00	85.5
WP_010082193.1\|291851_292073_+	hypothetical protein	A0A1B2LRU7	Wolbachia_phage	1.0e-24	83.6
WP_010082194.1\|292118_292532_+	hypothetical protein	NA	NA	NA	NA
WP_010082195.1\|292732_292954_+	hypothetical protein	NA	NA	NA	NA
WP_010082196.1\|292934_293243_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_015588915.1\|294845_295940_+	S49 family peptidase	Q9JMP1	Wolbachia_phage	7.2e-143	72.0
WP_015588916.1\|296369_297431_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_015588917.1\|297405_297774_+\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	2.0e-49	84.4
WP_015588918.1\|297806_298808_+\|capsid	major capsid protein	Q9JMM2	Wolbachia_phage	1.6e-186	94.9
WP_010082171.1\|298898_299159_+	hypothetical protein	Q9JMM1	Wolbachia_phage	9.6e-22	71.8
WP_010962479.1\|300690_301188_+\|tail	phage tail protein	Q75QM4	Wolbachia_phage	8.9e-24	45.1
WP_015588919.1\|301194_301668_+	hypothetical protein	Q75QM3	Wolbachia_phage	6.6e-61	71.3
WP_015588920.1\|301654_302119_+\|plate	phage baseplate assembly protein V	Q9JML8	Wolbachia_phage	9.0e-63	77.3
WP_015588921.1\|302121_302376_+	PAAR domain-containing protein	A0A1B2LRW2	Wolbachia_phage	3.6e-13	75.6
WP_015588922.1\|302372_302708_+	GPW/gp25 family protein	E9P610	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	9.1e-41	73.9
WP_015588923.1\|302710_303520_+\|plate	baseplate J/gp47 family protein	Q9JML6	Wolbachia_phage	1.6e-115	82.5
WP_015588924.1\|303519_304680_+\|tail	phage tail protein	Q9JML5	Wolbachia_phage	1.7e-190	81.0
WP_015588925.1\|304853_305456_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_010962485.1\|305717_306308_+	ankyrin repeat domain-containing protein	F8QZT9	Wolbachia_phage	1.5e-06	46.5
WP_015588926.1\|306340_306769_+	DUF2924 domain-containing protein	Q9JML2	Wolbachia_phage	3.9e-60	84.4
WP_010962487.1\|306771_308274_+	recombinase family protein	Q9JML1	Wolbachia_phage	1.9e-247	85.7
WP_010962488.1\|308343_308487_+	hypothetical protein	NA	NA	NA	NA
WP_010962489.1\|308461_309676_+	hypothetical protein	NA	NA	NA	NA
WP_144054587.1\|309836_310511_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_015588928.1\|310612_312730_-	ankyrin repeat domain-containing protein	Q9JML0	Wolbachia_phage	3.2e-123	48.4
WP_179943638.1\|313074_315741_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_015588930.1\|316757_317474_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_015588931.1\|317998_319501_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_144054595.1\|319974_323385_-	cytoplasmic incompatibility factor CifB	NA	NA	NA	NA
WP_015588933.1\|323471_324947_-	hypothetical protein	NA	NA	NA	NA
WP_015588935.1\|325790_326735_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	2.4e-126	80.8

DBSCAN-SWA_3

331681 : 393654

Tupanvirus(15.38%)

transposase,tRNA,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041573564.1\|331681_333010_-\|transposase	IS4-like element ISWosp9 family transposase	NA	NA	NA	NA
WP_141457203.1\|333115_333268_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_095866555.1\|333506_333860_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.3e-08	42.5
WP_038198869.1\|333861_334146_-\|transposase	transposase	NA	NA	NA	NA
WP_015588939.1\|335005_336475_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_015588940.1\|336864_338091_+\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_041573573.1\|338158_339070_+	P44/Msp2 family outer membrane protein	NA	NA	NA	NA
WP_015588942.1\|339077_340565_-	type II secretion system protein	NA	NA	NA	NA
WP_015588943.1\|340698_342063_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_015588944.1\|342932_343607_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	5.2e-19	52.8
WP_015588945.1\|343633_345130_+	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_015588946.1\|345134_346409_+	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	5.2e-137	60.7
WP_015588947.1\|346396_347419_+	GTPase ObgE	NA	NA	NA	NA
WP_141457376.1\|347500_347593_-	hypothetical protein	NA	NA	NA	NA
WP_015588948.1\|347894_349289_+	class II fumarate hydratase	NA	NA	NA	NA
WP_006280013.1\|349483_349807_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_015588949.1\|349816_350041_-	BolA/IbaG family iron-sulfur metabolism protein	NA	NA	NA	NA
WP_015588951.1\|351092_352415_-	NADP-dependent malic enzyme	NA	NA	NA	NA
WP_015588952.1\|352549_353092_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_015588953.1\|353203_354145_+	hypothetical protein	NA	NA	NA	NA
WP_015588954.1\|354205_354913_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_015588955.1\|354973_355714_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_015588956.1\|355710_356649_+	M23 family metallopeptidase	A0A292GJG6	Xanthomonas_phage	3.7e-23	47.8
WP_041573576.1\|356656_357502_+	SPFH domain-containing protein	NA	NA	NA	NA
WP_006280002.1\|357669_357945_+	hypothetical protein	NA	NA	NA	NA
WP_010962623.1\|357925_358618_+	thiamine diphosphokinase	NA	NA	NA	NA
WP_141456678.1\|359010_359340_+\|transposase	transposase	NA	NA	NA	NA
WP_174517030.1\|359341_359959_+\|transposase	transposase	NA	NA	NA	NA
WP_015588958.1\|360960_362364_+	malonyl-CoA decarboxylase	NA	NA	NA	NA
WP_015588959.1\|362443_364240_+	elongation factor 4	A0A2K9L2P9	Tupanvirus	9.7e-20	41.5
WP_015588960.1\|364856_365612_+	hypothetical protein	NA	NA	NA	NA
WP_015588961.1\|366338_366719_+	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_015588962.1\|366694_367693_-	pyruvate dehydrogenase complex E1 component subunit beta	A0A0K0KW14	Prochlorococcus_phage	2.0e-11	29.5
WP_015588963.1\|368240_369341_-	AAA family ATPase	E5ESM9	Bathycoccus_sp._RCC1105_virus	8.5e-43	43.2
WP_144054588.1\|370413_371688_+	MFS transporter	NA	NA	NA	NA
WP_015588966.1\|372152_372563_-	nucleoside deaminase	NA	NA	NA	NA
WP_015588967.1\|372588_374193_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	3.3e-152	50.5
WP_007548880.1\|374192_374513_-	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_015588968.1\|374657_375173_+	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_015588969.1\|375223_376156_-	hypothetical protein	NA	NA	NA	NA
WP_015588970.1\|376415_378884_+\|tRNA	valine--tRNA ligase	A0A2K9KZB8	Tupanvirus	2.3e-253	52.3
WP_179943639.1\|378945_379827_+	hypothetical protein	NA	NA	NA	NA
WP_041573506.1\|379757_380531_+	hypothetical protein	NA	NA	NA	NA
WP_015588973.1\|380687_382010_+	hypothetical protein	NA	NA	NA	NA
WP_006280567.1\|382040_382715_+	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA
WP_015588974.1\|382764_383562_+	hypothetical protein	NA	NA	NA	NA
WP_010962608.1\|383754_384048_-	hypothetical protein	NA	NA	NA	NA
WP_015588975.1\|384096_385296_+\|capsid	phage major capsid protein	S5FUW7	Shigella_phage	2.4e-51	32.9
WP_010962606.1\|385686_386328_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.5e-26	36.8
WP_007548901.1\|386311_386959_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_015588976.1\|386958_387693_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015588977.1\|387818_388274_+	arginine repressor	NA	NA	NA	NA
WP_015588978.1\|388327_389089_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	9.3e-49	44.6
WP_015588979.1\|389085_390183_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_015588980.1\|390354_390789_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_015588981.1\|390763_391177_+	hypothetical protein	NA	NA	NA	NA
WP_015588983.1\|392478_393654_-\|tRNA	CCA tRNA nucleotidyltransferase	A0A2L0UZ92	Agrobacterium_phage	2.2e-52	34.5

DBSCAN-SWA_4

405775 : 473904

Wolbachia_phage(88.64%)

plate,terminase,tRNA,head,portal,transposase,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015588991.1\|405775_407428_-	recombinase family protein	E9P5U5	Wolbachia_endosymbiont_wVitA_of_Nasonia_vitripennis_phage	2.2e-308	98.0
WP_017532679.1\|407336_407612_-	hypothetical protein	A0A1B2LRU8	Wolbachia_phage	3.3e-44	98.9
WP_015588273.1\|407710_408181_-	ankyrin repeat domain-containing protein	A0A1B2LRV4	Wolbachia_phage	3.9e-29	86.5
WP_015588992.1\|408219_408930_-	ankyrin repeat domain-containing protein	A0A1B2LRT4	Wolbachia_phage	2.7e-74	80.6
WP_015588993.1\|409098_410259_-\|tail	phage tail protein	Q9JML5	Wolbachia_phage	4.1e-213	92.7
WP_015588994.1\|410258_411059_-\|plate	baseplate J/gp47 family protein	Q9JML6	Wolbachia_phage	7.1e-116	82.5
WP_015588922.1\|411061_411397_-	GPW/gp25 family protein	E9P610	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	9.1e-41	73.9
WP_015588921.1\|411393_411648_-	PAAR domain-containing protein	A0A1B2LRW2	Wolbachia_phage	3.6e-13	75.6
WP_015588920.1\|411650_412115_-\|plate	phage baseplate assembly protein V	Q9JML8	Wolbachia_phage	9.0e-63	77.3
WP_015588919.1\|412101_412575_-	hypothetical protein	Q75QM3	Wolbachia_phage	6.6e-61	71.3
WP_010962479.1\|412581_413079_-\|tail	phage tail protein	Q75QM4	Wolbachia_phage	8.9e-24	45.1
WP_010082171.1\|414610_414871_-	hypothetical protein	Q9JMM1	Wolbachia_phage	9.6e-22	71.8
WP_015588918.1\|414961_415963_-\|capsid	major capsid protein	Q9JMM2	Wolbachia_phage	1.6e-186	94.9
WP_015588995.1\|416040_416412_-\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	2.2e-51	86.9
WP_015588996.1\|416479_417514_-	S49 family peptidase	F8QZT1	Wolbachia_phage	4.6e-176	98.2
WP_015588997.1\|417513_418920_-\|portal	phage portal protein	Q9JMM5	Wolbachia_phage	2.1e-264	96.1
WP_015588998.1\|419109_420936_-\|terminase	phage terminase large subunit family protein	A0A1B2LRQ2	Wolbachia_phage	0.0e+00	95.2
WP_015588999.1\|420932_422417_-	ankyrin repeat domain-containing protein	F8QZT5	Wolbachia_phage	6.6e-200	88.1
WP_015589000.1\|422435_422918_-	hypothetical protein	Q9JMM9	Wolbachia_phage	1.3e-72	93.6
WP_041573510.1\|423101_424994_-	hypothetical protein	NA	NA	NA	NA
WP_015589002.1\|425127_426348_-	DNA modification methylase	E9P620	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.1e-224	94.6
WP_041573511.1\|426451_426904_-	Holliday junction DNA helicase	Q9JMN0	Wolbachia_phage	1.5e-70	85.3
WP_010962699.1\|427486_427981_+	sigma-70 family RNA polymerase sigma factor	A0A1B2LRS7	Wolbachia_phage	3.3e-39	54.0
WP_015589003.1\|428075_428897_+	ATP-binding protein	E9P631	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.6e-131	85.3
WP_015589004.1\|428908_429697_+	AAA family ATPase	A0A1B2LRS1	Wolbachia_phage	6.8e-127	84.9
WP_010962695.1\|429734_430235_+	hypothetical protein	A0A1B2LRU0	Wolbachia_phage	1.6e-68	79.6
WP_015589005.1\|430231_431470_+	AAA family ATPase	A0A1B2LRQ9	Wolbachia_phage	1.2e-125	59.0
WP_015589006.1\|431487_433536_+	AAA family ATPase	Q9JMN6	Wolbachia_phage	1.4e-240	74.4
WP_015589007.1\|433626_434310_+	hypothetical protein	A0A1B2LRU4	Wolbachia_phage	1.6e-103	82.8
WP_015589008.1\|434316_436251_+	DUF4815 domain-containing protein	Q75QL6	Wolbachia_phage	0.0e+00	96.0
WP_015589009.1\|436255_437440_+	hypothetical protein	A0A1B2LRR4	Wolbachia_phage	2.3e-203	89.7
WP_015589010.1\|437444_437639_+	hypothetical protein	A0A1B2LRW5	Wolbachia_phage	1.6e-21	75.0
WP_015589011.1\|437635_439090_+	hypothetical protein	Q75QL4	Wolbachia_phage	5.3e-186	85.1
WP_015589012.1\|439100_439652_+	hypothetical protein	Q75QL3	Wolbachia_phage	5.0e-44	54.6
WP_015589013.1\|439644_440832_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A1B2LRR3	Wolbachia_phage	1.6e-204	91.9
WP_015589014.1\|440843_441350_+\|tail	phage major tail tube protein	A0A1B2LRS4	Wolbachia_phage	4.4e-87	93.5
WP_015589016.1\|441951_442209_+\|tail	phage tail assembly protein	A0A1B2LRV6	Wolbachia_phage	3.6e-37	98.8
WP_015589017.1\|442318_444583_+\|tail	phage tail tape measure protein	E9P5Y8	Wolbachia_endosymbiont_wVitA_of_Nasonia_vitripennis_phage	1.8e-241	65.9
WP_015589018.1\|444582_444930_+\|tail	phage tail protein	A0A1B2LRV9	Wolbachia_phage	3.1e-44	73.7
WP_015589019.1\|444926_445136_+\|tail	tail protein X	A0A1B2LRT9	Wolbachia_phage	2.8e-24	73.9
WP_015589020.1\|445136_446081_+	phage late control protein GpD	A0A1B2LRT8	Wolbachia_phage	2.1e-135	75.1
WP_015589021.1\|446133_446667_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_015589022.1\|446734_446956_+	hypothetical protein	A0A1B2LRU2	Wolbachia_phage	4.3e-15	63.0
WP_015589023.1\|447969_448905_-	helix-turn-helix transcriptional regulator	A0A1B2LRR7	Wolbachia_phage	4.0e-158	95.4
WP_015589024.1\|448994_449930_-	helix-turn-helix domain-containing protein	A0A1B2LRR8	Wolbachia_phage	3.4e-141	89.2
WP_015589025.1\|449997_451815_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	0.0e+00	92.9
WP_144054589.1\|452209_452323_+	hypothetical protein	NA	NA	NA	NA
WP_138317925.1\|452799_453057_+\|transposase	transposase	NA	NA	NA	NA
WP_015589027.1\|455768_457256_-	hypothetical protein	NA	NA	NA	NA
WP_015589028.1\|457286_467603_-	hypothetical protein	NA	NA	NA	NA
WP_015589029.1\|467612_471530_-	hypothetical protein	NA	NA	NA	NA
WP_015589030.1\|472482_473904_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_5

482114 : 533592

Wolbachia_phage(20.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015589039.1\|482114_484454_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_015589040.1\|484444_487099_-	hypothetical protein	NA	NA	NA	NA
WP_015589041.1\|487157_490517_-\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	2.7e-172	33.4
WP_015589042.1\|490693_492160_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	3.1e-40	29.8
WP_010962578.1\|492299_493619_-\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_167482809.1\|493849_493993_+	hypothetical protein	NA	NA	NA	NA
WP_010082641.1\|494187_494616_-	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_006279887.1\|494671_495652_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
WP_006279888.1\|496060_496984_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_015589043.1\|496991_498254_-	MFS transporter	Q6JIH2	Burkholderia_virus	8.8e-36	27.3
WP_015589044.1\|498315_500118_-\|tRNA	aspartate--tRNA ligase	A0A1V0SAC0	Catovirus	7.2e-07	22.5
WP_006279891.1\|500314_500746_+	hypothetical protein	NA	NA	NA	NA
WP_015589045.1\|500749_501373_+	heme ABC exporter ATP-binding protein CcmA	NA	NA	NA	NA
WP_015589046.1\|502417_503713_+	Na+/H+ antiporter	NA	NA	NA	NA
WP_038198869.1\|504362_504647_+\|transposase	transposase	NA	NA	NA	NA
WP_095866567.1\|504668_505010_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	7.2e-09	42.5
WP_081600771.1\|505248_505413_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_015589047.1\|505909_506773_-	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA
WP_015589048.1\|507143_507650_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	7.6e-31	47.8
WP_006279326.1\|507718_507910_+	zinc-finger domain-containing protein	NA	NA	NA	NA
WP_015589049.1\|507926_508553_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_015589050.1\|508542_509238_-	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	1.9e-19	47.0
WP_080717616.1\|509350_509437_+	hypothetical protein	NA	NA	NA	NA
WP_015589051.1\|509513_510071_-	ribosome recycling factor	NA	NA	NA	NA
WP_015589052.1\|510078_510822_-	UMP kinase	NA	NA	NA	NA
WP_015589053.1\|510832_511693_-	elongation factor Ts	NA	NA	NA	NA
WP_015589054.1\|511673_512522_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_015589055.1\|512919_513291_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	3.9e-16	50.0
WP_015589056.1\|513371_515183_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1GV45	Paramecium_bursaria_Chlorella_virus	9.9e-97	37.2
WP_015589057.1\|515489_516422_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	2.5e-88	63.3
WP_070356842.1\|516536_516728_-	hypothetical protein	NA	NA	NA	NA
WP_015589058.1\|516824_517712_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_015589059.1\|517702_518581_-	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_015589060.1\|519702_520875_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA
WP_179943641.1\|523553_526160_+	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_015589063.1\|526163_527093_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_015589064.1\|527429_528071_-	fructose-6-phosphate aldolase	I3ULK3	Synechococcus_phage	1.5e-44	45.2
WP_041573517.1\|528110_528452_-	hypothetical protein	A0A1B2LRQ3	Wolbachia_phage	3.8e-10	52.2
WP_041573518.1\|528817_529102_+\|transposase	transposase	NA	NA	NA	NA
WP_095866555.1\|529103_529457_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.3e-08	42.5
WP_081600772.1\|529694_529859_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_081600773.1\|529973_530072_+	hypothetical protein	NA	NA	NA	NA
WP_015589065.1\|530335_531220_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	1.0e-102	62.1
WP_015588908.1\|532503_533592_-\|transposase	IS481-like element ISWpi2 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	4.6e-174	81.8

DBSCAN-SWA_6

541585 : 674881

117

Bacillus_phage(17.95%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038198869.1\|541585_541870_+\|transposase	transposase	NA	NA	NA	NA
WP_095866555.1\|541871_542225_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.3e-08	42.5
WP_081600772.1\|542463_542628_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_015589069.1\|542786_544493_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_015589070.1\|544586_544946_-	hypothetical protein	NA	NA	NA	NA
WP_015589071.1\|545032_545626_-	hypothetical protein	NA	NA	NA	NA
WP_015589072.1\|546524_548180_-	hypothetical protein	NA	NA	NA	NA
WP_015589073.1\|548406_550116_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	1.4e-52	29.0
WP_015589074.1\|551119_551983_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.6e-92	63.7
WP_015589075.1\|552177_553293_-	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA
WP_010962557.1\|553289_554006_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_015589076.1\|554059_554923_-	lipoyl synthase	NA	NA	NA	NA
WP_006279619.1\|554915_555230_-	50S ribosomal protein L28	NA	NA	NA	NA
WP_010082513.1\|555267_555609_-	DUF721 domain-containing protein	NA	NA	NA	NA
WP_007552114.1\|556056_556257_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_010962555.1\|556383_556998_-	30S ribosomal protein S4	NA	NA	NA	NA
WP_015589077.1\|557111_559100_+	transketolase	NA	NA	NA	NA
WP_167482804.1\|559117_559372_+	hypothetical protein	NA	NA	NA	NA
WP_015589078.1\|559427_561026_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_015589079.1\|561159_562323_-	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_015589080.1\|562508_563375_-	hypothetical protein	A0A1B2LRR2	Wolbachia_phage	1.7e-25	35.5
WP_015589081.1\|563432_566759_-	glycoside hydrolase TIM-barrel-like domain-containing protein	A0A0B5A7K5	Paracoccus_phage	5.1e-115	28.5
WP_015589082.1\|567197_568220_+	hypothetical protein	NA	NA	NA	NA
WP_006280485.1\|568225_568783_-	dCTP deaminase	S5VM63	Pseudomonas_phage	1.5e-56	62.7
WP_015589083.1\|568924_569941_+	substrate-binding domain-containing protein	A0A1B1IWY0	uncultured_Mediterranean_phage	2.6e-62	39.2
WP_015589084.1\|570020_571007_-	hypothetical protein	NA	NA	NA	NA
WP_167482803.1\|571102_571273_-	hypothetical protein	NA	NA	NA	NA
WP_015589085.1\|571414_572875_+	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_015589086.1\|573130_574501_-	magnesium transporter	NA	NA	NA	NA
WP_141456981.1\|574654_575758_+	peptide chain release factor 2	NA	NA	NA	NA
WP_010082072.1\|575938_576103_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1
WP_010082071.1\|576095_576257_-	hypothetical protein	U5P429	Shigella_phage	8.6e-05	52.2
WP_081600776.1\|576260_576608_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.1e-08	39.4
WP_041573521.1\|576696_576981_-\|transposase	transposase	NA	NA	NA	NA
WP_006280935.1\|577059_577818_-	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-20	33.3
WP_010962542.1\|577814_578600_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_153801318.1\|578746_578923_-	hypothetical protein	NA	NA	NA	NA
WP_015589087.1\|579006_580041_-	Fic family protein	NA	NA	NA	NA
WP_015589088.1\|580210_581203_-	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_010082539.1\|581208_581388_-	hypothetical protein	NA	NA	NA	NA
WP_010962536.1\|581519_582320_-	metal ABC transporter permease	NA	NA	NA	NA
WP_015589089.1\|582321_582678_-	Mth938-like domain-containing protein	NA	NA	NA	NA
WP_015589090.1\|582681_583548_-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_015589091.1\|583629_586890_+	UvrD-helicase domain-containing protein	G3MA40	Bacillus_virus	9.3e-13	24.8
WP_141457347.1\|587144_587240_+	hypothetical protein	NA	NA	NA	NA
WP_015589092.1\|587296_587971_-	DNA repair protein RadC	A0A1B2LRS6	Wolbachia_phage	1.0e-46	43.2
WP_065094818.1\|587945_588125_-	hypothetical protein	NA	NA	NA	NA
WP_015589093.1\|588318_588915_-	RDD family protein	NA	NA	NA	NA
WP_015589094.1\|589136_590588_+	replicative DNA helicase	A0A218KST2	Xenohaliotis_phage	3.0e-72	37.6
WP_179943640.1\|590703_590964_+	hypothetical protein	NA	NA	NA	NA
WP_041573589.1\|591280_592153_+	hypothetical protein	NA	NA	NA	NA
WP_015589097.1\|592226_593864_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	7.1e-94	36.0
WP_010082521.1\|594003_594444_+	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_015589098.1\|594455_595631_-	multifunctional ribose 5-phosphate isomerase B/3-demethylubiquinone-9 3-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	A0A1B1IVA4	uncultured_Mediterranean_phage	5.2e-06	28.3
WP_080717604.1\|595865_595922_+	hypothetical protein	NA	NA	NA	NA
WP_015589099.1\|596531_598280_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.9e-61	33.9
WP_006280480.1\|598517_599600_+	Fic family protein	A0A1V0E025	Clostridioides_phage	4.6e-09	26.5
WP_010082072.1\|600993_601158_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1
WP_010082071.1\|601150_601312_-	hypothetical protein	U5P429	Shigella_phage	8.6e-05	52.2
WP_144054591.1\|601315_601738_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.4e-09	36.4
WP_081600778.1\|601691_602045_-\|transposase	transposase	NA	NA	NA	NA
WP_015589100.1\|602332_602647_-	septum formation initiator family protein	NA	NA	NA	NA
WP_006279631.1\|602696_602825_-	50S ribosomal protein L36	NA	NA	NA	NA
WP_015589101.1\|602874_603705_-	kinase/pyrophosphorylase	NA	NA	NA	NA
WP_015589102.1\|603840_604551_+	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_015589103.1\|604577_604904_+	hypothetical protein	NA	NA	NA	NA
WP_015589104.1\|604857_606453_-	hypothetical protein	A0A1B2LRR2	Wolbachia_phage	8.4e-100	58.1
WP_015589105.1\|606633_607911_+	adenylosuccinate synthase	A0A2L2DKW2	Acanthamoeba_polyphaga_mimivirus	9.2e-57	32.5
WP_007550159.1\|611593_611857_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_015589106.1\|611834_612431_+	septum formation protein Maf	NA	NA	NA	NA
WP_015589107.1\|612422_615101_-	hypothetical protein	NA	NA	NA	NA
WP_015589108.1\|615447_616791_-	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_141456975.1\|616812_617040_+	hypothetical protein	NA	NA	NA	NA
WP_007552972.1\|617248_617518_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_007549647.1\|617637_617964_+\|transposase	transposase	NA	NA	NA	NA
WP_081600779.1\|617902_618193_+\|transposase	transposase	NA	NA	NA	NA
WP_015589109.1\|618349_618853_-	hypothetical protein	NA	NA	NA	NA
WP_015589110.1\|619526_621176_-	chaperonin GroEL	A0A240F779	uncultured_virus	2.2e-127	47.5
WP_173862882.1\|621276_621558_-	co-chaperone GroES	A0A221S3F7	uncultured_virus	3.5e-09	38.9
WP_015589111.1\|621742_622549_+	folate-binding protein YgfZ	NA	NA	NA	NA
WP_015589112.1\|623629_625369_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	3.6e-64	31.6
WP_041573526.1\|625429_625651_-	hypothetical protein	NA	NA	NA	NA
WP_174516867.1\|626654_627905_-	cbb3-type cytochrome c oxidase subunit I	NA	NA	NA	NA
WP_015589115.1\|629478_631932_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	4.5e-201	47.4
WP_015589116.1\|631947_633225_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.8e-108	51.6
WP_006280254.1\|633224_633851_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	5.7e-60	60.9
WP_015589117.1\|633862_635197_-	trigger factor	NA	NA	NA	NA
WP_006279461.1\|635577_636174_+	BON domain-containing protein	NA	NA	NA	NA
WP_015589118.1\|636234_637164_+	glutathione synthase	NA	NA	NA	NA
WP_015589119.1\|637148_638180_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA
WP_015589120.1\|638249_638642_+	hypothetical protein	NA	NA	NA	NA
WP_015589121.1\|638647_640021_-	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	2.5e-44	28.6
WP_051062205.1\|640096_640402_-\|transposase	transposase	Q75QL1	Wolbachia_phage	1.1e-13	46.2
WP_153296805.1\|640850_641018_-	hypothetical protein	NA	NA	NA	NA
WP_015589122.1\|641718_643806_+	hypothetical protein	NA	NA	NA	NA
WP_010082383.1\|644310_644511_+	hypothetical protein	NA	NA	NA	NA
WP_051062209.1\|644530_644938_+\|transposase	transposase	NA	NA	NA	NA
WP_015589123.1\|645232_648358_-	AsmA-like C-terminal domain-containing protein	NA	NA	NA	NA
WP_015589124.1\|648350_648788_-	ribonuclease HI	J9Q745	Salmonella_phage	7.8e-32	43.4
WP_015589125.1\|648964_649852_-	protoheme IX farnesyltransferase	NA	NA	NA	NA
WP_015589126.1\|649853_651404_-	cytochrome c oxidase subunit I	R9VX24	Flavobacterium_phage	4.1e-11	35.0
WP_015589127.1\|651419_652184_-	cytochrome c oxidase subunit II	NA	NA	NA	NA
WP_081600772.1\|653557_653722_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_095866567.1\|653960_654302_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	7.2e-09	42.5
WP_015589128.1\|656673_657585_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	9.2e-128	81.4
WP_141457345.1\|657573_658461_-	hypothetical protein	NA	NA	NA	NA
WP_015589130.1\|658639_659125_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_015589131.1\|659933_662537_-	ankyrin repeat domain-containing protein	A0A2H4X2Q6	Flamingopox_virus	1.2e-05	24.6
WP_015589132.1\|662777_664634_-	hypothetical protein	NA	NA	NA	NA
WP_015589133.1\|665266_666115_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_015589134.1\|666326_669056_+	ankyrin repeat domain-containing protein	Q9JML0	Wolbachia_phage	1.7e-100	44.4
WP_081600772.1\|669427_669592_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_095866567.1\|669830_670172_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	7.2e-09	42.5
WP_015589135.1\|670620_672141_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_015589136.1\|672407_673142_+	3-oxoacyl-[acyl-carrier-protein] reductase	F2NZ40	Diadromus_pulchellus_ascovirus	1.1e-11	26.1
WP_007550269.1\|673237_673573_+	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_012673175.1\|673600_674881_-\|protease	M48 family metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_7

784754 : 834440

Tupanvirus(12.5%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015589198.1\|784754_786077_+\|tRNA	glutamate--tRNA ligase	A0A2K9L0I5	Tupanvirus	1.3e-13	34.0
WP_015589199.1\|786883_790213_+	DNA polymerase III subunit alpha	A0A0K1Y906	Streptomyces_phage	9.4e-170	35.3
WP_015589200.1\|790261_791035_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_007548890.1\|791034_791310_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_015589201.1\|791317_791872_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_015589202.1\|792108_793401_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	3.8e-18	27.1
WP_015589203.1\|793643_794924_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_015589204.1\|794966_796163_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
WP_006279797.1\|796280_796919_-	endonuclease III	NA	NA	NA	NA
WP_015589205.1\|796946_798383_-	isocitrate dehydrogenase	NA	NA	NA	NA
WP_006279799.1\|798528_799065_+	RDD family protein	NA	NA	NA	NA
WP_006279800.1\|799087_799564_+	RDD family protein	NA	NA	NA	NA
WP_007549497.1\|799730_801134_-	transcription termination factor Rho	NA	NA	NA	NA
WP_015589206.1\|801333_801936_-	DUF1013 domain-containing protein	NA	NA	NA	NA
WP_015589207.1\|802267_804076_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_006279266.1\|804476_804797_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_015589208.1\|804807_805794_+	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_015589209.1\|805855_806425_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_006280207.1\|806442_807441_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_012673268.1\|807616_808378_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_015589210.1\|808379_808907_-	cytochrome c family protein	NA	NA	NA	NA
WP_041573564.1\|812056_813385_-\|transposase	IS4-like element ISWosp9 family transposase	NA	NA	NA	NA
WP_015589211.1\|813792_815061_+\|tRNA	proline--tRNA ligase	A0A1V0SEQ8	Hokovirus	4.0e-12	21.7
WP_007549151.1\|815057_815414_+	holo-[acyl-carrier-protein] synthase	NA	NA	NA	NA
WP_041573531.1\|815774_817271_+	cation:proton antiporter	NA	NA	NA	NA
WP_015589213.1\|817267_817921_-	type IV secretion system protein VirB8	NA	NA	NA	NA
WP_015589214.1\|817989_818784_-	hypothetical protein	NA	NA	NA	NA
WP_015589215.1\|818857_819679_-	DNA polymerase III, delta' subunit	A0A1U9WR92	Streptococcus_virus	1.6e-06	22.6
WP_015589216.1\|819696_820284_-	threonylcarbamoyl-AMP synthase	A0A291ATS8	Pandoravirus	9.8e-14	27.6
WP_015589217.1\|820402_820873_-	hypothetical protein	NA	NA	NA	NA
WP_015589218.1\|820948_821833_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_015589219.1\|821829_822660_-	hypothetical protein	A0A1B2LRR2	Wolbachia_phage	2.5e-55	39.3
WP_015589220.1\|822956_824978_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA
WP_007549783.1\|825831_826119_+	hypothetical protein	NA	NA	NA	NA
WP_010962863.1\|826134_826710_-	hypothetical protein	NA	NA	NA	NA
WP_015589221.1\|826793_827129_-	divalent-cation tolerance protein CutA	NA	NA	NA	NA
WP_174517030.1\|827456_828074_-\|transposase	transposase	NA	NA	NA	NA
WP_141456678.1\|828075_828405_-\|transposase	transposase	NA	NA	NA	NA
WP_015589223.1\|830735_830951_+	hypothetical protein	NA	NA	NA	NA
WP_006279849.1\|831033_832068_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_015589224.1\|832070_832943_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_015589225.1\|832946_834440_+\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	1.5e-18	27.2

DBSCAN-SWA_8

882869 : 1009981

114

Bacillus_virus(13.64%)

protease,terminase,tRNA,portal,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015589250.1\|882869_884405_+\|tRNA	lysine--tRNA ligase	NA	NA	NA	NA
WP_015589251.1\|884930_887552_-\|tRNA	alanine--tRNA ligase	A0A2K9L1X7	Tupanvirus	6.9e-75	37.2
WP_015589252.1\|887717_888161_+	PAS domain-containing protein	NA	NA	NA	NA
WP_015589253.1\|888259_888466_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_015589254.1\|888486_888852_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_015589255.1\|888864_889764_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	1.1e-11	38.9
WP_015589256.1\|889844_891356_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.7e-65	45.6
WP_015589257.1\|892105_893626_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_015589258.1\|893665_894646_-	ACP S-malonyltransferase	NA	NA	NA	NA
WP_007548602.1\|894774_894978_+	50S ribosomal protein L31	NA	NA	NA	NA
WP_015589259.1\|895016_895811_+	NAD kinase	NA	NA	NA	NA
WP_081600790.1\|895743_895986_-	hypothetical protein	NA	NA	NA	NA
WP_041573604.1\|896279_897590_+	hypothetical protein	NA	NA	NA	NA
WP_015589261.1\|899423_901697_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_006279944.1\|901711_901984_-	30S ribosomal protein S15	NA	NA	NA	NA
WP_012673289.1\|901996_902257_-	hypothetical protein	NA	NA	NA	NA
WP_012673282.1\|902552_902900_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_015589262.1\|902907_903948_+	hypothetical protein	NA	NA	NA	NA
WP_015589263.1\|903931_904318_+	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_015589264.1\|905653_906391_-	putative folate metabolism gamma-glutamate ligase	NA	NA	NA	NA
WP_015589265.1\|906392_906872_-	dihydrofolate reductase	G3MBI7	Bacillus_virus	2.3e-13	33.8
WP_007548841.1\|908149_908536_-	dihydroneopterin aldolase	NA	NA	NA	NA
WP_015589268.1\|908575_909232_-	CADD family putative folate metabolism protein	NA	NA	NA	NA
WP_015589269.1\|909421_909745_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	7.5e-16	43.3
WP_015589270.1\|909861_910482_-	3'-5' exonuclease	NA	NA	NA	NA
WP_015589271.1\|912726_915390_-	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_015589272.1\|915489_918504_+	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	3.8e-61	27.3
WP_015589273.1\|918599_919112_+	hypothetical protein	NA	NA	NA	NA
WP_015589274.1\|919746_922542_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	57.8
WP_015589275.1\|922596_923241_+	hypothetical protein	NA	NA	NA	NA
WP_015589276.1\|923356_924067_+	ComF family protein	NA	NA	NA	NA
WP_015589277.1\|924037_925483_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA
WP_012673299.1\|925457_926699_-	cystathionine beta-lyase	NA	NA	NA	NA
WP_007549117.1\|926706_926991_-	BolA family transcriptional regulator	NA	NA	NA	NA
WP_015589278.1\|927061_928984_-	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	7.4e-151	50.5
WP_015589279.1\|929070_930843_-	Rne/Rng family ribonuclease	NA	NA	NA	NA
WP_015589280.1\|930992_931193_+	50S ribosomal protein L33	NA	NA	NA	NA
WP_010082632.1\|931218_931494_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_015589281.1\|931550_932432_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015589282.1\|932423_933164_+	metal ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	6.1e-13	30.9
WP_012673305.1\|933160_934591_+	2-polyprenylphenol 6-hydroxylase	A0A0R6PHP6	Moraxella_phage	1.0e-19	23.7
WP_049973597.1\|935007_935343_-\|transposase	transposase	NA	NA	NA	NA
WP_022626382.1\|935510_935858_-\|transposase	transposase	NA	NA	NA	NA
WP_015589283.1\|936160_937774_-	hypothetical protein	NA	NA	NA	NA
WP_179943636.1\|939437_939575_+	hypothetical protein	NA	NA	NA	NA
WP_141456678.1\|939559_939889_+\|transposase	transposase	NA	NA	NA	NA
WP_174517030.1\|939890_940508_+\|transposase	transposase	NA	NA	NA	NA
WP_015589284.1\|940856_941834_-	quinone oxidoreductase	NA	NA	NA	NA
WP_015589285.1\|941952_942651_+	hypothetical protein	NA	NA	NA	NA
WP_015589286.1\|942904_943441_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_015589287.1\|943441_944164_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_015589288.1\|944243_945008_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_012673308.1\|945100_945595_+	Smr/MutS family protein	NA	NA	NA	NA
WP_010962945.1\|946478_947513_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_015589289.1\|947653_948106_+	hypothetical protein	NA	NA	NA	NA
WP_007552972.1\|948426_948696_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_007549647.1\|948815_949142_+\|transposase	transposase	NA	NA	NA	NA
WP_081600779.1\|949080_949371_+\|transposase	transposase	NA	NA	NA	NA
WP_015589290.1\|949584_950859_-	amino acid permease	NA	NA	NA	NA
WP_015589291.1\|950994_952440_+	hypothetical protein	NA	NA	NA	NA
WP_015589292.1\|952640_953807_+	aspartate kinase	NA	NA	NA	NA
WP_007549940.1\|953898_954102_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_022626388.1\|954295_954517_+	hypothetical protein	NA	NA	NA	NA
WP_015589293.1\|955046_956963_-	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	6.5e-115	38.0
WP_015589294.1\|957063_957477_-	hypothetical protein	NA	NA	NA	NA
WP_015589295.1\|957701_958289_+	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA
WP_010962953.1\|958279_958588_+	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA
WP_015589296.1\|958592_960443_+	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA
WP_015589297.1\|960446_961889_+	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA
WP_015589298.1\|961885_963250_+	NADH-quinone oxidoreductase subunit N	NA	NA	NA	NA
WP_015589299.1\|963267_964140_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_179943637.1\|964136_964274_+	hypothetical protein	NA	NA	NA	NA
WP_015589300.1\|964257_964650_+	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_015589301.1\|964727_965159_-	hypothetical protein	NA	NA	NA	NA
WP_015589302.1\|965262_965631_-	hypothetical protein	NA	NA	NA	NA
WP_015589303.1\|965740_967228_-	hypothetical protein	NA	NA	NA	NA
WP_015589304.1\|967936_969199_+	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_015589305.1\|969227_969746_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.4e-08	34.6
WP_015589306.1\|969758_971660_-\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	3.8e-131	38.2
WP_144054593.1\|971656_971872_-	hypothetical protein	NA	NA	NA	NA
WP_041573606.1\|971987_972470_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA
WP_015589308.1\|972692_974021_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_015589309.1\|974324_975341_+	NAD(P)/FAD-dependent oxidoreductase	G3MA85	Bacillus_virus	5.5e-20	28.6
WP_015589310.1\|976076_977033_-	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_015589311.1\|977025_978063_-	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_041573607.1\|978073_978256_-	50S ribosomal protein L32	NA	NA	NA	NA
WP_015589313.1\|978595_979378_+	ABC transporter permease	NA	NA	NA	NA
WP_015589314.1\|979370_980072_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	8.7e-25	35.7
WP_007548965.1\|980392_980890_+	hypothetical protein	NA	NA	NA	NA
WP_015589315.1\|980972_982136_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_015589316.1\|982426_983326_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	7.3e-101	68.3
WP_015589317.1\|983360_984608_-	IscS subfamily cysteine desulfurase	H7BUW1	unidentified_phage	2.3e-36	39.1
WP_015589318.1\|984894_986313_-\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_015589319.1\|986530_987022_+	hypothetical protein	NA	NA	NA	NA
WP_015589320.1\|987266_987974_+	uroporphyrinogen-III synthase	NA	NA	NA	NA
WP_015589321.1\|987973_988753_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_015589322.1\|988789_989812_-	hypothetical protein	NA	NA	NA	NA
WP_015589323.1\|989862_992439_-	DNA polymerase I	A0A1B1IST8	uncultured_Mediterranean_phage	6.6e-46	31.5
WP_081600771.1\|992653_992818_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_095866567.1\|993056_993398_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	7.2e-09	42.5
WP_041573539.1\|993419_993704_-\|transposase	transposase	NA	NA	NA	NA
WP_015589324.1\|993936_994743_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_015589325.1\|994748_995393_-	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_015589326.1\|995790_996156_-	hypothetical protein	NA	NA	NA	NA
WP_015589327.1\|996277_997945_-	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	3.6e-85	35.7
WP_015589328.1\|997953_999876_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_015589329.1\|1000289_1001777_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA
WP_015589330.1\|1001780_1004324_+	hypothetical protein	NA	NA	NA	NA
WP_015589331.1\|1004378_1005572_-\|portal	phage portal protein	W8ECU7	Geobacillus_phage	9.7e-85	44.1
WP_080717643.1\|1005807_1006071_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012673333.1\|1006046_1006280_-	hypothetical protein	NA	NA	NA	NA
WP_015589332.1\|1006531_1007149_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_015589333.1\|1007148_1008174_+	LD-carboxypeptidase	NA	NA	NA	NA
WP_015589334.1\|1008517_1009981_-\|terminase	phage terminase large subunit	A0A0N9RQZ8	Pseudomonas_phage	1.4e-56	32.4

DBSCAN-SWA_9

1049932 : 1086045

Salicola_phage(20.0%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141456678.1\|1049932_1050262_+\|transposase	transposase	NA	NA	NA	NA
WP_081600794.1\|1050245_1050881_+\|transposase	transposase	NA	NA	NA	NA
WP_015589361.1\|1051261_1051963_+	P44/Msp2 family outer membrane protein	NA	NA	NA	NA
WP_015589362.1\|1052281_1053175_+	RNA polymerase factor sigma-32	A0A248SJA5	Salicola_phage	4.1e-27	29.4
WP_015589363.1\|1053167_1053665_+	hypothetical protein	NA	NA	NA	NA
WP_041573541.1\|1053780_1054938_+	DNA polymerase III subunit beta	R9TRR6	Rhizobium_phage	8.0e-52	36.4
WP_015589365.1\|1055026_1055764_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_007550541.1\|1055805_1055958_-\|transposase	transposase	NA	NA	NA	NA
WP_010963022.1\|1056242_1057001_-	cytochrome c1	NA	NA	NA	NA
WP_006280242.1\|1057348_1058578_-	cytochrome b/b6	NA	NA	NA	NA
WP_015589366.1\|1060469_1060829_-	DnaJ domain-containing protein	NA	NA	NA	NA
WP_015589367.1\|1060890_1061463_+	NifU family protein	A0A218MN08	uncultured_virus	5.6e-06	32.9
WP_015589368.1\|1061459_1062683_+\|tRNA	histidine--tRNA ligase	A0A2I2L577	Orpheovirus	4.7e-26	27.4
WP_015589369.1\|1062707_1063460_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.4e-25	29.8
WP_015589370.1\|1064757_1066101_-	signal recognition particle protein	NA	NA	NA	NA
WP_015589371.1\|1066085_1067645_-	oxidoreductase	NA	NA	NA	NA
WP_015589372.1\|1067948_1070810_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_006279640.1\|1070855_1071287_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_015589373.1\|1071291_1071843_-	OmpH family outer membrane protein	NA	NA	NA	NA
WP_015589374.1\|1071843_1074180_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_012673365.1\|1074188_1075307_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_006279484.1\|1075406_1075685_+	succinate dehydrogenase assembly factor 2	NA	NA	NA	NA
WP_010082086.1\|1075659_1075986_-	cell division protein ZapA	NA	NA	NA	NA
WP_010963035.1\|1076058_1076337_-	integration host factor subunit beta	NA	NA	NA	NA
WP_015589375.1\|1076366_1078019_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_012673367.1\|1078158_1078824_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_015589376.1\|1079300_1079948_-	heme exporter protein CcmB	NA	NA	NA	NA
WP_010963040.1\|1080054_1080447_+	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_015589377.1\|1081896_1082106_-	hypothetical protein	NA	NA	NA	NA
WP_015589378.1\|1082237_1083563_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_015589379.1\|1083559_1084081_+	disulfide bond formation protein B	NA	NA	NA	NA
WP_015589380.1\|1084055_1084598_+	demethoxyubiquinone hydroxylase family protein	NA	NA	NA	NA
WP_081600794.1\|1085096_1085732_-\|transposase	transposase	NA	NA	NA	NA
WP_141456678.1\|1085715_1086045_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_10

1162726 : 1226071

Hokovirus(13.33%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006280198.1\|1162726_1163281_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_006280200.1\|1163282_1164773_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A2H5BJT2	Erwinia_phage	4.7e-36	30.0
WP_015589432.1\|1164841_1165783_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_015589433.1\|1165775_1166567_-	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_006279836.1\|1166712_1166973_+	acyl carrier protein	NA	NA	NA	NA
WP_015589434.1\|1166986_1168258_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_010963091.1\|1168497_1169334_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_015589435.1\|1169489_1170767_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_015589436.1\|1170776_1171631_+	FAD-dependent thymidylate synthase	M4QT16	Loktanella_phage	3.9e-80	53.3
WP_015589437.1\|1171703_1173488_-	hypothetical protein	NA	NA	NA	NA
WP_015589438.1\|1173632_1175975_+	primosomal protein N'	NA	NA	NA	NA
WP_015589439.1\|1175984_1176584_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA
WP_015589440.1\|1176670_1179379_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	6.6e-89	35.9
WP_015589441.1\|1180344_1181220_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_006279825.1\|1181388_1181778_-	DUF1284 domain-containing protein	NA	NA	NA	NA
WP_015589442.1\|1181774_1182302_-	biotin transporter BioY	NA	NA	NA	NA
WP_006279823.1\|1182387_1182975_+	nitroreductase family protein	NA	NA	NA	NA
WP_015589443.1\|1182955_1183744_+	diaminopimelate epimerase	NA	NA	NA	NA
WP_015589444.1\|1183752_1184628_-	succinate--CoA ligase subunit alpha	A0A2K9L1S3	Tupanvirus	1.8e-19	37.6
WP_015589445.1\|1184631_1185783_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_015589446.1\|1185820_1186021_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_015589447.1\|1186503_1187190_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_015589448.1\|1187358_1188603_-	hypothetical protein	NA	NA	NA	NA
WP_015589449.1\|1188651_1189476_-	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA
WP_015589450.1\|1189636_1192120_+	response regulator	B5LWN8	Feldmannia_species_virus	5.5e-05	32.9
WP_015589451.1\|1192210_1193053_+	ParA family protein	Q8JL10	Natrialba_phage	3.2e-18	25.8
WP_006279814.1\|1193049_1193901_+	ParB/RepB/Spo0J family partition protein	S5VSZ7	Leptospira_phage	1.7e-14	35.5
WP_174517030.1\|1194017_1194635_-\|transposase	transposase	NA	NA	NA	NA
WP_141456678.1\|1194636_1194966_-\|transposase	transposase	NA	NA	NA	NA
WP_015589452.1\|1195870_1196485_-	hypothetical protein	NA	NA	NA	NA
WP_015589453.1\|1198243_1198621_+	succinate dehydrogenase, cytochrome b556 subunit	NA	NA	NA	NA
WP_010963113.1\|1198617_1198974_+	succinate dehydrogenase, hydrophobic membrane anchor protein	NA	NA	NA	NA
WP_015589454.1\|1199058_1200297_+	hypothetical protein	NA	NA	NA	NA
WP_015589455.1\|1200409_1201699_+	cupin domain-containing protein	A0A1V0SH58	Hokovirus	2.1e-48	32.0
WP_012673387.1\|1201832_1203062_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_015589456.1\|1203054_1203786_+	hypothetical protein	NA	NA	NA	NA
WP_007548692.1\|1203782_1205003_+	hypothetical protein	NA	NA	NA	NA
WP_010081973.1\|1205201_1206074_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
WP_015589457.1\|1206092_1207427_+	TldD/PmbA family protein	NA	NA	NA	NA
WP_006279919.1\|1207601_1207853_+	cold-shock protein	NA	NA	NA	NA
WP_179943642.1\|1207906_1209115_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.0e-50	32.1
WP_015589459.1\|1209318_1211625_+	AAA family ATPase	A0A223W0B1	Agrobacterium_phage	6.6e-138	38.6
WP_041573616.1\|1211689_1212586_+	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_015589461.1\|1212793_1213870_+	quinone-dependent dihydroorotate dehydrogenase	A0A1V0SH91	Hokovirus	1.1e-13	26.3
WP_006279914.1\|1214057_1214756_+	ribonuclease III	A0A0P0YNE5	Yellowstone_lake_phycodnavirus	3.1e-30	36.5
WP_015589462.1\|1215746_1216277_-	phospholipase D family protein	E9P5Z4	Wolbachia_endosymbiont_wVitA_of_Nasonia_vitripennis_phage	5.5e-48	57.1
WP_015589463.1\|1217134_1217968_-	hypothetical protein	NA	NA	NA	NA
WP_015589464.1\|1218112_1218751_+	HAD-IA family hydrolase	NA	NA	NA	NA
WP_015589465.1\|1218750_1219236_+	RDD family protein	NA	NA	NA	NA
WP_007549093.1\|1219295_1219772_+	bacterioferritin	NA	NA	NA	NA
WP_015589466.1\|1219773_1220391_+	SURF1 family protein	NA	NA	NA	NA
WP_015589467.1\|1220421_1222140_-	cation:proton antiporter	NA	NA	NA	NA
WP_015589468.1\|1222145_1222718_-	thioredoxin family protein	NA	NA	NA	NA
WP_015589469.1\|1222826_1223417_+	dTMP kinase	M1PSC7	Streptococcus_phage	1.1e-28	42.6
WP_007548786.1\|1223409_1224078_-	hypothetical protein	NA	NA	NA	NA
WP_012673393.1\|1224232_1226071_-\|protease	ATP-dependent zinc metalloprotease FtsH	E5ESM9	Bathycoccus_sp._RCC1105_virus	3.5e-118	43.4

Anti-CRISPR protein detection

Acr_ID: NC_021089.1|WP_015589377.1|1081896_1082106_-|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_021089.1|WP_015589377.1|1081896_1082106_-|hypothetical-protein

1081896_1082106_-

69 aa aa

1049932-1086045

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_021089_10	Orphan	10.1\|850920\|56\|NC_021089\|CRISPRCasFinder	850920-850975	56	1064000-1064055	2

1. spacer 10.1|850920|56|NC_021089|CRISPRCasFinder matches to NC_021089 position: 1064000-1064055, mismatch: 2

ggttcgcggcggcgtgacgataagctcgtcatcccgctacttgttagcgggatcta	CRISPR spacer
ggttcgtggcggcgtgacgataagctcgtcatcccgctgcttgttagcgggatcta	Protospacer
******.*******************************.*****************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_021089

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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