CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010539	Mycoplasma pneumoniae 19294 chromosome, complete genome	4 crisprs	NA	5	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010539_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010539_1

47496-47728

Orphan

Consensus_repeat	Method
GGTTCTACAACTACTTCTGGTTGAA	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP010539_1

>merge|NZ_CP010539|1|47496-47728|CRISPRCasFinder
GATTCCACAACCACTTCTGGTTGAACTTGTTCCGTTGGAATTAATTCAGACACACCTGCCACAGCTGGTTCTACTGGAAGTGGCTCGGCAACAGCTTCCGGTTGATGTTCTACAACAGCTACTACAGGCTCTGTAACTACCTGAGGTGTAATCTCTGCAATAGTTTCAACAACTGGTGTTGGTTCAGTTTGTTGTGCTTCTGTAACTGGCTCTGCAGCTGCTTCTGGTTGAAC

>NZ_CP010539|1|1|47496-47728|CRISPRCasFinder
GATTCCACAACCACTTCTGGTTGAA	CTTGTTCCGTTGGAATTAATTCAGACACACCTGCCACAGCTGGTTCTACTGGAAGT
GGCTCGGCAACAGCTTCCGGTTGAT	GTTCTACAACAGCTACTACA
GGCTCTGTAACTACCTGAGGTGTAA	TCTCTGCAATAGTTTCAACAACTGGTGTTGGTTCAGTTTGTTGTGCTTCTGTAACT
GGCTCTGCAGCTGCTTCTGGTTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010539.1\|WP_010874816.1\|61512_63210_-\|cation-transporter	unknown	unknown	gnl\|CDD\|280534
NZ_CP010539.1\|WP_014325543.1\|48697_49555_-\|ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|275311
NZ_CP010539.1\|WP_026088314.1\|37821_38385_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010539.1\|WP_014574990.1\|57671_60689_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340089
NZ_CP010539.1\|WP_014325546.1\|54967_55792_-\|adhesin-P30	unknown	unknown	gnl\|CDD\|284643
NZ_CP010539.1\|WP_010874802.1\|44937_45555_-\|30S-ribosomal-protein-S4	unknown	unknown	gnl\|CDD\|200066
NZ_CP010539.1\|WP_014325539.1\|38802_40032_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NZ_CP010539.1\|WP_014325547.1\|55812_56394_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010539.1\|WP_010874811.1\|56482_57346_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010539.1\|WP_014325535.1\|35093_37274_-\|DUF3713-domain-containing-protein	unknown	unknown	gnl\|CDD\|289287
NZ_CP010539.1\|WP_026088315.1\|40038_44013_-\|DUF3713-domain-containing-protein	unknown	unknown	gnl\|CDD\|289287
NZ_CP010539.1\|WP_019830441.1\|52935_54954_-\|terminal-organelle-protein-HMW3	unknown	unknown	gnl\|CDD\|236766
NZ_CP010539.1\|WP_010874798.1\|38365_38818_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010539.1\|WP_161609244.1\|31142_33383_-\|DUF3713-domain-containing-protein	unknown	unknown	gnl\|CDD\|289287
NZ_CP010539.1\|WP_015344914.1\|50963_51863_-\|DNA-polymerase-III,-delta-subunit	unknown	unknown	gnl\|CDD\|224383
NZ_CP010539.1\|WP_010874805.1\|49605_50952_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010539.1\|WP_014574985.1\|44067_44877_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP010539.1\|WP_019830442.1\|51786_52896_-\|ComEC/Rec2-family-competence-protein	unknown	unknown	gnl\|CDD\|273035
NZ_CP010539.1\|WP_026088312.1\|34110_34938_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010539.1\|WP_161609240.1\|37280_37928_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP010539.1\|WP_014325543.1\|48697_49555_-\|ECF-transporter-S-component	gnl\|CDD\|275311	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family. Members of this model are the multiple membrane-spanning S (specificity) component of ECF (energy coupling factor) type uptake transporters. All seed members were found in the vicinity of the bifunctional enzyme folC, involved in making active cofactor from imported folate. However, some species have multiple members of this family, suggesting some diversity of function. [Transport and binding proteins, Unknown substrate].	6.07597e-08
NZ_CP010539.1\|WP_014574990.1\|57671_60689_-\|hypothetical-protein	gnl\|CDD\|340089	pfam17374, DUF5396, Family of unknown function (DUF5396). This is a family of unknown function found in Mycoplasma.	1.63806e-94
NZ_CP010539.1\|WP_014325546.1\|54967_55792_-\|adhesin-P30	gnl\|CDD\|284643	pfam07271, Cytadhesin_P30, Cytadhesin P30/P32. This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localized on the tip organelle. It is thought that it is important in cytadherence and virulence.	1.13217e-78
NZ_CP010539.1\|WP_010874802.1\|44937_45555_-\|30S-ribosomal-protein-S4	gnl\|CDD\|200066	TIGR01017, 30S_ribosomal_protein_S4, ribosomal protein S4, bacterial/organelle type. This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification].	7.36758e-99
NZ_CP010539.1\|WP_014325539.1\|38802_40032_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	1.11388e-79
NZ_CP010539.1\|WP_010874816.1\|61512_63210_-\|cation-transporter	gnl\|CDD\|280534	pfam02386, TrkH, Cation transport protein. This family consists of various cation transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J EC:3.6.1.34. These proteins are involved in active sodium up-take utilising ATP in the process. TrkH a member of the family from E. coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in E. coli.	1.59891e-146
NZ_CP010539.1\|WP_014325535.1\|35093_37274_-\|DUF3713-domain-containing-protein	gnl\|CDD\|289287	pfam12506, DUF3713, Protein of unknown function (DUF3713). This family of proteins is found in bacteria. Proteins in this family are typically between 92 and 1225 amino acids in length. There is a single completely conserved residue S that may be functionally important.	6.58148e-31
NZ_CP010539.1\|WP_026088315.1\|40038_44013_-\|DUF3713-domain-containing-protein	gnl\|CDD\|289287	pfam12506, DUF3713, Protein of unknown function (DUF3713). This family of proteins is found in bacteria. Proteins in this family are typically between 92 and 1225 amino acids in length. There is a single completely conserved residue S that may be functionally important.	6.02033e-27
NZ_CP010539.1\|WP_019830441.1\|52935_54954_-\|terminal-organelle-protein-HMW3	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	6.4034e-16
NZ_CP010539.1\|WP_161609244.1\|31142_33383_-\|DUF3713-domain-containing-protein	gnl\|CDD\|289287	pfam12506, DUF3713, Protein of unknown function (DUF3713). This family of proteins is found in bacteria. Proteins in this family are typically between 92 and 1225 amino acids in length. There is a single completely conserved residue S that may be functionally important.	1.08334e-30
NZ_CP010539.1\|WP_015344914.1\|50963_51863_-\|DNA-polymerase-III,-delta-subunit	gnl\|CDD\|224383	COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair].	1.58644e-49
NZ_CP010539.1\|WP_014574985.1\|44067_44877_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.11341e-21
NZ_CP010539.1\|WP_019830442.1\|51786_52896_-\|ComEC/Rec2-family-competence-protein	gnl\|CDD\|273035	TIGR00360, Uncharacterized_protein_MG316_homolog, ComEC/Rec2-related protein. The related model ComEC_Rec2 (TIGR00361) describes a set of proteins of ~ 700-800 residues, one each from a number of different species, of which most can become competent for natural transformation with exogenous DNA. The best-studied examples are ComEC from Bacillus subtilis and Rec-2 from Haemophilus influenzae, where the protein appears to form part of the DNA import structure. This model represents a region found in full-length ComEC/Rec2 and shorter homologs of unknown function from large number of additional bacterial species, most of which are not known to become competent for transformation (an exception is Helicobacter pylori). [Unknown function, General].	7.97108e-44

>NZ_CP010539.1|WP_010874802.1|44937_45555_-|30S-ribosomal-protein-S4
MKYTGSIFKRSRRLGFSLLENNKEFSKGKKRKTIPGQHGNRFRSSTMSGYAQQLQEKQRMQYMYGITDKQFRRLFRLVLKQRGNLAVNLFRVLESRLDNIVYRMGFAPTRRSARQLVNHGHVLLNDRTVDTPSIILNPGDKVRLKAKTIKIPIVKAASESGVVSPFVETNNKTFEGTYVRFPERSELPAGINESYVVEWYKRLVK
>NZ_CP010539.1|WP_014574985.1|44067_44877_+|alpha/beta-hydrolase
MRLEIENGLEFVCDPFLNERGKILFLHAFTGNITNKLSFRTHFKDYSFYGINFPGHGNSVIHNQSELDFNFWIKLVQQFFNKYQLKNVVLFGHSIGGGLAIALTQVLTKEQIKGIILEAPLNPGIRATPPSIISALVPDTNEDFEAVQRALIYNIEQRFGANFKDFCAKQKQKMIQKYAPLKVMLQPEQAEQRLQLIDAAFKRLSYPTLWIHGQEDGIVRYLPSKAYLESLHNPLIELVGLSNTAHTTFFEQPQQFLQLVEQFLNKLNK
>NZ_CP010539.1|WP_026088315.1|40038_44013_-|DUF3713-domain-containing-protein
MHTFTRKVKWPFMFTAIGLTFGIVAVACAQPTASTVEGLFKPSSAFADRTDFSLSSILQKSLINRESFNQYLAMRLAPVLRTFYDDNYDTDIKERLNGFTADTDNAFVSQEQNLRNQFRENYLVHLQTDIFDNTGGNQAAWKLRDVNNKIIDDFISRIFAKNFVEYVQDGVGPLTKPTKSLIENTSNFKNIKLQPKFVNKNAKLKINNDAVYAAIQDKLLDQFITNENPNLVSRVVFTNETPVDGFDNYFNTKVIQSPTPSYQFQVFNKYNQQSGGTKGANGFNLLASNLKSYKNDQSKGIDIPNKFSSDSGGKLLLKASDMFDTFDPSFSAAFIQGYLALQKKSKGADSKEVDSLIKDKSIIENFFVDNNTQAAAAARAASSSSEGTIQLKTASDGGGTTQSTVHKTDLVKIFGDKDVFAGEYKQQIGNTNANQTGGGGSGGGGGTSTGSSTGSSTETTTGNSSKAVVDLIEVKKDSSSQPDYILSRGKDGIHLMAVDGGSHYLTESGRDVAKQKEFLLFRALQTKYGLVDTDTTYDFKLFDEVKKYFDTNRILFLFEALLDLSSDTNNKDNFLSYPQFKKFADSIKSIEKDLKELVQAHYKQAVFNETAVAENKVTLKLAERNQPFIDNERNNQIEQNGLAAKLPYEQDAKTGHYNDLGNYYKDIIDNVDKKGTSTVKTTSSNTGQTKNFSEEVVSKLKDNKKKVEEAAKKHVEALKVFTIPSPLYSQVILVQTKLSFTPESTSLGLNLALNNYLTSTELQNSIKLSYFQEDEAFKKIIDITNLTFSQQSGGTGGTNGNNNLTADNWKIFKETYLLDLFESQAQKSIFGHVGSSDKNSSTKTGIEGVLDTLYSSLNLEERLDSDDVIDYLSYLYTAHWLLKDNLKNYKQSLQSKLSRTSNAFLVWSVDSEKNKNDSQSTLSSTASSTSNTGLIQLRSVVSLAQNQAAGQGGDNNSDITQTEVKNPNFVFGSSVYDWTNSKTPEVNRAADDTSSFFYTKSSSSTGAAQSSATVLRSLNQASGMTTKTAKNRYGFRGIVTSSTSGSLPEAVSRRLFKQFVNQTEKGVKVGGQMLITTAKSGKATLVLKQQADDAESTTNNAYKGALFSFGSMDNLKNIINGIQTQTEFDALYNHLTSDLNIDVTGVDKNKTLTEQKTSLTSFVDSNFKQSTQSAQRGDTSARSARSATVQIKKTQEDNQNTNYKDVFSRFDGYIGDNKVEEKNYTSYQFLSDGGKYHATFVKQVNLDDVEKIGTDSLKQEDSSKDKRLNLSLEEFLAAIALEALDPNNQTQAINALISGNKKGLVKVGDFRIFSSISAQWVRRF
>NZ_CP010539.1|WP_014325539.1|38802_40032_-|DEAD/DEAH-box-helicase
MHFIQPLQAFLQTKHIVEFSSIQQAVFKVWPRQNVVGIAETGSGKTFAYLLPALNQIDVTLNKPQAVVFVPTKELKWQILTILNDIKASFTGLKVSENFNSNAHLIVSLIGKDIILHETIKYVVFDEVDMFLEDSSQAEWINCVQLFQKHKPHFGFFSATLFNEQLQQIRKQVAPLTVVNQKKRAWKHSLVKHFLLNLNGQEPFAGLLALLNYHHNEQVLVFCSNAKSLKQLTSLLAHNQVSFKSLHGQLTPNERKHIFTSAANNTVRVLVVSDLLARGIDLPHFSVVISWDLPLVDSFYIHRSGRVARFNSWGNSYVFDLPHNQHKLTKFAHKGILFNSVHLERDGTLKFPQLKQSKQKPAVSSELKTAIKRIKAGYKKVKPNYKKRQKQQIAELFAKRKQRRSWKNF
>NZ_CP010539.1|WP_010874798.1|38365_38818_-|hypothetical-protein
MKKLLIKPQFWFLTLGGFISSSVILVACATPSNSALQTVFKARSNQFFNGEQGSLQNALATALKDPEANKQFVAAPLLKALTAWYENNQDKQVTQFFKDTKKSVDEQYNQAVDKVVSASRNKNLFVQQDLLDSAGGVRNLKSPEVVWTAH
>NZ_CP010539.1|WP_026088314.1|37821_38385_-|hypothetical-protein
MFEQLISDFASRVFQKNYLAYKDGNKVSSGPFLFDEISKSSNWDKIVFDAGQFPEINDAFFAQIQSEVFDQWAEYTDPTVISFTTLKYSAPNQGLGQIYNQDKLKDKLTPSYAFPFFAAADEIAGSQNVGNKRWKQLVKGEEAIEEKPKQQQDGSQTKGVQKRRPYQVCTGNRQRPSNWLSVKLIRY
>NZ_CP010539.1|WP_161609240.1|37280_37928_-|hypothetical-protein
MAVKQKEFKKEGLTKYVRGTDRGQVIDFPLSLSDTNETKKVVDATNIVDQLEAADLAAVLNIKLDRLGQEKDELLEFKELKDDLNNVIVIDKSSDAQNVSKTNSSFYEDNQNSGTTNTDPIAQALDDIFATNVEQKTNLGKLAEQIKKTAEIKTQTPQARGTVVLRNKSQTQQKNSYVLLDAGIPTFKQQVSTQGQGSVSLHNGTLISLNTSTVA
>NZ_CP010539.1|WP_014325535.1|35093_37274_-|DUF3713-domain-containing-protein
MQQQGETKDQYNTFGLRLVRNSVGVSVLGLDGFVKFIKGGSGGSNGGSSSAKKIDKEEQKKFLKFRAFQAKIGTFYNTNFAFSFPLNETLKGWFDKHRGLILANALVKVTLDTKEKASKALVDAFSSYKNWLSEYTPIGLATTMISFYFDQMKALNNKLLERVRSLNQNVNQANPTPWLNGLSAKLPYVNTNGNYEKLNNYFTFLITKVLWPKVGTEDTNVSEEKSKLKTKTEDVNKIREKILNNIDSKLKTFVQKLKPTLAPRPAYSNVILLNINNDKVWSAGANWSLAVLLDPKKVNPLSFMLLKQMFDQNSLFKKAKTLFENIQNKAKTSGSGKSGTTTNDDADALSKVIGNYYYNTWAKLTDKSIYGNPKDDKFDDLFKLAFDSSINEKSFNVDYKAVIEHYRFIYTLEWLVDKNLKNFKDLLKANLKFGEIAFIAYKNTETQNFSNPQGIFGSYFNYENETNAAKSATQIIDPNSFFYKTTTKPEAKTTQSANTAVMVQNTQMNNQQTNSYGFTGLSTSSGSMLGAATQQAILDQITKTSLQQYGSQADLKKIIGETKNQLLLDRIANQLIALKPNTSGNSGTQKTIAAYFQTDAVGNPTLDFKAKQKLLLDVLDQYKDFFGNNAQAVQRDSGKSGTGNYLTYTDGSDKITYLQFSYKDIDGLSLSSSNGTSSKFASDVVAALLLFQAADKGTQQLALSSINKPQLPIGDKRIKTGIDLLK
>NZ_CP010539.1|WP_026088312.1|34110_34938_-|hypothetical-protein
MKSFLRKPKFWLLLLGGLSTSSIILSACATPSNSALQAVFKPTSNQFFNGEHGTIQSALNTALRDPETNKKFVAAPLLKALEAWYENNQDKNITQFLKDTKTNVDNQYKTVVDKVVSAPRNKSLFVQQDLLDSSGGSEATWKARKLFEQLISDFASRVFQKNYLSYKENGKVSAGPFLYDTISKNSNWQNIVFDAGNFPETNDDFFAQIQSEVFDQWAEYTDPTIISSVTLKYSAPNQGLGQIYNKDKLKDKLTPSYAFPFFCWGKRYSGKSKRW
>NZ_CP010539.1|WP_161609244.1|31142_33383_-|DUF3713-domain-containing-protein
MTQQKSSTTPLNQRIVRNSTGVKLLALEGLLYYVVGSSNKQQSSSSTIATSLAQNQSNNNQEQEINSSLQKNLLKFRAFQAKNRVFKQGGTKYAFSFPLNETLKGWFDKHRELILANALVKANFDQKDKANKALTEALKPYKDLLAEYAPIGLATTMINFLFNQMNAFNKFLERAKALNQNVNQANPTPWLNGLSAKLPYVRTNGNYEKLNNYFTFLIVKYMWKKVGNEDASLSKDSSTNKLKTKTEDVNKIRDKILEDIQKKVQEFVKNKLKPTLAPRQTYSNVILLNVNNDKVWSMGANWALANLLDTSKINPLSFMLLKQTFDQNDLFKKAKKLFEDIQSKTNGGSSGGMQGSNTSSSEGADALSKVIGNYYYNSWAKLTDKSIYGNPKDNKFDDLFKLAFEDSINEKSFNVDYKAVIEHYRFIYTLEWLVNGNLKNFKDLLKANLKFGEIAFIAYKNTETKEFSNPQGVFGSAFNYENETNEVKIAAQNLDPNNFFYKTTTKPEEVKTAQNGASMMVMQQKMQSTMQDSNHYGFTGLNTSTSSMLGAATQQAILDQITKNSLQQYGSQQELKTLIEKTNNQLLLDRIASQLSGLNPSTTGNSNNGKGKNIATYFQLDAIGNPTLSFQQKRKLLLDVLDQYKDFFGTNTQAAQRDSGKGGHGSYSTYQDGSDKITYLQFSYKDIDNLSLSDKGNSKLASDVVAALLLFQAADKGTQQLALSAINKPQLPIGDKRIKTGIDLLK
>NZ_CP010539.1|WP_014325543.1|48697_49555_-|ECF-transporter-S-component
MFPYYPLKVTRNLQLLVWAAVLMALSFIFNIFSINVTSVLKVSFTRIPFALIGWMFGPVWGFTFGAIADTMDWLTRGYTWFWLFAIQKPMFCFLAGLVKGVYQVRQSSTNWKIDFWILQSILIGFFVLTLVLLLMYLTDGNFQAAGNQSFGRGFDVNVHILQGITMAAFISFFVGLEIFLGWKYTKVKKPKEMILNLYILMMALLMTLVVSLLIGTIASIEYLVFLSGKPSKNFVKYGSYFFLMPRVLVQALLMPLYLALFKPLIRIAENNLRNYLRVYNLSWKR
>NZ_CP010539.1|WP_010874805.1|49605_50952_-|hypothetical-protein
MTFSDLLTKLQDNLDIVFNANALKERIQSDPAFAKTIREQLKLLYFLEQKQAKAKTKKKDFQPVFQNLEARFVSLGQTKLANTELNLKLDLTDATDLANYLPIAVCNLFNRDLNSFSKLSSVQPTAVEKTTNGANKPTVTIDLNQPRIHTTGTVSPELENFVNESLEARARQRAFMRVTSERMVGKIFEFQFKSQWIKWAQLAIFISMLLIGAAAIAYLVVVNLLFYRYVNPDSNLTKAVTGQNNTDRPALVDLNGGINLFFPVSASTLITLIFLGFGSTSFLLAFQGKPYSFATRSQTFKAMHFLKHQFGVTDFPRINDNYRYKVRIKWIFWTIFLFVALNALPGGNIITGGILNPSFLLNALRSNELKINSETFKTIFVGFSIFYLASIIPFALISIIAFVLSPKPSSDQTNEVLNRYVQEEMQQPFKTDCDPNNDNDLTPPAVFG
>NZ_CP010539.1|WP_015344914.1|50963_51863_-|DNA-polymerase-III,-delta-subunit
MTVVYGADIGLIHQQLNQLLNPAACKQVWFQDVNKLYDVVLNQNLFAEDTKPILIHNCSFLEKNNLTKAELHCLKTLKDTDVVVTIYSDSPANALINDRAITKYACKPVTAKTIHQVISKAAKTLKLNLNPDLIDHLATILPFNLGVIEQELRKLTLLSPAELQDKKMLEAVLCDYQTSQILQLTDAMVRLQTAKALKLIERLFLPKQLTPPQFLEFLANELLLALMVKGVKPQAVFQLQWNVNPFRLKAIQSQYRFWSTNQLTALINAIWQLDIKIKRNDGLAIHLLKHFVLRFFAQK
>NZ_CP010539.1|WP_019830442.1|51786_52896_-|ComEC/Rec2-family-competence-protein
MKWKLFYFFTLLTFTPAYFFIEQNQWVVLASFLVIVNLISLTVHWKFGLLLISCSAALLAYCQLMPEFQLAKLMKANWLRTPFISWLDQHTSGVFNQYLKLFLINETTKNTLYQSAIQLNIVHLFVISGFHLSFLFGVMERWLYKRFYINKITGFVMLLLYLFLVGFAFSALRVFVSKLLRQMFPKQLPENNLGLTALLIILMSPGALHNFGFNFSFLACFVLFAINKVKLWKPLQAVLTSTLILIVVSPITLHLNRKLNALSVFHNLLFTPIALFYFCASWLLLPLIPWMGNSLVGFYWPLPWLSQWALNTTVFLNLPKPNWVFYLVYYGLWGLLYTVGTVFYYDRSLWRRYWVNSPAVKPTAQPSRL
>NZ_CP010539.1|WP_019830441.1|52935_54954_-|terminal-organelle-protein-HMW3
MTDKERAKLAKAYGKLAQKIQKSYPDINVVYGRDAKNKLHALYQDPETGNIFSLEKRKQLPADYPLFELDSDEPISFAPKIIPLTAFDGNNNEVIVQYDQVNNTFYDQDGNVLDVSGYRDGENIPLVDYLNYGGSTASADTTTSEPLSGEGYPDIDAGLPVVDPDATPEQQADQLFGLDPLPQAPDEYQDTTAPPVYDQTFDQATYDQQAYDQNYDPNAYYDQQAYDQSFDQQAYDQAYDANAYNTQNYDQAHDPNAYYDSQAYSDPDQASAVAPIEVAPLQPEPVAPVVEPTAVPIVESAPIVEVTPTVEPTPTPVVETAPVVEAPKVVKPTPTPVVEATPAPKVEPKVVEQPQPTPVTVEVDSPKVEIPKVVTAKVALQVAQPTPVPAVPKVAPQPTPAPVVVQPTAVVQPVVKAEPKVVTPTPAPQVVVTPQVATPKVTPKVVQTTPAVPPVVVQPEVVVQPIIRPTQPEPEWKPSPASVVEPQPCQSTCVNNESGAITIHTTNRSLLLEKLASLGHLHDASTRTPLPHERYQLAPPSEYVATKYNEPLFNLPAIRNSWARFTRPTVESTPIASRFTGVTPMAVNYRNPASLNFDSLNSFGAYRSPSSFYPLRRPLELSSLRRNRSSFFNTHRFDLGSNYTSFTPRYRSPLRGGLSQRFPLRSSWSKEF
>NZ_CP010539.1|WP_014325546.1|54967_55792_-|adhesin-P30
MKLPPRRKLKLFLLAWMLVLFSALIVLATLILVQHNNTELTEVKSELSPLNVVLHAEEDTVQIQGKPITEQAWFIPTVAGCFGFSALAIILGLAIGLPIVKRKEKRLLEEKERQEQLAEQLQRISAQQEEQQALEQQAAAEAHAEAEVEPAPQPVPVPPQPQVQINFGPRTGFPPQPGMAPRPGMPPHPGMAPRSGFPPQPGMAPRPGMPPHPGMAPRPGFPPQPGMAPRPGMPPHPGMAPRPGFPPQPGMAPRPGMQPPRPGMPPQPGFPPKR
>NZ_CP010539.1|WP_014325547.1|55812_56394_-|hypothetical-protein
MGFFKLLFKLAFLAVLTVAIAYLFLAIFYFGTVSPSFKLAQPMDVFNRFFSKEALDTVTTSGVGATVTAPKAAAASQSHALILAAEQVANNANKLDPRFPIDGSLFSQIPGYVDFLKKPNIPAFLEKVGPYLTKYIIPLGMALVSGLIGALIINFILSKITRAIIKKRRKAKRAQQSRDDDYYYDEAPRRRRR
>NZ_CP010539.1|WP_010874811.1|56482_57346_-|hypothetical-protein
MINQANNQVNFSEQQFVHHKRFSVIRLTFSVAAIGILFIFLIGFGVQQLLTNTTSLGTLASDIRTLGTIAFVASLVSLILYFVTAFKLRNRNTTLAWFWGLIIADVISYGITLGVLLTLATTQLRELIDFKFSDIVFAFLGAALVYGTVWGLSALPSQQRRYQQTQTLFRIFIWAFFISIIASLLTFVLNFTVFRGGRTNILDLLFPGLSLIVGGIFSLLSVYFVCLQIRNEQDLVKLYESQDPALAKAQMWRSALFFGAWLVSSFMNLVYFILRIILLTRNLSRAF
>NZ_CP010539.1|WP_014574990.1|57671_60689_-|hypothetical-protein
MKFQRKYWGLLSTLGVSSAVALSACAAQARDVYVTSSASDLLKNNSVPMSMFNVSPTSSFFGSKYAGLTTYIATGSNKDDGVNVTTQTQEKLVLELATSVKGYKKKDKATSSQKTSTNSSCTTTSSGTSTSGEDDWECIGEIKRQSSSNGQNNQQSKSITEEEKFQEISQKATRYEFAIDTGIKWVDNNGKPVKDASGNDVKLSSKDFERGFEAYILSSELRFNRNGYFIDLMGLDVKKTVGMTKKNGTQVQMKVASSDEKDGEEKTVKITDDAYNPEDYQSTDDSKFNVYLTSPFPFLLSMMSKEFFFPIPHTHPKVKAIKVGKDSPLVYNEKNGSKILDQTKTNFDGIYGGGVNAWRDTWSVGPYYVESFNQSQIVFKRNSEYDTHITPNLPKTREENEKPIPTMINYFQPGATPEVFYSNYIAGGLSSAEVPYSQQEDARSRFAGTGDLRWVKVQKTAQSAQITYSSRPYVVEGETVKTNSNITETEAKFLYNSESEEALTIRAGINGLINWQNLAIILLPNSGDLNYSIVPFGIFKEKGKNGASVQQKAVSTTEGSDLMNDYYYKIEKEQRLGLIPQREGNYEKNKNVLESATVKINYYSSKATSGQAGAAASAAFAKNNNTSDNTQQNQTSSVEAKSVNVTKHSFVQVLKKVGFSGSNPLHFNMKLGNSSLSANGVDYYNAVKQALTELGTADNGEKLIVPEIILGDAQGPTRNEWYIGLSSVLGFSSWSPDYDGVGTWLDAATQLNDQGGGDVITYSSGAHIVRTLLLAASQKDVHSKFTQKIDQQNTASTTSDVTVKKADSSQDSSKSNTEEEKWDDVTSADLFKDDPYVLKNFGDAKAQAAQRSTGSTTSGNGTQASLEFTKKALSLLKFLVDNGILDKEKVKEAIKDPNKYLGKRDKIENGTNKPSKNEDFIGYELKDIYKNAAQLNRFNSIWAEKDTDNAKFLITVVDSYFPVLPVPAAGLNETSPTLLKPWFQFRSAPSGNGTIRDYGFIPENK
>NZ_CP010539.1|WP_010874816.1|61512_63210_-|cation-transporter
MTAAHKQKAKLLAWLKLILWGDSISQRIFHFYIYCILLGAVLLFLPFALKTDYQKVISYEVDLQGHTISKQTASYGFLDALFLAVSAFSDTGLSTTVVSETYSVFGQTVLAILLQLGGIGFVVIAFLVWRLFKLHKKGKYSFYEKLMLQSERGGSKLGTTSEMIVVSVLFLFMVELLYGFLYTILFYFIPAFESASVFQSSGKVSNQLKALIVDSTKRLPVVHNLNLAFQYGFFHSLSAVNNAGIDLLGANSFAPYRTNWGIVIQWLAISQIIFGGIGYPVLFDAYEAIKKRRLYGKYYKHQFSLFTKLAVLTNLIVTAWCFLMLLMVEFIVITSLTNTIAHLNVEKAYLVEGLKNKSNQELQSLIFGPIPAASRVMQLWFGVISSRSAGFSVFPWSAESDIIKGIMVIAMFIGGSPSSTAGGIRTTTLAVIFLTLKAKFRGQKEVKVFKRSIDGQTVINAFLVAVFGLVSVVLIAILLPLSMQQPLSFVDSLFETTSAFGTVGLSSGATKIMALEPTRNLFNYLTLGLLMIMGQVGVSSSVLTFVKKHPQGNSFSYPREDVKVG

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Crispr_ID: NZ_CP010539_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010539_2

47958-48123

Orphan

Consensus_repeat	Method
GGTTCTACAACTACTTCTGGTTGAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP010539_2

>merge|NZ_CP010539|2|47958-48123|CRISPRCasFinder
GGTTCTACAACTACTTCTGGTTGAATTTCTACTGCTTGTGGTTCTACTGTTGCAGTAGTTTCTCCCACCGGTTCTACAGCTACTTCTGGTTGAACATCGTAAACAGGCTCAGCAGCTACCTCTGGTTGTACCTCATAGCTAGGTTCAGCAACTTCTGGTGCTGGTA

>NZ_CP010539|2|2|47958-48123|CRISPRCasFinder
GGTTCTACAACTACTTCTGGTTGAA	TTTCTACTGCTTGTGGTTCTACTGTTGCAGTAGTTTCTCCCACC
GGTTCTACAGCTACTTCTGGTTGAA	CATCGTAAACAGGCTCAGCAGCTACCTCTGGTTGTACCTCATAGCTA
GGTTCAGCAACTTCTGGTGCTGGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010539.1\|WP_010874816.1\|61512_63210_-\|cation-transporter	unknown	unknown	gnl\|CDD\|280534
NZ_CP010539.1\|WP_014325543.1\|48697_49555_-\|ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|275311
NZ_CP010539.1\|WP_026088314.1\|37821_38385_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010539.1\|WP_014574990.1\|57671_60689_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340089
NZ_CP010539.1\|WP_014325546.1\|54967_55792_-\|adhesin-P30	unknown	unknown	gnl\|CDD\|284643
NZ_CP010539.1\|WP_010874802.1\|44937_45555_-\|30S-ribosomal-protein-S4	unknown	unknown	gnl\|CDD\|200066
NZ_CP010539.1\|WP_014325539.1\|38802_40032_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NZ_CP010539.1\|WP_014325547.1\|55812_56394_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010539.1\|WP_010874811.1\|56482_57346_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010539.1\|WP_014325535.1\|35093_37274_-\|DUF3713-domain-containing-protein	unknown	unknown	gnl\|CDD\|289287
NZ_CP010539.1\|WP_026088315.1\|40038_44013_-\|DUF3713-domain-containing-protein	unknown	unknown	gnl\|CDD\|289287
NZ_CP010539.1\|WP_019830441.1\|52935_54954_-\|terminal-organelle-protein-HMW3	unknown	unknown	gnl\|CDD\|236766
NZ_CP010539.1\|WP_010874798.1\|38365_38818_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010539.1\|WP_161609244.1\|31142_33383_-\|DUF3713-domain-containing-protein	unknown	unknown	gnl\|CDD\|289287
NZ_CP010539.1\|WP_015344914.1\|50963_51863_-\|DNA-polymerase-III,-delta-subunit	unknown	unknown	gnl\|CDD\|224383
NZ_CP010539.1\|WP_010874805.1\|49605_50952_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010539.1\|WP_014574985.1\|44067_44877_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP010539.1\|WP_019830442.1\|51786_52896_-\|ComEC/Rec2-family-competence-protein	unknown	unknown	gnl\|CDD\|273035
NZ_CP010539.1\|WP_026088312.1\|34110_34938_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010539.1\|WP_161609240.1\|37280_37928_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP010539.1\|WP_014325543.1\|48697_49555_-\|ECF-transporter-S-component	gnl\|CDD\|275311	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family. Members of this model are the multiple membrane-spanning S (specificity) component of ECF (energy coupling factor) type uptake transporters. All seed members were found in the vicinity of the bifunctional enzyme folC, involved in making active cofactor from imported folate. However, some species have multiple members of this family, suggesting some diversity of function. [Transport and binding proteins, Unknown substrate].	6.07597e-08
NZ_CP010539.1\|WP_014574990.1\|57671_60689_-\|hypothetical-protein	gnl\|CDD\|340089	pfam17374, DUF5396, Family of unknown function (DUF5396). This is a family of unknown function found in Mycoplasma.	1.63806e-94
NZ_CP010539.1\|WP_014325546.1\|54967_55792_-\|adhesin-P30	gnl\|CDD\|284643	pfam07271, Cytadhesin_P30, Cytadhesin P30/P32. This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localized on the tip organelle. It is thought that it is important in cytadherence and virulence.	1.13217e-78
NZ_CP010539.1\|WP_010874802.1\|44937_45555_-\|30S-ribosomal-protein-S4	gnl\|CDD\|200066	TIGR01017, 30S_ribosomal_protein_S4, ribosomal protein S4, bacterial/organelle type. This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification].	7.36758e-99
NZ_CP010539.1\|WP_014325539.1\|38802_40032_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	1.11388e-79
NZ_CP010539.1\|WP_010874816.1\|61512_63210_-\|cation-transporter	gnl\|CDD\|280534	pfam02386, TrkH, Cation transport protein. This family consists of various cation transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J EC:3.6.1.34. These proteins are involved in active sodium up-take utilising ATP in the process. TrkH a member of the family from E. coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in E. coli.	1.59891e-146
NZ_CP010539.1\|WP_014325535.1\|35093_37274_-\|DUF3713-domain-containing-protein	gnl\|CDD\|289287	pfam12506, DUF3713, Protein of unknown function (DUF3713). This family of proteins is found in bacteria. Proteins in this family are typically between 92 and 1225 amino acids in length. There is a single completely conserved residue S that may be functionally important.	6.58148e-31
NZ_CP010539.1\|WP_026088315.1\|40038_44013_-\|DUF3713-domain-containing-protein	gnl\|CDD\|289287	pfam12506, DUF3713, Protein of unknown function (DUF3713). This family of proteins is found in bacteria. Proteins in this family are typically between 92 and 1225 amino acids in length. There is a single completely conserved residue S that may be functionally important.	6.02033e-27
NZ_CP010539.1\|WP_019830441.1\|52935_54954_-\|terminal-organelle-protein-HMW3	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	6.4034e-16
NZ_CP010539.1\|WP_161609244.1\|31142_33383_-\|DUF3713-domain-containing-protein	gnl\|CDD\|289287	pfam12506, DUF3713, Protein of unknown function (DUF3713). This family of proteins is found in bacteria. Proteins in this family are typically between 92 and 1225 amino acids in length. There is a single completely conserved residue S that may be functionally important.	1.08334e-30
NZ_CP010539.1\|WP_015344914.1\|50963_51863_-\|DNA-polymerase-III,-delta-subunit	gnl\|CDD\|224383	COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair].	1.58644e-49
NZ_CP010539.1\|WP_014574985.1\|44067_44877_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.11341e-21
NZ_CP010539.1\|WP_019830442.1\|51786_52896_-\|ComEC/Rec2-family-competence-protein	gnl\|CDD\|273035	TIGR00360, Uncharacterized_protein_MG316_homolog, ComEC/Rec2-related protein. The related model ComEC_Rec2 (TIGR00361) describes a set of proteins of ~ 700-800 residues, one each from a number of different species, of which most can become competent for natural transformation with exogenous DNA. The best-studied examples are ComEC from Bacillus subtilis and Rec-2 from Haemophilus influenzae, where the protein appears to form part of the DNA import structure. This model represents a region found in full-length ComEC/Rec2 and shorter homologs of unknown function from large number of additional bacterial species, most of which are not known to become competent for transformation (an exception is Helicobacter pylori). [Unknown function, General].	7.97108e-44

>NZ_CP010539.1|WP_010874802.1|44937_45555_-|30S-ribosomal-protein-S4
MKYTGSIFKRSRRLGFSLLENNKEFSKGKKRKTIPGQHGNRFRSSTMSGYAQQLQEKQRMQYMYGITDKQFRRLFRLVLKQRGNLAVNLFRVLESRLDNIVYRMGFAPTRRSARQLVNHGHVLLNDRTVDTPSIILNPGDKVRLKAKTIKIPIVKAASESGVVSPFVETNNKTFEGTYVRFPERSELPAGINESYVVEWYKRLVK
>NZ_CP010539.1|WP_014574985.1|44067_44877_+|alpha/beta-hydrolase
MRLEIENGLEFVCDPFLNERGKILFLHAFTGNITNKLSFRTHFKDYSFYGINFPGHGNSVIHNQSELDFNFWIKLVQQFFNKYQLKNVVLFGHSIGGGLAIALTQVLTKEQIKGIILEAPLNPGIRATPPSIISALVPDTNEDFEAVQRALIYNIEQRFGANFKDFCAKQKQKMIQKYAPLKVMLQPEQAEQRLQLIDAAFKRLSYPTLWIHGQEDGIVRYLPSKAYLESLHNPLIELVGLSNTAHTTFFEQPQQFLQLVEQFLNKLNK
>NZ_CP010539.1|WP_026088315.1|40038_44013_-|DUF3713-domain-containing-protein
MHTFTRKVKWPFMFTAIGLTFGIVAVACAQPTASTVEGLFKPSSAFADRTDFSLSSILQKSLINRESFNQYLAMRLAPVLRTFYDDNYDTDIKERLNGFTADTDNAFVSQEQNLRNQFRENYLVHLQTDIFDNTGGNQAAWKLRDVNNKIIDDFISRIFAKNFVEYVQDGVGPLTKPTKSLIENTSNFKNIKLQPKFVNKNAKLKINNDAVYAAIQDKLLDQFITNENPNLVSRVVFTNETPVDGFDNYFNTKVIQSPTPSYQFQVFNKYNQQSGGTKGANGFNLLASNLKSYKNDQSKGIDIPNKFSSDSGGKLLLKASDMFDTFDPSFSAAFIQGYLALQKKSKGADSKEVDSLIKDKSIIENFFVDNNTQAAAAARAASSSSEGTIQLKTASDGGGTTQSTVHKTDLVKIFGDKDVFAGEYKQQIGNTNANQTGGGGSGGGGGTSTGSSTGSSTETTTGNSSKAVVDLIEVKKDSSSQPDYILSRGKDGIHLMAVDGGSHYLTESGRDVAKQKEFLLFRALQTKYGLVDTDTTYDFKLFDEVKKYFDTNRILFLFEALLDLSSDTNNKDNFLSYPQFKKFADSIKSIEKDLKELVQAHYKQAVFNETAVAENKVTLKLAERNQPFIDNERNNQIEQNGLAAKLPYEQDAKTGHYNDLGNYYKDIIDNVDKKGTSTVKTTSSNTGQTKNFSEEVVSKLKDNKKKVEEAAKKHVEALKVFTIPSPLYSQVILVQTKLSFTPESTSLGLNLALNNYLTSTELQNSIKLSYFQEDEAFKKIIDITNLTFSQQSGGTGGTNGNNNLTADNWKIFKETYLLDLFESQAQKSIFGHVGSSDKNSSTKTGIEGVLDTLYSSLNLEERLDSDDVIDYLSYLYTAHWLLKDNLKNYKQSLQSKLSRTSNAFLVWSVDSEKNKNDSQSTLSSTASSTSNTGLIQLRSVVSLAQNQAAGQGGDNNSDITQTEVKNPNFVFGSSVYDWTNSKTPEVNRAADDTSSFFYTKSSSSTGAAQSSATVLRSLNQASGMTTKTAKNRYGFRGIVTSSTSGSLPEAVSRRLFKQFVNQTEKGVKVGGQMLITTAKSGKATLVLKQQADDAESTTNNAYKGALFSFGSMDNLKNIINGIQTQTEFDALYNHLTSDLNIDVTGVDKNKTLTEQKTSLTSFVDSNFKQSTQSAQRGDTSARSARSATVQIKKTQEDNQNTNYKDVFSRFDGYIGDNKVEEKNYTSYQFLSDGGKYHATFVKQVNLDDVEKIGTDSLKQEDSSKDKRLNLSLEEFLAAIALEALDPNNQTQAINALISGNKKGLVKVGDFRIFSSISAQWVRRF
>NZ_CP010539.1|WP_014325539.1|38802_40032_-|DEAD/DEAH-box-helicase
MHFIQPLQAFLQTKHIVEFSSIQQAVFKVWPRQNVVGIAETGSGKTFAYLLPALNQIDVTLNKPQAVVFVPTKELKWQILTILNDIKASFTGLKVSENFNSNAHLIVSLIGKDIILHETIKYVVFDEVDMFLEDSSQAEWINCVQLFQKHKPHFGFFSATLFNEQLQQIRKQVAPLTVVNQKKRAWKHSLVKHFLLNLNGQEPFAGLLALLNYHHNEQVLVFCSNAKSLKQLTSLLAHNQVSFKSLHGQLTPNERKHIFTSAANNTVRVLVVSDLLARGIDLPHFSVVISWDLPLVDSFYIHRSGRVARFNSWGNSYVFDLPHNQHKLTKFAHKGILFNSVHLERDGTLKFPQLKQSKQKPAVSSELKTAIKRIKAGYKKVKPNYKKRQKQQIAELFAKRKQRRSWKNF
>NZ_CP010539.1|WP_010874798.1|38365_38818_-|hypothetical-protein
MKKLLIKPQFWFLTLGGFISSSVILVACATPSNSALQTVFKARSNQFFNGEQGSLQNALATALKDPEANKQFVAAPLLKALTAWYENNQDKQVTQFFKDTKKSVDEQYNQAVDKVVSASRNKNLFVQQDLLDSAGGVRNLKSPEVVWTAH
>NZ_CP010539.1|WP_026088314.1|37821_38385_-|hypothetical-protein
MFEQLISDFASRVFQKNYLAYKDGNKVSSGPFLFDEISKSSNWDKIVFDAGQFPEINDAFFAQIQSEVFDQWAEYTDPTVISFTTLKYSAPNQGLGQIYNQDKLKDKLTPSYAFPFFAAADEIAGSQNVGNKRWKQLVKGEEAIEEKPKQQQDGSQTKGVQKRRPYQVCTGNRQRPSNWLSVKLIRY
>NZ_CP010539.1|WP_161609240.1|37280_37928_-|hypothetical-protein
MAVKQKEFKKEGLTKYVRGTDRGQVIDFPLSLSDTNETKKVVDATNIVDQLEAADLAAVLNIKLDRLGQEKDELLEFKELKDDLNNVIVIDKSSDAQNVSKTNSSFYEDNQNSGTTNTDPIAQALDDIFATNVEQKTNLGKLAEQIKKTAEIKTQTPQARGTVVLRNKSQTQQKNSYVLLDAGIPTFKQQVSTQGQGSVSLHNGTLISLNTSTVA
>NZ_CP010539.1|WP_014325535.1|35093_37274_-|DUF3713-domain-containing-protein
MQQQGETKDQYNTFGLRLVRNSVGVSVLGLDGFVKFIKGGSGGSNGGSSSAKKIDKEEQKKFLKFRAFQAKIGTFYNTNFAFSFPLNETLKGWFDKHRGLILANALVKVTLDTKEKASKALVDAFSSYKNWLSEYTPIGLATTMISFYFDQMKALNNKLLERVRSLNQNVNQANPTPWLNGLSAKLPYVNTNGNYEKLNNYFTFLITKVLWPKVGTEDTNVSEEKSKLKTKTEDVNKIREKILNNIDSKLKTFVQKLKPTLAPRPAYSNVILLNINNDKVWSAGANWSLAVLLDPKKVNPLSFMLLKQMFDQNSLFKKAKTLFENIQNKAKTSGSGKSGTTTNDDADALSKVIGNYYYNTWAKLTDKSIYGNPKDDKFDDLFKLAFDSSINEKSFNVDYKAVIEHYRFIYTLEWLVDKNLKNFKDLLKANLKFGEIAFIAYKNTETQNFSNPQGIFGSYFNYENETNAAKSATQIIDPNSFFYKTTTKPEAKTTQSANTAVMVQNTQMNNQQTNSYGFTGLSTSSGSMLGAATQQAILDQITKTSLQQYGSQADLKKIIGETKNQLLLDRIANQLIALKPNTSGNSGTQKTIAAYFQTDAVGNPTLDFKAKQKLLLDVLDQYKDFFGNNAQAVQRDSGKSGTGNYLTYTDGSDKITYLQFSYKDIDGLSLSSSNGTSSKFASDVVAALLLFQAADKGTQQLALSSINKPQLPIGDKRIKTGIDLLK
>NZ_CP010539.1|WP_026088312.1|34110_34938_-|hypothetical-protein
MKSFLRKPKFWLLLLGGLSTSSIILSACATPSNSALQAVFKPTSNQFFNGEHGTIQSALNTALRDPETNKKFVAAPLLKALEAWYENNQDKNITQFLKDTKTNVDNQYKTVVDKVVSAPRNKSLFVQQDLLDSSGGSEATWKARKLFEQLISDFASRVFQKNYLSYKENGKVSAGPFLYDTISKNSNWQNIVFDAGNFPETNDDFFAQIQSEVFDQWAEYTDPTIISSVTLKYSAPNQGLGQIYNKDKLKDKLTPSYAFPFFCWGKRYSGKSKRW
>NZ_CP010539.1|WP_161609244.1|31142_33383_-|DUF3713-domain-containing-protein
MTQQKSSTTPLNQRIVRNSTGVKLLALEGLLYYVVGSSNKQQSSSSTIATSLAQNQSNNNQEQEINSSLQKNLLKFRAFQAKNRVFKQGGTKYAFSFPLNETLKGWFDKHRELILANALVKANFDQKDKANKALTEALKPYKDLLAEYAPIGLATTMINFLFNQMNAFNKFLERAKALNQNVNQANPTPWLNGLSAKLPYVRTNGNYEKLNNYFTFLIVKYMWKKVGNEDASLSKDSSTNKLKTKTEDVNKIRDKILEDIQKKVQEFVKNKLKPTLAPRQTYSNVILLNVNNDKVWSMGANWALANLLDTSKINPLSFMLLKQTFDQNDLFKKAKKLFEDIQSKTNGGSSGGMQGSNTSSSEGADALSKVIGNYYYNSWAKLTDKSIYGNPKDNKFDDLFKLAFEDSINEKSFNVDYKAVIEHYRFIYTLEWLVNGNLKNFKDLLKANLKFGEIAFIAYKNTETKEFSNPQGVFGSAFNYENETNEVKIAAQNLDPNNFFYKTTTKPEEVKTAQNGASMMVMQQKMQSTMQDSNHYGFTGLNTSTSSMLGAATQQAILDQITKNSLQQYGSQQELKTLIEKTNNQLLLDRIASQLSGLNPSTTGNSNNGKGKNIATYFQLDAIGNPTLSFQQKRKLLLDVLDQYKDFFGTNTQAAQRDSGKGGHGSYSTYQDGSDKITYLQFSYKDIDNLSLSDKGNSKLASDVVAALLLFQAADKGTQQLALSAINKPQLPIGDKRIKTGIDLLK
>NZ_CP010539.1|WP_014325543.1|48697_49555_-|ECF-transporter-S-component
MFPYYPLKVTRNLQLLVWAAVLMALSFIFNIFSINVTSVLKVSFTRIPFALIGWMFGPVWGFTFGAIADTMDWLTRGYTWFWLFAIQKPMFCFLAGLVKGVYQVRQSSTNWKIDFWILQSILIGFFVLTLVLLLMYLTDGNFQAAGNQSFGRGFDVNVHILQGITMAAFISFFVGLEIFLGWKYTKVKKPKEMILNLYILMMALLMTLVVSLLIGTIASIEYLVFLSGKPSKNFVKYGSYFFLMPRVLVQALLMPLYLALFKPLIRIAENNLRNYLRVYNLSWKR
>NZ_CP010539.1|WP_010874805.1|49605_50952_-|hypothetical-protein
MTFSDLLTKLQDNLDIVFNANALKERIQSDPAFAKTIREQLKLLYFLEQKQAKAKTKKKDFQPVFQNLEARFVSLGQTKLANTELNLKLDLTDATDLANYLPIAVCNLFNRDLNSFSKLSSVQPTAVEKTTNGANKPTVTIDLNQPRIHTTGTVSPELENFVNESLEARARQRAFMRVTSERMVGKIFEFQFKSQWIKWAQLAIFISMLLIGAAAIAYLVVVNLLFYRYVNPDSNLTKAVTGQNNTDRPALVDLNGGINLFFPVSASTLITLIFLGFGSTSFLLAFQGKPYSFATRSQTFKAMHFLKHQFGVTDFPRINDNYRYKVRIKWIFWTIFLFVALNALPGGNIITGGILNPSFLLNALRSNELKINSETFKTIFVGFSIFYLASIIPFALISIIAFVLSPKPSSDQTNEVLNRYVQEEMQQPFKTDCDPNNDNDLTPPAVFG
>NZ_CP010539.1|WP_015344914.1|50963_51863_-|DNA-polymerase-III,-delta-subunit
MTVVYGADIGLIHQQLNQLLNPAACKQVWFQDVNKLYDVVLNQNLFAEDTKPILIHNCSFLEKNNLTKAELHCLKTLKDTDVVVTIYSDSPANALINDRAITKYACKPVTAKTIHQVISKAAKTLKLNLNPDLIDHLATILPFNLGVIEQELRKLTLLSPAELQDKKMLEAVLCDYQTSQILQLTDAMVRLQTAKALKLIERLFLPKQLTPPQFLEFLANELLLALMVKGVKPQAVFQLQWNVNPFRLKAIQSQYRFWSTNQLTALINAIWQLDIKIKRNDGLAIHLLKHFVLRFFAQK
>NZ_CP010539.1|WP_019830442.1|51786_52896_-|ComEC/Rec2-family-competence-protein
MKWKLFYFFTLLTFTPAYFFIEQNQWVVLASFLVIVNLISLTVHWKFGLLLISCSAALLAYCQLMPEFQLAKLMKANWLRTPFISWLDQHTSGVFNQYLKLFLINETTKNTLYQSAIQLNIVHLFVISGFHLSFLFGVMERWLYKRFYINKITGFVMLLLYLFLVGFAFSALRVFVSKLLRQMFPKQLPENNLGLTALLIILMSPGALHNFGFNFSFLACFVLFAINKVKLWKPLQAVLTSTLILIVVSPITLHLNRKLNALSVFHNLLFTPIALFYFCASWLLLPLIPWMGNSLVGFYWPLPWLSQWALNTTVFLNLPKPNWVFYLVYYGLWGLLYTVGTVFYYDRSLWRRYWVNSPAVKPTAQPSRL
>NZ_CP010539.1|WP_019830441.1|52935_54954_-|terminal-organelle-protein-HMW3
MTDKERAKLAKAYGKLAQKIQKSYPDINVVYGRDAKNKLHALYQDPETGNIFSLEKRKQLPADYPLFELDSDEPISFAPKIIPLTAFDGNNNEVIVQYDQVNNTFYDQDGNVLDVSGYRDGENIPLVDYLNYGGSTASADTTTSEPLSGEGYPDIDAGLPVVDPDATPEQQADQLFGLDPLPQAPDEYQDTTAPPVYDQTFDQATYDQQAYDQNYDPNAYYDQQAYDQSFDQQAYDQAYDANAYNTQNYDQAHDPNAYYDSQAYSDPDQASAVAPIEVAPLQPEPVAPVVEPTAVPIVESAPIVEVTPTVEPTPTPVVETAPVVEAPKVVKPTPTPVVEATPAPKVEPKVVEQPQPTPVTVEVDSPKVEIPKVVTAKVALQVAQPTPVPAVPKVAPQPTPAPVVVQPTAVVQPVVKAEPKVVTPTPAPQVVVTPQVATPKVTPKVVQTTPAVPPVVVQPEVVVQPIIRPTQPEPEWKPSPASVVEPQPCQSTCVNNESGAITIHTTNRSLLLEKLASLGHLHDASTRTPLPHERYQLAPPSEYVATKYNEPLFNLPAIRNSWARFTRPTVESTPIASRFTGVTPMAVNYRNPASLNFDSLNSFGAYRSPSSFYPLRRPLELSSLRRNRSSFFNTHRFDLGSNYTSFTPRYRSPLRGGLSQRFPLRSSWSKEF
>NZ_CP010539.1|WP_014325546.1|54967_55792_-|adhesin-P30
MKLPPRRKLKLFLLAWMLVLFSALIVLATLILVQHNNTELTEVKSELSPLNVVLHAEEDTVQIQGKPITEQAWFIPTVAGCFGFSALAIILGLAIGLPIVKRKEKRLLEEKERQEQLAEQLQRISAQQEEQQALEQQAAAEAHAEAEVEPAPQPVPVPPQPQVQINFGPRTGFPPQPGMAPRPGMPPHPGMAPRSGFPPQPGMAPRPGMPPHPGMAPRPGFPPQPGMAPRPGMPPHPGMAPRPGFPPQPGMAPRPGMQPPRPGMPPQPGFPPKR
>NZ_CP010539.1|WP_014325547.1|55812_56394_-|hypothetical-protein
MGFFKLLFKLAFLAVLTVAIAYLFLAIFYFGTVSPSFKLAQPMDVFNRFFSKEALDTVTTSGVGATVTAPKAAAASQSHALILAAEQVANNANKLDPRFPIDGSLFSQIPGYVDFLKKPNIPAFLEKVGPYLTKYIIPLGMALVSGLIGALIINFILSKITRAIIKKRRKAKRAQQSRDDDYYYDEAPRRRRR
>NZ_CP010539.1|WP_010874811.1|56482_57346_-|hypothetical-protein
MINQANNQVNFSEQQFVHHKRFSVIRLTFSVAAIGILFIFLIGFGVQQLLTNTTSLGTLASDIRTLGTIAFVASLVSLILYFVTAFKLRNRNTTLAWFWGLIIADVISYGITLGVLLTLATTQLRELIDFKFSDIVFAFLGAALVYGTVWGLSALPSQQRRYQQTQTLFRIFIWAFFISIIASLLTFVLNFTVFRGGRTNILDLLFPGLSLIVGGIFSLLSVYFVCLQIRNEQDLVKLYESQDPALAKAQMWRSALFFGAWLVSSFMNLVYFILRIILLTRNLSRAF
>NZ_CP010539.1|WP_014574990.1|57671_60689_-|hypothetical-protein
MKFQRKYWGLLSTLGVSSAVALSACAAQARDVYVTSSASDLLKNNSVPMSMFNVSPTSSFFGSKYAGLTTYIATGSNKDDGVNVTTQTQEKLVLELATSVKGYKKKDKATSSQKTSTNSSCTTTSSGTSTSGEDDWECIGEIKRQSSSNGQNNQQSKSITEEEKFQEISQKATRYEFAIDTGIKWVDNNGKPVKDASGNDVKLSSKDFERGFEAYILSSELRFNRNGYFIDLMGLDVKKTVGMTKKNGTQVQMKVASSDEKDGEEKTVKITDDAYNPEDYQSTDDSKFNVYLTSPFPFLLSMMSKEFFFPIPHTHPKVKAIKVGKDSPLVYNEKNGSKILDQTKTNFDGIYGGGVNAWRDTWSVGPYYVESFNQSQIVFKRNSEYDTHITPNLPKTREENEKPIPTMINYFQPGATPEVFYSNYIAGGLSSAEVPYSQQEDARSRFAGTGDLRWVKVQKTAQSAQITYSSRPYVVEGETVKTNSNITETEAKFLYNSESEEALTIRAGINGLINWQNLAIILLPNSGDLNYSIVPFGIFKEKGKNGASVQQKAVSTTEGSDLMNDYYYKIEKEQRLGLIPQREGNYEKNKNVLESATVKINYYSSKATSGQAGAAASAAFAKNNNTSDNTQQNQTSSVEAKSVNVTKHSFVQVLKKVGFSGSNPLHFNMKLGNSSLSANGVDYYNAVKQALTELGTADNGEKLIVPEIILGDAQGPTRNEWYIGLSSVLGFSSWSPDYDGVGTWLDAATQLNDQGGGDVITYSSGAHIVRTLLLAASQKDVHSKFTQKIDQQNTASTTSDVTVKKADSSQDSSKSNTEEEKWDDVTSADLFKDDPYVLKNFGDAKAQAAQRSTGSTTSGNGTQASLEFTKKALSLLKFLVDNGILDKEKVKEAIKDPNKYLGKRDKIENGTNKPSKNEDFIGYELKDIYKNAAQLNRFNSIWAEKDTDNAKFLITVVDSYFPVLPVPAAGLNETSPTLLKPWFQFRSAPSGNGTIRDYGFIPENK
>NZ_CP010539.1|WP_010874816.1|61512_63210_-|cation-transporter
MTAAHKQKAKLLAWLKLILWGDSISQRIFHFYIYCILLGAVLLFLPFALKTDYQKVISYEVDLQGHTISKQTASYGFLDALFLAVSAFSDTGLSTTVVSETYSVFGQTVLAILLQLGGIGFVVIAFLVWRLFKLHKKGKYSFYEKLMLQSERGGSKLGTTSEMIVVSVLFLFMVELLYGFLYTILFYFIPAFESASVFQSSGKVSNQLKALIVDSTKRLPVVHNLNLAFQYGFFHSLSAVNNAGIDLLGANSFAPYRTNWGIVIQWLAISQIIFGGIGYPVLFDAYEAIKKRRLYGKYYKHQFSLFTKLAVLTNLIVTAWCFLMLLMVEFIVITSLTNTIAHLNVEKAYLVEGLKNKSNQELQSLIFGPIPAASRVMQLWFGVISSRSAGFSVFPWSAESDIIKGIMVIAMFIGGSPSSTAGGIRTTTLAVIFLTLKAKFRGQKEVKVFKRSIDGQTVINAFLVAVFGLVSVVLIAILLPLSMQQPLSFVDSLFETTSAFGTVGLSSGATKIMALEPTRNLFNYLTLGLLMIMGQVGVSSSVLTFVKKHPQGNSFSYPREDVKVG

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Crispr_ID: NZ_CP010539_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010539_3

462407-462505

Orphan

Consensus_repeat	Method
AGAGAGAGAGAGAGAGAGAGCAACTTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010539_3

>merge|NZ_CP010539|3|462407-462505|CRISPRCasFinder
AGAGAGAGAGAGAGAGAGAGAGCAACTTAGAAGATCAGCCTTCTAATGGAATAACACACACACACACACACAGAGAGAGAGAGAGAGAGAGCAATTTAG

>NZ_CP010539|3|3|462407-462505|CRISPRCasFinder
AGAGAGAGAGAGAGAGAGAGAGCAACTTAG	AAGATCAGCCTTCTAATGGAATAACACACACACACACAC
ACAGAGAGAGAGAGAGAGAGAGCAATTTAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010539.1\|WP_010874474.1\|472584_472968_+\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
NZ_CP010539.1\|WP_014325339.1\|446147_447773_+\|P80-family-lipoprotein	unknown	unknown	gnl\|CDD\|308751
NZ_CP010539.1\|WP_010874469.1\|468289_468682_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340883
NZ_CP010539.1\|WP_017532749.1\|465555_466137_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010539.1\|WP_014325346.1\|457869_460287_+\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|273097
NZ_CP010539.1\|WP_014325347.1\|460399_461155_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|223897
NZ_CP010539.1\|WP_014325348.1\|461156_462371_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|223897
NZ_CP010539.1\|WP_017532748.1\|463073_465650_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|350769
NZ_CP010539.1\|WP_014325341.1\|450579_451131_+\|DUF16-domain-containing-protein	unknown	unknown	gnl\|CDD\|366686
NZ_CP010539.1\|WP_010874473.1\|472394_472574_+\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
NZ_CP010539.1\|WP_017532750.1\|468663_469902_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340885
NZ_CP010539.1\|WP_010874462.1\|456841_457867_+\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|273095
NZ_CP010539.1\|WP_010874471.1\|469891_471694_+\|choline/carnitine-O-acyltransferase	unknown	unknown	gnl\|CDD\|376382
NZ_CP010539.1\|WP_015344874.1\|450328_450580_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010539.1\|WP_143826182.1\|467575_467983_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010539.1\|WP_010874455.1\|448070_448514_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367390
NZ_CP010539.1\|WP_015344875.1\|456204_456471_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010539.1\|WP_017532743.1\|451587_452865_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274811
NZ_CP010539.1\|WP_014325354.1\|471783_472389_+\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|129272
NZ_CP010539.1\|WP_017532747.1\|462717_463056_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP010539.1\|WP_010874474.1\|472584_472968_+\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	3.61638e-56
NZ_CP010539.1\|WP_014325339.1\|446147_447773_+\|P80-family-lipoprotein	gnl\|CDD\|308751	pfam03305, Lipoprotein_X, Mycoplasma MG185/MG260 protein. Most of the aligned regions in this family are found towards the middle of the member proteins.	1.07494e-74
NZ_CP010539.1\|WP_010874469.1\|468289_468682_+\|hypothetical-protein	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.67926e-05
NZ_CP010539.1\|WP_014325346.1\|457869_460287_+\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|273097	TIGR00472, Phenylalanine--tRNA_ligase_beta_subunit, phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end. [Protein synthesis, tRNA aminoacylation].	0
NZ_CP010539.1\|WP_014325347.1\|460399_461155_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	4.14998e-18
NZ_CP010539.1\|WP_014325348.1\|461156_462371_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	1.29204e-82
NZ_CP010539.1\|WP_014325341.1\|450579_451131_+\|DUF16-domain-containing-protein	gnl\|CDD\|366686	pfam01519, DUF16, Protein of unknown function DUF16. The function of this protein is unknown. It appears to only occur in Mycoplasma pneumoniae. The crystal structure revealed that this domain is composed of two separated homotrimeric coiled-coils.	9.89201e-28
NZ_CP010539.1\|WP_017532748.1\|463073_465650_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|350769	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA. In bacteria, RapA is an RNA polymerase (RNAP)-associated SWI2/SNF2 (switch/sucrose non-fermentable) protein that mediates RNAP recycling during transcription. The ATPase activity of RapA is stimulated by its interaction with RNAP and inhibited by its N-terminal domain. The conformational changes of RapA and its interaction with RNAP are essential for RNAP recycling. RapA is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	0.00140798
NZ_CP010539.1\|WP_010874473.1\|472394_472574_+\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	7.31821e-16
NZ_CP010539.1\|WP_010874462.1\|456841_457867_+\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|273095	TIGR00468, Phenylalanine--tRNA_ligase_alpha_subunit, phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment. [Protein synthesis, tRNA aminoacylation].	5.66465e-148
NZ_CP010539.1\|WP_010874471.1\|469891_471694_+\|choline/carnitine-O-acyltransferase	gnl\|CDD\|376382	pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltransferase.	6.82726e-78
NZ_CP010539.1\|WP_017532750.1\|468663_469902_+\|hypothetical-protein	gnl\|CDD\|340885	cd17327, MFS_FEN2_like, Pantothenate transporter FEN2 and similar transporters of the Major Facilitator Superfamily. This family is composed of Saccharomyces cerevisiae pantothenate transporter FEN2 (or fenpropimorph resistance protein 2) and similar proteins from fungi and bacteria including fungal vitamin H transporter, allantoate permease, and high-affinity nicotinic acid transporter, as well as Pseudomonas putida phthalate transporter and nicotinate degradation protein T (nicT). These proteins are involved in the uptake into the cell of specific substrates such as pathothenate, biotin, allantoate, and nicotinic acid, among others. The FEN2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	0.000256757
NZ_CP010539.1\|WP_010874455.1\|448070_448514_+\|hypothetical-protein	gnl\|CDD\|367390	pfam03202, Lipoprotein_10, Putative mycoplasma lipoprotein, C-terminal region.	8.99098e-44
NZ_CP010539.1\|WP_017532743.1\|451587_452865_+\|hypothetical-protein	gnl\|CDD\|274811	TIGR03839, Adhesin_P1, adhesin P1. Members of this protein family are the major adhesin of the Mycoplasma terminal organelle. The protein is called adhesin P1, cytadhesin P1, P140, attachment protein, and MgPa, with locus names MG191 in Mycoplasma genitalium and MPN141 in M. pneumoniae. A conserved C-terminal region is shared by additional paralogs in M. pneumoniae and M. gallisepticum, as well as by the member of this family. [Cell envelope, Surface structures, Cellular processes, Pathogenesis].	8.89346e-163
NZ_CP010539.1\|WP_014325354.1\|471783_472389_+\|translation-initiation-factor-IF-3	gnl\|CDD\|129272	TIGR00168, Translation_initiation_factor_IF-3, translation initiation factor IF-3. infC uses abnormal initiation codons such as AUA, AUC, and CUG which render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression [Protein synthesis, Translation factors].	5.87836e-82

>NZ_CP010539.1|WP_014325348.1|461156_462371_+|class-I-SAM-dependent-methyltransferase
MSQNGDKDHELIQGKVKSKTEIEDSVILDQDTLQGKGEEKTKLDELIRWEAEKNDLLKLIDNVGNDEVFTTVETCQRMLDDLFPQDHEVWSNPDLKWLNPCDKNGVFFREIALRLDKGLAKVIPDEYERKKHIMTKMLFSIDLTKFTSLMVRRTLYYCIKANKRKTSEDEGCAIANGAWFNNECGNVVKPYKEHYFDKQGKNKKCKFCRTDEKFKYQQSSSNEKYAYDFIHLNPNEYESYFKTNFGVMKFDVIIGNPPYQLANNRGGDAGDGNGANPIFQEFILRALELQPKYLAMIVPARWINSSEKVFLKFRAKLQKSNGFKGINIFFDSKHCFPNRQIKGGVCYFNWQNGYEGQTLITTKSSKKGKQEEIETYKRDFFAPVLNNTEQVIFRKKFNTTFIKR
>NZ_CP010539.1|WP_014325347.1|460399_461155_+|class-I-SAM-dependent-methyltransferase
MTNQNLQDFLDGVLLKEENLNKITEVSLEKGLPHLLDEGIHNEDNFQIFTSQKIVADMIKMVGVKEMKNVHTTVLEPTSGDGAFTCAILDLRLKNIKKSDSFLKEALTGLSTIYSVEIDEELVWLQRNNLYSIFLAFLKKHGIFNEELSLLVKKILMINVSWGELITETKDNENFVCNYDYFLRNKKTKKKPAKHKHEFPEGLFSNGEGKCKSLFVNWSFADVINEIAHNSNFDFAKIAKIPGEIIQFQIN
>NZ_CP010539.1|WP_014325346.1|457869_460287_+|phenylalanine--tRNA-ligase-subunit-beta
MLISKKTLAVLIPEITHVSNNEICEKLQQIGIEVEAIRAFKNPDYLQLGILRAVTPHPHDNHLYVCQVQIDKNKQLNVVTGAVNIVDPNNLNKHVIVAKKGAELLNGLIIKTKNIKGIISDGMLCSYVDINPFSKHLIADGDDTHAIVLDNINRDEFGDYLSFLNLDDVVFEVTLPTNRSDLQSLIFLAKELAAVLKRPIFLEQKTTMTLREFYRFPLNLRNRAQANFFGGLFLRDVAITSSPWTTKGLLINQELRPVNCFVDQANMVTVYTGQPIHCHDADKIHGSVELKLATQLETMLALDNKEYEIKPGDLVVADEQGTIAIVGIIGSKRTMVDNTTNNIFFEVVNYNHERIKQTAQRLGVANFASRLMSKPISLQATENCLNYLQNNFLNPESIGKISKFSSTIKAPAFNRKIYLNFNQLRELIGVTKKQLNDYMIRNYLTSLGFKMENQIARAPAYRQDITVWQDISEELLKILDLNKIKEDEILSTTKLEKHEKLNAYDALQKLRTKLQTLGFHNVITYQLISPERARNFNLFGLSNLWEIKNPLSNERSVLRVGLIDSLLRVIQKNAAYKNKLGNIFEFSFVKTKDSNQLHIAALWLEKMFGSTYQKDQGVSVDIPAMKGLAQLIISNFGFNCDFEPITEGEYFTKNVGLKLVVFNEQIGYVGLIKDELLAPYDLKGRPVYGLEINLDRLLNSLNRLERSYTPISKLQDVFKDITFSFPRDESHFETFVKAIKKLQTIFKWELISVFDTEKDGVPITKYTVRYYLKNFTNTPLTLEQIKAVETQLKQQCELAKIALDL
>NZ_CP010539.1|WP_010874462.1|456841_457867_+|phenylalanine--tRNA-ligase-subunit-alpha
MIDQSKLIERWKTTFETAQNPTELLAFKNSFRNADLKPLLSQIKETTDIETKRHLGQLYKQLESTLQTLHDTQLQVFTQAQSSSVLTHGDVMLLATSFAPGSSNIIYQVIDELVNYFKKFLFTVNYDSELTTIADCFDLLNIPKDHPSRNLTDTFYLDKNRLLRTHCTAATLRAVKETKKSNNPDIRIASFGAVFRKDDDDATHSHQFNQLDFMWIKKDFSLTNLKWFMQNMINHIFGENTSARFRLSHFPFTEPSFEIDIRCWLCQNGCGVCKKTRWIEVLGAGILHPQVMANMGFSDTDNIRGIAAGIGIERLVMLKHGISDIRDLYDNNFKFLAQFTD
>NZ_CP010539.1|WP_015344875.1|456204_456471_+|hypothetical-protein
MKDETNICSQSLKRPLSEDQLIEYLSTYEITLFEVYAEDMLDGNCKIYIHAKGRPKDPDWKRKTDKKSLEIERYVKKFIKFLKREQKK
>NZ_CP010539.1|WP_017532743.1|451587_452865_+|hypothetical-protein
MRDNSAKGITAGSESQQTTYDPTRTEAALTASTTFALRRYDLAGRALYDLDFSRLNPQTPTRDQTGQITFNPFGGFGLSGAAPQQWNEVKNKVPVEVAQDPSNPYRFAVLLVPRSVVYYEQLQRGLALPNQGSSSGSGQQNTTIGAYGLKVKNAEADTAKSNEKLQGDESKSSNGSSSTSTTTQRGGSSGDTKVKALQVAVKKKSGSQGNSGEQGTEQVELESNDLANVPIKRGEESGQSVQLKAADFGTTPSSSGSGGNSNPGSPTPWRPWLATEQIHKDLPKWSASILILYDAPYARNRTAIDRVDHLDPKVMTANYPPSWRTPKWNHHGLWDWKARDVLLQTTGFFNPRRHPEWFDQGQAVADNTQTGFDTDDTDNKKQGFQKEADSDKPAPIALPFEAYFANIGNLTWFGQALLVFGICLS
>NZ_CP010539.1|WP_014325341.1|450579_451131_+|DUF16-domain-containing-protein
MKEKIPFYNEKEFHDMVKKTKKGTFSGWYIIDKDNKSVEFSGSFNRQFKLNKPVIPVNTEYVTRKEFNEYKVSNDQRLTKIETTLAAQGEQINKLTQTVEKQGEQINQLVQVVLLHGEQINKLTQTVEKQGEQIKELQVEQKAQVEQIKAQGKQIKAQGKTLKSILQALGGINKRLDKIDPPK
>NZ_CP010539.1|WP_015344874.1|450328_450580_+|hypothetical-protein
MKLVKLTRLHRFLKQVQLQLVPLFSQNFLQVLLALLNKPVNLFSENTTMKTNKKYAFAALLMQAQAKLPNSFKFFLSKKGGMA
>NZ_CP010539.1|WP_010874455.1|448070_448514_+|hypothetical-protein
MMTQGPNLIGIHTNTKENEETQKFVNWFLNTSLTWDNNESKTPAQYFTESASYILPLKETFTGSNNKGQSGKNDGKNSNNTFKAKALELFKEQSENKIVGYSDPSDFRGGKFRESIGSAFNATVNSHVDFNTFVANFRANLGSGYDK
>NZ_CP010539.1|WP_014325339.1|446147_447773_+|P80-family-lipoprotein
MQFKYGALIFSGFLGLSIVLASCGARGKFDQVDDGKIKLASSLTSRSASAALQKVVEKYNKVKGVNDYPIEITQIAGGYDGGRTDLQTRVSVKDKTSFYNMILNYPDLVSVLARNGMELPFDGVNVDKLSPNFLKFNERISGVAKKANYAIPISMSTDILILNAPVLHYILNSVKKNDGNTKVQVKAQSKDSQTKVKGTMEIGTDESTKNLWSDIQKKAGENGKATTEGTKKAAAKSTHLTLLTKSEQSTQGNNGASESDKKIEETWGTYSEVDGGLKNYTFKADVFDTWHGLIDFSTRVAKSFKNKVSDISTKKGTDIQGVLGLDSTPNALFTSVFAAGDSNFDNFFYKVKDGRADFSNFNENGTSYKNLEKVFNDYKKLTDSNGLFVNKGGSYTSNFQKFHQLAYSISSSSGYAYAFAGENSKRLKFNDDTFIEYPSFTQEIHAPGQSSQKEGGQQQSNSKDNGNLLGTFTIEAAKSKTKTEVKKTEDTQNQGKKAEGTPNQGKKAEGTENQGKTIFLYKTSIPNDKQDGVDAVLIKDK
>NZ_CP010539.1|WP_017532747.1|462717_463056_+|hypothetical-protein
MPRITGSGVFGDYRPNIKIVEPTGVCTHSYVVAYLTTNKFEVENVFLYMKTKFFRFFVEIFKATINISSHNFKYVPIQDFSRPWNDRELYQKYNLTQEEWQYIENNISSYEN
>NZ_CP010539.1|WP_017532748.1|463073_465650_+|DEAD/DEAH-box-helicase-family-protein
MKFKLNFHEKINQKDCWQSLIDHKERSYSLDFVNNTEKELPLIYGYEVKDFENHGVKIGYTTCKPSEKIQSAIEERILSQEKEFRFLDENIEKIEEVKVIFWAIAINEKDESFKDYSLHSFIKEKNLLKESQAGGEWFIVDENKDKFEYLSQIFRQFRAPFLFKNKEIYTPRKEQAACVEVLERYFQANPENGRFLMNCKMRFGKCFTLYSYAQKNNINKILILTFVPAVEESWKDDLNHIEKNYKFYTDDDLQKSNFDLKNQNEPYVVFLSLQNVLGKQRIDGAKTDFDKERISKLQEIDFDLIVFDEYHYGANKKRTQIKVEKVNKKIDNPEQQDNQDDAEEELASTFKLKDIKSKFQFSYKQLVCLSGTPFSSLRNNEFSSKDQVFTYSYFDEQKAKSAENHPLKLGQYGIFPEMNIYCFELAEIFTAQEQEIFITPGKGKNKLPEISFRKLFQTENVSKESSKPVYRFVNENLVEKLIDSLIDKRKGFSHTPLSWENIDKHKHSLLILPTRVACFALANLLKNHWYFENNDFQIINMSESQFGNGKKALIELNKHLDEAKKTNKNTLTITVAKLTIGITVKEWSTVFFLKDLKGAESYFQTIFRIQTPYIKNCKNLKEICYVYDFNMYRCLEVTNEYSKQTQTDPKFSASWFQNLDKFLPIYLVRGDEIQKTDPEILQKYEYFIMDKRAFSTRWMDESNIIDIDVLCNVGQDEDAQKILKKILAHKKFKSSKKKREFEDVHLEKSPKSEAFSEGVRSGKDYAAEQGNVLEELENFWNFNQALEQKAKAEFQQKNFDDNEWNNYKKGFNFGVNKHFEDKVSIKKIVQNKIKDFKKRKGRTTSTFKKWKWLYFWWE
>NZ_CP010539.1|WP_017532749.1|465555_466137_+|hypothetical-protein
MFRIKSKTLKKEKEEQLQLLKNENGYISDENNLKKLRDLIKEYVQNRSNIPPELDWFFYRDRFIQLFEKSCYQHFKKKTLTEEQKEKKKKVNDNFDSLMHTWARVLHFLYVSVYREKTLRDVLNKTDPKVFSVAVGIEMDEFSKIQKFFKVENMNRLIEQFSFRESVKTENTEKSQYRNSFNWFGFGPDSLKS
>NZ_CP010539.1|WP_143826182.1|467575_467983_+|hypothetical-protein
MDIKDIPQIKNNEEIAKYKIIVPHVYSRGNGTFGNYKPKVKIIKPNEICTETYLVVYPTESKVEIENVASYMRTKFFRFLVEIFKDSINTNSQNFKFIPLQDFSRPWNDRELYEKYGLTLEEQQYIEANISAYED
>NZ_CP010539.1|WP_010874469.1|468289_468682_+|hypothetical-protein
MLDKLLQKFRDQKKPVFHKEEGYWEISALRKWAAILIIAFGAGIIYIVPYFAFFQFKTAVANVTGVEPNRISLLLTAYGIVSLLFYIPGGWLADRISAKALFSVSMFGTGIITFWYFLVGLKGIVWITPN
>NZ_CP010539.1|WP_017532750.1|468663_469902_+|hypothetical-protein
MDYTQLVIIHVLYALSTVLTFWSAFIKSIKLLGPADEQARLYSTSEGSRYLIQVITGYISAGLGAIVLISTPFLIYKAPTAADPKNLASSSGIFFALLFYAICYVLAGLLSLFFLPGKFWEKRKIYLEDERIEYFNPVDQAYHIFKSEAELEAFKKHNTKVFWTKVWTDTKETLSSTSVWLIAFLIFFIMNVYQTIANFGTNILESLGLEAALSPTLSNTYIYGIPVLGAIFSGLINKKLTKSTAKSLIVQALFVILGTLAFLVITLASPAKPETGAFNQATLWIAFVVICFIMFFIGANRSIFWSTITELKVNKEIVGLAVGFISIIGFSKDVWLSPLLTGTTNQFIVKNSQGTSFYSQQALVAWAIFALINACLALLVTYMIVRKVKYGKVWVNPKFKKVFALGEQQYGH
>NZ_CP010539.1|WP_010874471.1|469891_471694_+|choline/carnitine-O-acyltransferase
MDTKLTPPWLRQENNLLNPEVTQRLFINQDNIPNLPTEAPQVYLARFLEWVEPLVSKVKFVKAQAAVQDYLNSKACAQIETIIAERAQNTHSSWLANWWVQYAYLTSTGPVSPEVNAPYYLELPTVGWSQAELAAALSAQLWHIYQQVQKRQLTSFSVKDKLFSLDTLQSIFASCQIHRADGDVYFVNDQPANFIVVIKNNVFYKLVIDNSGSLEQLQAQLQLSFVQILDNELSHPPHWNLLTATTTKAESQSLLDQLWAQNPEMLLDIYNSAFIVNLDNVELTTPLQLLRNSTWTPNFNRWHAKGIQLVITKNAQLVILADHTSFDGSSVATLANIFVSKLQKVNTEGASALTPTMLSFPTVDQDKQKYFKQLSKNFKDYVYNAVMFELKWDWFTKPLIKAKGIKNSEAFIHLCYQIAQYQTNKKLQNTYVAVDMRQYFRGRTECLRPLSKQSVAFVKRYCKDPKGTLKQFRKYYPAIESLHFEKTRLAQKGSGVNRHLLGAYLAWNEHQDTIAKPALFETKAWKTIAANPLSTSSIVDKYLRNFSFDPVEPNGIGIAYAIDDTNFRAILSVYQHNLQYLKDWMKHFEQTVKTILKTLK
>NZ_CP010539.1|WP_014325354.1|471783_472389_+|translation-initiation-factor-IF-3
MPLILDQGCFVSESRFHRLAQNIKQGSRREREQKPLINDKIGFNEFILIDENGSNLGTVRRTDALKMAEEKQLDLVLIGSNPAKPIVKLLDFGRYTYDLKRKKRQSKKNQTIIQIKEVVVKPTIAKHDLEFKAKQTTGWAEKGYHVKFVVRAFGRVSTRIELIEKVFNDFYLLVEPAVEVQKPLTASSKTMYSALLIPRKK
>NZ_CP010539.1|WP_010874473.1|472394_472574_+|50S-ribosomal-protein-L35
MKVKSAAKKRFKLTKSGQIKRKHAYTSHLAPHKTTKQKRHLRKQGTVSASDFKRIGNLI
>NZ_CP010539.1|WP_010874474.1|472584_472968_+|50S-ribosomal-protein-L20
MRIKGGKQTRVRRKKWLKQASGSFGTRHASYKVAKQTVIQAAKYAYRDRRNKKRDFRSLWILRLNAALREQGMTYSVFINLLKKHNIEINRKVLSELAIKEPSKFNLIVQKVKSEQPKAAKPAALGN

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Crispr_ID: NZ_CP010539_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010539_4

660271-660564

Orphan

Consensus_repeat	Method
TGCCGAGCTAAGTGCCGA	CRT

5 spacers

The CRISPR arrays of NZ_CP010539_4

>merge|NZ_CP010539|4|660271-660564|CRT
TGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGTTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGA

>NZ_CP010539|4|1|660271-660564|CRT
TGCCGAGCTAAGTGCCGA	GCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAG
TGCCGAGCTAAGTGCCGA	GCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAGTGCCGAGCTAAG
TGCCGAGCTAAGTGCCGA	GCTAAGTGCCGAGCTAAG
TGCCGAGCTAAGTGCCGA	GCTAAGTGCCGAGCTAAGTGCCGAGTTAAG
TGCCGAGCTAAGTGCCGA	GCTAAGTGCCGAGCTAAG
TGCCGAGCTAAGTGCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010539.1\|WP_014574930.1\|652852_653986_+\|P80-family-lipoprotein	unknown	unknown	gnl\|CDD\|308751
NZ_CP010539.1\|WP_015344899.1\|656838_657087_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010539.1\|WP_014325436.1\|649057_650854_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|223557
NZ_CP010539.1\|WP_010874650.1\|669511_670066_-\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|100605
NZ_CP010539.1\|WP_080582797.1\|656410_656596_+\|DUF16-domain-containing-protein	unknown	unknown	gnl\|CDD\|366686
NZ_CP010539.1\|WP_010874651.1\|670104_670725_+\|DJ-1/PfpI-family-protein	unknown	unknown	gnl\|CDD\|153229
NZ_CP010539.1\|WP_010874637.1\|650932_652642_+\|ribonuclease-J	unknown	unknown	gnl\|CDD\|223668
NZ_CP010539.1\|WP_014325435.1\|647858_649058_+\|UDP-galactopyranose-mutase	unknown	unknown	gnl\|CDD\|272864
NZ_CP010539.1\|WP_080582798.1\|667458_668016_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|366631
NZ_CP010539.1\|WP_014325445.1\|668008_668599_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|224135
NZ_CP010539.1\|WP_010874644.1\|663469_663826_+\|DUF16-domain-containing-protein	unknown	unknown	gnl\|CDD\|366686
NZ_CP010539.1\|WP_073479252.1\|664422_665865_+\|P80-family-lipoprotein	unknown	unknown	gnl\|CDD\|308751
NZ_CP010539.1\|WP_014574938.1\|666876_667440_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341144
NZ_CP010539.1\|WP_080998059.1\|653995_654106_+\|P80-family-lipoprotein	unknown	unknown	gnl\|CDD\|308751
NZ_CP010539.1\|WP_014325439.1\|656053_656401_+\|DUF16-domain-containing-protein	unknown	unknown	gnl\|CDD\|366686
NZ_CP010539.1\|WP_019830444.1\|646429_647899_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|273107
NZ_CP010539.1\|WP_014325440.1\|657344_659729_+\|P80-family-lipoprotein	unknown	unknown	gnl\|CDD\|308751
NZ_CP010539.1\|WP_073479261.1\|666322_666787_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367390
NZ_CP010539.1\|WP_014325446.1\|668582_669512_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|161659
NZ_CP010539.1\|WP_010874652.1\|670773_671436_+\|DUF5454-family-protein	unknown	unknown	gnl\|CDD\|340250

Protein	Function_ID	Function_description	E-value
NZ_CP010539.1\|WP_014574930.1\|652852_653986_+\|P80-family-lipoprotein	gnl\|CDD\|308751	pfam03305, Lipoprotein_X, Mycoplasma MG185/MG260 protein. Most of the aligned regions in this family are found towards the middle of the member proteins.	5.58728e-43
NZ_CP010539.1\|WP_014325436.1\|649057_650854_+\|elongation-factor-4	gnl\|CDD\|223557	COG0481, LepA, Membrane GTPase LepA [Cell envelope biogenesis, outer membrane].	0
NZ_CP010539.1\|WP_010874650.1\|669511_670066_-\|signal-peptidase-II	gnl\|CDD\|100605	PRK00573, lspA, signal peptidase II; Provisional.	1.95676e-95
NZ_CP010539.1\|WP_080582797.1\|656410_656596_+\|DUF16-domain-containing-protein	gnl\|CDD\|366686	pfam01519, DUF16, Protein of unknown function DUF16. The function of this protein is unknown. It appears to only occur in Mycoplasma pneumoniae. The crystal structure revealed that this domain is composed of two separated homotrimeric coiled-coils.	2.71193e-07
NZ_CP010539.1\|WP_010874651.1\|670104_670725_+\|DJ-1/PfpI-family-protein	gnl\|CDD\|153229	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme.	1.19791e-40
NZ_CP010539.1\|WP_010874637.1\|650932_652642_+\|ribonuclease-J	gnl\|CDD\|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	0
NZ_CP010539.1\|WP_014325435.1\|647858_649058_+\|UDP-galactopyranose-mutase	gnl\|CDD\|272864	TIGR00031, UDP-galactopyranose_mutase, UDP-galactopyranose mutase. This enzyme is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate. It contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NZ_CP010539.1\|WP_080582798.1\|667458_668016_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|366631	pfam01420, Methylase_S, Type I restriction modification DNA specificity domain. This domain is also known as the target recognition domain (TRD). Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity subunit (this family), two modification (M) subunits and two restriction (R) subunits.	4.69409e-33
NZ_CP010539.1\|WP_014325445.1\|668008_668599_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|224135	COG1214, COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones].	4.30717e-43
NZ_CP010539.1\|WP_010874644.1\|663469_663826_+\|DUF16-domain-containing-protein	gnl\|CDD\|366686	pfam01519, DUF16, Protein of unknown function DUF16. The function of this protein is unknown. It appears to only occur in Mycoplasma pneumoniae. The crystal structure revealed that this domain is composed of two separated homotrimeric coiled-coils.	1.88634e-25
NZ_CP010539.1\|WP_073479252.1\|664422_665865_+\|P80-family-lipoprotein	gnl\|CDD\|308751	pfam03305, Lipoprotein_X, Mycoplasma MG185/MG260 protein. Most of the aligned regions in this family are found towards the middle of the member proteins.	4.01047e-77
NZ_CP010539.1\|WP_014574938.1\|666876_667440_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341144	cd17255, RMtype1_S_Fco49512ORF2615P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Flavobacterium columnare S subunit (S.Fco49512ORF2615P) TRD2-CR2. The recognition sequence of Flavobacterium columnare S subunit (S.Fco49512ORF2615P) is undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	2.58148e-78
NZ_CP010539.1\|WP_080998059.1\|653995_654106_+\|P80-family-lipoprotein	gnl\|CDD\|308751	pfam03305, Lipoprotein_X, Mycoplasma MG185/MG260 protein. Most of the aligned regions in this family are found towards the middle of the member proteins.	1.13732e-10
NZ_CP010539.1\|WP_014325439.1\|656053_656401_+\|DUF16-domain-containing-protein	gnl\|CDD\|366686	pfam01519, DUF16, Protein of unknown function DUF16. The function of this protein is unknown. It appears to only occur in Mycoplasma pneumoniae. The crystal structure revealed that this domain is composed of two separated homotrimeric coiled-coils.	3.67099e-11
NZ_CP010539.1\|WP_019830444.1\|646429_647899_+\|lysine--tRNA-ligase	gnl\|CDD\|273107	TIGR00499, Lysine--tRNA_ligase, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms. [Protein synthesis, tRNA aminoacylation].	0
NZ_CP010539.1\|WP_014325440.1\|657344_659729_+\|P80-family-lipoprotein	gnl\|CDD\|308751	pfam03305, Lipoprotein_X, Mycoplasma MG185/MG260 protein. Most of the aligned regions in this family are found towards the middle of the member proteins.	3.65661e-75
NZ_CP010539.1\|WP_073479261.1\|666322_666787_+\|hypothetical-protein	gnl\|CDD\|367390	pfam03202, Lipoprotein_10, Putative mycoplasma lipoprotein, C-terminal region.	5.84069e-52
NZ_CP010539.1\|WP_014325446.1\|668582_669512_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|161659	TIGR00005, Ribosomal_large_subunit_pseudouridine_synthase_D, pseudouridine synthase, RluA family. In E. coli, RluD (SfhB) modifies uridine to pseudouridine at 23S RNA U1911, 1915, and 1917, RluC modifies 955, 2504 and 2580, and RluA modifies U746 and tRNA U32. An additional homolog from E. coli outside this family, TruC (SP\|Q46918), modifies uracil-65 in transfer RNAs to pseudouridine. [Protein synthesis, tRNA and rRNA base modification].	2.18278e-129
NZ_CP010539.1\|WP_010874652.1\|670773_671436_+\|DUF5454-family-protein	gnl\|CDD\|340250	pfam17535, DUF5454, Family of unknown function (DUF5454). This is a family of unknown function found in Mycoplasma.	5.16858e-119

>NZ_CP010539.1|WP_014325440.1|657344_659729_+|P80-family-lipoprotein
MKLKYGTIIFSGLLGVSAILAACGARGKFDQIDDGKIVLASSLTSKGAANALQTIVKKYNEVKNIDDYPIEIIQIAGGYDGGRGNLQTKLSVKDKNSFYNLILNYPDVVSVLGRVGMELPFDKVRTDKLSPRFLDFNKRISAISKQGIYGIPVSLSTEVLVLNGPVLHYILSSAKGSSDKTQVSQTSSGLNQQKTLQKPLKIDTSDSSTSSLWTQIENAAKNNGKKANNSKSNRRSTDQSTQTHNDQGDASESDKKIKESWGDYEEVDGGLKGFTFKASIFDNWHDLLDFSTRAAKSFKKIKDNNTKKGTDIQGILGVDSSANSLFTSVFAAGNGDYDNFFYKVANGRADFSNFKNRGSSFQNLQSVFNDYKGLIDQNGLFVNKGGSYSSNFQKFHQLAYSISSTSGFYYSFAGNSAKRLKFGDNSFIEYPQYTVPIKAPSKNGDGNSTNSNSDLLGTFTLSSGKKSTDKSKSDSQQNQGKKVEGTPNQGKKAEGAQNQGKKENNSTTIEIYKNKIPDGKNAGKDAILIKDNNLIKQLEDAAKKNGAESNQKQGGESNGQKEQIIGYTTTGNVREDGNHIFRVDKINDEQYDRKIIVGVTVETLEQSSTLQSEEAIVLAAPGKYKSTDKKKVTITQGPNIIGIHANEKENAETQKFVDWFLNTEVDWPAKENSSNKQDQQNSTKKQTAAEFFVESASYILPLKEIFENKEKKENTSNSDKNKSSSQRKNTYAEKALELFQQISKDEIVSYSDPSDFRSGKFRDGIGSNFNAAVSSKADFNKFVKGFIATLGSEI
>NZ_CP010539.1|WP_015344899.1|656838_657087_+|hypothetical-protein
MKKVKVLEKPSVERMIEVLSDSEILKFDFSCYYLPDGTNETLIRIFFQEKVSSSVVTKDKNSLRLDEYLKDFISFLKTQRKN
>NZ_CP010539.1|WP_080582797.1|656410_656596_+|DUF16-domain-containing-protein
MNKLTQTVEKQGEKIEVQGQQIQTVNETLKFVVESLETIHKRLDVMEIRLDKLESKYIWFK
>NZ_CP010539.1|WP_014325439.1|656053_656401_+|DUF16-domain-containing-protein
MKEKISKKEYNALIRKTGEKHFDGEKEEYGDGTVGLWTYELRKYKLKPPVKVKYVTQEEFGEFKDATNQRLTKIENALVAQGEQIRAQGEQLSQLIKVVLLQGKQIKSQGEQIKS
>NZ_CP010539.1|WP_080998059.1|653995_654106_+|P80-family-lipoprotein
MKSNGLFVNKGGSYSSNFQKFHQLAYSISSTSGFKY
>NZ_CP010539.1|WP_014574930.1|652852_653986_+|P80-family-lipoprotein
MKFKYGTVVLGSFLGLSVVLAACGARGKFDQFDDGKIKLASSLTSKAAANALQTIIEKYNIVKSGKDYPIEITQIAGGYDGGRTDLQTRVSVKDKTNFYNLILNYPDLVSVLARSGMELLFDKVNVDKLEPNFLKFNEQISGVAKSGNYGIPVSLSTDILVLNGPVLHYILNSAKKEEANSQVKSQIKTSQIQAKGSLTIDTDENTKSLWEKIQNSAKANGETNQKGRKAAKSNKTALVQLKNGADTTTNEENKDTKTSDDKVKQTWGDYVEKDDGLKNYTFRASVFENWHDFLDFSTRVAKSFTEKVSNITNKKGTDIQGVLGVDSSPNVLFASVFAAGGGNYENFFYKVKDGRADFSNFKNKGSSYQNLQSVFKD
>NZ_CP010539.1|WP_010874637.1|650932_652642_+|ribonuclease-J
MIKDFDPSEFVGKTPTKIFAFGGIQEVGKNMYGIEYDDEIIIIDCGIKFASDDLLGIDGIIPSFEYLIENQAKVKALFITHGHEDHIGGVPYLLKQVDVPVIYAPRIAASLILKKVNEHKDAKLNKVVVYDDFSNFETKHFKIDFYRVNHSIPDAFGVCVQTPNGNIVESGDFRFDFAAGGEMLDVHKVVKIAERNVHVFMCETTNAEIPGFSQSEKLIYRNINKIIKEARGRVILTTFASNITRINEIIEIAVNNKRKVCLLGKSMDVNVNISRKIGLMDIDSNDIVEVRDIKNYPDRSILILCTGSQGEDSAALNTMARGKHNWVSLKSTDTIIMSSNPIPGNYAAVENLLNELSKYGVTIFENSPNMKLHASGHATQQELQLMLNLVFPRYLIPIHGEYKMMRTIKNIAQECGINGDDVGLLANGQVMYLIDGKLYYSGEVINADPIYIESRNSSPDLARVIKQRQILSREGMFAVIVVFDKNNNILGMPTLITRGCFFALDSSPLMTKITHSIKRGLENVIQNKRFNTREQMIKELKRVCKETVSYFIWKNKSRNPLISTVLSWV
>NZ_CP010539.1|WP_014325436.1|649057_650854_+|elongation-factor-4
MEQQKIRNFSIIAHIDHGKSTLSDRLIERSIGFEKRLLQAQMLDTMAIERERGITIKLNAVQLKMAQGNQQYLFHLVDTPGHVDFTYEVSRSLAACEGVLLLVDATQGIQAQTISNTYLALENNLEIIPVINKVDMESADVEKTKQAFHQLLGVDPNTIPLVSAKTGLGIDRLITTIIEKVPPPKGDESKPLKALLFDSYYDPYKGVVCFIRIFEGSLKLNDKIRFARSNSVYQIVELGIKNPFFEKQDVLKAGEIGWFSAGIKKLRDVTVGDTIVHAEDTTTPPLPGYKKVLPMIYCGLYPIDNNDYQNLKMAMEKIILSDAALEYEYETSQALGFGVRCGFLGLLHMDVIKERLEREYNLKLISAPPSVRYKVLLTNGEELELDNPSLLPERSRIKSISEPFVRVYIDLPDHYLGTVIDLCQNFRGQYEKLEEIDIDRKRLVYLMPLGEIIYSFFDKLKSITKGYASLNYEFDQYQVSQLAKVEIMLNKQKVDALSFIAHHDFAFQRAKKFCVKLKELIPKHLFEIPIQATIGSKVIARETIKAVRKDVTAKLYGGDVTRKKKLLEKQKEGKKRLKAIGSVELPQELFSHLLKDED
>NZ_CP010539.1|WP_014325435.1|647858_649058_+|UDP-galactopyranose-mutase
MTLFSFPNYVNWNKFDFIVLGAGISGIVLSHVLAQHGKSVLLLEKRNQLGGNCYDKLDETTGLLFHQYGPHIFHTDNQKVMDFIQPFFELNNYQHRVGLQLDNNLDLTLPFDFSQMRKLLDTKTASSLINFFQQHFPAEKHLTLMQLQTINFAPVQQLYQFLKTKVYGPYSVKMWGMPLEQIDPSVLGRVKISLSENSSYFPTATIQGLPKGGYTKAFTKMVDHPLIDLRLNCPANLISVNNNQLLFANQPITKPVVYCGLIDQLFGYCFGRLQYRSLHFEWKRYAVKQHQAYPVMNWPLHPTITRQVEYKQLTQEGLESNQTIVSCETPGAFREGDPRFMEPYYPLNDVSNNALFARYLKLANAIPNIHLLGRLALYQYIDMDRAIAQSLAKAEQLLQ
>NZ_CP010539.1|WP_019830444.1|646429_647899_+|lysine--tRNA-ligase
MSDRLNDQAQNRLQKLLNLKQTGNDPYLITKIENTHSAASFQKAFANQSDAELKQYQVILTGRIIALRQTFIIIQDFSGKMQLYINKKTAPELFEYFNNYIDLGDQIVATGHPMMTKTGVLTLNVERLQIVAKCLQTPPEKWHGLTDPEARTRKRYLDLTYNRAQVEVFLKRTQIITAIRTFLNEAGFLEVETPILQAVLGGANAKPFKTHYNALKGDFYLRIANEIALKKLIVGGLPKVYEMGRMFRNEGVDTTHNPEFTSIEMYQANADYAVMMDLTENLIKFVCKTLNQWSFNWNGQTLDLAKPFKKVKMVDLICQVTGVNFDDVKDDQTAIALAKQHKVELKKHEQNKQHIINRFFEQFCEHTLIQPTFVTHYPKAVSPLAKQDPHNPEFTERFELFINTKELANAYSELNDPLEQRARFEQQLQEKRMGNDEASELDESFLDALSFGLPPTGGLGIGVDRLVMLLCECSSIRDVVFFPQLRELK
>NZ_CP010539.1|WP_010874644.1|663469_663826_+|DUF16-domain-containing-protein
MGFSDNLNHMEKRKSGYVTQKQFSEFKDANNQRLIKIETTLATQGEQLNQLIKVVILQGEQIKELQVEQKAQGEQIKAKGEQIKAQSEQIKTQGETLKLILQALGGINKRLDKVDPPK
>NZ_CP010539.1|WP_073479252.1|664422_665865_+|P80-family-lipoprotein
MKFKYCAIFFSGFLGLSAILAACGARGKFDQVDDGKIKLAFSLTSKSASNALQAIVKKYNEVKKPGDYHIEITQIAGGYDGGRSDLQTRVNVKDTTNFYNLILNYPDLVSTLGRVGMELLFDKVNTDKLSDRFLDFNKRISAISKPGIYGIPVSLSTEVLSINGPVLHYILKSAKGDSDNVKVSQRTGETTQKSKVTNPLKINTQNDPATKDLWEKIEASAKANGKSNKDGQTKGKKKVEKSSSSSLVNLKQSTDQTTTDDGSQKSDNKIKESWGEYQEVDGGLKNFEFKASIFENWHDLLDFSTRVAKSFTNVKGKDIKKGTDIQGVLGVDSTPNSLFTSVFAAGGGDYNNFFYKIENGRADFSNFKNKGTSYQNLQKVFGDFKGLIDKNGIFVNKGGSYSSNFQKFHQLAYSISSTSGFFYSFAGNSAKRLKFGDNFIEFPRFTQEIKAPSTENGGQSNLLGTFEVKDSSKSKEVKKN
>NZ_CP010539.1|WP_073479261.1|666322_666787_+|hypothetical-protein
MTQGPNIIGIHANEKENAETQKFVNWFLNNTESWEVKNGKDSSTKQQTAAEFFAESASYILPLKEIFDKDNKKATENKDNNTSNKKQANTYAEKALDLFQQISKGDIVSYSDPSDFRSGKFRDGIGSNFNAAVSSKADFDRFVKGFIATLGSEI
>NZ_CP010539.1|WP_014574938.1|666876_667440_+|restriction-endonuclease-subunit-S
MQIKTYKIKDICDIKRGRVISKLYIKNNPGEFPVYSSATVNNGEIGRIKDCDLKGEYVTWTTDGAQAGSVFYRNGQFNATNVCGILKVNNDEIYPKFLAYALRLKAPKFVNYACPIPKLMQGTLAEIELDFPSKKIQEKIATILDTFTELSAELSAELSAELSAELRERKKQYVFYSDYLLNPKNWK
>NZ_CP010539.1|WP_080582798.1|667458_668016_+|restriction-endonuclease-subunit-S
MGEIAQKVLVGGEKPADFSKKKNEVYKYPILSNSSKAEEFLGYSKTFRVEEKSITVSARGTIGVVFYRDFAYLPAVSLICFVPKEEFDIRFLFHALRAIKFKKQGSATGQLTVAQFKEYGIHVPSLKKQKEIAAILDPLYSFFTDLNEGLPAEIELRKKQLDYYQNFLFNWIQKQKELVEQASTN
>NZ_CP010539.1|WP_014325445.1|668008_668599_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MRFFNKYKLFLDCAYKHLNIVLLDFKTNTVVDQLTIPVQQNLTELAVYHLEKLLKKNKVRNNTVRQFYVTTGPGSFTGQRVGAIIAKTWCTVNPNCQLFALNSLRLQIPYGCGISKISAGNEKNYCGLFTETTSEIALLAKPDFVKLCKANTELPLYENFENIDSIEELFLNNIERFELVENPQNLELLYLKDPVN
>NZ_CP010539.1|WP_014325446.1|668582_669512_-|RluA-family-pseudouridine-synthase
MEQTFSVTTAQRLDTFLATLLNLSRVKVAKLIVDGLVSVNGKKITKNGWLVQPEDRVHVNWSEELFEKVPVEVQPYDFPLDILYEDEQIMVVNKPNGLISHPTSFNESESLLGAALFHCNHQPVFLVHRLDRDTSGVIMLAKNQSSLLHLQKQLQQRVMKRYYLALVHFPLDSLSGTISAPLERVGNNKVMWKVGNSSNKAKNAFTKFTVLNQNEKAALIKCELLTGRTHQIRVHLQFIKHPVYNDPLYGLKGEQATEYGQYLHAQQISFIHPTLNKEMGFEAQLDKTFSDKLDNLNLKIANSLYALFQ
>NZ_CP010539.1|WP_010874650.1|669511_670066_-|signal-peptidase-II
MAKAPTFFSKLLKQILFANRKPFLYYKLALILFVGFVILFQVFMLRAALNGEKGINGANGTDVARSSFISIYVIGNKGVGFSLLADQPGLVYFLQGFLSFIALFFLVFSTSYNYIFWITTLAFGSLGNFFDRLTSGSGEVLDYFVFSGGNSVFNLADCCITFSFIGLFLSFLIQFFKEMKQTKS
>NZ_CP010539.1|WP_010874651.1|670104_670725_+|DJ-1/PfpI-family-protein
MDLLTTANKTPRIAKSRPVRIAIIITQKTNDLHATVPCFLWRKARYAVDLISAEAKASIMLEMGIHVRCDNTLSKTNFNQYTAAFIPHGNTTRLVEIDKLRKDLEKFVYKPKGPMRWLFSSGNGACVLKEFDLIAPDQLVTVQNEKEMVKLLGKNFIKQPVHVDKNIISCANSCGLTKFSFKVIEELSGIELARKTANLVDHIYKG
>NZ_CP010539.1|WP_010874652.1|670773_671436_+|DUF5454-family-protein
MNNTKNKSDWQLFLEDYRFYHEKEFDWITYLNHCLNSYPDFDILKFIRKYGPECEKSFLSLQSKTKADVYGVFTKQIKAGSVNEVLAQKLVQLDALRTNYLIGALYSTNKTQKKLFKQSWKNAKKQGYTKQEWLMTLVGLPFEKGEYHKQLYAHSRQEILDLVEAVKKLYLRPEKDDKLEFADSSKVSESKSIKVTNAVTLPSDDLDKELFEFSGEGGDE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP010539_4	4.2\|660373\|54\|NZ_CP010539\|CRT	660373-660426	54	NZ_CP010539.1	660265-660318	0	1.0
NZ_CP010539_4	4.2\|660373\|54\|NZ_CP010539\|CRT	660373-660426	54	NZ_CP010539.1	660517-660570	0	1.0
NZ_CP010539_4	4.2\|660373\|54\|NZ_CP010539\|CRT	660373-660426	54	NZ_CP010539.1	660529-660582	0	1.0
NZ_CP010539_4	4.3\|660445\|18\|NZ_CP010539\|CRT	660445-660462	18	NZ_CP010539.1	660265-660282	0	1.0
NZ_CP010539_4	4.3\|660445\|18\|NZ_CP010539\|CRT	660445-660462	18	NZ_CP010539.1	660553-660570	0	1.0
NZ_CP010539_4	4.3\|660445\|18\|NZ_CP010539\|CRT	660445-660462	18	NZ_CP010539.1	660565-660582	0	1.0
NZ_CP010539_4	4.5\|660529\|18\|NZ_CP010539\|CRT	660529-660546	18	NZ_CP010539.1	660265-660282	0	1.0
NZ_CP010539_4	4.5\|660529\|18\|NZ_CP010539\|CRT	660529-660546	18	NZ_CP010539.1	660553-660570	0	1.0
NZ_CP010539_4	4.5\|660529\|18\|NZ_CP010539\|CRT	660529-660546	18	NZ_CP010539.1	660565-660582	0	1.0
NZ_CP010539_4	4.3\|660445\|18\|NZ_CP010539\|CRT	660445-660462	18	NZ_CP010539.1	243595-243612	1	0.944
NZ_CP010539_4	4.3\|660445\|18\|NZ_CP010539\|CRT	660445-660462	18	NZ_CP010539.1	243607-243624	1	0.944
NZ_CP010539_4	4.3\|660445\|18\|NZ_CP010539\|CRT	660445-660462	18	NZ_CP010539.1	243619-243636	1	0.944
NZ_CP010539_4	4.3\|660445\|18\|NZ_CP010539\|CRT	660445-660462	18	NZ_CP010539.1	243631-243648	1	0.944
NZ_CP010539_4	4.3\|660445\|18\|NZ_CP010539\|CRT	660445-660462	18	NZ_CP010539.1	433064-433081	1	0.944
NZ_CP010539_4	4.3\|660445\|18\|NZ_CP010539\|CRT	660445-660462	18	NZ_CP010539.1	433076-433093	1	0.944
NZ_CP010539_4	4.3\|660445\|18\|NZ_CP010539\|CRT	660445-660462	18	NZ_CP010539.1	433088-433105	1	0.944
NZ_CP010539_4	4.3\|660445\|18\|NZ_CP010539\|CRT	660445-660462	18	NZ_CP010539.1	667323-667340	1	0.944
NZ_CP010539_4	4.3\|660445\|18\|NZ_CP010539\|CRT	660445-660462	18	NZ_CP010539.1	667335-667352	1	0.944
NZ_CP010539_4	4.3\|660445\|18\|NZ_CP010539\|CRT	660445-660462	18	NZ_CP010539.1	667347-667364	1	0.944
NZ_CP010539_4	4.3\|660445\|18\|NZ_CP010539\|CRT	660445-660462	18	NZ_CP010539.1	667359-667376	1	0.944
NZ_CP010539_4	4.3\|660445\|18\|NZ_CP010539\|CRT	660445-660462	18	NZ_CP010539.1	729770-729787	1	0.944
NZ_CP010539_4	4.3\|660445\|18\|NZ_CP010539\|CRT	660445-660462	18	NZ_CP010539.1	755642-755659	1	0.944
NZ_CP010539_4	4.4\|660481\|30\|NZ_CP010539\|CRT	660481-660510	30	NZ_CP010539.1	660265-660294	1	0.967
NZ_CP010539_4	4.4\|660481\|30\|NZ_CP010539\|CRT	660481-660510	30	NZ_CP010539.1	660541-660570	1	0.967
NZ_CP010539_4	4.4\|660481\|30\|NZ_CP010539\|CRT	660481-660510	30	NZ_CP010539.1	660553-660582	1	0.967
NZ_CP010539_4	4.5\|660529\|18\|NZ_CP010539\|CRT	660529-660546	18	NZ_CP010539.1	243595-243612	1	0.944
NZ_CP010539_4	4.5\|660529\|18\|NZ_CP010539\|CRT	660529-660546	18	NZ_CP010539.1	243607-243624	1	0.944
NZ_CP010539_4	4.5\|660529\|18\|NZ_CP010539\|CRT	660529-660546	18	NZ_CP010539.1	243619-243636	1	0.944
NZ_CP010539_4	4.5\|660529\|18\|NZ_CP010539\|CRT	660529-660546	18	NZ_CP010539.1	243631-243648	1	0.944
NZ_CP010539_4	4.5\|660529\|18\|NZ_CP010539\|CRT	660529-660546	18	NZ_CP010539.1	433064-433081	1	0.944
NZ_CP010539_4	4.5\|660529\|18\|NZ_CP010539\|CRT	660529-660546	18	NZ_CP010539.1	433076-433093	1	0.944
NZ_CP010539_4	4.5\|660529\|18\|NZ_CP010539\|CRT	660529-660546	18	NZ_CP010539.1	433088-433105	1	0.944
NZ_CP010539_4	4.5\|660529\|18\|NZ_CP010539\|CRT	660529-660546	18	NZ_CP010539.1	667323-667340	1	0.944
NZ_CP010539_4	4.5\|660529\|18\|NZ_CP010539\|CRT	660529-660546	18	NZ_CP010539.1	667335-667352	1	0.944
NZ_CP010539_4	4.5\|660529\|18\|NZ_CP010539\|CRT	660529-660546	18	NZ_CP010539.1	667347-667364	1	0.944
NZ_CP010539_4	4.5\|660529\|18\|NZ_CP010539\|CRT	660529-660546	18	NZ_CP010539.1	667359-667376	1	0.944
NZ_CP010539_4	4.5\|660529\|18\|NZ_CP010539\|CRT	660529-660546	18	NZ_CP010539.1	729770-729787	1	0.944
NZ_CP010539_4	4.5\|660529\|18\|NZ_CP010539\|CRT	660529-660546	18	NZ_CP010539.1	755642-755659	1	0.944
NZ_CP010539_4	4.1\|660289\|66\|NZ_CP010539\|CRT	660289-660354	66	NZ_CP010539.1	660265-660330	6	0.909
NZ_CP010539_4	4.1\|660289\|66\|NZ_CP010539\|CRT	660289-660354	66	NZ_CP010539.1	660517-660582	6	0.909

1. spacer 4.2|660373|54|NZ_CP010539|CRT matches to position: 660265-660318, mismatch: 0, identity: 1.0

gctaagtgccgagctaagtgccgagctaagtgccgagctaagtgccgagctaag	CRISPR spacer
gctaagtgccgagctaagtgccgagctaagtgccgagctaagtgccgagctaag	Protospacer
******************************************************

2. spacer 4.2|660373|54|NZ_CP010539|CRT matches to position: 660517-660570, mismatch: 0, identity: 1.0

gctaagtgccgagctaagtgccgagctaagtgccgagctaagtgccgagctaag	CRISPR spacer
gctaagtgccgagctaagtgccgagctaagtgccgagctaagtgccgagctaag	Protospacer
******************************************************

3. spacer 4.2|660373|54|NZ_CP010539|CRT matches to position: 660529-660582, mismatch: 0, identity: 1.0

gctaagtgccgagctaagtgccgagctaagtgccgagctaagtgccgagctaag	CRISPR spacer
gctaagtgccgagctaagtgccgagctaagtgccgagctaagtgccgagctaag	Protospacer
******************************************************

4. spacer 4.3|660445|18|NZ_CP010539|CRT matches to position: 660265-660282, mismatch: 0, identity: 1.0

gctaagtgccgagctaag	CRISPR spacer
gctaagtgccgagctaag	Protospacer
******************

5. spacer 4.3|660445|18|NZ_CP010539|CRT matches to position: 660553-660570, mismatch: 0, identity: 1.0

gctaagtgccgagctaag	CRISPR spacer
gctaagtgccgagctaag	Protospacer
******************

6. spacer 4.3|660445|18|NZ_CP010539|CRT matches to position: 660565-660582, mismatch: 0, identity: 1.0

gctaagtgccgagctaag	CRISPR spacer
gctaagtgccgagctaag	Protospacer
******************

7. spacer 4.5|660529|18|NZ_CP010539|CRT matches to position: 660265-660282, mismatch: 0, identity: 1.0

gctaagtgccgagctaag	CRISPR spacer
gctaagtgccgagctaag	Protospacer
******************

8. spacer 4.5|660529|18|NZ_CP010539|CRT matches to position: 660553-660570, mismatch: 0, identity: 1.0

gctaagtgccgagctaag	CRISPR spacer
gctaagtgccgagctaag	Protospacer
******************

9. spacer 4.5|660529|18|NZ_CP010539|CRT matches to position: 660565-660582, mismatch: 0, identity: 1.0

gctaagtgccgagctaag	CRISPR spacer
gctaagtgccgagctaag	Protospacer
******************

10. spacer 4.3|660445|18|NZ_CP010539|CRT matches to position: 243595-243612, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

11. spacer 4.3|660445|18|NZ_CP010539|CRT matches to position: 243607-243624, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

12. spacer 4.3|660445|18|NZ_CP010539|CRT matches to position: 243619-243636, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

13. spacer 4.3|660445|18|NZ_CP010539|CRT matches to position: 243631-243648, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

14. spacer 4.3|660445|18|NZ_CP010539|CRT matches to position: 433064-433081, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

15. spacer 4.3|660445|18|NZ_CP010539|CRT matches to position: 433076-433093, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

16. spacer 4.3|660445|18|NZ_CP010539|CRT matches to position: 433088-433105, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

17. spacer 4.3|660445|18|NZ_CP010539|CRT matches to position: 667323-667340, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

18. spacer 4.3|660445|18|NZ_CP010539|CRT matches to position: 667335-667352, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

19. spacer 4.3|660445|18|NZ_CP010539|CRT matches to position: 667347-667364, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

20. spacer 4.3|660445|18|NZ_CP010539|CRT matches to position: 667359-667376, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

21. spacer 4.3|660445|18|NZ_CP010539|CRT matches to position: 729770-729787, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

22. spacer 4.3|660445|18|NZ_CP010539|CRT matches to position: 755642-755659, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

23. spacer 4.4|660481|30|NZ_CP010539|CRT matches to position: 660265-660294, mismatch: 1, identity: 0.967

gctaagtgccgagctaagtgccgagttaag	CRISPR spacer
gctaagtgccgagctaagtgccgagctaag	Protospacer
*************************.****

24. spacer 4.4|660481|30|NZ_CP010539|CRT matches to position: 660541-660570, mismatch: 1, identity: 0.967

gctaagtgccgagctaagtgccgagttaag	CRISPR spacer
gctaagtgccgagctaagtgccgagctaag	Protospacer
*************************.****

25. spacer 4.4|660481|30|NZ_CP010539|CRT matches to position: 660553-660582, mismatch: 1, identity: 0.967

gctaagtgccgagctaagtgccgagttaag	CRISPR spacer
gctaagtgccgagctaagtgccgagctaag	Protospacer
*************************.****

26. spacer 4.5|660529|18|NZ_CP010539|CRT matches to position: 243595-243612, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

27. spacer 4.5|660529|18|NZ_CP010539|CRT matches to position: 243607-243624, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

28. spacer 4.5|660529|18|NZ_CP010539|CRT matches to position: 243619-243636, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

29. spacer 4.5|660529|18|NZ_CP010539|CRT matches to position: 243631-243648, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

30. spacer 4.5|660529|18|NZ_CP010539|CRT matches to position: 433064-433081, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

31. spacer 4.5|660529|18|NZ_CP010539|CRT matches to position: 433076-433093, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

32. spacer 4.5|660529|18|NZ_CP010539|CRT matches to position: 433088-433105, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

33. spacer 4.5|660529|18|NZ_CP010539|CRT matches to position: 667323-667340, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

34. spacer 4.5|660529|18|NZ_CP010539|CRT matches to position: 667335-667352, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

35. spacer 4.5|660529|18|NZ_CP010539|CRT matches to position: 667347-667364, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

36. spacer 4.5|660529|18|NZ_CP010539|CRT matches to position: 667359-667376, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

37. spacer 4.5|660529|18|NZ_CP010539|CRT matches to position: 729770-729787, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

38. spacer 4.5|660529|18|NZ_CP010539|CRT matches to position: 755642-755659, mismatch: 1, identity: 0.944

gctaagtgccgagctaag	CRISPR spacer
gctaagcgccgagctaag	Protospacer
******.***********

39. spacer 4.1|660289|66|NZ_CP010539|CRT matches to position: 660265-660330, mismatch: 6, identity: 0.909

gctaagtgccgagctaagtgccgagctaagtgccgagctaagtgccgagctaagtgccga	CRISPR spacer
gctaagtgccgagctaagtgccgagctaagtgccgagctaagtgccgagctaagtgccga	Protospacer
************************************************************

40. spacer 4.1|660289|66|NZ_CP010539|CRT matches to position: 660517-660582, mismatch: 6, identity: 0.909

gctaagtgccgagctaagtgccgagctaagtgccgagctaagtgccgagctaagtgccga	CRISPR spacer
gctaagtgccgagctaagtgccgagctaagtgccgagctaagtgccgagctaagtgccga	Protospacer
************************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

700425 : 707356

Staphylococcus_phage(16.67%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010874676.1\|700425_701289_+	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	5.4e-93	53.2
WP_010874677.1\|701290_701773_+	dihydrofolate reductase	A0A1B2IBQ4	Erwinia_phage	3.4e-12	34.4
WP_010874678.1\|701779_702799_+	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	1.0e-98	54.6
WP_014325461.1\|702801_703263_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	R4JF54	Bacillus_phage	1.1e-12	37.8
WP_019830460.1\|703286_705452_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	3.6e-178	45.8
WP_010874681.1\|705598_705901_+	50S ribosomal protein L21	NA	NA	NA	NA
WP_017532771.1\|705893_706196_+\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
WP_014325462.1\|706188_706503_+	50S ribosomal protein L27	NA	NA	NA	NA
WP_010874684.1\|706495_707356_+	deoxyribonuclease IV	A0A1V0SBL9	Catovirus	9.3e-29	31.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010539

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection