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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_021183 Clostridium pasteurianum BC1 plasmid pCLOPA01, complete sequence 0 crisprs RT 0 0 0 0
NC_021182 Clostridium pasteurianum BC1, complete sequence 6 crisprs RT,WYL,csa3,cas14j,PD-DExK,DinG,c2c9_V-U4,cas3,DEDDh 0 3 16 0

Results visualization

1. NC_021182
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_021182_1 88057-88345 TypeV-U3 NA
4 spacers
c2c10_CAS-V-U3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_021182_2 366595-366672 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_021182_3 1220463-1220573 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_021182_4 2220738-2220865 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_021182_5 4416526-4416624 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_021182_6 4648580-4648672 Unclear NA
1 spacers
cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_021182_5 5.1|4416563|25|NC_021182|CRISPRCasFinder 4416563-4416587 25 NZ_CP006906 Clostridium baratii str. Sullivan plasmid pCBJ, complete sequence 9596-9620 3 0.88
NC_021182_2 2.1|366618|32|NC_021182|CRISPRCasFinder 366618-366649 32 JQ823122 Persicivirga phage P12024S, complete genome 30672-30703 6 0.812
NC_021182_2 2.1|366618|32|NC_021182|CRISPRCasFinder 366618-366649 32 NC_018272 Persicivirga phage P12024L, complete genome 31470-31501 6 0.812
NC_021182_2 2.1|366618|32|NC_021182|CRISPRCasFinder 366618-366649 32 MN693342 Marine virus AFVG_25M9, complete genome 4874-4905 8 0.75
NC_021182_2 2.1|366618|32|NC_021182|CRISPRCasFinder 366618-366649 32 NC_015420 Lactobacillus buchneri NRRL B-30929 plasmid pLBUC01, complete sequence 52446-52477 8 0.75
NC_021182_2 2.1|366618|32|NC_021182|CRISPRCasFinder 366618-366649 32 NC_018611 Lactobacillus buchneri subsp. silagei CD034 plasmid pCD034-3, complete sequence 20859-20890 8 0.75
NC_021182_2 2.1|366618|32|NC_021182|CRISPRCasFinder 366618-366649 32 NZ_KX785328 Streptococcus suis strain 3366 plasmid unnamed3, complete sequence 17399-17430 9 0.719
NC_021182_2 2.1|366618|32|NC_021182|CRISPRCasFinder 366618-366649 32 NC_012923 Streptococcus suis BM407 plasmid pBM407, complete sequence 13396-13427 9 0.719
NC_021182_2 2.1|366618|32|NC_021182|CRISPRCasFinder 366618-366649 32 NZ_CP029399 Streptococcus suis strain HN105 plasmid unnamed1, complete sequence 2970-3001 9 0.719
NC_021182_2 2.1|366618|32|NC_021182|CRISPRCasFinder 366618-366649 32 MT074137 Bacteroides phage DAC16, complete genome 142852-142883 9 0.719
NC_021182_2 2.1|366618|32|NC_021182|CRISPRCasFinder 366618-366649 32 MT074142 Bacteroides phage DAC23, complete genome 144883-144914 9 0.719
NC_021182_2 2.1|366618|32|NC_021182|CRISPRCasFinder 366618-366649 32 MT074141 Bacteroides phage DAC22, complete genome 145327-145358 9 0.719
NC_021182_2 2.1|366618|32|NC_021182|CRISPRCasFinder 366618-366649 32 MT074139 Bacteroides phage DAC19, complete genome 144964-144995 9 0.719
NC_021182_2 2.1|366618|32|NC_021182|CRISPRCasFinder 366618-366649 32 MT074140 Bacteroides phage DAC20, complete genome 144963-144994 9 0.719
NC_021182_1 1.2|88152|34|NC_021182|PILER-CR,CRISPRCasFinder 88152-88185 34 MT520979 Enterococcus phage vB_EfaS-271, complete genome 25641-25674 11 0.676

1. spacer 5.1|4416563|25|NC_021182|CRISPRCasFinder matches to NZ_CP006906 (Clostridium baratii str. Sullivan plasmid pCBJ, complete sequence) position: , mismatch: 3, identity: 0.88

aaattaacttaacttgaatacatta	CRISPR spacer
atattaaataaacttgaatacatta	Protospacer
* ***** * ***************

2. spacer 2.1|366618|32|NC_021182|CRISPRCasFinder matches to JQ823122 (Persicivirga phage P12024S, complete genome) position: , mismatch: 6, identity: 0.812

caaaatcaaaaaaagattttggttctctactt	CRISPR spacer
taaaatcattaaaagattttggttctcaaata	Protospacer
.*******  ***************** * * 

3. spacer 2.1|366618|32|NC_021182|CRISPRCasFinder matches to NC_018272 (Persicivirga phage P12024L, complete genome) position: , mismatch: 6, identity: 0.812

caaaatcaaaaaaagattttggttctctactt	CRISPR spacer
taaaatcattaaaagattttggttctcaaata	Protospacer
.*******  ***************** * * 

4. spacer 2.1|366618|32|NC_021182|CRISPRCasFinder matches to MN693342 (Marine virus AFVG_25M9, complete genome) position: , mismatch: 8, identity: 0.75

caaaatcaaaaaaagattttggttctctactt	CRISPR spacer
attgatcaaaaatagcttttggttctctacca	Protospacer
   .******** ** **************. 

5. spacer 2.1|366618|32|NC_021182|CRISPRCasFinder matches to NC_015420 (Lactobacillus buchneri NRRL B-30929 plasmid pLBUC01, complete sequence) position: , mismatch: 8, identity: 0.75

caaaatcaaaaaaagattttggttctctactt	CRISPR spacer
taaattcaaaaaaatattttggttgtttctat	Protospacer
.*** ********* ********* *.* . *

6. spacer 2.1|366618|32|NC_021182|CRISPRCasFinder matches to NC_018611 (Lactobacillus buchneri subsp. silagei CD034 plasmid pCD034-3, complete sequence) position: , mismatch: 8, identity: 0.75

caaaatcaaaaaaagattttggttctctactt	CRISPR spacer
taaattcaaaaaaatattttggttgtttctat	Protospacer
.*** ********* ********* *.* . *

7. spacer 2.1|366618|32|NC_021182|CRISPRCasFinder matches to NZ_KX785328 (Streptococcus suis strain 3366 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

caaaatcaaaaaaagattttggttctctactt	CRISPR spacer
aacaatcaaaaaaagatttttattctaacaat	Protospacer
 * ***************** .****     *

8. spacer 2.1|366618|32|NC_021182|CRISPRCasFinder matches to NC_012923 (Streptococcus suis BM407 plasmid pBM407, complete sequence) position: , mismatch: 9, identity: 0.719

caaaatcaaaaaaagattttggttctctactt	CRISPR spacer
aacaatcaaaaaaagatttttattctaacaat	Protospacer
 * ***************** .****     *

9. spacer 2.1|366618|32|NC_021182|CRISPRCasFinder matches to NZ_CP029399 (Streptococcus suis strain HN105 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaatcaaaaaaagattttggttctctactt	CRISPR spacer
aacaatcaaaaaaagatttttattctaacaat	Protospacer
 * ***************** .****     *

10. spacer 2.1|366618|32|NC_021182|CRISPRCasFinder matches to MT074137 (Bacteroides phage DAC16, complete genome) position: , mismatch: 9, identity: 0.719

caaaatcaaaaaaagattttggttctctactt	CRISPR spacer
caaaatcaaaagaagaatttggtaaattatca	Protospacer
***********.**** ******   .**.. 

11. spacer 2.1|366618|32|NC_021182|CRISPRCasFinder matches to MT074142 (Bacteroides phage DAC23, complete genome) position: , mismatch: 9, identity: 0.719

caaaatcaaaaaaagattttggttctctactt	CRISPR spacer
caaaatcaaaagaagaatttggtaaattatca	Protospacer
***********.**** ******   .**.. 

12. spacer 2.1|366618|32|NC_021182|CRISPRCasFinder matches to MT074141 (Bacteroides phage DAC22, complete genome) position: , mismatch: 9, identity: 0.719

caaaatcaaaaaaagattttggttctctactt	CRISPR spacer
caaaatcaaaagaagaatttggtaaattatca	Protospacer
***********.**** ******   .**.. 

13. spacer 2.1|366618|32|NC_021182|CRISPRCasFinder matches to MT074139 (Bacteroides phage DAC19, complete genome) position: , mismatch: 9, identity: 0.719

caaaatcaaaaaaagattttggttctctactt	CRISPR spacer
caaaatcaaaagaagaatttggtaaattatca	Protospacer
***********.**** ******   .**.. 

14. spacer 2.1|366618|32|NC_021182|CRISPRCasFinder matches to MT074140 (Bacteroides phage DAC20, complete genome) position: , mismatch: 9, identity: 0.719

caaaatcaaaaaaagattttggttctctactt	CRISPR spacer
caaaatcaaaagaagaatttggtaaattatca	Protospacer
***********.**** ******   .**.. 

15. spacer 1.2|88152|34|NC_021182|PILER-CR,CRISPRCasFinder matches to MT520979 (Enterococcus phage vB_EfaS-271, complete genome) position: , mismatch: 11, identity: 0.676

ttatacacacaacaattaaacaaagatcagatag	CRISPR spacer
gcgtacaaacaacaattcaacaaagatactgaaa	Protospacer
 ..**** ********* *********   . *.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 276400 : 361077 80 Clostridium_phage(29.17%) terminase,integrase,portal,tail,protease,tRNA,capsid,coat attL 294638:294664|attR 369306:369332
DBSCAN-SWA_2 555153 : 593426 42 Clostridium_phage(63.33%) terminase,integrase,portal,holin,capsid,plate attL 554981:554997|attR 595389:595405
DBSCAN-SWA_3 998057 : 1031258 35 Bacillus_phage(37.5%) protease,transposase NA
DBSCAN-SWA_4 1588141 : 1639544 50 Clostridium_phage(28.57%) terminase,integrase,transposase,protease attL 1583027:1583043|attR 1629582:1629598
DBSCAN-SWA_5 1881694 : 1938724 67 Bacillus_phage(15.79%) terminase,integrase,portal,tail,protease,tRNA,capsid,head attL 1878385:1878401|attR 1920351:1920367
DBSCAN-SWA_6 2062400 : 2073063 7 Synechococcus_phage(28.57%) NA NA
DBSCAN-SWA_7 2344890 : 2358257 13 uncultured_Mediterranean_phage(42.86%) tRNA NA
DBSCAN-SWA_8 2536605 : 2547982 21 Bacillus_phage(27.27%) NA NA
DBSCAN-SWA_9 2552094 : 2577497 28 Brevibacillus_phage(16.67%) terminase,portal,tail,capsid,coat NA
DBSCAN-SWA_10 2701307 : 2748503 52 uncultured_Mediterranean_phage(33.33%) protease,terminase,transposase NA
DBSCAN-SWA_11 2752703 : 2782459 40 uncultured_Caudovirales_phage(25.0%) integrase,portal,holin,tail,capsid,plate,head attL 2756506:2756521|attR 2765772:2765787
DBSCAN-SWA_12 3079866 : 3139987 52 Tupanvirus(25.0%) portal,coat,tRNA,transposase NA
DBSCAN-SWA_13 3152310 : 3163166 16 Clostridium_phage(50.0%) integrase attL 3151804:3151819|attR 3161546:3161561
DBSCAN-SWA_14 3325601 : 3360581 34 Streptococcus_phage(28.57%) holin,tail,protease,tRNA,capsid NA
DBSCAN-SWA_15 3373722 : 3381344 14 Listeria_phage(16.67%) integrase attL 3371761:3371775|attR 3382757:3382771
DBSCAN-SWA_16 4377832 : 4383620 9 uncultured_Caudovirales_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage