CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_021218	Helicobacter pylori UM066, complete sequence	1 crisprs	cas3	0	0	1	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_021218_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021218_1

1079191-1079355

Orphan

I-B

Consensus_repeat	Method
CTTTAATAACAACACCTTCAATCAAGGGACTTATAACTTTAATAACAGCAAG	PILER-CR
TTCAATCAAGGGACTTATAACTTTAAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_021218_1

>merge|NC_021218|1|1079191-1079355|PILER-CR,CRISPRCasFinder
TTTAATAAAACAAACTTCAATCAAGGGACTTACAAATTCACTAACAGCGCGAACTTAAACTTCAACAACAGCGCTTTCAATCAAGGGACTTATAACTTTAATGGCAACGCTAGCTTTGATAACGACACCTTCAATCAAGGGACTTATAGCTTTAATACCAGCAAG

>NC_021218|1|1|1079191-1079355|PILER-CR
TTTAATAAAACAAACTTCAATCAAGGGACTTACAAATTCACTAACAGCGCGA	ACTTAAAC
TTCAACAACAGCGCTTTCAATCAAGGGACTTATAACTTTAATGGCAACGCTA	GCTTTGATAA
CGACACCTTCAATCAAGGGACTTATAGCTTTAATACCAGCAAG

>NC_021218|1|1|1079206-1079346|CRISPRCasFinder
TTCAATCAAGGGACTTACAAATTCACT	AACAGCGCGAACTTAAACTTCAACAACAGCGCT
TTCAATCAAGGGACTTATAACTTTAAT	GGCAACGCTAGCTTTGATAACGACACC
TTCAATCAAGGGACTTATAGCTTTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_021218.3\|WP_015642628.1\|1068314_1069859_-\|outer-membrane-beta-barrel-protein-HofG	unknown	unknown	gnl\|CDD\|334957
NC_021218.3\|WP_015642617.1\|1092032_1092692_+\|hypothetical-protein	unknown	unknown	unknown
NC_021218.3\|WP_015642618.1\|1090324_1091236_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NC_021218.3\|WP_015642630.1\|1064626_1066174_+\|Hop-family-adhesin-AlpA	unknown	unknown	gnl\|CDD\|280099
NC_021218.3\|WP_000722440.1\|1091232_1092036_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|223570
NC_021218.3\|WP_000426958.1\|1089766_1090309_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|129173
NC_021218.3\|WP_015642626.1\|1072724_1073156_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223088
NC_021218.3\|WP_015642616.1\|1092695_1093298_+\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	unknown	unknown	gnl\|CDD\|223792
NC_021218.3\|WP_015642620.1\|1087701_1088847_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|272903
NC_021218.3\|WP_015642631.1\|1061779_1063810_+\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223288
NC_021218.3\|WP_015642627.1\|1070106_1072548_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|224544
NC_021218.3\|WP_015642621.1\|1085611_1086715_+\|Hop-family-outer-membrane-protein-HopJ/HopK	unknown	unknown	gnl\|CDD\|280099
NC_021218.3\|WP_015642623.1\|1077348_1078347_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NC_021218.3\|WP_015642632.1\|1060625_1061786_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|223897
NC_021218.3\|WP_172635387.1\|1088815_1089766_+\|zinc-metalloprotease-HtpX	unknown	unknown	gnl\|CDD\|235081
NC_021218.3\|WP_001115888.1\|1086771_1086978_-\|4-oxalocrotonate-tautomerase-family-protein	unknown	unknown	gnl\|CDD\|129125
NC_021218.3\|WP_015642625.1\|1073155_1076413_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NC_021218.3\|WP_015642629.1\|1066195_1067782_+\|Hop-family-adhesin-AlpB	unknown	unknown	gnl\|CDD\|280099
NC_021218.3\|WP_001099598.1\|1087123_1087705_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|273176
NC_021218.3\|WP_015642624.1\|1076511_1077204_-\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414

Protein	Function_ID	Function_description	E-value
NC_021218.3\|WP_015642628.1\|1068314_1069859_-\|outer-membrane-beta-barrel-protein-HofG	gnl\|CDD\|334957	pfam02521, HP_OMP_2, Putative outer membrane protein. This family consists of putative outer membrane proteins from Helicobacter pylori (campylobacter pylori).	8.31958e-179
NC_021218.3\|WP_015642616.1\|1092695_1093298_+\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	gnl\|CDD\|223792	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism].	1.35148e-21
NC_021218.3\|WP_015642618.1\|1090324_1091236_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	5.33566e-76
NC_021218.3\|WP_015642630.1\|1064626_1066174_+\|Hop-family-adhesin-AlpA	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.96826e-54
NC_021218.3\|WP_000722440.1\|1091232_1092036_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|223570	COG0496, SurE, Predicted acid phosphatase [General function prediction only].	7.54077e-127
NC_021218.3\|WP_000426958.1\|1089766_1090309_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|129173	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I. alternate names: Punch (Drosophila),GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	2.96322e-104
NC_021218.3\|WP_015642626.1\|1072724_1073156_-\|hypothetical-protein	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	0.000692041
NC_021218.3\|WP_015642620.1\|1087701_1088847_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|272903	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family. an EGAD loading error caused one member to be called surE, but that's an adjacent gene. MJ11364 is a strong partial match from 50 to 230 aa. [Protein synthesis, tRNA and rRNA base modification].	4.32244e-137
NC_021218.3\|WP_015642631.1\|1061779_1063810_+\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	8.10805e-137
NC_021218.3\|WP_015642627.1\|1070106_1072548_-\|TonB-dependent-receptor	gnl\|CDD\|224544	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism].	3.27042e-34
NC_021218.3\|WP_015642621.1\|1085611_1086715_+\|Hop-family-outer-membrane-protein-HopJ/HopK	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	5.55707e-47
NC_021218.3\|WP_015642623.1\|1077348_1078347_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	6.75759e-159
NC_021218.3\|WP_015642632.1\|1060625_1061786_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	2.06412e-51
NC_021218.3\|WP_172635387.1\|1088815_1089766_+\|zinc-metalloprotease-HtpX	gnl\|CDD\|235081	PRK02870, PRK02870, heat shock protein HtpX; Provisional.	0
NC_021218.3\|WP_001115888.1\|1086771_1086978_-\|4-oxalocrotonate-tautomerase-family-protein	gnl\|CDD\|129125	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function. [Energy metabolism, Other].	4.5194e-26
NC_021218.3\|WP_015642625.1\|1073155_1076413_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NC_021218.3\|WP_015642629.1\|1066195_1067782_+\|Hop-family-adhesin-AlpB	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.08331e-52
NC_021218.3\|WP_001099598.1\|1087123_1087705_+\|recombination-protein-RecR	gnl\|CDD\|273176	TIGR00615, Recombination_protein_RecR, recombination protein RecR. All proteins in this family for which functions are known are involved in the initiation of recombination and recombinational repair. RecF is also required. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	4.16127e-98
NC_021218.3\|WP_015642624.1\|1076511_1077204_-\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	1.84382e-52

>NC_021218.3|WP_015642623.1|1077348_1078347_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MKIFINGFGRIGRCVLRAILERSDTNPNLEVIGINDPANWEILAYLLEHDSAHGLLNKETRYSNHKLIIGSLEIPVFNSIKDLKGVDVIIECSGKFLEPKVLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHSLYQNQAIVSNASCTTNAIAPICAILDKAFGIKEGMLTTIHSYTSDQKLIDLAHPFNKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPSSVIIAPDLTFTLENMVKIMGWYDNEWGYSHRLVDMAQFMYHY
>NC_021218.3|WP_015642624.1|1076511_1077204_-|Bax-inhibitor-1/YccA-family-protein
MALYDRADSHNAYAENSLLHESELVGFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYKWVFFIAEIAALFGLMFSKSKPGLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAIWQALGMTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVVVCSLINLFLGSPMFQVVIAGASAILFSLYIAYDTQNIVKGMYDSPIDAAVELYLDFLNVFISILQIIGIFSDRDK
>NC_021218.3|WP_015642625.1|1073155_1076413_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDISNILLIGSGPIVIGQACEFDYSGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIATIIEKEKIDAILPTMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAYNELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESLLGWKEYEMEVIRDNKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFAILREIGVDTGGSNVQFAIHPETLRMVVIEMNPRVSRSSALASKATGFPIAKVATMLAVGFSLDEIQNDITNTPASFEPSLDYIMVKIPRFAFEKFAGVSSTLGTSMKSIGEVMAIGGNFLEALQKALCSLENNWLGFESLSKDLEMIKKEIRRPNFKRLLYIADAFRLGVCVDEVFELCQIDRWFLSQIQKLVKAEESINSSVLTDAKKLRGLKNLGFSDARIAAKIKENENLEVSPFEVELARMNLQIVPNFEEVDTCAAEFLSLTPYLYSTYAPNPLFPIENKQEKQEKKILIIGSGPNRIGQGIEFDYCCVHASFALKDLNIKSVMLNCNPETVSTDYDTSDTLYFEPIHFECVKSIIQRECVDGIIVHFGGQTPLKLAKDLAKMQAPIIGTPFKVIDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQILENIEELHHYLESVTHALEVSPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEAGIHSGDSACFIPSTLSPEILDEIERVSAKIALHLGVVGLLNIQFAVHHNSLYLIEVNPRASRTVPFLSKALGVPLAKVATRVMVLKDLKEALKFYDKKNIVGYSKGVYKPKMPHFVALKEAVFPFNKLYGSDLILGPEMKSTGEVMGIARSLGLAFFKAQTACFNPIKNKGLIFVSIKDKDKEEACVLMKRLVQLGFELCATEGTHKALEKAGVESLKVLKISEGRPNVMDLMMNGEISMAINTSDHKSQDDAKLIRASVLKNHVSYFTTLSAIEVLILALEESSKEDELLALQDYLV
>NC_021218.3|WP_015642626.1|1072724_1073156_-|hypothetical-protein
MALVYLAQSDTTIGLLSKDSEKLNALKNRPKNQSVLIESADFTTLKSLVHVPNAFKNFIRRSAKTTFIYPNSKAVRVVRGRHGDFLKRFKTLYSTSANLTQCAYDKEIASNLADVIVSDERGLFESSSSKMFRLYKDKKVRVR
>NC_021218.3|WP_015642627.1|1070106_1072548_-|TonB-dependent-receptor
MNDKRFRKYCSFSVVLTLLGMFELEAKEEEKEERKTERKKDQKKNAQHTLGKVTTQAAKIFNYNNQTTISSKELERRQANQISDMFRRNPNINVGGGAVIAQKIYVRGIEDRLARVTVDGAAQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMALIGAIKMETRSASDFIPKGKDYAISGAVTFLTNFGDRETVMGAYRNNHFDVLLYYTHQNIFYYRDGDNTTKDLFRPKADNKVTGSPSEQNNVMAKINGYLSDRDTLNLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFPNEKNPSDCLFENDASLFKTYSVNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVQIDPLFRPNDIATTIPFTPNPKLGEENECVAQGGIYDAIKQTCSITFKSLGGGSVVANKNLFIINSGFNANVIHTIDHKNDNLFEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVTGPNDPNMNGRCQRNGATANVVGVYAQANYTLHPMVTLGAGTRYDVYTLVDKDWQLHITQGFSPSAALNVSPLENLNFRLSYAYVTRGPMPGGLVWMRQDNLRYNRNLKPEIGQNVEFNTEYSSKYFDFRAAGFVQLISNYINQFSSTLFVTNLPAQDIIYVPGYEVSGTAKYNGFSLGLSVARSWPSLKGRLIADVYELAATTGNVFILTASYTIPRTGLSITWLSRFVTDLSYCSYSPYRNGPTDIDRRPSNCPKTPGIFYVHKPGYGVSSFFVTYKPTYKKLKGLSLNAVFNNVFNQQYIDQASPVMSPDEPNQDKYARGMAEPGFNARFEISYKF
>NC_021218.3|WP_015642628.1|1068314_1069859_-|outer-membrane-beta-barrel-protein-HofG
MRQEKYFLTSSLSLLSFLLCPAEAFDYRFSGRVENFSKIGFNNSQLNTKKGIYPTESFIDIVTLAQVKVNLLPKGTENHRLSVSLGGAIAAIPYDKTKYDINQANGKIFGSIVENFIGGYHGYFFNKYLGPAYAGTSQSASYHARPYVVDTAFLKYDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQRLRFWWWSSFGRGLAFNSWIYEFFATVPYLKKGGNPSNSNDFINYGWHGITTTYSYKGLDAQFFYYFAPKTYNAPGFKLVYDTNRNFENVGFRSQSMIMTTFPLYYRGWYNPETKTYSLEDSTPHGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGNNTSYISNEISVTTRHAGMIGYDFWDNTAYDGLADAITNANTFTFYTSVGGIHKRFAWHVFGRISHANKNALGQLGRANEYSLQFNASYAFTESVFLNFRITYYGARINKGYQVGYFGAPKFNNPDGDFSANYQDRSYMMTNLTLKF
>NC_021218.3|WP_015642629.1|1066195_1067782_+|Hop-family-adhesin-AlpB
MKQNLKPFTMIKENLMTQSQKVRFLAPLSLALSLSFNQVGAEEDGGFMTFGYELGQVVQQVKNPGKIKAEELAGLLNSTTTNNTNINIAGTGGNVAGTLGNLFMNQLGNLIDLYPTLNTSNIHQCGTTSTTGATTATTGSTSSSSCFQGNLSLYNEMVSSIKTLSQDLKNNIFQGNNNTTSANLSNQLSELNTASVYLTYMNSFLNANNQAGGIFQNNTSQAYGNGVTAQQIAYVLKQASVTMGPSGNGGAAGAFLDAALAQHVFNSANAGNDLSAKEFTSLVQNIVDTSQNALTLANNANISNSTGYQVGYGGNIDQVRSTQLLNNTTNTLAKVTALNNELKANPWLGNFAAGNSSQVNAFNGFITKIGYKQFFGENKNVGLRYYGFFSYNGAGVGNGPTYNQVNLLTYGVGTDVLYNVFSRSFGSRSLNAGFFGGIQLAGDTYISTLRNSPQLANRPTATKFQFLFDVGLRMNFGILKKDLKSHNQHSIEIGVQVPTIYNTYYKAGGAEVKYYRPYSVYWVYGYAF
>NC_021218.3|WP_015642630.1|1064626_1066174_+|Hop-family-adhesin-AlpA
MIKKNRTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGTKRDELERELNAGVTNNILNNNTGGNVAGALSNAFSQYLYSLLGAYPEKLNGNDVSANALLGGAVGSGTCAAAGTAGGNSLTTQSACTAAGYYWLPSLSNRVLSTIGSQTNYGTNTNFPNMQQQLTYLNAANVFFNAMNKALETKNGTNSGATGQNGQTYSQQAIQYLQEQQNILNNAANLLKQDELLLEAFNSAVAANIGNKEFNSAVFTGLVQGIIDQSQSVYNELSKNPISGSAFNNATNSQLTNQANAVQGRANQLPNALYNAQVTLDKINALNNQVRSMPYLPQFRAGNSRATNILNGFYTKVGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYNIFSRSYQNRSVDMGFFSGIQLAGETFQSTLRDDPNVKLHGKINNTHFQFLFDFGMRMNFGKLDGKSNRHNQHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF
>NC_021218.3|WP_015642631.1|1061779_1063810_+|ATP-dependent-helicase
MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNEMIARVAKYSKSSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKNALTDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSHKNPEHTPYAAFYENILDEFENTKKKHNYIDYNDLLLLFKQAMLETPSPYKEVLCDEFQDTNPLQESILDAINPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKNAQVFTLTKNYRSSKEILDLANQVIQHNERIYPKNLEVVKSGHFNKPALLNYNDNIAQCQDIAKRIVMRKNFKEVAVIFRNNASADQLEAALRSHNVPSKRKGSASFFESKEVALALDICALIFNPKDIMAAIHVLSYISDIGSNTAKDIHEALMLLGNGDLKLALTHPNKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHPKISLNGAKMLSDFFILYTKAPTHSPSALIKHILESVFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKDVYIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEHKPSVFLYEAGLLKPDLK
>NC_021218.3|WP_015642632.1|1060625_1061786_+|class-I-SAM-dependent-methyltransferase
MEGFLHQLDIKTLGQVFTPKNIVDFMLTLKHNHGSVLEPSAGDGSFLKRLKKAVGIEIDPKICPKNALCMDFFDYPLENQFDTIIGNPPYVKHKDIAPSTKEKLHYSLFDERSNLYLFFIEKAIKHLKPEGELIFITPRDFLKSTSSVKLNELIYKEGTITHFFELGDQKVFPNAMPNCVIFRFCKGNFSRITNGCLQFLCKKGILYFLNQSYTQKLSEVFKVKVGAVSGCDKIFKNEKYGNLEFVTSITKRTNVLEKMVFVNKPNDYLLQHKDSLMQRKIKKFNEANWFKWGRMHHISPKKRIYVNTKTRQKNPFFIHQCPNYDGSILALFPYNQNLDLQNLCDKLNAINWQELGFVCDGRFLFSQRSLENALLPKDFLNEDKTC
>NC_021218.3|WP_015642621.1|1085611_1086715_+|Hop-family-outer-membrane-protein-HopJ/HopK
MQKTLFSLSLFLPLSLSFCIAEENGAYASVGFEYSISHAIQHNNPFLNQERIQIISDAQNKIDKINQVKNEITSMQNTFAYINNNLKNNSKPSATEMQAEKYYLQSTFQNIEKIVMLSGGVASNPQLVQALEKIQEPTTNPLEFEENLKNLEVQFAQSQNRMLSSLSSQIAQISNSLNALDPSSYSKNISNMYGVALNVGYKHFFTKKKNQGFRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNFIDNAQKHSSVGFYAGFALAGSSWVGSGLSMWVSETDFINNYLIGYQAKMHTSFFQIPLNFGVRVNVDRHNGFEMGLKIPLAVNSFYETHGKGLNTSLFFKRLVVFNVSYVYSF
>NC_021218.3|WP_001115888.1|1086771_1086978_-|4-oxalocrotonate-tautomerase-family-protein
MPFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASVVVIIDEVDSNNYGLGGESVHHLRQKN
>NC_021218.3|WP_001099598.1|1087123_1087705_+|recombination-protein-RecR
MNTYKNSLNHFLNLVDCLEKIPNVGKKSAFKMAYHLGLENPYLALKITHALENALENLKTCASCNALSESEVCEICSDESRQNSQLCMVLHPRDVFILEDLKDFLGRYYVLNSIEEVDFNALEKRLIEENIKEIIFAFPPTLANDSLMLYIEDKLQHFHLTFTKIAQGVPTGVNFENIDSVSLSRAFNSRIKA
>NC_021218.3|WP_015642620.1|1087701_1088847_+|tRNA-pseudouridine(13)-synthase-TruD
MNLNFMPLLHAYNYASIDFHFNPSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALTTQFISIPKKYAPLLEKNTHNLQERNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTEQVLEQIAQFGMPNYFGPQRFGKFNNNHQEGLKILQNQTKFAHQKLNAFLISSYQSYLFNSLLSKRLEISKIISAFSVKENLEFFKQKNLNINPNTLKALKNQAHPFKILEGDVMCHYPYGKFFDALELEKESERFLKKEAVPTGLLDGKKALYAKNLSLEIEKEFQHNLLNSHAKTLGSRRFFWVFVENITSQYVKEKAQFELGFYLPKGSYASALLKEIKHEKGENNDEF
>NC_021218.3|WP_172635387.1|1088815_1089766_+|zinc-metalloprotease-HtpX
MRKEKIMTNFEKIIAQNKLKTNAVLATYCVIFAFIGLLVDVIRINANDLGTALFKLMTFQIFPTITIIMFLVAFVIIVVCIQNFSSIMLSGDEYKLIDSSKVLSSKENQIHRLLLELLEEAKLHFEPKLYIIKAPYMNAFASGWNESNSLIALTSALIERLDRDELKAVIAHELSHIRHNDIRLTMCVGILSNIMLLVANFSVYFFMGNRKNSGANLARMILLVLQIILPFLTLLLQMYLSRTREYMADSGAAFLMHDNKPMIRALQKISNDYKENDYKDTDKNSTRSAAYLFSTEMFSTHPSIKNRIQSLSRRVI
>NC_021218.3|WP_000426958.1|1089766_1090309_+|GTP-cyclohydrolase-I-FolE
MENFFNQFFENIGEDKNREGLKETPKRVQELWKFLYKGYKEDPKVALKSAYFQGVCDEMIVAQNIEFYSTCEHHLLPFLGSISLGYIPKEKIVGISAIAKLIEIYSRRLQIQERLTTQIAETFDEIIEPRGVIVVCEAKHLCMSMQGVQKQNAIIKTSVLKGLFKKDPKTRAEFIQLLKS
>NC_021218.3|WP_015642618.1|1090324_1091236_+|polyprenyl-synthetase-family-protein
MNNPNLSFYHNECERFESFLKNHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGKKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELVKILSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELLKWLQAFGLKTGLCFQVLDDIIDVTQDEEESGKTTHLDSTKNSFVNLLGLEKASGYAQALKTEVLNDLNLLKPAYPLLQENLNALLNTLFKGKT
>NC_021218.3|WP_000722440.1|1091232_1092036_+|5'/3'-nucleotidase-SurE
MKKILLTNDDGYHAKGIKALEQALEEMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYRIDDGTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQILSNKNKNTPLNFDLAQKIIQDLVQNIFTNGYPLKGRKLLNVNVPNCSLQEYKGECITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLEWQKRENEDRLSDFDAIASNHVSITPLNLDLTSYDDLKSLESWHKGMLK
>NC_021218.3|WP_015642617.1|1092032_1092692_+|hypothetical-protein
MSKNQCLAFLGLIVGVLFFFSACQHRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSYYINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYARIVRNISAVPFYQYNYQLIDQVNKPCYFLGGQFYCSQTPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRE
>NC_021218.3|WP_015642616.1|1092695_1093298_+|6-pyruvoyl-tetrahydropterin-synthase-family-protein
MVIRRLYQFCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDSANMALDFGLMQQEIQVFIESFDHAHHFWDKESDEFQRFIENHCVRYVKCSFNLSAESYALMFLYYLTRILQKSVFSNNEGELKISSVRVHETKNGYAESFLKDLENPHFKSLVHQNCVSFSQGIQNLWHDKDFFNKIISDEKQCFFHAKPLHQIP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1555899 : 1566776

Bacillus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015642258.1\|1555899_1558581_-	DNA polymerase I	A0A142F1Q9	Bacillus_phage	1.4e-46	28.8
WP_015642257.1\|1558647_1559823_-	restriction endonuclease subunit S	A0A2H4J2Z3	uncultured_Caudovirales_phage	1.6e-23	50.4
WP_015642256.1\|1559819_1561859_-	N-6 DNA methylase	A0A2H4JBT5	uncultured_Caudovirales_phage	3.8e-214	58.8
WP_015642255.1\|1561891_1562467_-	ComF family protein	NA	NA	NA	NA
WP_015642254.1\|1562454_1563030_-	dTMP kinase	R4TMK1	Halovirus	1.0e-10	41.9
WP_015642253.1\|1563031_1563505_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.8e-27	44.2
WP_000780123.1\|1563504_1564068_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_015642252.1\|1564077_1564734_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA
WP_015642251.1\|1564730_1566776_-	DNA helicase UvrD	A7KV33	Bacillus_phage	2.2e-92	35.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage