CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_021237	Pseudomonas protegens CHA0, complete genome	7 crisprs	DinG,csa3,cas3,PD-DExK,WYL,DEDDh	0	0	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_021237_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021237_1

1002964-1003117

Orphan

Consensus_repeat	Method
GTAGGAGCCGGCTTGCCGGCGAAGAGGCCCTTGAGCCTTGCGCTGTTCTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021237_1

>merge|NC_021237|1|1002964-1003117|CRISPRCasFinder
GTAGGAGCCGGCTTGCCGGCGAAGAGGCCCTTGAGCCTTGCGCTGTTCTGAAGGGCGCCTTCGCTGGCAAGCCAGCTCCTACGGAGGGGGTAGCAGGATTGGTGTAGGAGCCGGCTTGCCGGCGAAGAGGCCCTTGAGCCTTGCGCCGTTCTGA

>NC_021237|1|1|1002964-1003117|CRISPRCasFinder
GTAGGAGCCGGCTTGCCGGCGAAGAGGCCCTTGAGCCTTGCGCTGTTCTGA	AGGGCGCCTTCGCTGGCAAGCCAGCTCCTACGGAGGGGGTAGCAGGATTGGT
GTAGGAGCCGGCTTGCCGGCGAAGAGGCCCTTGAGCCTTGCGCCGTTCTGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_021237.1\|WP_015634128.1\|990829_992860_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223910
NC_021237.1\|WP_015634133.1\|1001397_1002939_+\|alkaline-phosphatase-D-family-protein	unknown	unknown	gnl\|CDD\|226070
NC_021237.1\|WP_015634135.1\|1005892_1008178_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|227115
NC_021237.1\|WP_015634138.1\|1011830_1012988_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
NC_021237.1\|WP_011059225.1\|1012984_1013638_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224095
NC_021237.1\|WP_015634141.1\|1015635_1017219_+\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NC_021237.1\|WP_015634132.1\|999319_1001065_+\|PTS-fructose-like-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|236740
NC_021237.1\|WP_011059227.1\|1014568_1015285_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224095
NC_021237.1\|WP_015634131.1\|995505_998367_+\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NC_021237.1\|WP_015634136.1\|1009069_1009831_+\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NC_021237.1\|WP_015634139.1\|1013650_1014544_-\|glycine-betaine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270329
NC_021237.1\|WP_015634137.1\|1009988_1011152_-\|type-III-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|143482
NC_021237.1\|WP_041751951.1\|1003204_1005736_-\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|223446
NC_021237.1\|WP_011059214.1\|994208_995204_-\|catabolite-repressor/activator	unknown	unknown	gnl\|CDD\|236897
NC_021237.1\|WP_015634130.1\|993413_994205_-\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|223162
NC_021237.1\|WP_015634126.1\|989190_989751_+\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	unknown	unknown	gnl\|CDD\|236984
NC_021237.1\|WP_011059216.1\|998366_999308_+\|1-phosphofructokinase	unknown	unknown	gnl\|CDD\|274804
NC_021237.1\|WP_011059221.1\|1008385_1009066_+\|Fe2+-dependent-dioxygenase	unknown	unknown	gnl\|CDD\|235483
NC_021237.1\|WP_015634127.1\|989747_990584_+\|regulatory-signaling-modulator-protein-AmpE	unknown	unknown	gnl\|CDD\|226248
NC_021237.1\|WP_015634129.1\|993056_993428_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_021237.1\|WP_015634128.1\|990829_992860_+\|HAMP-domain-containing-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.1148e-64
NC_021237.1\|WP_015634133.1\|1001397_1002939_+\|alkaline-phosphatase-D-family-protein	gnl\|CDD\|226070	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism].	0
NC_021237.1\|WP_015634138.1\|1011830_1012988_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	3.70365e-157
NC_021237.1\|WP_011059225.1\|1012984_1013638_-\|ABC-transporter-permease	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	4.80393e-71
NC_021237.1\|WP_015634141.1\|1015635_1017219_+\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NC_021237.1\|WP_015634132.1\|999319_1001065_+\|PTS-fructose-like-transporter-subunit-IIB	gnl\|CDD\|236740	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional.	0
NC_021237.1\|WP_011059227.1\|1014568_1015285_-\|ABC-transporter-permease	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	4.25071e-62
NC_021237.1\|WP_015634131.1\|995505_998367_+\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NC_021237.1\|WP_015634136.1\|1009069_1009831_+\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	2.24223e-26
NC_021237.1\|WP_015634139.1\|1013650_1014544_-\|glycine-betaine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270329	cd13611, PBP2_YehZ, Substrate-binding domain YehZ of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein YehZ of Clostridium sticklandii is predicted to be involved in uptake of compatible solutes such as choline, L-proline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. YehZ belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	9.45042e-131
NC_021237.1\|WP_015634137.1\|1009988_1011152_-\|type-III-PLP-dependent-enzyme	gnl\|CDD\|143482	cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this subfamily are proteins with homology to ODC but do not possess any catalytic activity, the Antizyme inhibitor (AZI) and ODC-paralogue (ODC-p). AZI binds to the regulatory protein Antizyme with a higher affinity than ODC and prevents ODC degradation. ODC-p is a novel ODC-like protein, present only in mammals, that is specifically exressed in the brain and testes. ODC-p may function as a tissue-specific antizyme inhibitory protein.	9.37742e-171
NC_021237.1\|WP_041751951.1\|1003204_1005736_-\|PepSY-domain-containing-protein	gnl\|CDD\|223446	COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism].	5.85722e-127
NC_021237.1\|WP_011059214.1\|994208_995204_-\|catabolite-repressor/activator	gnl\|CDD\|236897	PRK11303, PRK11303, catabolite repressor/activator.	0
NC_021237.1\|WP_015634130.1\|993413_994205_-\|TatD-family-hydrolase	gnl\|CDD\|223162	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair].	1.15863e-100
NC_021237.1\|WP_015634126.1\|989190_989751_+\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	gnl\|CDD\|236984	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD.	7.84801e-130
NC_021237.1\|WP_011059216.1\|998366_999308_+\|1-phosphofructokinase	gnl\|CDD\|274804	TIGR03828, pfkB, 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).	1.16447e-126
NC_021237.1\|WP_011059221.1\|1008385_1009066_+\|Fe2+-dependent-dioxygenase	gnl\|CDD\|235483	PRK05467, PRK05467, Fe(II)-dependent oxygenase superfamily protein; Provisional.	3.51373e-155
NC_021237.1\|WP_015634127.1\|989747_990584_+\|regulatory-signaling-modulator-protein-AmpE	gnl\|CDD\|226248	COG3725, AmpE, Membrane protein required for beta-lactamase induction [Defense mechanisms].	2.95169e-56
NC_021237.1\|WP_015634135.1\|1005892_1008178_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|227115	COG4774, Fiu, Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism].	0

>NC_021237.1|WP_015634133.1|1001397_1002939_+|alkaline-phosphatase-D-family-protein
MSEFNLGRRRIMQIAGAGLLLPSLAPAVIASVKDRPQLTDGVQSGDLLGDKAMIWSRSDRPARMVVEWDTRSMFSNPRRSVSPLADARTDFTARVELTGLPANQAIFYRVTFEDAQSGVASEPWFGHLRSAPSQRRDIRFVWSGDTVGQGFGINPDIGGMRIYEAMRLRLPDFFIHSGDTIYADGPVPAQLTVEDGRIWRNLTTEAKSKVAETLDEYRGNYRYNLMDENLRRFNAEVPQIWQWDDHEVVNNWSPSKQLDERYVVKDIQTLVGRARQAWLEYSPMRRQSADGGGRIYRKLSYGPLLDVFVLDMRSYRGPNDDNLGGEKPFLGREQLDWLKRELKDSSAQWKVVAADMPIGLGVPDGEVSPGVARWEAIANGDPGPAQGRELEIAELLAYLRKHQVRNHVWLTADVHYCAAHHYHPDRAAFQDFEPFWEFVAGPLNAGSFGPNVLDKTFGPEVVFQKAPPAQNTSPFAGFQFFGEVQIDGQTAELKVILRDLDGVAVYEHNLQPA
>NC_021237.1|WP_015634132.1|999319_1001065_+|PTS-fructose-like-transporter-subunit-IIB
MKLAIVTACPNGMVTSVLCARLLDAAAQRQGWSTSVEVHDEAHPERQLSAATIEAAEWVLVVSTGPVDMSRFVGKRVYRSSPSQALQDVDAVLRRGAEEAQVHVATEASAEPVLETGKRAPRLVAITACPTGVAHTFMAAEALQQTAKRLGYDLQVETQGSVGARNPLSAQAIAEADVVLLAADIEVPTERFAGKRIYRCGTGVALKQSEATLNKALAEGRLESSVAGAQAPAKQEKTGVYKHLLTGVSFMLPMVVAGGLMIALSFVFGITAFKEEGTLAAALMQIGGETAFKLMVPLLAGYIAYSIADRPGLAPGMIGGMLASTLGAGFIGGIVAGFLAGYAAKAINKYARLPQSLEALKPILIIPLLASLFTGLVMIYVVGKPVAGMLEALTHFLDSMGTTNAILLGVLLGGMMCVDLGGPINKAAYAFSVGLLASQSYAPMAATMAAGMVPPIGLGIATFIARRKFAQTEREAGKAALVLGLCFISEGAIPFAAKDPLRVIPASIAGGALTGALSMYFGCKLMAPHGGLFVMLIPNAINHALLYLLAIVAGSLLTAVVYALVKRPETVELALEPAKAA
>NC_021237.1|WP_011059216.1|998366_999308_+|1-phosphofructokinase
MAKILTLTLNPALDLTVQLARLDTGQVNRSDAMYTHAAGKGVNVAQVLADLGHQLTVSGFLGENNPQAFDALFAQRGFVDAFIRVPGDTRSNIKLAESDGRITDINGPGPEVSEAAQQALLERLEQIAPGHDAVVVAGSLPRGVSPEWFQALLLRLKNLGLKVALDTSGAALRAGLAAGPWLVKPNTEELADALGSPVVSVAGQAEAARQLHAQGVEHVVISHGAEGVNWFSAAPSLQALPPKVRVVSTVGAGDSLLAGMLHGLLSAQPFEQTLRTATAIAAMAVTQIGFGISDRVQLARLEQGVRVHPLLEQ
>NC_021237.1|WP_015634131.1|995505_998367_+|phosphoenolpyruvate--protein-phosphotransferase
MLELTVEQISMGQSAVDKSAALHLLADKLVADGLVAEGYLAGLQAREAQGSTFLGQGIAIPHGTPETRDQVFATGVRLLQFPDGVDWGDGQIVYLAIGIAAKSDEHLRLLQLLTRALGETDLGQALRRASSPQALLKLLQGAPQELALDAQMIGLGVAAEDFEELVWRGARLLRQAECVSNGFAAVLQQVEALPLGDGLWWLHSEQTVLRPGLAFVTPDKPIRYLGQPLSGLFCLASLGEAHQALLERLCALLIEGRGQELGRATSSRAVLEVLGGELPADWPSARIALANAHGLHARPAKVLAQLAKNFEGEIRIRIVDGKDSAVSVKSLSKLLSLGARRGQVLELIAEPSIAADALPALLAAIEEGLGEEVEPLPAVSTPRQAPQEVVEPLSAPASGSLIQAIAAAPGIAIGPAHIQVQQSIDYPLRGESTAIERQRLQQALAEVREDIQGLIQRSQAKAIREIFITHQEMLDDPELSDEVDTRLKQGESAEAAWMTVIESAAKQQEALQDALLAERAADLRDIGRRVLAQLCGIETPAEPDQPYILVMDEVGPSDVARLDPTRVAGILTARGGATAHSAIVARALGIPALVGAGASVLLIKSGTSLLLDGQRGRLHVDADSTTLQRAAEERDNREQRLKAAAEQRHQLAHTADGHAVEVFANIGESAGVAAAVENGAEGIGLLRTELIFMAHPQAPDEATQEAEYRRVLDGLAGRPLVVRTLDVGGDKPLPYWPIAKEENPFLGVRGIRLTLQRPLIMEAQLRALLRSADNRPLRIMFPMVGSVEEWRQARDMTERLRREIPVADLQLGIMIEVPSAALLAPVLAKEVDFFSIGTNDLTQYTLAIDRGHPTLSAQADGLHPAVLQLIDITVRAAHAHGKWVGVCGELAADPLAVPVLVGLGVDELSVSGRSIAEVKARIRELRLAQAQTLAQQALAVGSANEVRALVEAM
>NC_021237.1|WP_011059214.1|994208_995204_-|catabolite-repressor/activator
MKLSDIARLAGVSVTTASYVINGKAEQQRISNATVERVRAVVEEHGFTPNPQAAGLRSRHTRTLGFILPDLENPSYARIAKLLEQGARARGYQLLIASSDDAPDSERQLLQLFRARRCDALFVASCLPPEDDSYQQLQAQGLPIIAIDRVMPPELFCSVISDDLQASLHLTQSLLEPEPKQIVLIGARPELSISQERAAGFRQALEGFGGEVLIEHGEAFSRDCGRQLMEELLQRLGHLPDALVTTSYVLLQGVFDALHDFPLKSRPLRLGTFGDTQLLDFLPLPVNAMAQQHQLIAEKALQLALAAIEEAHYQPGVQAIARTFKQRIQQG
>NC_021237.1|WP_015634130.1|993413_994205_-|TatD-family-hydrolase
MELIDSHTHLDFADFDADRGALLADSRALGVSRMVVLGVYQANWQRLWDLVQSDSQLYAAFGLHPVYLDDHRPEHIQQLGDWLTRLAGHPQVCAVGEIGLDYFLAHLDRERQQALFEAQLQLAADFQLPALLHVRRSHAAVIASLKHFKLKRGGIIHAFAGSREEAREYLKLGFKLGLGGAATWPQALRLRKVIAELPLHALVLETDSPDMAPAMFPGQRNSPQHLPAICAALAQIIGITPEQLASASTRNACELFGWPSAGL
>NC_021237.1|WP_015634129.1|993056_993428_+|hypothetical-protein
MTATSGIQGRCAHCQTLLELEPWQLNAMALQEAFNCNHCHKPLKLSCPEQIKRLRSLGSLATLRATMIVLCAMVILVTLVLEWVGLVSLAQQLSVSALMLVSYLLVMMAARRRQRRPLQLQAG
>NC_021237.1|WP_015634128.1|990829_992860_+|HAMP-domain-containing-protein
MKSLLYPAVALMNRLSFGMKFSLISVLFFLPMLVTNFYLVRDSYREFQGTRVELQSLDLLGSSLALRRDLETLNNLVQINASLGQSGKAGDLEGKIVALEKSVLERLQALQAVTTDPQQVEVFNAKRDELIAAFKTQQVESSLLNKSGLIGKLLGSAQLFSQIIASQSGLSRDGQGDIRQLSELITSVTPQVTQILGEGRAMGAYSLGQGFLNSSSSTRFDELLVQIEKLQAEYGLKLQDALGSSRAAHDALDTLATTSKGSLKQASELFEEQVVMADTLDAPWQAFYDQVSGLMAQTYQLNEGTLKFLDVELQKRLEQNRRHMVLLVAALALVFLSIVYLYGGFYASTRTTLRRLGAMMDKVAAGDMTVSFTAHSRDELGELGSVFNGTVLKIHDLIERVGHTVSEVERQAGQVQSVSAQSNQAVAGQRTQIEQVATAMNQMSATSQEVARSAAAAVSSAHSVNDETISGRGLVESQQGSIARLASEIDQSVLVINQLASDSQSISRVLEVIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAKRTQQSTEEIEDMIGKLHGGVSAAVKAMGSSHAMANGTVDQSEKVQQALENILGAVGMIVDQNQQIAAAVEQQTAVAHDIDQNIVEINRAGERTAEGAHQTEDASRQLSAQVVQLKQLIGAFRV
>NC_021237.1|WP_015634127.1|989747_990584_+|regulatory-signaling-modulator-protein-AmpE
MSFLVLLLAVWIEKFSALRQRVQRDDWWLGELARLESSPRMAGHPWWLLIVMVLLPVALLGLLLLVLEPIAYGLLALPVHLLVVIYALGRGDLLGELGPFRDAWRREDLQAAAHVAERDLGICAENGEQLLERVQGHLLWQAFQSFFAVIFWYFLLGPVAALSYRLLALAAEHGKNPALVERAGQLRHAFDWLPVRLLAASFALVGNFVAVGRVMLHELLNWHIGAAQLVEKVGLVAAEIPPPEVGPEGINSLDRIWELLLRAAVLWYAGFALWAVLA
>NC_021237.1|WP_015634126.1|989190_989751_+|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD
MRLDPATGWCHGVRHCPSPNFNERPAGEISLLVIHNISLPPGQFGTGKVQELFQNRLDVTEHPYFAGIADLRVSAHFLIERDGAVTQFVSCLDRAWHAGVSSFQGRETCNDFSLGIELEGTDDQPFSDAQYHSLISLSRQLRRAFSDITPQRICGHSDIAPGRKTDPGPGFDWARFRAALEKGEGQ
>NC_021237.1|WP_041751951.1|1003204_1005736_-|PepSY-domain-containing-protein
MLKKTLFQLHWFFGISAGLILALMGITGATVSFQDEILRALNPSVLQVDKLPAGVLPPAELVEKIQAAEGKTVSMLWVETDSGNAARVFFTPPPGERRGQMRYFDPYTGEFMGDAVGQDFFGFMLQLHRFLAIGDTGRQITGACTLILIFFCLSGLYLRWPRQVGNWRVWLTLDWAKKGRGFNWDLHAVFGTWCLLFYLLFALTGLYWSYDWYREGLTKLLSDAPHSERQRGGRGGPPPKGPAPVTDYNAMWSSIYSAAGKDLNAYNIRMPAVAGQPATVFYLLKSSPHERALNQLTLDPATGVISRHDRYADKSLKSQLLTSVYALHVGSYFGLVGRILLTLASLTMPLFFVTGWLLYLDRRRKKRQIKQARQGLESTAPDGSAWLIGFASQSGFAEQLAWQTAGQLQAAGVATKVQPLSNLSEQDLRDAQRALFVVSTFGDGEAPDSARGFERKLLGRELSLQGLQYAVLGLGDRQYQHFCGFARRLHDWLSNQGGSTLFAPIEVDSGDSYALRHWQQQLGQLTGHAPVDLWQAPAFDNWTLKSRTLLNPDSSGSGVYLLQLLAPSASSWLAGDLVEVMPRNSSWMVEYFLDGLGLSGEARVQLDGLEESLEQALGSRQLPENRTHLVGLHAQALVDALVPLSMREYSIASIAADGCLELLVRQERHADGSLGIGSGWLTEHAAVGSSISLRVRRNSGFHLPAEPCPLILLGNGTGLAGLRSLLKARIAEGQQRNWLIFGERNAEHDFYFKDELQEWRTRGDLSRLDLAFSRDQAEKIYVQDRLRQAADELKKWLDDGAALYICGSLQGMASGVDQVLIEVLGADHVERLIEQGRYRRDVY
>NC_021237.1|WP_015634135.1|1005892_1008178_-|TonB-dependent-siderophore-receptor
MSRQQPPSAVSSPRLLASAIGVAITAGSAGHMVQAAEETQQKTSGKAIALEATSITGEAQDNTSYQVEKASSQKYTAPLVDTPRSVTVIPQQVLKDTAATSLQDALRTVPGITFGAGEGGNPQGDRPFIRGFDAQGDTYLDGVRDTGGQSREIFDIESVEVSKGPNSSFGGRGSAGGSLNLVSKQPKQQDFLNGGFTYGSDQTRRYTLDVNRQFLEGAAFRLNLMSHEQNVAGRDAVNYDRWGVAPSLTFGMGTPTRVNVSYYHMESDDLPDSGIPYGYSSNGAKAAHIHDKPTDGGDSNNFYGLKDRDFRKTRADISTFSVEHDLNDNMTLKNTLRHGNTGQDYILTQPDDSQHNVNQFGTVWRRANSRVSTTETTTNQTDLFGEFHALGFKNNYSTGLEFTGEETRVSSYTVTPNSNPTCTVGKVGNSGGSCTSLGNPTPDDAWTGSAVRNYYGTNTKATTRAAYAFDTIELDPKWLLNLGVRYDTFDTVANTNAATGRSKLKSDSQFWNWQAGLVWKPAENGSIYASYATSANPAGGVLDGAADNPLSAGLATSDLKPEETVNYELGTKWDVFNNRLSLTGAVFRTEKKNTRILVDSLTYQNAGESRVDGIELGASGKITDKWQVFAGYSYLKSELVDAGLNGRNGVVSAGSNKGNQMPNTPKNTFSLWSTYDITSKLTVGGGAFYVDEVYGDAANTVYVPSYTRYDAMASYKLTKNVDLQLNVQNLTDKTYYDKAYAAHFANQAAGRTALMSANFHF
>NC_021237.1|WP_011059221.1|1008385_1009066_+|Fe2+-dependent-dioxygenase
MLLHIPGVFTRDEVGRIREALEQADWADGKITAGYQSAKAKHNLQLPEGHPLAQEIGAAMLDRLWQNPLFMSAALPHKVFPPLINCYTAGGSFDFHIDNAVRQPKGSPERVRTDLSSTLFFSDPEDYEGGELEIQDTFGLQRVKLPAGDMVLYPGTSLHKVNPVTRGARYASFFWTQSLVREDSQRALLFEMDGAIQELTRDVPDHPSLVRLTGTYHNLLRRWVEV
>NC_021237.1|WP_015634136.1|1009069_1009831_+|sel1-repeat-family-protein
MTFQLRREELLDGAQLSAMLEESPARAAQAVLAAASEGLLDAQALLGQILLDGRGIQQDQPLAVRWFEIAAQRGHLMARNMLGRCHEHGWGCPADAARAAGHYRLAAEAGLDWGLYNYANLLATGRGVVQNHALALACYRRAADLGHAKSMNLLGRYLEEGLVCQADLEAARDWYRRSAEGGDFRGQFSHAAVLADAGRIDEAVEWLKRALAGGNLNFLRVACAALLNATHPEIRELAQAYQRRAVELGDAPQ
>NC_021237.1|WP_015634137.1|1009988_1011152_-|type-III-PLP-dependent-enzyme
MSINVEDYFARETFQKMKSFADQQETPFVVIDTQMISQAYDDLRAGFEFAKVYYAVKANPAVEIIDLLHEKGSSFDIASIYELDKVLGRGVNPANISYGNTIKKSKDIRYFYDKGVRLYATDSEADLRNIAKAAPGSKVYVRILTEGSTTADWPLSRKFGCQTDMAMDLLILARDLGLVPYGVSFHVGSQQRDISVWDAAIAKVKVIFERLKEEDGIELKLINMGGGFPANYITRTNSLETYAEEIIRFLKEDFGDDLPEIILEPGRSLIANAGILVSEVVLVARKSRTAVERWVYTDVGKFSGLIETMDESIKFPIWTEKKGEVEEVVIAGPTCDSADIMYENYKYGLPLNLAIGDRLYWLSTGAYTTSYSAVEFNGFPPLKAFYV
>NC_021237.1|WP_015634138.1|1011830_1012988_-|ABC-transporter-ATP-binding-protein
MIELQNLTKTFRSNGKDVKAVDSVSLTVNEGEICVFLGPSGCGKSTTLKMINRLIMPTSGKVLINGEDTTDLDEVTLRRNIGYVIQQIGLFPNMTIEENIVVVPRLLGWDKQKCHDRARELMSMIKLEPKQYLHRYPRELSGGQQQRIGVIRALAADAPLLLMDEPFGAVDPINREMIQNEFFEMQRALNKTVIMVSHDIDEAIKLGDKIAIFRAGKLLQIDHPDTLLAHPADDFVSNFVGQDSTLKRLLLVKAEDAADNAPSVSPETPVADALELMDEHDRRYVVVTCAENKALGYVRRRDLHRQTGTCAQFLREFNATAAYDEHLRILLSRMYEFNRSWLPVMDAERVFLGEVTQESIAAYLSSGRSRGMKTNIVSPAETVVA
>NC_021237.1|WP_011059225.1|1012984_1013638_-|ABC-transporter-permease
MEFLNAFSHLDWAQVLHLTWQHITLVGIAVTLAIVFGVPLGVLMTRFPTLAGPLQASATVLLTIPSIALFGLLLPFYSKFGQGLGPLPAITAVFLYSLLPIMRNTYLALTGVEPGIREAARGIGMTFGQRLRMVELPIAVPVILAGVRTAVVMNIGVMTIAATIGAGGLGVLILASISRSDMSMLIVGAVLVSLLAIFADLLLQWLQRSLTPKGLLK
>NC_021237.1|WP_015634139.1|1013650_1014544_-|glycine-betaine-ABC-transporter-substrate-binding-protein
MKKLSLILGCALLFSTLAHAVEKPLIRIGARVFTEQTLLAEITSQYLRSKGYDTRVTGGLGSNLARSAQESGQLDLIWEYTGVSLVAYNHIDEKLDSEQSYARVKELDAKKGLVWLSPSKFSNTYALALPENVAKEHPQINSISDLTQALAENTKENRLVALDTEFANRSDGMAGMVKLYDMALTRKNTRQMDAGLVYTALRNGQVFAGLVYTTDGRLNAFKLKLLEDDKHYFPDYTAAPVVRQAYLDAHPQLAAELKPLAALFDDETMRQLNARVDVDHESPSAVAADFLRQHPIN
>NC_021237.1|WP_011059227.1|1014568_1015285_-|ABC-transporter-permease
MAIRYGKGLIGGAAVIALLALLVHWIGITTIEHYRDDLLFYLQAHLFLVLASMLAALVVGIPAGIVLSRPSMVGRAERFMQVFNIGNTVPPLAVLAIALGILGIGSGPAIFALFLASLLPIVRNTYEGLKNVQGSLKEAAVGIGMTPRQVLWKVELPNAVPIIIGGVRVALAINVGTAPLAFLIGANSLGSLIFPGIALNNQPQLLLGAACTALLALLLDGLVTLASRLWLERGLRPS
>NC_021237.1|WP_015634141.1|1015635_1017219_+|peptide-chain-release-factor-3
MTQQAAEVAKRRTFAIISHPDAGKTTITEKLLLMGKAIAVAGTVKSRKSDRHATSDWMEMEKQRGISITTSVMQFPYREHMINLLDTPGHEDFSEDTYRTLTAVDSALMVLDGGKGVEPRTIALMDVCRLRDTPIVSFINKLDRDIRDPIELLDEIEAVLKIKAAPITWPIGCYRDFKGVYHLAGDYIIVYTPGHGHERTETKIIEKLDSDEARAHLGDEYERFIEQLELVQGACHEFNQQEFLDGQLTPVFFGTALGNFGVDHVLDAVVDWAPLPLARVANERSVAPQEEKFSGFIFKIQANMDPKHRDRIAFMRICSGKYEKGMKMRHVRTGKDVRIGDALTFFSSEREQLEEAYAGDIIGLHNHGTIQIGDTFTEGEALGFTGIPHFAPELFRRVRLKDPLKSKQLRQGLQQLAEEGATQVFFPERSNDIILGAVGVLQFDVVASRLKEEYKVECSYEPITVWSARWIECSDKKKLEEFSNKAVENLALDGGGHLTYLAPTRVNLALMEERWPDVKFRATREHH

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Crispr_ID: NC_021237_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021237_2

2459014-2459176

Orphan

Consensus_repeat	Method
GCAGTCCCTTGTAGGAGCTGGCTTGCCAGCGAAGGCGCCCGCAAGATCACCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021237_2

>merge|NC_021237|2|2459014-2459176|CRISPRCasFinder
GCAGTCCCTTGTAGGAGCTGGCTTGCCAGCGAAGGCGCCCGCAAGATCACCGCCTGATCCCAGGGCCCATTCGCCGGCAAGCCGGCTCCTACGGATTTCGTCCCGTCACGCAGTCCGTTGTAGGAGCTGGCTTGCCAGCGAAGGCGCCCGCAAGATCACCGCC

>NC_021237|2|2|2459014-2459176|CRISPRCasFinder
GCAGTCCCTTGTAGGAGCTGGCTTGCCAGCGAAGGCGCCCGCAAGATCACCGCC	TGATCCCAGGGCCCATTCGCCGGCAAGCCGGCTCCTACGGATTTCGTCCCGTCAC
GCAGTCCGTTGTAGGAGCTGGCTTGCCAGCGAAGGCGCCCGCAAGATCACCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_021237.1\|WP_011060477.1\|2470663_2471548_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_021237.1\|WP_019094732.1\|2462528_2463506_+\|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|223997
NC_021237.1\|WP_015634952.1\|2455705_2456341_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|226932
NC_021237.1\|WP_015634954.1\|2456933_2457785_-\|3-hydroxybutyryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|180269
NC_021237.1\|WP_011060471.1\|2463536_2464550_+\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NC_021237.1\|WP_103408097.1\|2466942_2467692_+\|hypothetical-protein	unknown	unknown	unknown
NC_021237.1\|WP_015634957.1\|2459226_2461095_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225822
NC_021237.1\|WP_015634964.1\|2467806_2469093_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340926
NC_021237.1\|WP_015634947.1\|2448718_2449321_-\|hypothetical-protein	unknown	unknown	unknown
NC_021237.1\|WP_015634959.1\|2461450_2462551_+\|NAD(+)/NADH-kinase	unknown	unknown	gnl\|CDD\|225740
NC_021237.1\|WP_011060465.1\|2456344_2456941_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_021237.1\|WP_015634950.1\|2451874_2453497_-\|acyl-CoA-synthetase	unknown	unknown	gnl\|CDD\|236169
NC_021237.1\|WP_015634962.1\|2465720_2466824_+\|2,3-butanediol-dehydrogenase	unknown	unknown	gnl\|CDD\|176195
NC_021237.1\|WP_015634965.1\|2469167_2470547_-\|M20-family-metallopeptidase	unknown	unknown	gnl\|CDD\|235928
NC_021237.1\|WP_015634961.1\|2464549_2465662_+\|acetoin-dehydrogenase-dihydrolipoyllysine-residue-acetyltransferase-subunit	unknown	unknown	gnl\|CDD\|184875
NC_021237.1\|WP_015634949.1\|2449905_2451678_-\|acyl-CoA-dehydrogenase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|185635
NC_021237.1\|WP_041752103.1\|2448143_2448668_-\|hypothetical-protein	unknown	unknown	unknown
NC_021237.1\|WP_015634955.1\|2457956_2458973_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NC_021237.1\|WP_015634951.1\|2453807_2455709_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|226654
NC_021237.1\|WP_015634948.1\|2449371_2449785_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_021237.1\|WP_011060477.1\|2470663_2471548_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	4.13088e-38
NC_021237.1\|WP_015634952.1\|2455705_2456341_+\|response-regulator-transcription-factor	gnl\|CDD\|226932	COG4566, TtrR, Response regulator [Signal transduction mechanisms].	1.26971e-87
NC_021237.1\|WP_015634954.1\|2456933_2457785_-\|3-hydroxybutyryl-CoA-dehydrogenase	gnl\|CDD\|180269	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated.	2.09421e-172
NC_021237.1\|WP_011060471.1\|2463536_2464550_+\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	0
NC_021237.1\|WP_015634957.1\|2459226_2461095_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225822	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription].	0
NC_021237.1\|WP_015634964.1\|2467806_2469093_-\|MFS-transporter	gnl\|CDD\|340926	cd17368, MFS_CitA, Citrate-proton symporter of the Major Facilitator Superfamily of transporters. Citrate-proton symporter, also called citrate carrier protein or citrate transporter or citrate utilization protein A (CitA), is a proton symporter that functions in the uptake of citrate across the boundary membrane. It allows the utilization of citrate as a sole source of carbon and energy. In Klebsiella pneumoniae, the gene encoding this protein is called citH, instead of citA, which is the case for Escherichia coli and other organisms. CitA belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.10073e-120
NC_021237.1\|WP_015634959.1\|2461450_2462551_+\|NAD(+)/NADH-kinase	gnl\|CDD\|225740	COG3199, COG3199, Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only].	6.30666e-64
NC_021237.1\|WP_019094732.1\|2462528_2463506_+\|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha	gnl\|CDD\|223997	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion].	5.57603e-141
NC_021237.1\|WP_011060465.1\|2456344_2456941_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.52305e-12
NC_021237.1\|WP_015634950.1\|2451874_2453497_-\|acyl-CoA-synthetase	gnl\|CDD\|236169	PRK08162, PRK08162, acyl-CoA synthetase; Validated.	0
NC_021237.1\|WP_015634965.1\|2469167_2470547_-\|M20-family-metallopeptidase	gnl\|CDD\|235928	PRK07079, PRK07079, hypothetical protein; Provisional.	0
NC_021237.1\|WP_015634949.1\|2449905_2451678_-\|acyl-CoA-dehydrogenase-C-terminal-domain-containing-protein	gnl\|CDD\|185635	PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional.	0
NC_021237.1\|WP_015634961.1\|2464549_2465662_+\|acetoin-dehydrogenase-dihydrolipoyllysine-residue-acetyltransferase-subunit	gnl\|CDD\|184875	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional.	0
NC_021237.1\|WP_015634955.1\|2457956_2458973_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.48015e-28
NC_021237.1\|WP_015634951.1\|2453807_2455709_+\|PAS-domain-S-box-protein	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	2.05188e-46
NC_021237.1\|WP_015634962.1\|2465720_2466824_+\|2,3-butanediol-dehydrogenase	gnl\|CDD\|176195	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.	1.93133e-180

>NC_021237.1|WP_015634955.1|2457956_2458973_+|AraC-family-transcriptional-regulator
MRESDSVAVYFVRVMTHALRQQPARLAAVLREAGIDPALLDQPRARVPGSAFAALWLIQIRELQDEFFQLDSRGMPPGAFALICRGLIQEPNLEKALRQCLNNFGLFLRDVGASLSLRGKRAVISLDSRCADPLRSHYAEETLLVLVISLLCWLGGRRIPIDRADFRHSRLSLSDDALLWGSNLSWNAGRTEIEFASRFLRLPVVQDLASLKVFLRSAPQWLVIRFRNQHGLTTQVHQRLRGSHYSQWPTLEAFAREVQMSASTLRRRLEREGGSYQEIKDEVRRGVAVELLRRSAASISEIAELTGFQEPSAFHRAFKKWTGESPGRYRARFQPAPA
>NC_021237.1|WP_015634954.1|2456933_2457785_-|3-hydroxybutyryl-CoA-dehydrogenase
MNLANIGVIGAGTMGNGIAQVCAQAGFDVTLLDIAQGALEKALATIGKNLDRQVSKGTLGEDDKLAALGRIRISTDYGVLKDAQLVIEAATENLDLKLKVLQQIAAQVSAECVIASNTSSLSITQLAASVSAPERFIGLHFFNPVPVMGLIEVIRGLQTSDATHALAMNMAQRLGKTAITAGNRPGFVVNRILVPMINEAILVFQEGLASAEDIDAGMRLGCNQPIGPLALADLIGLDTLLAILEAFYDGFNDSKYRPAPLLKEMVAAGYLGRKTGRGFHHYG
>NC_021237.1|WP_011060465.1|2456344_2456941_-|TetR/AcrR-family-transcriptional-regulator
MAERCSRFAESRDKALELFASKGFGQVGMRELASHLGLTPGSLYHHYPSKQHLLLDLIEEFFDELHSTLKRLQRRKLQGDCLPALIRAHLKLHRELPRHFRLVERDSGCLNPDQQLRVGQLRERYEQQLVQLLGTPTGLGPQAQRAAAHALANLLNSAPSWFSEQPLAEREREALLENLLSGAIERLLGGVPVRSAVA
>NC_021237.1|WP_015634952.1|2455705_2456341_+|response-regulator-transcription-factor
MTSVAQQLVYVVDDDPGMLDSTVWLLESVGLKALPFTSGREFLEHCDPSLNACVLLDVRMPGMGGLNVQEELRQRDIRLPLIFVSGHADVPIVVRAFKAGAVDFIEKPYNEQLLLDSVQQALSRADRHQNQSAGQARVQRLLESLTPREKDVLLPLVQGYTNREIAEQLGVSIKTIDLYRSRVMKRMQAEHLPELVGMAIAAGLVDPLHLR
>NC_021237.1|WP_015634951.1|2453807_2455709_+|PAS-domain-S-box-protein
MPDSTHLRHWLRLQREGQLPDSPWLGHDPQPSLLLDAQAQPLDLNPALRQWLDDAATGDLAALLPVNHPALVRACLEQQRAIEQVEAQWGERILLWSFIPDPHRQRVLARCQEATAQVRAERESAKARRLYRLITENTTDLISRHTPDGSFLDASPASWTLLGYWPEQLRGRLARSLFHSQDLAGLMQRSRDALEQDGYHTMTYRIRHRDGHYLWFETACRGIRDTYTGTVVEVVAVSRDITARVQAEENKRRLAEVVEANPDPVLFIQPGGAVTYLNPAARRTLGLGDGQAMPPLAAILSAAVLDSLQREGWDRAEHSGRWNIEARLQPPAGGASVPVSLMLLAHRAASGERFYSLVAHDQSERELREAQQRHHQDELAHTARLVTLGELASGIAHEINQPLAAVVNYANASQRYLQALGTQPEAARKVAQGLERIAEQATHAAEVIKRLRAFLRKGGRRVQALDIAEVARETVRLCAWEAQASQVTIDLQLADNLPPVYADRVLLEQVLLNLLRNAIEANREVHGQQGSHIVLAAEATAEGGVQISVSDQGPGVCAEQLPQLFTPFYTSKANGLGLGLSMSRSIVEGFGGDLQAQPQAIGLRMCCRLPASAPADPSATSQATSPATTGARQ
>NC_021237.1|WP_015634950.1|2451874_2453497_-|acyl-CoA-synthetase
MSIYEQGLAPTAVNHIALSPLSFIERTAAVYPDYPAVIHGSIRRTWAQTYSRCRRLASALAGRGIGKNDTVAVMLPNIPAMLEAHFGVPMIGAVLNALNVRLDAEAIAFMLAHGEAKVLIADREFHEVIHAAVAMLDHPPLVIDLDDPEYGEGQPVSELDYEAFLAEGDPEFAWQWPDDEWQAIALNYTSGTTGNPKGVVYHHRGAYLNALGNQMTWAMGNHPVYLWTLPMFHCNGWCYPWTVTALAGVHVFLRRVDPQKILDLIREHQVTHLCGAPIVLNALVNMPDTAKAAIDHPVNAMVAGAAPPAKVIGAVEEMGIKVTHVYGLTEVYGPVTLCAWHAAWDELPLEQRAQIKSRQGVRYPTLEGVMVADPKTLEPTPRDGQTIGEIFMRGNTVMKGYLKNPTATAEAFEGGWFHTGDLGVTHPDGYVEIRDRLKDIIISGGENISTIELEGVLYRHPAVLEAAVVARPDEKWGETPCAFITLKADHQDVREAEIIAFCREHLAGFKVPRTVVFSPLPKTSTGKIQKFVLRDMAKNL
>NC_021237.1|WP_015634949.1|2449905_2451678_-|acyl-CoA-dehydrogenase-C-terminal-domain-containing-protein
MPEFNAPLRDMRFVLHEVFNAPKLWARLPALADTVDGDTADAILEEAAKVTGNLIAPLNRSGDEEGASWHAGQVRTPAGFKEAYSTYIQGGWVGLSGNPAYGGMGMPKMLAVQFEEMLYAANSSFALYSALSSGACLAIDAHASEALKQLYLPPMYEGRWAGSMCLTEAHAGTDLGIIRTRAEPQADGSYRISGSKIFITGGEQDLTENIIHLVLAKLPDAPAGPKGISLFLVPKIHVDANGNLGAANAVSCGSIEHKMGIKASATCVLNFDGATGWLIGEANKGLAAMFTMMNYERLSIGIQGIGCAENSYQNARTYARERIQSRSPAGPVAKDKIADPIIVHPDVRRMLLTMKAMTEGGRAFASYVGQQLDLAKFADQPHERHNAEALVALLTPVAKAFFTDTGLDSCVLGQQIFGGHGYIREWGQEQLVRDVRIAQIYEGTNGIQALDLLGRKVVGNGGVALRLFTGEIRDYAYLPGAAYAAELLDAVQRLEDLSDWLREQAAQNPHAVGSACVEYLQLFGYVAYAYLWARMAQVAEHKRSEDDGFYGAKLATARFYFSRMLPRILSLEQSIRAGSASLFGLDAEHF
>NC_021237.1|WP_015634948.1|2449371_2449785_-|hypothetical-protein
MLAPALIIASSAIVLLLGTLHLIYTFATDKFQPRDPALAERMRQVSPMITRQTSLWRAWVGFNASHSLGAMLFGLVYGYLAWLHPALLLEARGLLLIGLGFLASLWVLAIRYWFRIPLAGISIALVLFAVACGLLLV
>NC_021237.1|WP_015634947.1|2448718_2449321_-|hypothetical-protein
MSPLHTFWSRLYYLLCWIAVAAQLATMIRCNLHLIVPREVGGTLFGGSMGFMLYLGGWAFSVIGLGLAVLTRVPGARLAWIIGGLVQLLLGLWWRINYPDDFDGNLIFSIQARELDYVMVFGFALVYSGIYLLHRQRLKPRAPATLRELSLRIAWAVLLGGFFIPPLVNASKAPLPYCAFNRAGEQLSLCLGPGTRVIVD
>NC_021237.1|WP_041752103.1|2448143_2448668_-|hypothetical-protein
MSRLFTLWLWLYRPLCWIVVAAPLSLMLLCDVQMMQPRDVSSTLFGGAMGFQLYLFVWVLCLIGLAVTLLTRMPGARLAWLLAGLVPLLLGAWWRLDYPDDQDGSLAISPQKWELEYMMGITCVFVVSSLYFYWRRRLAPRPAADNADELFLQTLWALALAAAFILPLLSFMQP
>NC_021237.1|WP_015634957.1|2459226_2461095_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MLSAHSKAHVDCVSRVLKNADHLPQAPVPSLILDSWRRSMEQHQLDPGSLQGPRILSENVLKECRERSELFLRIASEEVARLHGRVRDADYCVLLTDAQGQTIDYRVESTLRNDCRKAGLYLGTCWSEGEEGTCGVAAVLTARTPITVHKRDHFRAAFIGLTCSAAPVFDPQGELLGVLDVSAVRSPDDRRSQHLIRQMVVQSAREIEQAFFMNSAQGYWVLRAHASPGYVDSQPDYLLAWDDDGCLRALNPAARHYLLRRYGRLPQHIAQVFDPQLLQRARDEALCPLSDNLHGRLQAPRRPAQRPRLSLAGEPLDPRVEQSLRLAVRVKDRHLPVLIQGETGSGKEVFARQLHQASQRRDRPFVAVNCAAIPESLIESELFGYVAGAFTGASNKGMQGLLQQADGGTLFLDEIGDMPLALQTRLLRVLAEGEVAPLGASRRQSVDIQVICATHRDLEALVAEGGFREDLYFRLGGARFQLPPLRERSDRLALITRIVEEESKRCGAPVQLGNAALECLLGYRWPGNVRQLRHVLRYACAVCEGPLIQLHDLPEQLRGAEAEGALPALETATSPERQALLDALVRHRWKPVAAAKALGISRATLYRRVQQHGIQMPGRSPA
>NC_021237.1|WP_015634959.1|2461450_2462551_+|NAD(+)/NADH-kinase
MNRRPLTVGIIANPASGRDVRRLTANAGLFSSTDKVSVIQRLLAAFGATGIEQVLMPTDMTGIAAAVQKNSRSRQAREQHWPALEFLDLTLRQSVEDTRQAARWMAERGVSLIAVLGGDGTHKAVAAEVGDIPLLTLSTGTNNAFPELREATSAGLAGGLYASGRVPAEIALRRNKRLLVREPSRGLCEVALVDVAVSPLAFVGARAISRASDLAEVFVTFAEPQSIGISALCGLWLPVTRQEPHGAWMRLDPQSPEALLVPLAPGLLQGCGVLEAGYLQPDVPQPLCLNAGTLALDGEREIEFNPHDRPTVTLDAGGPLSIDVNAVLEHAARQRLLAIDRHHRQHPVNLQSEDTLENKNVDTPDH
>NC_021237.1|WP_019094732.1|2462528_2463506_+|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha
MSTPLTTDQLLHAYRVMRTIRAFEERLHVEFATGEIPGFVHLYAGEEASAAGVMAHLRDDDCIASNHRGHGHCIAKGVDVYGMMAEIYGKKTGVCQGKGGSMHIADFEKGMLGANGIVGAGAPLVVGAALAARLQGTDGVSVVFFGDGGSNEGAVFEAMNMASVWNLPCLFIAENNGYAEATASNWSVACDHIADRAAGFGMPGVTVDGFDFFAVHEAAGAAVERARAGEGPSLIEVKLTRYYGHFEGDAQTYRAPDEVKHYREHNDCLMQFRERTTRSGLVQASQLDQIDADVEALIEDAVRKAKTDPKPSPADLLSDVYVAYP
>NC_021237.1|WP_011060471.1|2463536_2464550_+|alpha-ketoacid-dehydrogenase-subunit-beta
MARKISYQQAINEALAQEMRRDPSVFIMGEDVAGGAGAPGDNDAWGGVLGVTKGLYHQFPGRVLDTPLSEIGYVGAAVGAATRGVRPVCELMFVDFAGCCLDQILNQAAKFRYMFGGKAQTPLVIRTMVGAGLRAAAQHSQMLTSLWTHIPGLKVVCPSSPYDAKGLLIQAIRDNDPVIFCEHKLLYSLQGEVPEESYAIPFGEANFLRDGKDVTLVSYGRTVNTALDAARSLAGRGIDCEVIDLRTTSPLDEDSILESVEKTGRLVVIDEANPRCSMATDISALVAQKAFASLKAPIEMVTAPHTPVPFSDALEDLYIPDAAKIEKAVLTVIEWSR
>NC_021237.1|WP_015634961.1|2464549_2465662_+|acetoin-dehydrogenase-dihydrolipoyllysine-residue-acetyltransferase-subunit
MSQIHTLTMPKWGLSMTEGRVDAWLKEEGQSISKGDEVLDVETDKISSSVEAPFSGILRRQIARQDETLAVGALLGIVVEGEASDAEIDAVIEQFQASFVPGDSADEDSGPAPQKVELGGRLIRYFERGEGGTPLLLVHGFGGDLNNWLFNHEALAAGRRVIALDLPGHGESAKALQRGDLDELSQVLLALLDHLEIPVVHLVGHSMGGAVSLNTARLAPDRVRTLTLIGSAGLGREINGDYLQGFVEASNRNALKPQLVQLFSNAELVNRQMLDDMLKYKRLEGVQAALGQLAQQLFADGRQQADLRPVVQDGPQPVLVIWGSDDRIIPVSHSADLKAQIEVLPGQGHMLQMEAAEQVNRLILDFIQQH
>NC_021237.1|WP_015634962.1|2465720_2466824_+|2,3-butanediol-dehydrogenase
MSVSLKPVPSMRAAVWHGRHDIRVEDVPLPEAPPAGWVQIRVDWCGICGSDLHEYVAGPVFIPVDAPHPLTGIKGQCILGHEFCGEIVALGEGVQGFSLGQPVAADACQHCGTCYYCTHGLYNICENLAFTGLMNNGAFAELVNVPANLLYALPANFPAEAGALIEPLAVGMHAVKKAGSLLGQNVVVVGAGTIGLCTIMCAKAAGAAQVIALEMSGARKAKALEVGATHVLDPKECDALAEVKRLTGGLGADVSFECIGNKHTAKLAIDLIRKAGKCVMVGIFEEPSEFNFFELVATEKTVLGALAYNGEFADVIAFIADGRLDISPLVTGRIQLEEIVGQGFEELVNNKEHNVKIIVSPGQLRRS
>NC_021237.1|WP_103408097.1|2466942_2467692_+|hypothetical-protein
MAYAPSSCMMQTRFQRLFLVALLMLGATACTQQQGRDIAKQFREGKPDEFFQTSVDRMATIGMRDNLQSLYLLMGKLYLRNPSQWRKSGFPDGTTAQREIRNAIEKRQPLPALGDRRDLAALSYSLSPEFQGDRVGAFIYAIGSMLVTAHGGRTEFYMTDTIDPQFISNAARNIEKATWLLSQRQDANGVLLLFSNEISEEGSNLSFAVEFGKIVARLDLLTQILDERYRRVGFNYAQSLLLMNFLPVQ
>NC_021237.1|WP_015634964.1|2467806_2469093_-|MFS-transporter
MTALATTSTATRVEPKALWKPIGAALIGNTLEWFDLSIYAYFALTISQVFFPTADPTFSLLLAFATFGISFLIRPLGAAVLGSYADRKGRKKALTLSILIMLTGTLLIAIMPSYATLGLAAPIGILLARLLQGFSAGGEFGTSTAFMLEHAPPRTRHFVASLQFASQGFGVVIASTFGYFLTKHLDAQQMLDWGWRVPFFFGLLLGPVGLYIRRTVDESPDFKASEPGERPLREVLVTQKTLLLIAMGTLVVSTASNYMIQYMPSYAATSLNIAQSSGFLATLTGGLILTIITPIVGYLSGHIGRLKIMLAAAVVYAVAILPAFFWLNSRPSASSLLLVVALMALIKAVYFAPLPSLMADIFPVRTRVTGMSLSYNLGVTIFGGFAPVIATGLIALTGSQLAPSFYLMLAAALSVVALLMARKKLGMT
>NC_021237.1|WP_015634965.1|2469167_2470547_-|M20-family-metallopeptidase
MTKQAALAGVRQYLDDGHFEQDLRRRVAFRSDSQDPAHASELPRYLLEEIQPLLQRLGFDCHMLANPEAGGPFLIATRLEDPALHTVLSYGHGDVVPGYAEQWRAGLNPWQLTLEGERWYGRGTADNKGQHSINLTALEQVLKARDGRLGFNLKLLFEMGEEAGSPGLRQLCQEQRELLRADVFIASDGPRLNQARPTLFLGSRGSAQFRLEVNTRDKGLHSGNWGGVMSNPGVVLANALASLVDQNGRIRCRELLPANIPDNVRAAIADLEIQRESLGRPLDEHWGEPGLTLGERLFAWNTLEILAFSTGNPQKPVNAIPPRAVAFCQLRFVLGTPWQQLESLLRAHLDREGFSQVEIVMERCSPATRLDPDNPWVRFAKTSIAGSSAQRLALLPNLAGTLPNDIFAEVLGLPTLWIPHSYPGCSQHAPDEHLLLPVIREGLEIMTALFWDLGDLPRT
>NC_021237.1|WP_011060477.1|2470663_2471548_+|LysR-family-transcriptional-regulator
MDYRYFLAVIDAGSLAAAGERLHIAPSAVSRQIALLEESVGVALFERRPRGMQLTAAGEALAEHARRTWLEQENILAELRGEGYPGAKVIRLVSTEGLSRYFLPRVLLEHYRLRPGAEYRLDVISPHECVQRIRRGEADVGLTFSTEPVEGVNVCYSIRSPIRALMRAGHPLASAGVLSLEQVQAFPVALTPKGTTQRQLLDLVCQMDGLSFDQVMTCNFSGALHEFVRQSDTVAFASAISGEGQGMDGLVSVPLSNPRLGDRDIQVLTMPKRVLPESLAFFIDTLIARLQKEG

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Crispr_ID: NC_021237_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021237_3

2587313-2587437

Orphan

Consensus_repeat	Method
CCCACCGACCGTAGGAGCTGGCTTGCCAGCGAAGGGGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021237_3

>merge|NC_021237|3|2587313-2587437|CRISPRCasFinder
CCCACCGACCGTAGGAGCTGGCTTGCCAGCGAAGGGGCCCGCGAGATCGCCTTCGCCGGCAAGCCGGCTCCTACATGGGCAGCTCCCCACCGACCGTAGGAGCTGGCTTGCCAGCGAAAGGGCCC

>NC_021237|3|3|2587313-2587437|CRISPRCasFinder
CCCACCGACCGTAGGAGCTGGCTTGCCAGCGAAGGGGCCC	GCGAGATCGCCTTCGCCGGCAAGCCGGCTCCTACATGGGCAGCTC
CCCACCGACCGTAGGAGCTGGCTTGCCAGCGAAAGGGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_021237.1\|WP_015635062.1\|2580815_2580989_+\|DUF1427-family-protein	unknown	unknown	gnl\|CDD\|369277
NC_021237.1\|WP_041752743.1\|2579812_2580586_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380379
NC_021237.1\|WP_015635071.1\|2589815_2590586_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270248
NC_021237.1\|WP_015635066.1\|2583480_2584437_-\|nucleoside-specific-channel-forming-protein-Tsx	unknown	unknown	gnl\|CDD\|237911
NC_021237.1\|WP_015635072.1\|2591299_2592046_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NC_021237.1\|WP_015635067.1\|2584735_2585101_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|379639
NC_021237.1\|WP_011060581.1\|2590646_2591303_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NC_021237.1\|WP_011060569.1\|2579360_2579588_-\|hypothetical-protein	unknown	unknown	unknown
NC_021237.1\|WP_041117289.1\|2582364_2583393_-\|purine-nucleoside-permease	unknown	unknown	gnl\|CDD\|377669
NC_021237.1\|WP_011060572.1\|2581030_2581987_+\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223677
NC_021237.1\|WP_015635073.1\|2592042_2593332_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NC_021237.1\|WP_015635068.1\|2585144_2586179_+\|selenide,-water-dikinase-SelD	unknown	unknown	gnl\|CDD\|234870
NC_021237.1\|WP_015635070.1\|2587444_2588500_-\|permease	unknown	unknown	gnl\|CDD\|223773
NC_021237.1\|WP_041752143.1\|2596055_2596652_+\|hypothetical-protein	unknown	unknown	unknown
NC_021237.1\|WP_015635069.1\|2586178_2587276_+\|tRNA-2-selenouridine(34)-synthase-MnmH	unknown	unknown	gnl\|CDD\|236982
NC_021237.1\|WP_011060579.1\|2588867_2589644_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NC_021237.1\|WP_015635076.1\|2595156_2596059_+\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NC_021237.1\|WP_015635075.1\|2594234_2594939_+\|glutathione-S-transferase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|183298
NC_021237.1\|WP_015635060.1\|2579140_2579311_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366903
NC_021237.1\|WP_041752141.1\|2593332_2594025_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_021237.1\|WP_015635062.1\|2580815_2580989_+\|DUF1427-family-protein	gnl\|CDD\|369277	pfam07235, DUF1427, Protein of unknown function (DUF1427). This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.	1.60872e-21
NC_021237.1\|WP_041752743.1\|2579812_2580586_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|380379	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain. This family contains mostly bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included in this family is Escherichia coli HTH-type transcriptional regulator NimR (also called YeaM) that negatively regulates expression of the nimT operon and its own expression. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	7.74668e-32
NC_021237.1\|WP_015635071.1\|2589815_2590586_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270248	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold. This domain is found in solute binding proteins that serve as initial receptors in the ABC transport, signal transduction and channel gating. The PBP2 proteins share the same architecture as periplasmic binding proteins type 1, but have a different topology. They are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the family includes ionotropic glutamate receptors and unorthodox sensor proteins involved in signal transduction.	1.23598e-59
NC_021237.1\|WP_015635066.1\|2583480_2584437_-\|nucleoside-specific-channel-forming-protein-Tsx	gnl\|CDD\|237911	PRK15106, PRK15106, nucleoside-specific channel-forming protein Tsx; Provisional.	2.88253e-168
NC_021237.1\|WP_015635072.1\|2591299_2592046_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.01257e-148
NC_021237.1\|WP_015635067.1\|2584735_2585101_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|379639	pfam14534, DUF4440, Domain of unknown function (DUF4440).	5.33964e-22
NC_021237.1\|WP_011060581.1\|2590646_2591303_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.17579e-76
NC_021237.1\|WP_041117289.1\|2582364_2583393_-\|purine-nucleoside-permease	gnl\|CDD\|377669	pfam06516, NUP, Purine nucleoside permease (NUP). This family consists of several purine nucleoside permease from both bacteria and fungi.	1.07973e-171
NC_021237.1\|WP_011060572.1\|2581030_2581987_+\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|223677	COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only].	1.95141e-61
NC_021237.1\|WP_015635073.1\|2592042_2593332_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	8.50919e-64
NC_021237.1\|WP_015635068.1\|2585144_2586179_+\|selenide,-water-dikinase-SelD	gnl\|CDD\|234870	PRK00943, PRK00943, selenide, water dikinase SelD.	0
NC_021237.1\|WP_015635070.1\|2587444_2588500_-\|permease	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	1.64614e-48
NC_021237.1\|WP_015635069.1\|2586178_2587276_+\|tRNA-2-selenouridine(34)-synthase-MnmH	gnl\|CDD\|236982	PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional.	0
NC_021237.1\|WP_011060579.1\|2588867_2589644_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	7.64554e-81
NC_021237.1\|WP_015635076.1\|2595156_2596059_+\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	3.32848e-81
NC_021237.1\|WP_015635060.1\|2579140_2579311_+\|hypothetical-protein	gnl\|CDD\|366903	pfam02069, Metallothio_Pro, Prokaryotic metallothionein.	0.00296068
NC_021237.1\|WP_015635075.1\|2594234_2594939_+\|glutathione-S-transferase-N-terminal-domain-containing-protein	gnl\|CDD\|183298	PRK11752, PRK11752, putative S-transferase; Provisional.	1.68517e-64

>NC_021237.1|WP_015635069.1|2586178_2587276_+|tRNA-2-selenouridine(34)-synthase-MnmH
MSLDCTDYREIFLNDRPMMDTRAPIEFTKGAFPGVLNLPLMTDQERQRVGTCYKQQGQQAAIVLGHQLVSGAIKEQRIQAWADFARAHPDGLLYCFRGGLRSQIVQQWLKDEAGIAYPRVGGGYKAMRTFLLDTTEQALQQCDFVLLGGMTGTGKTQVLGQLDNALDLEGHANHRGSSFGRRATGQPSNIDFENCLAVDLLKKRERGVQSFVLEDENRMIGSCALPLPLYQSMQGLPMVWLEDSLANRVQRILDDYVVNLCAEFVAVHGEQGFALFAERLLESLNKIHKRLGGERHQRLFLLMEAALAEQARSGDVERHRAWIKGLLGEYYDPMYAFQRESKGARIEFSGEHGAVLDYLRQRSPR
>NC_021237.1|WP_015635068.1|2585144_2586179_+|selenide,-water-dikinase-SelD
MSEPIRLTQYSHGAGCGCKISPQVLEVILAGSGAQNLDPKLWVGNASRDDAAVYAIDEERGVVSTTDFFMPIVDDPFDFGRIAATNAISDIYAMGGDPLMAIAILGWPVNVLAPEIAREVIRGGRAVCDAAGIPLAGGHSIDAPEPIFGLAVTGLVEKRFMKRNDTATAGCLLYLTKPLGIGVLTTAEKKGKLRSADIGLARDWMCTLNKPGSRFGKLEGVTAMTDVTGFGLLGHLVEMADGSGLTARIHYDRVPRLPGVEYYLDQGCVPGGTLRNYSSYADKVGRVQELHKRVLCDPQTSGGLLVAVTPQGNAEFLALAAELGLELAPIGELVERQSHAVEVF
>NC_021237.1|WP_015635067.1|2584735_2585101_+|nuclear-transport-factor-2-family-protein
MELSDHLLMLERQLQQAEVRADRQALEALLADDFLEFGVSGGRWDKAQVLASLPQQVFIERRISEFAVQCLGADLAQVTYLCHNAAAPGRAASSAWRSSLWRCQEGRWQMLFHQGTPRPSA
>NC_021237.1|WP_015635066.1|2583480_2584437_-|nucleoside-specific-channel-forming-protein-Tsx
MLNPLRRHASCRTLAVSLWLAGVTGLPSAFAQPPAAPADDSAQGESLSADVQPAKQGAYLSDWYNQDLMLIGSKDISFGPRPADDIYLEYEYFGRKGPFELYGYIDLPKILDIGNSHDKGIWDHGSPLFMEHEPRISIDYLAGRSLAIGPFKEWYVAFDWIYDHGSRTANRANTLYSGLGTDIDTHSRVNLSANFYGRYQWENYGASNEYSWDGYRAQLKYIVPIDSFSNGASLTYIGFTNFDFGSDLHKDNPARTANATVATNVLLYSFTHLRFTLVGRYFHNGGNWEDGSVLNFGDGEFRARSNGWGYYAGVGYQF
>NC_021237.1|WP_041117289.1|2582364_2583393_-|purine-nucleoside-permease
MRGIQKVSWAMGLSALVASGAWASEAPIKPKVVLISMFAPEAQHWIERLELKREIRVPGLAAEYPVIRCNDREVCLLTTGMGQTNAAASTLALALSPKFDLRKSYFLIAGIAGISPQHGTIGTAAWAHYLVEFGTQWEIDSRDAPEGWPTGYLGINTKGPNEKPPLDYKTEVFELNPKLQAKAFALSRNVALSESKESAAWRLKYPKAPANQPPVVTRCDTLAGNTWFSGTRLSERAEVWTRLLTDNKGTYCTTQQEDNSTYEALLRASREGLLDIQRLAVVRAGSDFDRPAPGASEVDNLLKYADQGGFVPALENLYRAGNPLVQDILGNWSAWEKGVPET
>NC_021237.1|WP_011060572.1|2581030_2581987_+|zinc-binding-alcohol-dehydrogenase-family-protein
MKALQFSATGDLAALHVVDLPTPVPGAGQVLVRIKAAGLNPSDVKNVLGRFPYTTLPRVPGRDFAGVVEQGPAQLLGQEVWGTGKELGFFADGSHAQYVVLSAQGVARKPRHLSFAQAASLGVPYTTAWDALERSGVARDTRLLVIGGGAVASAALALAKVRGARVLAAARRVEQVQALEAQGYPTLHLQQPETLAAQVAEVYAGGAEVIFDTTGFWLPASVPALATFGRIAIIAAPVDGHVQLPALALYRKGGSVVGINSLLYGVEACAAMLEQFGRYFDEGLLPLPEGLVESPLERGLERYAEVNQGRGEKIILIP
>NC_021237.1|WP_015635062.1|2580815_2580989_+|DUF1427-family-protein
MNYLISLAAGLLVGLLYGALQVRSPAPPAIALVGLLGMLGGEQLWPLGRQLLGSWLS
>NC_021237.1|WP_041752743.1|2579812_2580586_+|helix-turn-helix-transcriptional-regulator
MALAAPPDLSDPAIPVQPLARTYLRGLFIEPHEHDWGQLLYAMSGVMWVETPHEALVVPPQRAVWLPSGVSHGIRVVSDLQMRNIYLRPSLAATLDPSVQVLQVDNLLRELIVRLVELDPPQPEYYEALVGLALLELRRARRSQLKIALPDASDRRLGSLCQAVMAAPSLAISFEQHADAAGASVRTLARLFKEQLGVGFAEWRRQVQLATAAAELIQGVPVSRIARELGYSPSSFSDMFRRELGVAPSQYASASQV
>NC_021237.1|WP_011060569.1|2579360_2579588_-|hypothetical-protein
MNNAKLFVIEYTLHGAPKSFIIRQEKMDNAEAWHWASCDAGVGRIGRFGRERVKKTSKPMAEKFGIENVTWRPSV
>NC_021237.1|WP_015635060.1|2579140_2579311_+|hypothetical-protein
MSTQTCACPACTCKLGAHAIVRHGKHYCCQACADHHAHGEPCASTEGCKCAKGAHG
>NC_021237.1|WP_015635070.1|2587444_2588500_-|permease
MSNLASTQPNRGWAFWCKPLLFLLVAAIGLYYVKWSPYYLKAFVAADSHSIGASILNDQQSSPWSAALAYSQVYFLAIWKAAVLAVILGSLLQVLIPRDWLLRLFGRAGFGSTLRGGLFALPGMMCSCCAAPVAAGLRRQKVSVGAALAFWIANPVLNPATLVFMGFVLGWGFSALRLVAGIVLVLGVSLVAQRVAGPEQLPEAAVDAVVEASTVNDQPFLSRWGKTLWQLFWSTIPIYVLAVLVLGAARVWLFPHIDGAMGDSLWWLVPLAIAGTLFVIPTAAEIPIVQTMMTLGLGTGPAVALLMTLPSISLPSLLMLRKDFDARVLVTVAVLTMLVGIVCGLIGAVLL
>NC_021237.1|WP_011060579.1|2588867_2589644_-|IclR-family-transcriptional-regulator
MSDNNNSLFNQSLEKGLAVLRAFNAAQRTMNLAEIATAADINKSSAQRMIHTLEQLGYVRKHPQTKRFQLTPRVMEIGYNYLAADTLVDVANPFLAELAQVTGETTNLTEPDGLDMVYVARFVAPKFIPIHMPIGSRIPMYCTGSGRAYLSALPAAEALQILQASDRKAHTRHTRTDLDEIQREIDATQRRGYALNPEELFLGDMAIAAPILDGKGLPVAAVHVVVPSSRWTLEEAERKLAPSVIECARAIRTSIRTL
>NC_021237.1|WP_015635071.1|2589815_2590586_+|amino-acid-ABC-transporter-substrate-binding-protein
MHTRTRVLAPAVFAFCCALGLGLSASAQAEPLYKVGATATGIPFTFLDVKSQSIEGMMIDAARAVGKAGGFAVDIQQTTFAALIPSLTSNKIDIISAAMLRTPVREKVVQYSDPVFSYGEGLIVKADDASDYRRMEDLAGETVGAQVGTVFIDELNKRGIFKEVRGYDSIPDLMRDLALGRIKAGFADRPILAYQLAQGTQNKVRLVKGYQPVVMGDVCLIVRKGDAQTLAEVNRGIAAIKADGTLDRIIEHWKLN
>NC_021237.1|WP_011060581.1|2590646_2591303_+|amino-acid-ABC-transporter-permease
MFLQNALDFLPILLKGAVVTLQVTVGSFVLSSLIGLVFALMMVSKVRSVALFAIGVVNVIRGLPIIVQLFYIYFVLPDFGIQLTAMQAGVIGLGIAYSAYQAENFRAGIQAIHQGQIEAAESIGMRGPMIMRRVVLPQALRIALPPYGNTLVMMLKDSSLVSTITVAEMTRAGQLIASSTFENMTVYTLVALLYLALSLPLSFALRRLEARISTRRKP
>NC_021237.1|WP_015635072.1|2591299_2592046_+|amino-acid-ABC-transporter-ATP-binding-protein
MIQIKGVHKSFGNVAVLEGIDLQVHSGEVVCLIGPSGSGKSTLLRCINGLESYEQGDILVSGARVDRQAKSIHELRTRVAMVFQRFNLFPHRTALQNVTEGPIYVKKQDPRQARLRAEALLEKVGLAHRMHAYPDELSGGQQQRVAIARALAMDPEAILFDEPTSALDPELVGEVLAVMRKLADEGMTMIVVTHEMGFAQDVADQVCFLHSGRIVEAGPARTVLSTPSHPRTQDFLRRLLNQGTEVQA
>NC_021237.1|WP_015635073.1|2592042_2593332_+|FAD-binding-oxidoreductase
MSVSQTLRMPPSLWAATARPAEHTPALAEDREVDVAIVGAGYTGLVSALRLAQSGASVCVLDAGEPGWGASGRNGGQVIPGLKFDPEQLLAKFGPVQGEALIDAVGGAADEVFELIKEHGIRCDATRKGWIQPAFSGAAMHTLEQRAEQWRQRGVAVELLDKAAVSQRIGSSQYLGGWVDPRAGSLHPLNYARGLARVAMGLGVSIHGQSRVRKLQRDGGRWTLETDRSARVRASKVLLATNGYTDDLWPGLRQTVIAANSFIIATRPLPAELRQSILPGGEVCSDARRLLLYFKQDAQGRLLLGGRGPFSEPRRDADWNHLERSLLNLFPQLAGVPIEYRWSGRVALTPSFLPQLHEPAPGLSILLGYNGRGIALSTLLGKHLAARLTGAGQGFPFPVTPLRPIPLHGLQRLYLGAGIAWYRLLDALG
>NC_021237.1|WP_041752141.1|2593332_2594025_-|hypothetical-protein
MKNDRTMNLPRRLARHFKHRRYLPLPALLLGGALCLSLESSASRAQPVDGTQTLVFLRHAEKPAGGLGQLNCQGLNRAIDLASLLPEKFGKAQYVFAANPTRNVEEGELDNSYSYIRPLMTISPSAIKLGLPVNIDFAANDTSDLADELLHDRYHNSIIYTAWSHGYLPELINKVAEEAVGEKRPITEDWASSDFDSLYVLTLTWRNGKASLHSQSYKQGLDGGEQDCPS
>NC_021237.1|WP_015635075.1|2594234_2594939_+|glutathione-S-transferase-N-terminal-domain-containing-protein
MSDLSAFAVTQKWPAQFPEWIQLYSLPTPNGVKVSIMLEEIGLPYEAHRVSFETQDQMTPEFLSVSPNNKIPAILDPHGPGDQPLALFESGAILIYLADKSGQLLAQESAARYETIQWLMFQMGGIGPMFGQVGFFNKFAGREYEDKRPLERYVNEAKRLLGVLDKHLGGREWIMGERYTIADIATFPWIRNLIGFYEAGELVGIDNFPEVKRVLAKFVARPAVIRGLEIPKIS
>NC_021237.1|WP_015635076.1|2595156_2596059_+|PhzF-family-phenazine-biosynthesis-protein
MRPLSFKQVDVFSSTPLKGNPLAVVFNADELSTERMATFANWTNLSETTFLLQPRDPRADYRLRIFTTTQELPFAGHPTLGSCHAWLEAGGVPRGEEIIQECEVGLVRIRRQGDQLAFLAPPLLKAGPVEPQVLEQVRRGLRLTPGDIVQAQWVDNGAGWLAVMLGERQQVLDLQPDYPALIGLAVGVIAPCDPERDDSDAQFEVRAFIAGDGMPEDPATGSLNAGIAQWLLGAGLAPARYRVSQGLSMGRAGRIDVEQIGDEIWIGGTARTCIEGHLRLFPSSEQTCENTPSPTGPRHP
>NC_021237.1|WP_041752143.1|2596055_2596652_+|hypothetical-protein
MSALAPGDFAGTGTHKPARLLCAWAQVVSWKGWMLRAGLLGLLALDPLLCIAQTTAVKQPPGPATLPGNTPRSESAASASVAATPGDNGVAVNATCNLPVKPSAGKVVEIYWTQGPENRRVVGREADHYVDLNLIVRTVGYRPGECIEATIQSENAADEVADRIKKIVLRGKVDDTGMAYFKTPLKDYTLNLQGSEPP

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Crispr_ID: NC_021237_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021237_4

3187424-3187544

Orphan

Consensus_repeat	Method
CTGTAGGAGCTGGCTTGCCAGCGAAGGCGATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021237_4

>merge|NC_021237|4|3187424-3187544|CRISPRCasFinder
CTGTAGGAGCTGGCTTGCCAGCGAAGGCGATCTCACAGGCCCCTTCGCCGGCAAGCCGGCTCCTACGAGGCAATACGCAGCACCGGCAACTGTAGGAGCTGGCTTGCCCGCGAAGGCGATC

>NC_021237|4|4|3187424-3187544|CRISPRCasFinder
CTGTAGGAGCTGGCTTGCCAGCGAAGGCGATC	TCACAGGCCCCTTCGCCGGCAAGCCGGCTCCTACGAGGCAATACGCAGCACCGGCAA
CTGTAGGAGCTGGCTTGCCCGCGAAGGCGATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_021237.1\|WP_041752229.1\|3189240_3191190_+\|hypothetical-protein	unknown	unknown	unknown
NC_021237.1\|WP_011061120.1\|3191279_3191792_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182263
NC_021237.1\|WP_011061117.1\|3185990_3186476_+\|YbjN-domain-containing-protein	unknown	unknown	gnl\|CDD\|341122
NC_021237.1\|WP_015635484.1\|3185322_3185970_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NC_021237.1\|WP_019093945.1\|3178264_3178867_+\|transposase	unknown	unknown	gnl\|CDD\|226192
NC_021237.1\|WP_015635478.1\|3176346_3177558_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NC_021237.1\|WP_015635489.1\|3192676_3193477_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NC_021237.1\|WP_011061119.1\|3187603_3188581_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_021237.1\|WP_041752751.1\|3179007_3180576_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NC_021237.1\|WP_011061114.1\|3182853_3183570_+\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|275319
NC_021237.1\|WP_015635482.1\|3180595_3182413_+\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|227622
NC_021237.1\|WP_015635492.1\|3196148_3197822_+\|nitrite/sulfite-reductase	unknown	unknown	gnl\|CDD\|223233
NC_021237.1\|WP_011061121.1\|3191905_3192598_-\|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl\|CDD\|224707
NC_021237.1\|WP_011061113.1\|3182424_3182850_+\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NC_021237.1\|WP_011061123.1\|3193473_3194124_+\|hypothetical-protein	unknown	unknown	unknown
NC_021237.1\|WP_015635483.1\|3183610_3185305_+\|putative-porin	unknown	unknown	gnl\|CDD\|374891
NC_021237.1\|WP_015635487.1\|3188647_3189043_-\|hypothetical-protein	unknown	unknown	unknown
NC_021237.1\|WP_011061125.1\|3194453_3195881_-\|cytochrome-c-oxidase,-cbb3-type-subunit-I	unknown	unknown	gnl\|CDD\|237726
NC_021237.1\|WP_015635491.1\|3194172_3194391_-\|hypothetical-protein	unknown	unknown	unknown
NC_021237.1\|WP_041752750.1\|3177735_3177978_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_021237.1\|WP_011061117.1\|3185990_3186476_+\|YbjN-domain-containing-protein	gnl\|CDD\|341122	cd17511, YbjN_AmyR-like, YbjN protein family is structurally similar to type III secretion system chaperones. This YbjN protein family includes Escherichia coli YbjN, Erwinia amylovora AmyR, and similar proteins. YbjN proteins share a class I type III secretion chaperone (T3SC)-like fold with type III secretion system (T3SS) chaperone proteins but appear to function independently of the T3SS. YbjN is an enterobacteria-specific protein. In E. coli, it acts as a sensory transduction regulator that may play important roles in regulating bacterial multicellular behavior, metabolism, and survival under stress conditions. E. amylovora AmyR, a functionally conserved ortholog of E. coli YbjN, is a stress and virulence associated protein that regulates the ams operon. Ams proteins are required for amylovoran biosynthesis. AmyR may also regulate the Rcs phosphorelay system, an atypical two-component signal transduction (TCST) system present only in Enterobacteriaceae and positively regulates amylovoran biosynthesis by activating the ams operon transcription.	8.59536e-15
NC_021237.1\|WP_015635484.1\|3185322_3185970_+\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.000186432
NC_021237.1\|WP_011061120.1\|3191279_3191792_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182263	PRK10140, PRK10140, N-acetyltransferase.	8.00884e-41
NC_021237.1\|WP_015635478.1\|3176346_3177558_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.6803e-94
NC_021237.1\|WP_015635489.1\|3192676_3193477_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	1.96414e-23
NC_021237.1\|WP_011061119.1\|3187603_3188581_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.49654e-13
NC_021237.1\|WP_041752751.1\|3179007_3180576_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	6.54628e-103
NC_021237.1\|WP_011061114.1\|3182853_3183570_+\|energy-transducer-TonB	gnl\|CDD\|275319	TIGR04526, predic_Ig_block, putative immunoglobulin-blocking virulence protein. Members of this family are putative virulence proteins of Mycoplasma and Ureaplasma species. Members share a region of sequence similarity (see TIGR04524) with protein M, a Mycoplasma genitalium protein that binds a conserved light chain region of IgG and blocks its protective function of antigen-specific binding. The seed alignment for this model includes an N-terminal signal-anchor domain and a proline-rich linker domain, and a C-terminal extension, in addition to the protein M-like domain recognized by TIGR04524. [Cellular processes, Pathogenesis].	6.88382e-09
NC_021237.1\|WP_015635482.1\|3180595_3182413_+\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|227622	COG5306, COG5306, Uncharacterized conserved protein [Function unknown].	3.38022e-78
NC_021237.1\|WP_015635492.1\|3196148_3197822_+\|nitrite/sulfite-reductase	gnl\|CDD\|223233	COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism].	0
NC_021237.1\|WP_011061121.1\|3191905_3192598_-\|aspartate/glutamate-racemase-family-protein	gnl\|CDD\|224707	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane].	3.80112e-110
NC_021237.1\|WP_011061113.1\|3182424_3182850_+\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	3.15732e-36
NC_021237.1\|WP_015635483.1\|3183610_3185305_+\|putative-porin	gnl\|CDD\|374891	pfam16930, Porin_5, Putative porin.	0
NC_021237.1\|WP_011061125.1\|3194453_3195881_-\|cytochrome-c-oxidase,-cbb3-type-subunit-I	gnl\|CDD\|237726	PRK14488, PRK14488, cbb3-type cytochrome c oxidase subunit I; Provisional.	0
NC_021237.1\|WP_019093945.1\|3178264_3178867_+\|transposase	gnl\|CDD\|226192	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.00375e-15

>NC_021237.1|WP_011061117.1|3185990_3186476_+|YbjN-domain-containing-protein
MTLINSVTTESLTDLLQGAGYRVNQTEQNGIVQLLSASQGIGYAVRFGNPGSEAGHYVDFTYSCALRVQGELPAGLAELWNASRRFARLSLQGEFLVMEMDVVVAGVGETHLRSQLELWDRLLQEFIVYLREYSQQAAQLQAQAEAPQAAQSQPREEAATL
>NC_021237.1|WP_015635484.1|3185322_3185970_+|hypothetical-protein
MNSRARAGAASLLLVWGVLASVGASAEGMEERLRTQLRSTTQQLQALQSEQAQAAAARVAAENAAREAQAQVKQLTAELAKTRGVAEQLAGQQQSLHNQAQAQAAASSEQLGKFKKAYEDLLVLARGKEAERARLQAQLSERDTQVQQCAVKNQQMYGIAKQILAAYEKIDVAELVKIRQPFAGSARVKFEELAQGFGDELYQTQFDAPRAASTH
>NC_021237.1|WP_015635483.1|3183610_3185305_+|putative-porin
MISTVNRLTLALGMVALTLAGQATAAAAAPSENATINLIRLLVQQGVLKQEQADGLIAQAEKEAQQARAATAVAATGPAAAPGDVRVQYVPAIVRDQIRDQVKAEVMATAKQENWAQPNTFPDWISRISFDGDIRLRDESRFFADNNSNELVDYAKLNDSGPYDVNKDTNSKLPPLLNTREDRDNLFRLRARLGMKAVISPEWTAGIRIGTGSDNNPVSTTQTLGGGFGKKDIWLDQGYLTWKATQDLTLTGGRIANPFYSTDMLYSNDLNFDGVAALFNHKLSSDWGLFGTLGVFPVEYTNDTATSNGFDKNESDTKWLFGGQIGANWKINRSNSLKGALAYYRFDDIEGQRSSPCAPWAGAPGCDTDGSRVAFMQKGNSVFLLRDITPNPATPGLTPQPQFVGLASKFDVLDLNLAWDTELPDDLRLRSQTNFIRNLAYDKGEMLKRSEGEIVNNINSQGQFESGGNALMVQFTLGNALEMKKAGDWNLLAGYKYIQPDALPDGFNDSSFHLGGTNAKGYFLGGNYGIDKNIYATARYMSASEVYGPRYEVDVMQLELNTRF
>NC_021237.1|WP_011061114.1|3182853_3183570_+|energy-transducer-TonB
MSAHQPFELPPVQNKPRALRLLKWGAGLLLGAVAAWLLWQWANDMAGVRREAPKVPTIIPLPPPPPPPPPPPEKPKEPEPVEEKIPEPEPTPTPEEVKPEEEAPPSPADDLANPMQIDGDAQSGNDGFNVGAGKGGGMAGAGGGGLGTGTYKQYLAATFQRALREDPELRKKAYALQVDLWLGADGQVTRAELAGSSGNPETDQQVLAALRATPRLKERMPASLTLPVRLSLKGRRPE
>NC_021237.1|WP_011061113.1|3182424_3182850_+|biopolymer-transporter-ExbD
MASVNASHDDEDDAAVDSINITPLVDVLMVVLVMFILTATAQVSGIQIHLPKASASVSLSEAKTKAISVNDGGQVFLDAYPVTLGELEERLRIEKAQNPDFPIIVRGDATVQYQKVIEVLDLLRRLELSQVGLVTGKPSQG
>NC_021237.1|WP_015635482.1|3180595_3182413_+|MotA/TolQ/ExbB-proton-channel-family-protein
MQRLFLSLLICLGFVLPATAHAWWQDDWHYRKQISVDTTPQGAAINEALGRTALLVRLHTGNFTFDGVKEDGADLRFVAADDKTLLNHQIESFDPLMGMALIWVDVPKVEGGQRQDIWMYYGNQKAPSTANGQLTFDPSYTAIYHFDGSNGTPAKDTTAYGNTAQNATGAAIDGVIGRALQFSGQPLLLPASPSLQHNAGGAFTFSAWVRLDQASGEQLLLARREGAGSLLIGINQGMPFVEVDGQRAASTQPLNPGQWQHLALSGEGSRLALYVNGRETASLAQAIPTFNSPLAIGADLPAAAGVEAGHFQPFTGALDELRLSKVARPAALILADASAQGAESKLVVYGVDEEQSGFGFGSLGFLLKAVPVDAWVIILVLVGMMIQSWVIMLRKNRMVSRVSAANALFREQFAKVGTRLEMFADDQVLASRLEHSSLWRLYLVAVKEIRTRREQGADTSSVSAATIEAIRCSMDGVRTRENQQLSSKLSTLSNAIAGGPYIGLLGTVLGIMVVFLGTAMAGDVNINAIAPGMAAALLATAMGLFVAIPALFGYNRLITRNKEVGADMRVFVDEFITRLAELHGESQHSENAHWRVSHSNASVPA
>NC_021237.1|WP_041752751.1|3179007_3180576_+|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MTLAALVPAVQGEEGEPVPVEATAAARLVDVNEYFVRGNTVLDARAIEEAVYPFLGPQKALADIEGARDALQKVYQERGYQSVFVELPEQKVEDGIVYLQVSETKVGRVRVVGAKHYSPVEIRDQVPALKEGEVPDFATVQTQLAGLNRGAGRQVMPLVREGQRPGTMDVDLQVEDQNPWHASVGLNNDYSADTEKLRTVVNVGYDNLWQLGHSISLTYFTAPQDTDNAKVWSGSYTAPLSDRWALQFSGYQSDSNIATIGGSNVLGKGHSYGVSAIYTLPAAGSWANSLSVGVDFKDFEEEMRFGRSSDQIPLKYAPVTFGYNGYRYSEKSQLGLGLNLIIGTRRFFGYGSDAEEFQYKRDEASASFSVLKGDLNFTYTFANDWQSASKTAFQLASGPLVSNEQYSAGGSTSVRGYLAAERTGDEGYLFSQELRTPSLAKFLGSYVQEWRFYAFAEGAHLSLHDPLPEQEDQYSLASVGLGTRASLSKWLSGSLDWGYPLKDGPNTQKYDPRLHFSVQATF
>NC_021237.1|WP_019093945.1|3178264_3178867_+|transposase
MERYSKVGMQELDQRLSKIVEAARKKPVSVYRYGAPWVWIVSQDDWQGALKEVASYIPPGHSLVLLRPQIDELLDQHRDLLQGLNAEPGMLIAPRTVMHILLLQLLYSVPSEQQLYEQLSYNLLFRWFVGLDLNQKVWSFSVLSRDIATLLNNPRAVQLIQKIIGEVFCGALLQMPEFSLNFALLHTWLARHENTSISSN
>NC_021237.1|WP_041752750.1|3177735_3177978_-|hypothetical-protein
MENAPPGRGLCFISKTAPLDVLHAKGAAPLLAMTQLLESLSRAEPGNADDANLQQISNAAAIVLRDSCALLGVMGRRLQA
>NC_021237.1|WP_015635478.1|3176346_3177558_+|MFS-transporter
MTAQVFDTPAGEALGTPETGELPAYWSGIFAMTLCVFALIASEFMPVSLLTPIASDLQISEGLAGYGIAISGAFAVLTSLAISRLVGSMDRKTLLLVLTGIMCVSGLVVGLAPNYTVYMIGRALIGVVIGGFWSMSAAMAMRLVPAHSVTKALAIFNGGNALATVVAAPLGSYLGSVIGWRGAFFCLIPVAIIALIWQWISLPAMAPAPRKPGAGNVFRLFKSPLVSFGMLSVGIFFMGQFVLFTYLRPFLETVTGADVSLLSMVLLVIGVAGFVGTVLIGTFLKTGMYRVLVCIPLLMAAIALSLIVLGGKVVAAFVLLGLWGLIATAAPVGWWSWLAKALPKDAEAGGGLMVAVIQLSIALGSTLGGLLFDGSGYRMTFLASSVLLVLAAVMAFFTSRNQV
>NC_021237.1|WP_011061119.1|3187603_3188581_+|LysR-family-transcriptional-regulator
MSFLEPAPLQGFAPYTAPQEPREAWLALAAGIEPAVAQYFLVSARCGCFMQAARSLNIKATLLRKQLAQLEEHLRRSLFCYQGNALSLSREGLQLQAQLIALAHQRRLPVIEQPLIRVAVAETILHDILGRDLIALLRRNASARLEIISIDSDLSLQALSADLVLWLAAEDSPLPGPSFATREPMPLARIDYLPHIAKRYSRVAARPDSLDDLADYMLVQWQHDRHIEPFRPWNSLVEQRLAGVVQVHSYELMLEMIRCSACIGLLPQYMSRFDRGLTALPGLFEESMQRRAWLAVNAQVEHEEQVQQLVELILNTFSERQDWFV
>NC_021237.1|WP_015635487.1|3188647_3189043_-|hypothetical-protein
MFYKDDNDAFELKQRQIDAMEQALLVSRGTPRAEAAEIVAERKRLQEAYAGDPGVNPAPGVWINPEGEDLEGDVPADRQEAIKANAIAKDLLGDEFSTDTQWNITHFPDRKSSNAEVQDFWEDFTTPDSKA
>NC_021237.1|WP_041752229.1|3189240_3191190_+|hypothetical-protein
MINRIPKFHEVIELFYERAVFKRSKAPLPRQGQSLEQRQKRQQAMLDLVTRRMAEGGDDSLLTPVLRNLREIHKHLGFVALFPDKDVCATHLYFWLIVWPQLEQMFVDALENGQGSIPLRYLARCYECYGDRLFGDPVATREAILTSLEASLVQVMECLGIPQQRAQAAILQFLRRLGRLIRHDSFPGRTSVDAPVKELELALGRSQKAGAVIQHLEHLFEGVKVLHAAGRWSLPEPRPVLPDELHEVHRNLYQQARSDAAVGRRSPSLLLDRLVSIFKAQIRHVEPGEFLSQQARQVGRSKATRSLIEHNAGQLHAYVLLEQIKSDLHVGRRLQRVENSVQVLVGISGSDRECWQAFFQDISLSLFLLNAIFSSALTLIQRLFGEEAFAEAALILRRLVEAEQTEGQQRERLLAVAAREQISALKALLDSYHAQHHLGWLSMELLAFIYAFKYNYDPGFQPHATDKLEAILDDCVDQRDIRHRIVYETQFGRCTRTLSPAGADVALIMIHQYNRYILAHCEYPLEYLCNPLQRLSEILQRSLSAASAGGEIEAATLKRCINAEFGTGKSKSVMRIGGLRPYECLRDVGFYLSALHLEKQEALNPGLFLYLALSDALQHQVLQLLSPASYAEDLRRQQARSPESPDQGF
>NC_021237.1|WP_011061120.1|3191279_3191792_+|GNAT-family-N-acetyltransferase
MPNAHPTIVIERCNEAHIDGLTALYSEPSVAAQTLQLPYQSRELWRKRVGLGQENEGLVALVALHQGAVIGSCSLLQVARVRRAHCADIGMGVSPAWQRQGIGSRLLAAVLEVADNWMNLRRVELTVYADNQAAIGLYRKFGFETEGQLRDYAVRDGGYVDVLSMARLRR
>NC_021237.1|WP_011061121.1|3191905_3192598_-|aspartate/glutamate-racemase-family-protein
MRTIGLIGGMSWESSAEYYRLINQQVRDRLGPLRSARLLMYSVDFGPVEQAQHAGRWDDAAAILVEAARRLEAGGAECVVLCTNTMHKVAGQIEAAIGVPFVHIADPVVQAAQAAGTLSVGLLGTAFTMEQAFLKGRLEDQGLKVLVPDAAQRQAVHRIIYEELCVGVVSESSRRLYQHVIDGLQARGAEAIILGCTEIGLLLKPEHSALPLLDTTELHARAAVDFALLE
>NC_021237.1|WP_015635489.1|3192676_3193477_+|helix-turn-helix-transcriptional-regulator
MPQVLEHRLLDGRLLLQLLPAAAYSARDPAQWQTLGVTLERQRGVHAIDSDRREDFDTWPGTLALTPAGIEVFSESAMGGEYLLLRWQGATPLVPGQRRMQSPGHARALALGREARRLLLAPEADELALEQCALAFLGLAQPGRAAPARAPELGQVLQQMADEYARPLSLAQLALTYGHNELRLLRDFRRAVGITPHAWITEVRLQAARRLLEHTDLPLAAVAQDCGFAHQSHLGSALRQTIGLTPRQYRLQFQRRAADTLVTPRQ
>NC_021237.1|WP_011061123.1|3193473_3194124_+|hypothetical-protein
MIVASGPQDHHRWAQLQGSASRRANNSTPDTGICHAQGRRPAVLKGRSQGHSTMDDIQQLGEMLRHYAASEAHKKQLFDSQSVVWARRIHQLFGQIEDWLAPVLLPDLLALQREPYVAFSPAVPLEVSTFKSEKLTIHIAGKPVEFVPDVMGPQGQISLAVIGLTAARLGSVSLVGEASGGWQWRKTNGLKDPDVFAFDGNFLAAQLQSLIPRERA
>NC_021237.1|WP_015635491.1|3194172_3194391_-|hypothetical-protein
MDILLNLLGVAFLYLCIEYCLRHQSAKSLDDASLIPFADDPDVARRVELATGKKINAVTPEEAKPGWINLDM
>NC_021237.1|WP_011061125.1|3194453_3195881_-|cytochrome-c-oxidase,-cbb3-type-subunit-I
MNSATIGQAYNYKVVRQFVVATVVWGVIGMAMGVWIASQLVWPEMNLDLPWSTFGRLRPLHTSLVIFGFAGSAQFAASYYAVQRTCQVRLYSDTLAAFTFWGWQSVIVIMLITLPLGYTTTKEYAEIEFAGAVWMAVVWVAYAIVFFTTVVRRKSQHIYVGNWFFGAFILVIAMLHVVNHLSIPVDWFKSYPVYSGATDAMVQWWYGHNAVGFFLTTGFLGMMYYFVPKQVGRPVYSYRLSIVHFWALITLYIWAGPHHLHYTALPDWAQSLGMAMSLILLAPSWGGMINGMMTLSGAWHKLRTDPILRFLVLSLAFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHAGALGWVAMITFGAIYHMVPKVFGREQMYSVPLINLHFWLATIGTVLYIASMWVNGITQGLMWRAVNEDGTLTYSFVEALVASHPGFVVRFAGGVFFLSGMLLMAYNTWRTVRVADERLALSDARIA
>NC_021237.1|WP_015635492.1|3196148_3197822_+|nitrite/sulfite-reductase
MYQYDDYDRALVLERVAQFRDQVERFMGGQLSEEEFLPLRLQNGLYMQKHAYMLRVAIPYGTLSARQMRTLASIARDFDRGYGHFTTRQNLQFNWIELAQVPDILQRLAEVEMHAIQTSGNCVRNITTEAFAGVAADEYLDPRPLAEILRQWSTINPEFLFLPRKFKIAICSAKQDRAAIMMHDIGLYLYRARSGEMLLRVIVGGGLGRTPILGLQIRDGLPWQHLLSYVEAVLRVYNRYGRRDNKYKARIKILVKALGIEAFAKEVEEEWQHLKDGPAQLTEDEFQRVASAFVPPIYERLADTDLDYGSHLAESPAFARWVARNVHPHKVPGYTCVVLSTKPGPSSPPGDVTGQQMDAVADWSERFGFGEIRIAHEQNIVLPDVPKSQLFELWQCASEHGLGTANAGLLTDIIACPGGDFCALANARSLPITLAIQQRFEDLDYLHDLGDISLNISGCMNACGHHHIGNIGILGVDKNGSEWFQVTLGGAKGRDSALGKVIGPSFSAEEIPEVIERIIATFVRYRESDEPFVETLQRIGLEPFKERVYPKAMEALA

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Crispr_ID: NC_021237_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021237_5

3563803-3563958

Orphan

Consensus_repeat	Method
TTCGCCGGCAAGCCGGCTCCTACGGATCAGGCCGATACACACGCCCCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021237_5

>merge|NC_021237|5|3563803-3563958|CRISPRCasFinder
TTCGCCGGCAAGCCGGCTCCTACGGATCAGGCCGATACACACGCCCCTGTAGAAGCTGGCTTGCCAGCGAAGGCATTGCCAAGACCGGCGCCAGGCTCAAGGGCCCTTTCGCCGGCAAGCCGGCTCCTACGGATCAGGTCGATACACACGCCCCTG

>NC_021237|5|5|3563803-3563958|CRISPRCasFinder
TTCGCCGGCAAGCCGGCTCCTACGGATCAGGCCGATACACACGCCCCTG	TAGAAGCTGGCTTGCCAGCGAAGGCATTGCCAAGACCGGCGCCAGGCTCAAGGGCCCT
TTCGCCGGCAAGCCGGCTCCTACGGATCAGGTCGATACACACGCCCCTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_021237.1\|WP_015635729.1\|3565479_3567261_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_021237.1\|WP_015635726.1\|3562361_3563417_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NC_021237.1\|WP_015635736.1\|3578570_3579338_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NC_021237.1\|WP_015635721.1\|3554919_3556707_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
NC_021237.1\|WP_015635725.1\|3561617_3562346_-\|class-II-aldolase/adducin-family-protein	unknown	unknown	gnl\|CDD\|214970
NC_021237.1\|WP_015635723.1\|3557572_3558634_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NC_021237.1\|WP_011061445.1\|3553405_3553867_+\|LEA-type-2-family-protein	unknown	unknown	gnl\|CDD\|214812
NC_021237.1\|WP_041752276.1\|3556703_3557603_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NC_021237.1\|WP_015635728.1\|3563989_3565237_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|274924
NC_021237.1\|WP_011061451.1\|3560208_3561408_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274652
NC_021237.1\|WP_011061446.1\|3553867_3554776_-\|glutaminase-B	unknown	unknown	gnl\|CDD\|234880
NC_021237.1\|WP_015635731.1\|3569432_3570590_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274652
NC_021237.1\|WP_015635734.1\|3573154_3575425_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|224544
NC_021237.1\|WP_011061460.1\|3571699_3572758_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NC_021237.1\|WP_015635737.1\|3579348_3580110_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NC_021237.1\|WP_015635724.1\|3558626_3560198_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173868
NC_021237.1\|WP_015635732.1\|3570609_3571662_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NC_021237.1\|WP_015635735.1\|3575615_3578087_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_021237.1\|WP_011061444.1\|3551797_3553237_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NC_021237.1\|WP_015635730.1\|3567253_3569161_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055

Protein	Function_ID	Function_description	E-value
NC_021237.1\|WP_015635729.1\|3565479_3567261_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.89293e-122
NC_021237.1\|WP_015635726.1\|3562361_3563417_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	6.42833e-27
NC_021237.1\|WP_015635736.1\|3578570_3579338_+\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	3.86762e-64
NC_021237.1\|WP_015635721.1\|3554919_3556707_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
NC_021237.1\|WP_015635725.1\|3561617_3562346_-\|class-II-aldolase/adducin-family-protein	gnl\|CDD\|214970	smart01007, Aldolase_II, Class II Aldolase and Adducin N-terminal domain. This family includes class II aldolases and adducins which have not been ascribed any enzymatic function.	4.56929e-12
NC_021237.1\|WP_015635723.1\|3557572_3558634_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.84443e-91
NC_021237.1\|WP_011061445.1\|3553405_3553867_+\|LEA-type-2-family-protein	gnl\|CDD\|214812	smart00769, WHy, Water Stress and Hypersensitive response.	3.41777e-29
NC_021237.1\|WP_041752276.1\|3556703_3557603_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.98349e-64
NC_021237.1\|WP_015635728.1\|3563989_3565237_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|274924	TIGR04022, Acyl-CoA_dehydrogenase_type_2_domain, sulfur acquisition oxidoreductase, SfnB family. Members of this protein family belong to the greater family of acyl-CoA dehydrogenases. This family includes the sulfate starvation induced protein SfnB of Pseudomonas putida strain DS1, which is both encoded nearby to and phylogenetically closely correlated with the dimethyl sulphone monooxygenase SfnG. This family shows considerable sequence similarity to the Rhodococcus dibenzothiophene desulfurization enzyme DszC, although that enzyme falls outside of the scope of this family. [Central intermediary metabolism, Sulfur metabolism].	1.26207e-130
NC_021237.1\|WP_011061451.1\|3560208_3561408_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274652	TIGR03565, alk_sulf_monoox, alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes. [Central intermediary metabolism, Sulfur metabolism].	8.07108e-96
NC_021237.1\|WP_011061446.1\|3553867_3554776_-\|glutaminase-B	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	0
NC_021237.1\|WP_015635731.1\|3569432_3570590_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274652	TIGR03565, alk_sulf_monoox, alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes. [Central intermediary metabolism, Sulfur metabolism].	6.03785e-105
NC_021237.1\|WP_015635734.1\|3573154_3575425_+\|TonB-dependent-receptor	gnl\|CDD\|224544	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism].	1.05705e-50
NC_021237.1\|WP_011061460.1\|3571699_3572758_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	2.20564e-28
NC_021237.1\|WP_015635737.1\|3579348_3580110_+\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	2.59824e-59
NC_021237.1\|WP_015635724.1\|3558626_3560198_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173868	cd08503, PBP2_NikA_DppA_OppA_like_17, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	3.17916e-168
NC_021237.1\|WP_015635732.1\|3570609_3571662_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	2.49967e-24
NC_021237.1\|WP_015635735.1\|3575615_3578087_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.17312e-67
NC_021237.1\|WP_011061444.1\|3551797_3553237_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	8.00921e-145
NC_021237.1\|WP_015635730.1\|3567253_3569161_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.84159e-153

>NC_021237.1|WP_015635726.1|3562361_3563417_-|ABC-transporter-substrate-binding-protein
MTLAATLPTSAAQPELEQIWFTRCPVPTASGIAYKLGWLSEEFAADGLPVATLQEARQLGHHHYDHQLPGLFREGGNVPALAARAAGSPSRLIGLTWIEEWQTLLVRPDSGISRPEHLKGKRLALPAWGENRPGSIARAMSLHGYKGALSLAGLGFDDVELVEVALQDQERAATPQEGLQRLWSGLDYLVRGEVDAVYVKGAAAADAARRLGLVVGIDLDLVAEPRYRINNGTPRPITVHQSLLDNHFDLVVRFLAQTLRAADWAAHNRPALNAILEEETRAGSAGVNEAYRGDFHTTLAPDLSPQRLEFLDIQKNFLYRHGFLERDFAIADWVDRRPLHAAHELLAQRRA
>NC_021237.1|WP_015635725.1|3561617_3562346_-|class-II-aldolase/adducin-family-protein
MTVLINEQPITQELQAFIDQVQLEAEQAFTVFRETQTITANGTVGFIERVPGQELLVSVNYGGPWNYRKPLQATVTDFAGKVILGQGKGGLGRYTKLFQQHSDITTVSHVHSPYLGAWAQTHRTLPFHYVPVQRYQLARELPVYIDRRQPEVDFILDSIAQNPFNLAILEANGGSTVWGKQGLRATAEFILLLEEGAQLQLLADALGGSRPYGPGVLTQQWKMSGLYERATELGLVPAIDRR
>NC_021237.1|WP_011061451.1|3560208_3561408_-|LLM-class-flavin-dependent-oxidoreductase
MAVKILWYLTTPDGPYPWEPEGRWNTDFQHLKQLAVASDRLGYYGSLLGSSPNESLAVSAALIDATQRLRFLVAQHPGELSPAVLAKWALTFDQFSNGRLLFNVVNGSDAGLATLGVHYPHDERYDFSLEYWRAFQGFYAGDTDGYDGRYVKLAPRSPAAAGHPLGGWHAPRQRPGIPLWGAGTSGPGVAHSVQLLDVYLSFADTPPKLGEKFRKVAAEAAKIGRELSFGTRLQIIVRETEEEAWAHAEKLLQRTSLQTARASIERQLPPGETLDSFHSDDPQIQRNVEAIRAGRLPKARDLEIYPNVWLGPSLFGFNILGPAAGTYLVGSARQVAERIREYEEQGTSAFILSGFPLIDEAHRVADLLFPLLELDHGFEVPRLGATLAARQPAKATEQA
>NC_021237.1|WP_015635724.1|3558626_3560198_-|ABC-transporter-substrate-binding-protein
MSEAFSRRVFLGHSLAAGGGLLLGSSLLSGCDNGAAPGAAPLLPGTPVRGGRLRVGIIDGDQSGNLDAHKPVGGGIIRGWALYSKFWEWNPDVSTRLALAEFAEPNADASVWTIRIKPGLEFHHGKSIGADDMLFSILRLTDPQLASPFAGLVGAIDRQALRKLDQRTIEIRFKQGQSFFPLDETLISFGAIVPTDYHPQTNPVGAGPYRLKRFIPGQRSLYSRFENYYKPGQPYADELEIIEFKDQVSRAAALRAGQIDVASGVQAEHSALLKADPRLRFYASPSTSFTGFNLNLAKAPFQDVRVRQAFRLLADRQELVDRGLNGFGRVANDLYSPHDPTYNHGIAQRPHDLEQARSLLRQAGHSDLRVELTTTPGPGVNAALVFAQQAKRAGVEVKVTQVDASVFNGPQREQWLLSPGATPARGFLASALHNDAPQAIYNRSNFHDPRFTQLYQQALAQPDLQLRRQWVHEAQAIQHQRGGLLIWGFNDVLDAASVRVGGLVPEQTTFASWRFDEMWLNHA
>NC_021237.1|WP_015635723.1|3557572_3558634_-|ABC-transporter-permease
MPDTCRNTPRTPAWLSWFVGRLGYGLLTAWVISLVVFIATQALPSDPARVILGPDAPLESILTLQRQLGLDRPLLEQYLHWLGQTLEGDLGQSLDSSAPVADVLFARLGYTLALLAGVIALVVPAALLLGVTLALRRDSRLDRWSLSLLIFLKATPGFLLAIGLVLLFSMPHMDLLPAVSILDPQLALWRQLQFLVLPVLALSLSALPYLTRMVRAAMIEALESDYVIAARLRGIPEWRIVWRHTLANALVPAVQGLALTLRTLIGGALLAEVVFSYPGIGTALNSAIQMRDLPMIQAIVLVITLGVVLINLLADLATVLLTPKLRTARRAGLIRRNRRGLQPWWRRSAPKAP
>NC_021237.1|WP_041752276.1|3556703_3557603_-|ABC-transporter-permease
MAPLGAQGSLNLRHENLSMNDIRISRWRLWLGEPQTRKGAFITLLVVLLALFGPWLAPHGSTDMLGPVYGTPAAGAWLGHDFLGHDVLSRLLSGGLSVLWMSLAAASIALLVGSALGLLAGLSRRRLDTLISWLADVSLAFPDLILVLLIVSMLGRAPWLIVLTVAIAFTPGVVRLARGSAVAVAGQEFVEAAQMMGYSRWRILSGEILPNILTPLLVHFGNMLTWGVGMLSGLSFLGYGVAPPAADWGLMINENQAGLLVQPWAVLAPALLIGVFAYGTNILAEGIGRSQARIGEKGP
>NC_021237.1|WP_015635721.1|3554919_3556707_-|ABC-transporter-ATP-binding-protein
MNAVVEVTREARVLQVEGLRVELAGGVEVLSGVGFSLAAGEILGLVGESGSGKTTLATALLAHARRGARIVEGRVEVAGQSLLDLSAQNLRRARGGLIGYVAQDPATALNPALRIADLLEETLAVHPSHLDRHGRQQRIRDTLKDVGLPADREFLRRFPHQLSGGQQQRVMLALAFVLRPRLIVLDEPTTALDVTTQAHILGTLRHLCKSLGVAAIYVSHDLAVIKDLVDRVLVMYAGRIVESASREALFRQPAHPYTRGLLAAIPDVGQRRPLLAIPGQAPAPGQRPAGCAFAPRCPRQGAQCTAGEPLLQGLAADVQVACIDPYRQALPMPPVVAVQAAVSGSERRPLLEVQGLNLAYDRQVLFDVSLQVVAGECLALVGESGSGKTSLARALAGLGEHAEGRVRYAGQPLSLSARQRSKGLRHQIQYIFQNPYRALNPRHTLYQTLSAPLEHFFGIQGAEARARVHAVLQRVSLSPALADHYPHSLSGGERQRVAIARALVCEPKLLICDEVTSALDVSVQASILALLRQLQDEGMTLLFVTHDLGVVRAIADRVLVLKQGRVVEQGAVDAVLDRPEHIYTRTLLENSPRLG
>NC_021237.1|WP_011061446.1|3553867_3554776_-|glutaminase-B
MQDLLNQILDEVRPLIGQGQVANYIPALADVPANQLGIAVYGNDGQVFSAGDADTPFSVQSISKVFSLVQAIGHSGEAIWERLGHEPSGQPFNSLVQLEFERGRPRNPFINAGALVICDINQSRFAAPALSMRDFVRRLSGNLQVMVDGRVAESEYQHRARNAAMAYLMQSFGNFHNDVEAVLRSYFSHCALRMSCVDLARAFCFLANDGFCKHSGEQILTRRQTQQVNSIMATSGLYDEAGNFAYRVGLPGKSGVGGGIVAVVPGQFTVCVWSPELNSAGNSLVGMAALELLSQRIGWSVF
>NC_021237.1|WP_011061445.1|3553405_3553867_+|LEA-type-2-family-protein
MRRLIALTLVLLSLSACALLPNRDPLAINVVGIEPLPSQDLEMRFAVKLRLQNPNESPIDYNGVALDLEVNGRPLASGVSDQQGHIGRYSEDILVIPVSVSAFSVLRQTLGLSQTQSLDNLPYVLRGKLAGGLFGTQRFIDRGQLSLSNPGAW
>NC_021237.1|WP_011061444.1|3551797_3553237_+|purine-permease
MTAPDRSPPRYKSDLIYGLNDRPHFSAAIFAALQHVLASFVGIISPTLIFGGVLGLESELPYLISMALFVSGLGTFVQARRLGPIGSGLLCVQGTSFSFISVLLSAGFMVKGRGGDTNEILSTIFGICFVAAFIEMFLSQFIGKLRKLITPVVTGTIITLMGLSLIKVAVTDMAGGYGASDLGAASNLGLAALVLLTIVVLNRFNHPMLRLGSIVIGLTLGFVVAWMLGRVDMAAMPEVPLVSVPVPFKYGFSFDLIAFIPLAVIFLISPLEAAGDLTANSMISQQPVKGPLYIKRIKSGLLADGFNSAVAAVFNSLPMVTFAQNNGVIQLTGVASRYVAYFIAGLLVLLGLFPVIGAVLQLMPKPVLGGATLIMFGTVAVAGIKILAEAGLHRRNVLIVAISLGMGLGVAAVPEVLRELPKALHNIFESPITVGAFCAIFLNIFLPEEFLELEEDEFDPEAATLKVMQDPDMSGKANS
>NC_021237.1|WP_015635728.1|3563989_3565237_+|acyl-CoA-dehydrogenase-family-protein
MSSVQALPVTPVRVLGSEAEAIAVAREIATEIAAIAADSQANGQLPRRQAQLLSDSGLTAIGVPKAFGGLGASVATIVETVRLISVADGGVGQLLQIHNVMLRGIFNGYPDAVRDRVVSDVLAGKRLGNALAEIGGKNKFALKTRIERRADGKLILNGSKFYSTGSYLAEWISLTAASEEGGAGVLLNRNAPGLTLVDDWHAFGQQNSVSGTVLFDNIELDEDFVSPRKGPMKRTGLTFPQILHAAIDTGIAAGALGAAVDYLKQHARPWVESGVDHASEEPHIIKQIGEYAVALRAAESLLRDAARVFDEHEQDPDNKELQDQLILSVATARAHSDSASLKISSDIFSLLGASSSLSKWNLDRFWRNARVHTTHDPIRWRLHHVGNYYLNCVDPGEYTAILNAKEQQGATRPAP
>NC_021237.1|WP_015635729.1|3565479_3567261_+|ABC-transporter-ATP-binding-protein
MIEKHPLLRALAIYREVPWRFTLVALLYVAVNLGLVWQQWLIGHAVNDVSSGQAVKHLADGSLDASLGWYWLWLLLAVALGRGLLQYAATVLSLVLSQELLTRLRERILQQVQGLHLGYHWQHGMGEMITRTTRDADKVRDALISFWRQVVETPLVVLATVGLLAWYSPWLAVVPLLLTACGLWIFVRQTEHLVSLDRAVGAAYDRVNQDLSEGIGGVRVIKSFALEHSRIQGFAAQVGLFAEHARRALAYSSSRIPLPQAVVALSHVWILVYGAHQVAARQLGIGELVSALLIVTTLVFRIEGIGRVMQTFADARSSAERIWQLLDEPLHIRSGNARLPQAPLGLRLEGVSVSAPGGGRKILDDCSLSLEPGEVVALVGATGTGKSLLASLLPRLTEAGAGRVLLGSELSGWQDVRDLDLQQLRRRVHVVPQESFLFSDTLAANLRLTAPDASHRQLRQGLALAAAEDVLERLPQGLDSRLGDRGVTLSGGQRQRLSLARALLGEPDILCLDDATSALDAISERQVLDNIRQLRRDQGRATTLLVISSKLSTILLADRVLLLQDGRIRASGRHAELLKTNAHYRDLLGVDHG
>NC_021237.1|WP_015635730.1|3567253_3569161_+|ABC-transporter-ATP-binding-protein
MANPIAGKALSDIEIEEMLARQALDRSMLSRLLPLLRPIRGPILTVIGIELLLVFTVFLRPWFVRELLDRGLVPDQGHWLLDESLVLWLGLGLAASWLGRFVLAGLSQFVAGSAAIRVLNDLRVKVFAHIQALSVSYFDQTRAGRIISRADRDVDSLEPLLIQGPPELLGALLRCGLAALMLWRIDPRFFLSLAATVPLLALATWGFKRISQRNWARVAENRSRFTAHLVESVSGARMLQQCGQQEPNLQRYRGLLDDFNQALIRGSLRSSWFAPFTALLSTAGMAALLLVGGYGLADNQISVGQMAESLFYVFLFLGPLQELSDLFERYATGSASAQRIFLLLDTRPQVLDPAQPQRMQRARGEVGFEQVRFAYDPRSKSAVIQNLDLQIKAGEVLAIVGPSGHGKSTLVQLLTRFYDVQGGAVTLDGVDIRHLAQHDLRRAVGVVLQDNVLFSGTILDNLRLAAPGADDATLIAAARELGADEVLERLPHQYHSEVGPLGGHLSHGQRQLVCLVRAYLANPAVLVLDEATSAVDIHTERRIQRALRRLCQGRTAIIIAHRLATIRDADRIAVIRHGQLVEQGPHQQLIRQNGAYAALYQAYLRSADQPGGASPAAPFAGKPAPTQAPPVSRQL
>NC_021237.1|WP_015635731.1|3569432_3570590_+|LLM-class-flavin-dependent-oxidoreductase
MSTEFFWRLPLGTDGPQLSTDKHNRGNPHPRAGHIAPGRLANGEPDGFTYIDYIAQVAKAAELAGFEGALLPTGPEPWVVAAALARETRRIRFLIAFQATWTLPAYAAQQAAILQNLSHGRLDWNIITGGNPVSQRANGDYLDHDRRYQRTGEFLDIIQGLWQNERFSYDGDIYQLENGALPPGLQQERKPGVYFSGFSDAALDVAARHADVYLNWAEPIDQLKPHIERVRELADKQGRTVRFGLRVDLFARETEEQAWADLRRQFDKLEGKGSLIAKNFTSGSDSVGAARQTAYHQNVDRFDDLILGPNLWAGFAKAKPGPTVGLVGSHQNVAERLAEYRDAGFSTFILAGNPHLEEALRIGQEVLPLVHQRPVAQATPLQARA
>NC_021237.1|WP_015635732.1|3570609_3571662_+|ABC-transporter-substrate-binding-protein
MSHPLDTLWYTRCPVPTGLGIAVQKGWLQDSLGALGTQVQSLRESSDQAVRESHFDHSLRNSVRHGGSIPALWARAQGRETRLIGLSWADEVQLILTRADSGIHRIKELKGRRFGLPDWAGAQIDFTRAQALRGLENALGLDGLQVGDLQLVNYRYGGTFSDPQVQTLADTPVSAQPSSGRNLELQGLLRGEVDAIFLKGASAARHAHEFGLRTLIDTGAHPDPLIRCNNGTPRTLTVDSHLLEQHLDVATGILGAVLRAEDWARHHPEDTRRYLARETNSSEYWISAAYGEDAHLRLGTGLEEQAIDALQDFSAFLRRWRFIPQQVDVRQWIDRRPLDALLATPTALAG
>NC_021237.1|WP_011061460.1|3571699_3572758_+|ABC-transporter-substrate-binding-protein
MSKSLDTLWYTHSPVPTGLGIAVQSGRLAEAFLPFGTNIQSLRESSEREVREAHYDHHLQNSVRHGGNIPAIWAYSSGVQTRVLGLSWSDEVQLILTTAESGVKSIRDLKNRRFGLPKWANVQIDFTRAQALRGLENALRLEGLEVADVELVDYPYGGTYSDEQKQHLYGSEVSLGVTRFSRRNNELIGLLRGDIDAIFLKGAHAVHLANEFGLQVVVDTGSHPDPLIRSNNGTPRTLTVDTHLLREHFDASVKIVDTVLRTEQWAWANPEETRRFLARELNTSEYWVAAAYGEDAHRRLRTTLDARSIEALQDFTDFLHRWQFIPRRFDVREWIDFSVLETVIGSTSRVAV
>NC_021237.1|WP_015635734.1|3573154_3575425_+|TonB-dependent-receptor
MHKLNPITKSLWLALALTGGTFSQGLLAAETTDTDTTGNSSEPALKTVTVTAQHREETLQEVPVAVSAVQGTSLVTDGVRNMGDITTFIPNASAKNPDGDGRPRWYIRGLGTGDTGAATVFPVGIYADDVYLNAPIAGGGPLFDLERIEILRGPQGTLYGKNTTAGAVNVISKKPTFDTDGYGTLGIGSKSERILNGAIGGALVDDRLAARLSLYSEERDGFQKNLTDDHTYGDVDKKAVRLQFLARLNPDLDALLKIHAREYKGDGSNGSLPVGRYYNVGYQRPDGRNIALNVNEDAKLDHDGTSLTLNWHLGDYTLTSISAYDYIRGQSTSDADYTPYEVNGAAISDNRYNQYSQELRLASPQQETLRWLAGVHYFHEDLDSSAKRLITPGPTPNGTGSNQTGGATDFRDLNYQHTTDSYALFGNLTYDFTDNFTVTGGLRWTQEKKDIDLDLTQLTRATANGPLIPLGAAGSNGSRDESKTWEAWTYDLTPEYRINDNVRVFLRYAHGFRSGGFNTGLSTSLAQLTTVDPEKLDAYEIGLKSEWFNHRLTANANVFYYDYSDIQVNLLTVNNGVLTTALTNGAKGKVKGAELELEGQPTDYLHLRAAISFLDTEYTDFKNTNPNTGAVTGDYSGNSFVRSPRNVVSLGADYTIPLEIGGKLVAGGDVSFRDKEYFLADRQSSADKTLSQPHYTLANTRLTWFSPDEKLSVTGFVNNLTDRRYQVHGRPNGTLGQYVITYGDPRTVGLSVTSRF
>NC_021237.1|WP_015635735.1|3575615_3578087_+|TonB-dependent-receptor
MFHRNPLAGAVALVVGSLAVPAFAAQTSSNAPGASADHLDTVVVLGTRRSDVTALESAAPVDVLSAQQLQQTGASDLSGALTALSPSFSYPQSPQGAFAGSIAQGASLRGLASDQVLVLVNGKRRHTSANVTRQSLVNGRGAAAVDLSLIPLSAIERVEILRDGAAAQYGSDAIAGVINIVLKEKDDGGNVGYRFGGYDKGDGLQRKLSGWKGLSLPNDGFLTLSFDAGSQDPASDTNPDNRIFYPGSTSTQTPREQNNRYRTWRWGSGNVSDQYNFAANSEFGLGEGLTAYGFATYSHKNTDAEGFFDPPTTLRNNYGSDALQRYPDGRLPITRYSLEDYALTGGLRYEDERLGKFDLALNHGDNSLKSADRNAINPSWGEASPAKIYTGKREADQTNLTLDWVRDFPTDLLFKPLTLSAGLAWRQENYELSAGEAAGWQNGPLFNTVDPVTGRRIPGYYSGITQVDAATLERKVWGAYIDVEGQVTEKFQAGVAVRTEHYSDFGDTTNGKLSLRYDFTPQLAARATASTGYRAPSLVQSGLSSFSVQVVEQPPGSGNYVEVQQRTLRADSPEAKLLGGKALKPEESTNYSLGLVWRPLANASVTLDAYRINIDNRITLSDQLPASVVTPIFAGTPYANIQSAAFYTNVADTRTDGVELTGNYQLDLQQWGRLNLSSGYSQNNTRITALRDVGNIAGSQIVGRTTQGLIEDGTPKNKLTLSANWLYDSWGLTLAQRRYGQWKSLNASNPTLDQTFSAQWVTDLDISYHFDKALKLSVGAINLFDTHPDKASGAQLYGVPKYSITSPEGAQGAFYYTSVSYDF
>NC_021237.1|WP_015635736.1|3578570_3579338_+|ABC-transporter-permease
MAHSLRCTLTTLTWLVSPLALLLLWTLVAQAGIFPRNLLVPPAQVLHTFETLLASGELLEHLHNSLSRLGLGFALGALGGLVFGVLMALSKTVEAYCAPLFHTLRQIPSIALIPMFVLLLGIDETFKIVIVAKTAFFPVALAASEGVKAIPRSYFEVADVYRLRWPTLVRQIALPAAAPPIITGLRIGLTRCWVVLVATELLAADSGLGQMIEMARQMLRIDVVMVGIVVTGVIGFALDFSFRRLEQRVLRWQTR
>NC_021237.1|WP_015635737.1|3579348_3580110_+|ABC-transporter-permease
MTTLLAKFRGLLLPLLLIGGWEYLSRQDAAGAYAFVPLSTIASALLELLGNGELPVNLLASLGRASGGLLLGTLAGVMLGALMALSTLANRLIGPLFHSIRQVPMLGWIPLIAMWFGNGEFSKMLIVSLAAFYPMVLNTYQGFCQVERRYREVGQVLVLNPAQRLRHILLPAALPSIATGLLQALAFAWVTAVGSELFLSSGAGLGNLMMNAEAGSRMEVIVLCVLCIGLCGYLMTLLLTLLSRRLLRWRPTR

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Crispr_ID: NC_021237_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021237_6

4169885-4170047

Orphan

Consensus_repeat	Method
GTAGGAGCCGGCTTGCCGGCGAAGAGGCCCTCGGGCCTTGTGCAAATCTTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021237_6

>merge|NC_021237|6|4169885-4170047|CRISPRCasFinder
GTAGGAGCCGGCTTGCCGGCGAAGAGGCCCTCGGGCCTTGTGCAAATCTTGCGATCGCCTTCGCTGGCAAGCCAGCTCCTACAGCAGACGCCCGTAAACGAAGCACTCCCTGTAGGAGCCGGCTTGCCGGCGAAGAGGCCCTCGGGCCTTGTGCAAAGCTTGC

>NC_021237|6|6|4169885-4170047|CRISPRCasFinder
GTAGGAGCCGGCTTGCCGGCGAAGAGGCCCTCGGGCCTTGTGCAAATCTTGC	GATCGCCTTCGCTGGCAAGCCAGCTCCTACAGCAGACGCCCGTAAACGAAGCACTCCCT
GTAGGAGCCGGCTTGCCGGCGAAGAGGCCCTCGGGCCTTGTGCAAAGCTTGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_021237.1\|WP_015636091.1\|4177883_4180511_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367389
NC_021237.1\|WP_015636094.1\|4182258_4183461_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380668
NC_021237.1\|WP_011061942.1\|4169314_4169809_+\|DUF934-domain-containing-protein	unknown	unknown	gnl\|CDD\|226272
NC_021237.1\|WP_015636089.1\|4172697_4174425_+\|hydrogenase-maturation-factor-HoxX	unknown	unknown	gnl\|CDD\|187719
NC_021237.1\|WP_015636082.1\|4159465_4161757_-\|fatty-acid-cis/trans-isomerase	unknown	unknown	gnl\|CDD\|369142
NC_021237.1\|WP_011061934.1\|4157200_4157614_+\|cobalamin-biosynthesis-protein	unknown	unknown	gnl\|CDD\|376648
NC_021237.1\|WP_015636090.1\|4174611_4177893_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|277345
NC_021237.1\|WP_041752350.1\|4156502_4157204_+\|CbtA-family-protein	unknown	unknown	gnl\|CDD\|227733
NC_021237.1\|WP_011061941.1\|4167672_4169331_+\|nitrite/sulfite-reductase	unknown	unknown	gnl\|CDD\|223233
NC_021237.1\|WP_011061945.1\|4172121_4172436_+\|SCP2-sterol-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225794
NC_021237.1\|WP_015636084.1\|4165761_4165983_+\|DUF2970-domain-containing-protein	unknown	unknown	gnl\|CDD\|378581
NC_021237.1\|WP_015636081.1\|4157697_4158444_+\|precorrin-4-C(11)-methyltransferase	unknown	unknown	gnl\|CDD\|225430
NC_021237.1\|WP_015636087.1\|4170121_4171156_-\|protease-SohB	unknown	unknown	gnl\|CDD\|236978
NC_021237.1\|WP_015636092.1\|4180708_4180987_+\|hypothetical-protein	unknown	unknown	unknown
NC_021237.1\|WP_015636085.1\|4165990_4167076_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380547
NC_021237.1\|WP_041752352.1\|4171359_4172070_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NC_021237.1\|WP_011061936.1\|4158738_4159323_-\|Fe-S-biogenesis-protein-NfuA	unknown	unknown	gnl\|CDD\|132384
NC_021237.1\|WP_015636083.1\|4161911_4165622_+\|methionine-synthase	unknown	unknown	gnl\|CDD\|236539
NC_021237.1\|WP_015636093.1\|4181385_4182156_+\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NC_021237.1\|WP_011061951.1\|4183531_4184392_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119324

Protein	Function_ID	Function_description	E-value
NC_021237.1\|WP_015636091.1\|4177883_4180511_-\|hypothetical-protein	gnl\|CDD\|367389	pfam03200, Glyco_hydro_63, Glycosyl hydrolase family 63 C-terminal domain. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63. They catalyze the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase EC:3.2.1.106 is the first enzyme in the N-linked oligosaccharide processing pathway. This family represents the C-terminal catalytic domain.	4.88658e-09
NC_021237.1\|WP_015636094.1\|4182258_4183461_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380668	cd20378, PBP1_SBP-like, periplasmic substrate-binding domain of active transport proteins. Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.	0
NC_021237.1\|WP_011061942.1\|4169314_4169809_+\|DUF934-domain-containing-protein	gnl\|CDD\|226272	COG3749, COG3749, Uncharacterized protein conserved in bacteria [Function unknown].	1.57516e-58
NC_021237.1\|WP_015636089.1\|4172697_4174425_+\|hydrogenase-maturation-factor-HoxX	gnl\|CDD\|187719	cd08650, FMT_core_HypX_N, HypX protein, N-terminal hydrolase domain. The family represents the N-terminal hydrolase domain of HypX protein. HypX is involved in the maturation process of active [NiFe] hydrogenase. [NiFe] hydrogenases function in H2 metabolism in a variety of microorganisms, enabling them to use H2 as a source of reducing equivalent under aerobic and anaerobic conditions. [NiFe] hydrogenases consist of a large and a small subunit. The large subunit contains [NiFe] active site, which is synthesized as a precursor without the [NiFe] active site. This precursor then undergoes a complex post-translational maturation process that requires the presence of a number of accessory proteins. HypX has been shown to be involved in this maturation process and have been proposed to participate in the generation and transport of the CO and CN ligands. However, HypX is not present in all hydrogen-metabolizing bacteria. Furthermore, hypX deletion mutants have a reduced but detectable level of hydrogenase activity. Thus, HypX might not be a determining factor in the matur ation process. Members of this group have an N-terminal formyl transferase domain and a C-terminal enoyl-CoA hydratase/isomerase domain.	4.12259e-84
NC_021237.1\|WP_015636082.1\|4159465_4161757_-\|fatty-acid-cis/trans-isomerase	gnl\|CDD\|369142	pfam06934, CTI, Fatty acid cis/trans isomerase (CTI). This family consists of several fatty acid cis/trans isomerase proteins which appear to be found exclusively in bacteria of the orders Vibrionales and Pseudomonadales. Cis/trans isomerase (CTI) catalyzes the cis-trans isomerisation of esterified fatty acids in phospholipids, mainly cis-oleic acid (C(16:1,9)) and cis-vaccenic acid (C(18:1,11)), in response to solvents. The CTI protein has been shown to be involved in solvent resistance in Pseudomonas putida.	0
NC_021237.1\|WP_011061934.1\|4157200_4157614_+\|cobalamin-biosynthesis-protein	gnl\|CDD\|376648	pfam01890, CbiG_C, Cobalamin synthesis G C-terminus. Members of this family are involved in cobalamin synthesis. The protein encoded by Synechocystis sp.cbiH represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyze adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyzes a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process. Within the cobalamin synthesis pathway CbiG catalyzes the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. This family is the C-terminal region, and the mid- and N-termival parts are conserved independently in other families.	2.20613e-37
NC_021237.1\|WP_015636090.1\|4174611_4177893_+\|AAA-family-ATPase	gnl\|CDD\|277345	cd07400, MPP_1, Uncharacterized subfamily, metallophosphatase domain. Uncharacterized subfamily of the MPP superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.8378e-07
NC_021237.1\|WP_041752350.1\|4156502_4157204_+\|CbtA-family-protein	gnl\|CDD\|227733	COG5446, COG5446, Predicted integral membrane protein [Function unknown].	3.53321e-92
NC_021237.1\|WP_011061941.1\|4167672_4169331_+\|nitrite/sulfite-reductase	gnl\|CDD\|223233	COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism].	0
NC_021237.1\|WP_011061945.1\|4172121_4172436_+\|SCP2-sterol-binding-domain-containing-protein	gnl\|CDD\|225794	COG3255, COG3255, Putative sterol carrier protein [Lipid metabolism].	3.72662e-15
NC_021237.1\|WP_015636084.1\|4165761_4165983_+\|DUF2970-domain-containing-protein	gnl\|CDD\|378581	pfam11174, DUF2970, Protein of unknown function (DUF2970). This short family is conserved in Proteobacteria. The function is not known.	8.23643e-23
NC_021237.1\|WP_015636081.1\|4157697_4158444_+\|precorrin-4-C(11)-methyltransferase	gnl\|CDD\|225430	COG2875, CobM, Precorrin-4 methylase [Coenzyme metabolism].	5.37332e-134
NC_021237.1\|WP_015636087.1\|4170121_4171156_-\|protease-SohB	gnl\|CDD\|236978	PRK11778, PRK11778, putative inner membrane peptidase; Provisional.	0
NC_021237.1\|WP_015636085.1\|4165990_4167076_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380547	cd06324, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.	5.39619e-142
NC_021237.1\|WP_041752352.1\|4171359_4172070_+\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	9.32879e-26
NC_021237.1\|WP_011061936.1\|4158738_4159323_-\|Fe-S-biogenesis-protein-NfuA	gnl\|CDD\|132384	TIGR03341, YhgI_GntY, IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	3.58828e-120
NC_021237.1\|WP_015636083.1\|4161911_4165622_+\|methionine-synthase	gnl\|CDD\|236539	PRK09490, metH, B12-dependent methionine synthase; Provisional.	0
NC_021237.1\|WP_015636093.1\|4181385_4182156_+\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	1.88644e-37
NC_021237.1\|WP_011061951.1\|4183531_4184392_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119324	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	3.19736e-66

>NC_021237.1|WP_011061942.1|4169314_4169809_+|DUF934-domain-containing-protein
MQRIIKNNEVIDETWHLLPKDATLDGISNCDDLIVPLALWREHAHALKARDGGLGVWLDADEEAEEIGDDVEQFQVIALNFPAFTDGRNYSNARLLRDRYGYKGELRAIGDVLRDQLFYLHRCGFDAYALRADKDPYEALESLKDFSVTYQAATDEPLPLFRRR
>NC_021237.1|WP_011061941.1|4167672_4169331_+|nitrite/sulfite-reductase
MYVYDEYDQRIIEDRVKQFRDQTRRYLAGELSEEEFRPLRLQNGLYIQRFAPMLRVAVPYGQLTSRQARMMAKIARDYDKGYAHISTRQNVQFNWPALEDIPDILAELATVQMHAIQTSGNCLRNVTTDQFAGVAADELIDPRPWCEIVRQWTTFHPEFAYLPRKFKIAINGSTSDRAAIEVHDIGLEPVYNAAGELGFRVLVGGGLGRTPVVGAFINEFLPWQDLLSYLDAILRVYNRYGRRDNKYKARIKILVKALTPEVFAEKVEAEMAHLRGGQTTLTDAEVHRVAKHFVDPDYKTLSNQDAELAALDQQHPGFARWRTRNTLAHKKPGYVAVTLSLKPTGVAPGDVTDKQFDAIADLADRYSFGQLRTSHEQNIILADVEQSQLFTLWGELRENGFATPNIGLLTDIICCPGGDFCSLANAKSIPIAESIQRRFDDLDYLFDIGELDLNISGCMNACGHHHVGHIGILGVDKKGEEFYQVSLGGSASRDASLGKILGPSFAQDDMPDVISKLIDVYVEQRTEDERFIDTYQRIGIDLFKERVYAANH
>NC_021237.1|WP_015636085.1|4165990_4167076_-|ABC-transporter-substrate-binding-protein
MFKRLCKWLLCLSLPFWAVAHATSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAERDPQSTLQQARELFQGRDKPDYLMLVNEQYVAPQILRLSQGSGTKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEYPQVHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELGRKPGTDLLFSGVNSSPEALQALIDGKLSVLEAGHFTLGGWALVALHDDALGLDARRLGGPDWQLSLFQALTPAQARQLLRLGDQVGTRVDFRGLSAQGKPDSYRYPFGLQLLLR
>NC_021237.1|WP_015636084.1|4165761_4165983_+|DUF2970-domain-containing-protein
MDDPSKDNQPPTFLQMLQSVLAAAFGVQSGKNRARDFSHGKPSHFIVLGILFTTLFVLVLLGIANLAMHLAGV
>NC_021237.1|WP_015636083.1|4161911_4165622_+|methionine-synthase
MSDRSARLHALQQALKERILILDGGMGTMIQSYKLEEHDYRGKRFADWPSDVKGNNDLLVITRPDVIGGIEKAYLDAGADILETNTFNATRISMADYGMEELAYELNVEGARLARKIADAKTQETPDKPRFVAGVLGPTSRTCSLSPDVNNPGYRNVTFDELVENYTEATKGLIEGGADLILIETIFDTLNAKAAIFAVQGVFQELGVELPIMISGTITDASGRTLSGQTTEAFWNSVAHAKPISVGLNCALGASELRPYLEELSNKASTHVSAHPNAGLPNEFGEYDELPEQTAKVIEEFAQSGFLNIVGGCCGTTPGHIGAIAKAVAGYAPRQIPDIPKACRLSGLEPFTIDRSSLFVNVGERTNITGSAKFARLIREDNYTEALEVALQQVEAGAQVIDINMDEGMLDSKKAMVTFLNLIAGEPDISRVPIMIDSSKWEVIEAGLKCIQGKGIVNSISMKEGVEQFIHHAKLCKRYGAAVVVMAFDEVGQADTEARKKEICKRSYDILVNEVGFPPEDIIFDPNIFAVATGIEEHNNYAVDFINACAYIRDELPYALSSGGVSNVSFSFRGNNPVREAIHSVFLLYAIRNGLTMGIVNAGQLEIYDQIPQQLRDAVEDVVLNRTPNGTDALLAIADQFKGDGSVKEAETEEWRGWEVNKRLEHALVKGITTHIVEDTEESRQSFSRPIEVIEGPLMSGMNVVGDLFGAGKMFLPQVVKSARVMKQAVAHLIPFIELEKGDKPEAKGKILMATVKGDVHDIGKNIVGVVLGCNGYDIVDLGVMVPAEKILQVAKEQKCDIIGLSGLITPSLDEMVHVAREMQRQDFHLPLMIGGATTSKAHTAVKIEPKYSNDAVVYVTDASRAVGVATQLLSKELKAGFVQKTREEYVEVRERTANRSARTERLSYPAAIAKKPQFDWSSYQPVKPTFTGARVLDNIDLKVLAEYIDWTPFFISWDLAGKFPRILEDEVVGEAATALYKDAREMLDKLINEKLISARAVFGFWPANQVQDDDLEVYGDDGQPLARLHHLRQQIIKTDGKPNFSLADFVAPKDSGVTDYVGGFITTAGIGAEEVAKAYQDAGDDYNSIMVKALADRLAEACAEWLHQQVRKEYWGYAKDEQLDNEALIKEQYSGIRPAPGYPACPDHTEKSTLFALLDPEASEGRAGRSGVFLTEHFAMFPAAAVSGWYFAHPQAQYFAVGKVDQDQVQSYTERKGQDLAVSERWLAPNLGYDN
>NC_021237.1|WP_015636082.1|4159465_4161757_-|fatty-acid-cis/trans-isomerase
MPFRFIVSSALLLLSSVCLAQGPAPAISYTRDIQPIFTEKCVACHACYDSACQLNLGSGEGASRGASKIPVYDGERSKAQAPTRLFYDATGQRAWQQKGFYSVLDAQGSQAALMARMLELGHRTPLQPNAKLPSEIALGLSRENMCPQPAEFDAYAGAHPKEGMPLAVTGLTDQQYLTLQRWLASGAPIDEQGLAPSARESLQVAQWENLLNAPGARESLVARWLYEHLFLAHLYFEGGEPGHFFQWVRSRTPSGQPIDLINTRRPNDDPGTQVYYRLWPVQGVIVHKTHITYPLSAAKMARVKSLFYSGDWQVTALPGYGPARRANPFETFEAIPAKARYQFMLDNAEYFVRTFIRGPVCRGQIATDVIRDNFWALFQAPEHDLYITDPAYRGQATPLLAMPGQNDDVGSVLSLWLAYRDKRNEYEALRRDSYADSPAPSWSTLWAGNDNALLSIFRHFDSASVTKGLIGEVPQTMWLFDYPLLERTYYQLAVNFDVFGNVSHQAQTRLYFDLIRNGAEQNFLRLMPAGTREDFLDDWYQNSGKFKMWLDYESIDDDKRSALKLDLKDPKKDFANQLLARYGDLNAKPDPINRCDSAYCSRPNIDPALQDAEQALSRLASRPAAGLKVIEQLPEATLLRVQTASGKREFYSMLRNRAHSNVAFMLGESLRYQPGLDTLTIFPGILSSYPNFMFNVPAGQVPEFVDAMQAARDAASFERIVERWGIRRSHPQFWQYFHDQTRYLQETDPVEAGVLDMNRYENL
>NC_021237.1|WP_011061936.1|4158738_4159323_-|Fe-S-biogenesis-protein-NfuA
MSAITITDAAHDYLADLLSKQNTPGIGIRIFITQPGTQYAETCIAYCKPGEEKPEDKALGLKSFTAYIDAFSEGFLDDAVVDYATDRMGGQLTIKAPNAKVPMVNADSPVNERINYYLQTEINPGLASHGGQVSLIDVVEDGIAVLQFGGGCQGCGQADVTLKEGIERTLLERIPELKGVRDVTDHTQKENAYY
>NC_021237.1|WP_015636081.1|4157697_4158444_+|precorrin-4-C(11)-methyltransferase
MTVYFIGAGPGDPELITVKGQRLIHRCPVIIYAGSLVPQAVLDGHRAERVINSAELHLEQIIEAIKQAHARGQDVARVHSGDPSLYGAIGEQIRCLRELGIPFEIIPGVTATAACAALLGAELTLPDVSQSVILTRYADKTAMPAGEDFASLAAHGATMAIHLGVNHLPKIVAELLPHYGADCPIAVVHRATWPDQDWALGTLADIVDQVAAKGFRRTALILVGRVLATDAFSESSLYRAGHAHLYRP
>NC_021237.1|WP_011061934.1|4157200_4157614_+|cobalamin-biosynthesis-protein
MIEVSAAPTLVVGLGCQKGCPVTTLRALLDQVLAAHQWQARQVLALASIDLKRNEPGLLQLAEQLELPLTCFSSGQLAPFALRLSHRSQIAFERTGCYGVAESAALALAEQLSPGPATLLVPRQKYAQATLALVAAR
>NC_021237.1|WP_041752350.1|4156502_4157204_+|CbtA-family-protein
MIKRIAQTAGFTGLLAALLLTLLQSFWVAPLILQAETYEKAPAAEVHEHAEGAMAAHSHDAEAWEPEDGWQRVLSTTGGNLVVAVGFALMLAGLYTLRAPNRTSQGLLWGLAGYATFCLAPTLGLPPELPGTAAADLAQRQIWWVGTAASTAVGIALIVFARNWLLKILGATIIAVPHVIGAPQPEVHSMLAPEELEAQFKIASQLTNAAFWLALGLISAWLFRRKSAGQYSA
>NC_021237.1|WP_015636087.1|4170121_4171156_-|protease-SohB
MEFIAEYASFLAKTVTLVVAILVVLITAAALRSKGRRKGVGQLQVSKLNDFYKELRERLEQSLLDKDQLKALRKAKSKSEKSQKKHKKQPAEAKSRVFVLDFNGDIKASATEGLRHEITALLSLATPKDEVVLRLESGGGMVHSYGLASSQLARIRQAGVPLTVCIDKVAASGGYMMACIGEKIISAPFAILGSIGVVAQLPNVNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLDVTHQLFKNFVSRYRPQLAIDEVATGEVWLGVAAQEKLLVDELQTSDEYLADKAKNAEVFHLHYAERKSLQERVGLAASGSIDRVLLTWWSRLTQQRFW
>NC_021237.1|WP_041752352.1|4171359_4172070_+|histidine-phosphatase-family-protein
MGSIYLIRHGQASFGADDYDVLSATGVRQAAVLGEHLAALGIGFDRCLSGDLRRQQHTAQAALEQMSAAGFDSPALEIDSAFNEFDADAIIRALLPDLLPQEPEALNILRNAAQNRGEFQRIFALIIQRWLAGTYDPPGLESWLGFVERVQGGLQRILEATNNQQKIAVFTSGGTITALLHLITRMPAQQAFELNWQIVNTSLNQLKFRGREVSLASFNGHAHLQLLKAPELITFR
>NC_021237.1|WP_011061945.1|4172121_4172436_+|SCP2-sterol-binding-domain-containing-protein
MTSVADAVQAMQAKFNPAAAAGLDLVFGFRIDDSKHFSLVVKDSTCELKEGENPDAQVTLVMDGETLDGIVSGETDGMQAFMGGKLRAEGDMMLAMKLSELFPA
>NC_021237.1|WP_015636089.1|4172697_4174425_+|hydrogenase-maturation-factor-HoxX
MRSLKIILLSTAFNGLTQRAWLDLRQAGHRPSVVLFTSEEEVCRQIEEAEADLVICPFLKDRVPQQLWSHPKRPVVIIHPGIVGDRGASALDWAISKELKRWGVTALQAVEEMDAGPIWSTHEFNLPAGLRKSELYNGLVSDAAIHCIRDVVEKFRNGYTPQPLDYDKPSVLGRLQPNMKQSDRTFSWHDSAQFIKRSIDAADGQPGVLASLAGGQYYVYDAHLDSRTGMPGQLLAVHDDAVLVACGDHSLWIGYLRLKPQPGEETFKRPARHVLGERLADVPVLDWSVANSPFSTEAYQPIRYRETGKVGELTFEFYNGAMSTEQCQRLVSALRWAKARDTQVLLVRGGRGAFSNGVHLNVIQAAEVPGLEAWANIQAIDDVCLELLTARQLVVSGLTGNAGAGGLMLALAADVILARADTVYNPHYKSMGLYGSEYWTYSLPRAVGQAMAKQLTEACLPISALQALQMGMVQEIGPRCPDEFGLWLLQRANGVLNDPRYQHLRQRKLDADPQLMQHCRNAELEEMHMDMVQNRKGFAEKCSNFVYKRKTCCTPERLIEAWALPQPATLIVRSA
>NC_021237.1|WP_015636090.1|4174611_4177893_+|AAA-family-ATPase
MPTQNKLHWLHLSDIHFHKNTAWSDNHTHSRLLSFLERKFQANDLPKPQLIFCTGDIAFGQTADCPMAEQYQPAKQFFDQLLALCGLERDRLFVVPGNHDVNRKKVLQGQQRHLWEMAKNPVQYTREISSRFASLSAEFKEDMRRMEDYGVFVAEYLPHQHDPVRHLYARQVTVNGIKVGIAGFNSAWSCFNDSDKGQMWLGAEWQFNHMHGALEGADLKIGLIHHPRDWFNQAETQIIKQRKAHDFQFWLHGHSHNPWLEPGQRLIKLEAGAIGADTDDQFGFNLVSLDLQQGSGVAHLFEYKNGWKVQTVADMAEDGHWHFKHSALVAPSSEVSDSTETPPLPTPENPPAEEAPKPTELFGRDKLIASLTTALKEKPCIALHGLSGNGKTTLIKALHRQAAFQRTVFVDIHSSRQMTAGELFRRLLDALSNRREDPQPPSGSVEEQAKELKRLYPHAQTAFIWINGAHLLFENAQWRNPQIHTLLAALRQAFPDWRWAYELSEKPEEGSFGRDCTIQEIPGLDRAGLAALLAARAPNEKKAEWTYTGNNLKALYQWLGGGQGGTAHTLAIELLATIAIERKSSPLAVYQNLRQEVIERLDEKLLSIIHDEVLSGAEQQLLKVLALYRNSIPQDHADYLEDRLCIKDAWQNLRRRGLLPLDNNKDHYLHGFIASWTRQKKMAIKDAELTPDYAENIPENVAQMHLLIAQCWQRQIGRQKEQINFQRANETFYHLLCCNELGNIEEWIDHLVGKDTGWSNEALWAIYHRRRNANESIERQQEVLQLLTNIHPREHMAQRFLGECLQKTKGKSCNEALQAFERALELSPQFPPYLANLGKLLLGRGKSGAEEFLRRLEEHQEAYPEAIDHHVQSIQNRCQQLVGDENEAALQRRQAINNGSKNPAFYNEEARYQLEQCNDANEALRLLDLADKHQCSNDYSITLRGKVLEKLDRAAEASDQRRQVIDSGSKNTVIYNDEAQYQLDQCNDAEEALRILDLANKHQCIPDNYIENIRGKVLEKLNRGTEASSLRMTRIKAGTRDPVLYADEASYQMEKLNNPEEALRLLDLACMHNCDNHVTQNIRRTALLRKNQR
>NC_021237.1|WP_015636091.1|4177883_4180511_-|hypothetical-protein
MPAKSTTSILDTVEGRRLQGSEGEHWRQWGPYLSERQWGTVREDYSADGDAWSYFPHEHARSRAYRWGEDGLAGFSDKAQHWCLGLALWNEHDSILKERLFGLNNAEGNHGEDVKELYFYLDGVPSHAYMRMLYKYPQAAFPYADLVAENARRGLNDTEYEILDTGVFEDNRYFDVTVEYAKHTADDIFMLITVHNRFHQPARLRVLPQVWARNTWSWGGDAPRPSLRLEGDKVLARHGQLPERQITAWGAEPCQWLFCNNDSNFPKLDGLASPGPFKDGFNDYLVDGQASAVSFDGGTRVAAHFVLDLAGGESKRLFLRFAPAGSEPVSARHLFEQRRREADEFYAALQQGIESADARNVQRQALAGLLWSKQLYYFDVNQWLDGDPGQPAPPTEREHLRNTHWRHLSNCDIVSMPDTWEYPWYASWDLGFQAVAFALIDPGFAKQQLLLLVKDRFMHPNGQLPAYEWRFDDANPPVHAWACWRVYQQEKSLTGVGDLDFLERIFHKLLLNFSWWVNRKDAEGRNLFQGGFLGLDNIALFDRSAPLPDGFTLDQADGTAWVAAYALDLMRIALELAKRNGVYVDIAVKFFEHFLYIAGAINRVDESAEGLWDEQDQFFYDVLHRPDGDNEPLRLRSIVGLMPLFAVQVLEQHEHQNLPGLAQRLLGFLHHRPDLASLVSRWYEPGKGNRMLLALLRGERTKDLLKRMLDESEFLSDFGIRSLSKAFEQPFAMQVDGKQLCARYEPAESDSRLYGGNSNWRGPLWMPINYMLIESLREFHRYYDVNFSVEYPRGSGYLASLEEVADGLSQRLTRLFLLDEDGCRPSMSGYPQLQVEAEDRELVLFHEYFHGETGRGLGASHQTGWTALVALLLQR
>NC_021237.1|WP_015636092.1|4180708_4180987_+|hypothetical-protein
MMFSCKAFFPGALLAAAFSTQAEGLDLSYPQPPLPATPIQTPAPQSDMPTFKLQFKPGISYEHHCSGQCTYETNIDQLHDRETRHSSIIDFD
>NC_021237.1|WP_015636093.1|4181385_4182156_+|FadR-family-transcriptional-regulator
MLKRPVRRKRQKLSDVIVESVKRSIVTDALRPGDRLPTEKELMESFQCSKGSAREALKALEVEGLVNTRTGPNGGAYLNQAGTEPASRALRNYLHFQHMDGEQVYQLRKVIEVELAVSVIGRLSEADFKALQDNIDFCSHPEDSEAGQREQRIAELEFHNLLGRACPNPLLSFMAQFLNDLLRDLVVLKKAYKPKRKQFDAANLDYHKRLLLALRAEDESAVRQLMHEHMCDAEHHMTALEGEVTQHFLLEFDHHR
>NC_021237.1|WP_015636094.1|4182258_4183461_+|ABC-transporter-substrate-binding-protein
MQRRTLLKAGLAVSGALSLGLGVRNAFAAEPFTFYGLKSMSGAFASYGKFADMGSRLAVEQYPTLLGRPLHYKVIDTEGNAGKAVRRVQEAIAQDGARFFQGCTLSSSALAVAKEVGKVGGVFMTPVGADEVTGKDCNASTFRWSVPTYGAIRETMVPLIKLLPEAKRWYTITPQYVFGEALLEGAKQVCAEHGIEHIGNSYHSLQEQEFSGYLTNAIAARPDVLVLLNFGSQSSNALRQAVNFGIKERMKVLLVWSAGLDQFQELGSDVLEGVYLGAQYWHQVDTPLNRELVKLTQAKYGINPTYPLAADYIGSKIILDTIAATGSFDGATVAKAMQGLTYQGPTGEESIRAGDHQVIKDYYLLVGKAAATMRDKDDLAEVLSAGRSFPDVSATGCALA
>NC_021237.1|WP_011061951.1|4183531_4184392_+|branched-chain-amino-acid-ABC-transporter-permease
MLNLYLFQILNGLGLGMIYFLIAVGLTIIFGLLNFVNFAHGAFFVLGAYICYTAVSLTGNFWLALVLAPLVVAALAWIIERLLIQRIYHLPHMFQILVTLGIALIIQEASVMIWGPVGKAVAVPELLRGVLVIGDFVYPYYRLFLILFSALVGLGLWLLLERTRFGALVRAGSESTETVSLLGTNIFRLFSMTFALGVALAGIAGVLFAPLRGAQPFVGPEILGVAFVVVVIGGMGSFGGALVGGLLVGVVQSLMTSLWPQGASLMIYGAMAAVILVRPYGLFGRA

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Crispr_ID: NC_021237_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021237_7

4244977-4245135

Orphan

Consensus_repeat	Method
CCCCGCCAGGCGCAGGTCTTGCGGGCCTCTTCGCCGGCAAGCCGGCTCCTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021237_7

>merge|NC_021237|7|4244977-4245135|CRISPRCasFinder
CCCCGCCAGGCGCAGGTCTTGCGGGCCTCTTCGCCGGCAAGCCGGCTCCTGCAGTTCCGTGGTGCACCCACCGCCCCGTAGGAGCGGGCTTGCCCGCGAACGCCATTCCCCGCCAGGCGCAGGTCTTGCGGGCCCCTTCGCCGGCAAGCCGGCTCCTGC

>NC_021237|7|7|4244977-4245135|CRISPRCasFinder
CCCCGCCAGGCGCAGGTCTTGCGGGCCTCTTCGCCGGCAAGCCGGCTCCTGC	AGTTCCGTGGTGCACCCACCGCCCCGTAGGAGCGGGCTTGCCCGCGAACGCCATT
CCCCGCCAGGCGCAGGTCTTGCGGGCCCCTTCGCCGGCAAGCCGGCTCCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_021237.1\|WP_015636128.1\|4239068_4239515_-\|protein-TolR	unknown	unknown	gnl\|CDD\|274306
NC_021237.1\|WP_121528537.1\|4237654_4238029_-\|cytochrome-c5-family-protein	unknown	unknown	gnl\|CDD\|225784
NC_021237.1\|WP_011061992.1\|4246187_4247225_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NC_021237.1\|WP_011061993.1\|4247408_4249034_+\|NADP-dependent-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|143401
NC_021237.1\|WP_011061981.1\|4232638_4233676_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NC_021237.1\|WP_015636133.1\|4250181_4251387_-\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NC_021237.1\|WP_015636134.1\|4251383_4251923_-\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|131715
NC_021237.1\|WP_015636130.1\|4240323_4242246_-\|phytase	unknown	unknown	gnl\|CDD\|226698
NC_021237.1\|WP_015636124.1\|4234948_4236223_-\|DSD1-family-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|143489
NC_021237.1\|WP_015636127.1\|4238259_4239072_-\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|367555
NC_021237.1\|WP_015636129.1\|4239531_4240242_-\|protein-TolQ	unknown	unknown	gnl\|CDD\|131843
NC_021237.1\|WP_015636137.1\|4253822_4254650_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	unknown	unknown	gnl\|CDD\|224443
NC_021237.1\|WP_011061998.1\|4252873_4253764_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_021237.1\|WP_011061994.1\|4249141_4250185_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|224208
NC_021237.1\|WP_015636138.1\|4254722_4255181_-\|molybdopterin-synthase-catalytic-subunit-MoaE	unknown	unknown	gnl\|CDD\|182642
NC_021237.1\|WP_015636132.1\|4245263_4246178_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NC_021237.1\|WP_041752362.1\|4233936_4234881_+\|transporter	unknown	unknown	gnl\|CDD\|226763
NC_021237.1\|WP_015636125.1\|4236239_4237634_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|130740
NC_021237.1\|WP_041752363.1\|4252137_4252764_+\|molybdenum-cofactor-guanylyltransferase-MobA	unknown	unknown	gnl\|CDD\|234725
NC_021237.1\|WP_015636131.1\|4242285_4244808_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273804

Protein	Function_ID	Function_description	E-value
NC_021237.1\|WP_015636128.1\|4239068_4239515_-\|protein-TolR	gnl\|CDD\|274306	TIGR02801, Protein_TolR, TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	3.16649e-46
NC_021237.1\|WP_121528537.1\|4237654_4238029_-\|cytochrome-c5-family-protein	gnl\|CDD\|225784	COG3245, CycB, Cytochrome c5 [Energy production and conversion].	3.85012e-33
NC_021237.1\|WP_011061992.1\|4246187_4247225_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	4.17136e-22
NC_021237.1\|WP_011061993.1\|4247408_4249034_+\|NADP-dependent-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|143401	cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11. NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9) catalyzes the irreversible oxidation of glyceraldehyde 3-phosphate to 3-phosphoglycerate generating NADPH for biosynthetic reactions. This CD also includes the Arabidopsis thaliana osmotic-stress-inducible ALDH family 11, ALDH11A3 and similar sequences. In autotrophic eukaryotes, NP-GAPDH generates NADPH for biosynthetic processes from photosynthetic glyceraldehyde-3-phosphate exported from the chloroplast and catalyzes one of the classic glycolytic bypass reactions unique to plants.	0
NC_021237.1\|WP_011061981.1\|4232638_4233676_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	4.98866e-35
NC_021237.1\|WP_015636133.1\|4250181_4251387_-\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	8.34936e-157
NC_021237.1\|WP_015636134.1\|4251383_4251923_-\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|131715	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B., molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	9.139e-103
NC_021237.1\|WP_015636130.1\|4240323_4242246_-\|phytase	gnl\|CDD\|226698	COG4247, Phy, 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism].	1.00749e-89
NC_021237.1\|WP_015636124.1\|4234948_4236223_-\|DSD1-family-PLP-dependent-enzyme	gnl\|CDD\|143489	cd06814, PLPDE_III_DSD_D-TA_like_3, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible members of this family also form dimers in solution.	0
NC_021237.1\|WP_015636127.1\|4238259_4239072_-\|energy-transducer-TonB	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	4.4387e-14
NC_021237.1\|WP_015636129.1\|4239531_4240242_-\|protein-TolQ	gnl\|CDD\|131843	TIGR02796, Protein_TolQ, TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	1.22101e-84
NC_021237.1\|WP_015636137.1\|4253822_4254650_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	gnl\|CDD\|224443	COG1526, FdhD, Uncharacterized protein required for formate dehydrogenase activity [Energy production and conversion].	1.46271e-79
NC_021237.1\|WP_011061998.1\|4252873_4253764_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	8.05568e-36
NC_021237.1\|WP_011061994.1\|4249141_4250185_+\|FUSC-family-protein	gnl\|CDD\|224208	COG1289, COG1289, Predicted membrane protein [Function unknown].	1.86413e-25
NC_021237.1\|WP_015636138.1\|4254722_4255181_-\|molybdopterin-synthase-catalytic-subunit-MoaE	gnl\|CDD\|182642	PRK10678, moaE, molybdopterin synthase catalytic subunit MoaE.	1.70779e-69
NC_021237.1\|WP_015636132.1\|4245263_4246178_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.85382e-37
NC_021237.1\|WP_041752362.1\|4233936_4234881_+\|transporter	gnl\|CDD\|226763	COG4313, COG4313, Protein involved in meta-pathway of phenol degradation [Energy production and conversion].	1.47367e-114
NC_021237.1\|WP_015636125.1\|4236239_4237634_-\|FAD-binding-protein	gnl\|CDD\|130740	TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.	1.55482e-141
NC_021237.1\|WP_041752363.1\|4252137_4252764_+\|molybdenum-cofactor-guanylyltransferase-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	4.18016e-80
NC_021237.1\|WP_015636131.1\|4242285_4244808_-\|TonB-dependent-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	0

>NC_021237.1|WP_015636131.1|4242285_4244808_-|TonB-dependent-receptor
MYKRSSPGLVSFTLTALAMAIASERLSAAEPAATEHVEVVGQAASIDQALKEQRRSDSIESVVHADGVAQLPDQNVAEAAQRLPGISIERDQGEGRFVSVRGLGPDLNSVTINGTLVPSPESARRAVALDVLPSELVQSLSVIKTLTPDMDANSLGGTVDVKSLSAFDHKGLFYTGSSEASYDQNTRQTSPKFSGAASNRFSLGDGVDNFGVAAALSWQKRDFGSDNVETGGAWDFEQGAKLQEFEQRDYAISRERAGGGLNFDYKPDDSSSYYLRTLYSRYKDSETRNSTSIEFADPLAAGERGDAEASRKLKQREETQEIQSYVFGGERQLGLWTLSGQTGYSRSSEDSPAHIAGATFKGNSDFSDSGFYDNGKPRPVIGAGFYDPANFTLDKVDWEKQNTTDTEKNLRLDLARDYDLSGYAAQFKFGGKVSRRNKDNDLEAWVYKDFDTLGFTDQQLNLGQFQKGNVDYSLGRFGPGISGGAIKQLIGGLNQAAFYDEEESRVNDFKIREDINAGYFMNTLDIDDWRFIAGLRYEGTEFEAKGTGVTDGAFTATDTQRRYQHWLPGLHARYQLDKNTQVRAAWTKSVVRPTFGQLAPGFVIDGDEATFGNPDLKPLESSNLDLGIEHYMGRAGSVSAFVFYKDIQNFVYNTDLAGTGAWSGFSEAHTFANGDSAKLYGLELAYSQKFDWLPAPWNGLLLGANSTFSRSSASIEGFDQKAGVNRKRDIDLPNQSDTVGNLMLGWEDDKLSLRLSANYKSAYLYELASISDKAHDLHVDAQTFVDFSAKYSLTKNLQLSFEAQNLTDQPYFVYTGNRSYNAQYEEYGPTYKLGLTFTHF
>NC_021237.1|WP_015636130.1|4240323_4242246_-|phytase
MSTVSTARNRLLALCIGLTCGAALAAPSVPGLNLKPWAEQTPGVTGLGFVPAGTGADRLLASEREGLLLVDEQGRQLARFKGSFNGLDSRAAGGQLLVASLDNQRQQALLVSLDPASRTWGQPLYLPTRDYPVNGLCLYRDEASNLFLFLVGEEGKGEQWLVGHGAQLSAEPQRVRGLPLPPEAKFCQVDDAAQQLLVNEQNVGWWAYPAHAEADTARQPVALRAPFGDIRKSAGAMARVPGGVLGLDPKAAQLHLYQQQEKGWVAQATLPLAGLKEPENIALRASDKGLQVLLRDDEDGRLYQGQLNWQATPVALPPVLPTVQAAAQSEPVGRQGDAADDPAIWVHPQQPSLSRVLGTNKKQGLLAYDLQGKLLQELAVGRLNNVDVRPNFQLGERRVDLAVASNRDRNSLSLFAIDRASGELSEAGEVPTPLKEIYGICLFQPASGEIYAIANDKDGTFVQYRLSAPGGTAQGELVRRFKVASQPEGCVADDQRQRLFLGEEDVGVWAVDARPEQPATLHSVIKVGGLLQADVEGLALYQSNARDYLVISSQGNDSYLVLDAEPPFASHGAFRVSLNARAGIDGASETDGLEVTSANLGGPWSQGLLVVQDGRKRMPEQTQNFKFVPWAEVTQALKLP
>NC_021237.1|WP_015636129.1|4239531_4240242_-|protein-TolQ
MQATLEHMSIWGLISDASLLVKAVMLTLLLASLLSWYLIIQRGAVLRGRELRFQAFIQRFRAAPELLPLYREVAKGSDAEGGVEPIFAAGYQEFSHLRGQPGGAGEGVLEGVERALYVAISEQETRLEKGLQFLATVGSVSPYIGLFGTVWGIMNSFLGLSQVQQATLSTVAPGIAEALIATAIGLFAAIPAVIAYNRFSARSQTLLTRYYAFGNELQVRLHRTLQGAPSHLAVAA
>NC_021237.1|WP_015636128.1|4239068_4239515_-|protein-TolR
MLTRPQRKHGPKAEMNVVPYIDVMLVLLVIFMVTAPMLTQGVKIELPKVASEALAIDSRQQILTLSVQAGGGYYWNLGGELDTRNQTDSAVDLEQMRAKVAQVIARRGDTQVYIRADQDAAYASVVAAMAALQQGGVHNLGLVTEAPQ
>NC_021237.1|WP_015636127.1|4238259_4239072_-|energy-transducer-TonB
MTAMIMHNPTAMPLRPEASGFWRNSLAASLALALHAGVLVALVLGWSVDKPQVETPPVLTTQLVMLAPPAAPAEPLPAVAEVAPQPPSTPPPAAAPEPARPRVDPQVQAQKLEQAALARKRVEDKKREQVQEQQRERLEAEQRQRDTEQRVAQEQAQAQRAEQSRLAAERTRQQAAQAAADSRQYQPLSKEAPDYPQRALDKNLEGDCTVEYSVNPQGRVENPKVIDGCHPLFMRPSLAAVATFRYQPRLIDGQAVTVPAVRNTFHYRIK
>NC_021237.1|WP_121528537.1|4237654_4238029_-|cytochrome-c5-family-protein
MRRHSWLPIRSALGLALGLLLSACGEAEPPAAVRLDAARQSPADPALAQVYTSSCQLCHANPASGAPLAGDAKAWAPRLAQGADTLLDHSINGYQGMPPMGQCMQCSEEQFLALISFMSGHSFQ
>NC_021237.1|WP_015636125.1|4236239_4237634_-|FAD-binding-protein
MVMHLSRRRLLQGAGALGAFSALCSNPLLAELARAPRLIPWRNWSGAQSCLPQARLAPKDLDELRQVVRQAPGKIRPVGAGHSFSALVPTDGTLLSLAYFNGLLDHDPKTLQAEFAAGTPMSLMGPALKEVGQALWNMADIDYQTLAGAIATSTHGTGVGFGSYSSRVCGLQLVTASGEVLDCDPRRNAEVFHVARVSLGALGVATRVRLQNREAYRLREKQWIGKTEELLEDMDNLTRDNQHWEMLVVTHSDYALAVALNETTEPPTPPTDPAEEGGNEFVNLIENLDKYVSDFPETRRHLLNSLRWLARFDERVGDSYQIYANVRSVRFNEMEYSVPAHLGPACLREILALIRDKDLRTWFPIEYRYVKADDIPLSMFEGRDSCSISVHQHYSMDHHNFFAAVEPIFWKYQGRPHWGKHHSLNARTLQGLYPQWAAFARVRQALDPQGKFINAHLASVLGVA
>NC_021237.1|WP_015636124.1|4234948_4236223_-|DSD1-family-PLP-dependent-enzyme
MNRRHFMAGTLGAGVLLAGVGAWLRPGDRGLPYSPYFAELNRELKAHGPMQPVMLIDLDRLDHNIDVVMQSVQRGGKHLRLVEKSLPSPGLLAYIAQRAGTRRLMSFHQPFLNHDAEVFADADILLGKPLPIRAVELFYQQLKGPFDPRRQLQWLLDTPERLQQYLALAQGLGTRMRINIELDVGLHRGGVADHAVLGQMLALISAHPRHLEFAGFMGYDPFVDMGVPGILGSPQSLFDKVMQRYNGFADFTRQQYPALWQAELTLNTAGSPSYRRHEQESLSTEVSVGTALLKPSHYDLASLEQHVPAAFIATPVLKSTGPVRIPALDDKSRLFSWWDRNQHQTFFIYGGHWLADFESPAGLQSNELFGRSSNQEMVNGSRAVGLQVDDQVFLRPQQSEAVLLQFGDLLALRGGRIVERWPVY
>NC_021237.1|WP_041752362.1|4233936_4234881_+|transporter
MHPTRLTRSLHLGVALAACANLNAQATESGVDNIGPGTDGFYVLPLSPDQLPEHMFAFNLYYNHYQARKLDISSFGGKVQEVRITSDAIIPRLDYLSPLRVLGGRLGGYVAQPYLRQQVSLYGQSDRRESMGDTTFAPIILWDMGPDLTLGAALEVTLPTGQYDADRLANTSNNFTTYKPLFSMTWLPSERTELSFKSTYSFNQENHATHYRSGQILHFDYSASYRLTDDLSLGLNGYYLKQTTDDKQNGKTVTFMGEDVSDGVRGQVFAIGPALHLRFLRYASAEIRWAKEFDVENRPEGDMLWAKLTIPFAL
>NC_021237.1|WP_011061981.1|4232638_4233676_-|AraC-family-transcriptional-regulator
MQIKAADAHDQLALVSPFLLQTLADVAEAKGVSAERLCRGLGFTLDDLQDPTLRISYRQAVAMIERALAALPQQGLGLWVGSRNVLGTLGLLGHALSLCRTLGDAFELGIRHQHTSGTIVSADVGRQGEEFFVELQCRLPYGEVQIFAAEEFFASLLIYGRALVSADFQALRVEFMHAAPAYAELYTRLLGPHVQFGCLQARMVIEARWLQAPLPNHHPVALRQALKLLELESAQVHQKMDLIQAVERALSRDLRAGSHIEQVAGDLNMSGRTLRRRLTEHGLTFEALLERVRQARTLNLLGNPELSIERITEEVGYSDVRSFRRAFKRWTGLSPSAFREEAALH
>NC_021237.1|WP_015636132.1|4245263_4246178_+|GGDEF-domain-containing-protein
MFSVLKPHRWKLAVLLLAANAGLLLHLACGSLKSVSEWQWLDIIGEGGSALLALVWLGLVLKSRPAGRVTNYLALGLSCIFFSWWIDSLDEFIRLPDSITWDHWLESGPMPIGMILLTIGIYHWHREQLAISAQMEKKERLFREHRQFDKLTPLAGADYLKRELASSLQDSRRQQQPLSLLALDLDHFAAINQDYGHAEGDAVLQALSHVLLLNLRRQDLLCRLAGDRFVVLLPNTGESQARLLALELQQAVQGLAHKTRQHGERLHLAASTAVVMALEETPEGLLKRLNLALARAKQPLAKTA
>NC_021237.1|WP_011061992.1|4246187_4247225_+|AraC-family-transcriptional-regulator
MTVKTSWYEADTRFIPGHYQPAALIDLALSRDIDSHRLLRGTGLFHEDILAGQTRLSPQQFLALIGNGRRLLDADDSSFLFGQRLLPGHYGAASHALRHAQNLHQALDALVQQQALLSPLASPRLVLDEHHAYCYWLDSCGAGEHWRFLLEASMTSLVAMSQWLAGQRLPWECSFSHSEPRYVEQYWVHLGEQTQFQRPLDLMRIPRQYLTRPWPGASATAGQVARLEAGEHLRQLGFASSFLDTLYRYLKTQVRHTPSLEQAAQDFAMSPATLKRKLSKHHSGYQQQVDRVHKHVALYLYQIKGWSNEAVAEYLNFNDPANFRRSFKRWTGSTPSLIRQLLGSG
>NC_021237.1|WP_011061993.1|4247408_4249034_+|NADP-dependent-glyceraldehyde-3-phosphate-dehydrogenase
MTTANLLSHLFPAAADIPEAFRLPDPVEQRDYLVDGELRTWNGPLAQVRSPIYLSGADGDTQVILGSTPLLDADTALTALDAAVRAYDRGQGAWPTMRVAERIQHVEAFLARMREQRTAVVKLLMWEIGKNLKDSEKEFDRTCDYIVDTIGALKELDRRSSRFELEQDTLGQIRRVPLGVALCMGPYNYPLNETFTTLIPALIMGNTVVFKPAKLGVLLIRPLLEAFRDSFPAGVINVIYGSGRETVSALMASGKIDIFAFIGTNKAASDLKKLHPKPHRLRAALGLDAKNPGIVLPDADLDNAVSEALTGSLSFNGQRCTALKILFVHEAVVERFIEQFNAKLQGLKPGMPWEPGVALTPLPENTKVDYLHALVADAQAHGAKVVNAHGGEARASFFYPAVLYPVTPQMRVYHEEQFGPVVPIVPYRDLDTVIDYVLESDFGQQLSLFGSDPAEIGRLVDAFANQVGRININAQCQRGPDTFPFNGRKNSAEGTLSVHDALRTFSIRTLVATKFQERNKQLISDIIRNRESSFLTTDYIF
>NC_021237.1|WP_011061994.1|4249141_4250185_+|FUSC-family-protein
MLRRLLRPVLDPYRRYRHARLIHAVRVALGLIATILLTTGLNLPHGEWASVTMLVVIGGLQHHGNIGKKAAERAIGTLVGAGVGLVLVVQQAYFGHPWLTYLGMSVVCGYFSYHAIGKGGYTALLAAITVFIVAGHGDNQVSDGLWRAVDILIGIALALAFSFAIPLYAVYSWRYNLASALRDCAQLYGRIIKGQSVTDDEHLKLLGRVNSAMLQLRSLMPSVSKEVRISMTELDAIQRNLRMCISTLEILGNTRPDASDPQAMAQMQLALKAEHRQIRVQLIGMARALQSGVTQRLEKSVEGHPENALEAPVYSALDGYRLLTRQLAATLGEMHQRLAKSARHWKI
>NC_021237.1|WP_015636133.1|4250181_4251387_-|molybdopterin-molybdotransferase-MoeA
MSQNPLMPVEEALASLLAMADAQRLPESETLAVDQARQRVLATDLVATLDLPPWPNSAMDGYALNLQHWDGAPLPVAQTVFAGQPGAPLQPGSCARIFTGAPVPEGADCVEMQENVELLEDGRVRFTQALKTGQNIRPQGQENRAGEVLLQAGKRLGPFELAVAAAQGCTELQVVRRPRVALLSTGDELLEPGTPMRPGCIYNSNRTLLRHWLDALGCEVIDAGILPDRPQHTRLRLERLQHGADLILTTGGVSAGDADCLGQVLRDSGRPLFWKLAIKPGKPLTVGYFGQVPVIGLPGNPASALVTFGLLARAYLLRLQGVQEVAPLSVEVPVAFAWPKAGKRREYLRARLENGRAVLYPNQSSGVLLGASWADGLVEIVEGRTLQAGDRAPFIPFSELF
>NC_021237.1|WP_015636134.1|4251383_4251923_-|molybdenum-cofactor-biosynthesis-protein-B
MSVKSDALFVPLNMAVLTVSDTREYATDTSGQLLVSRLLEAGHSLAERNLLKDDLYKIRAQVAAWIADERIQVVLITGGTGFTGRDSTPEAVGCLLDKHIDGFGELFRAISILDIGTSTVQSRALAGLANGTLVCCLPGSTGACRTAWEGILAEQLDARHRPCNFVPHLKPVQACESRG
>NC_021237.1|WP_041752363.1|4252137_4252764_+|molybdenum-cofactor-guanylyltransferase-MobA
MRPAMTPTQPTSACSLPCSILLLAGGRGSRMGGQDKGLVAWRGQPLIAHVQAVVRPLSDDLIISCNRNAERYRAYADRLVEDGQKDFPGPLAGVLAGLATARHPWLLVLACDAPQIDAALIQALLDARGNDTRPVMVQQAGQWQPMFSLIPTALLGDLRQAWDNGERSLLRALAAHGLRPLPCAADDPRLSNFNTPELLSEAGPKPLA
>NC_021237.1|WP_011061998.1|4252873_4253764_+|LysR-family-transcriptional-regulator
MDIKQLKFLIALEQTRHFGQAAARCHITQPTLSMRLRNLEDELDLILVTRGQRFEGFTEAGERVLAWAKTLLAAHDGLFAEAAACRGQLVGKLRLGLVPLSGFNPISYVQQLSSSFPELQFSLSSMSSDRIIEDIGNNQLDLGVCYLDHVNPNYLDFFEIGETRVGLLYDTRHFHFEGTEMSWEDAAELPLGMLSTGMHYRKSIDLSFRSRGLNPQPILESDSTYQLFQAIHEGFCCSIMPLDSGLDSPIENLAFIQLPDASVLAPLGLVMRKTEPRSAIAEKCFAEAKKLFAIKE
>NC_021237.1|WP_015636137.1|4253822_4254650_+|formate-dehydrogenase-accessory-sulfurtransferase-FdhD
MVCRIEQTEQQPEANAPAPAPQRVAYREYSADGPMAEAPLAAEIALAITYNGLSQAVMMVSPGNLEDFIRGFSITNDIVNDLGEIYDIRLSHFPQACQADVEISSRAFWALKDHRRQMAGTSGCGLCGVEALEQALPQLQILEPAALPPAEHLQGLRERIEQAQHMARSSGALHAALYFDEQGEVRLCQEDIGRHNALDKLIGALLQAGIDGSRGFTVVTSRCSLELIHKAVRARLGTLVSLSAPTALTVQWANKHRLNLIHVPHRNAPRIYSPV
>NC_021237.1|WP_015636138.1|4254722_4255181_-|molybdopterin-synthase-catalytic-subunit-MoaE
MSIQVQTQALSLDQLNAGLQAGDASVGGVVTFVGYVRDLNLGEAVHSLFLEHYPGMTERSLQRIVEQAQARWPLNRVSLVHRVGLLQVGEPIVFVGVASAHRQAAFEACAFIMDYLKTRAPFWKREVTPAGERWIDGRESDRQAAERWGVER

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1342429 : 1447009

104

Pseudomonas_phage(35.29%)

plate,tRNA,holin,protease,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_073698950.1\|1342429_1343251_+\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	1.7e-08	33.0
WP_015634326.1\|1343333_1343744_-	SufE family protein	NA	NA	NA	NA
WP_015634327.1\|1343740_1344946_-	aminotransferase class V-fold PLP-dependent enzyme	Q2XUY6	environmental_halophage	1.1e-70	35.7
WP_015634328.1\|1345022_1346057_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_011059519.1\|1346090_1346453_-	ArsC family reductase	NA	NA	NA	NA
WP_015634329.1\|1346690_1348337_+	Na+/H+ antiporter	NA	NA	NA	NA
WP_015634330.1\|1348392_1349592_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA
WP_015634331.1\|1349630_1352333_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA
WP_011059523.1\|1352381_1353164_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_011059524.1\|1353571_1354309_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_011059525.1\|1354512_1355379_+	elongation factor Ts	NA	NA	NA	NA
WP_011059526.1\|1355588_1356332_+	UMP kinase	NA	NA	NA	NA
WP_011059527.1\|1356328_1356886_+	ribosome recycling factor	NA	NA	NA	NA
WP_011059528.1\|1356901_1357657_+	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	5.0e-18	38.1
WP_015634332.1\|1357656_1358463_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_041751975.1\|1358459_1359650_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_011059531.1\|1359699_1361052_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_011059532.1\|1361126_1363517_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_011059533.1\|1363562_1364066_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_015634334.1\|1364069_1365125_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_007924058.1\|1365234_1365675_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_011059535.1\|1365671_1366448_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_015634335.1\|1366450_1367575_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_015634336.1\|1367592_1368225_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	4.4e-28	40.0
WP_015634337.1\|1368294_1371816_+	DNA polymerase III subunit alpha	A0A2L1IZ23	Streptomyces_phage	1.9e-197	38.1
WP_015634338.1\|1371955_1372903_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_015634339.1\|1373036_1374353_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_011059541.1\|1374627_1376259_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	2.4e-158	53.6
WP_011059542.1\|1376264_1377110_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	7.9e-49	42.4
WP_011059543.1\|1377265_1378555_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.5e-136	59.4
WP_011059544.1\|1378727_1379006_+	cell division protein FtsB	NA	NA	NA	NA
WP_011059545.1\|1379002_1379710_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_011059546.1\|1379827_1380727_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011059547.1\|1380831_1381944_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	1.9e-29	27.4
WP_015634341.1\|1382030_1382876_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_011059549.1\|1382928_1383402_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_015634342.1\|1383398_1384457_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_015634343.1\|1384444_1385194_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.7e-67	52.6
WP_011059552.1\|1385193_1385871_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.0e-43	49.5
WP_011059553.1\|1386083_1386944_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	6.5e-06	33.3
WP_011059554.1\|1387050_1388058_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.6e-34	35.8
WP_011059555.1\|1388569_1388893_-	ferredoxin family protein	NA	NA	NA	NA
WP_011059556.1\|1389036_1391616_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	2.1e-28	24.2
WP_041751977.1\|1391802_1392549_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	1.0e-124	90.3
WP_011059558.1\|1393065_1393416_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	3.2e-52	89.6
WP_041751978.1\|1393504_1394026_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	9.6e-21	37.9
WP_041751979.1\|1394022_1394613_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	1.8e-52	72.5
WP_015634348.1\|1394705_1394909_+	hypothetical protein	NA	NA	NA	NA
WP_015634349.1\|1394913_1395240_+	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	5.1e-36	67.6
WP_015634350.1\|1395236_1396118_+\|plate	baseplate J/gp47 family protein	A0A2H4JFK9	uncultured_Caudovirales_phage	3.4e-95	62.7
WP_015634351.1\|1396119_1396725_+\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	1.2e-70	65.3
WP_015634352.1\|1396721_1397948_+\|tail	phage tail protein	A0A2H4JF09	uncultured_Caudovirales_phage	3.4e-77	72.2
WP_134532553.1\|1397947_1398718_+	hypothetical protein	NA	NA	NA	NA
WP_134532557.1\|1398714_1399167_+	hypothetical protein	NA	NA	NA	NA
WP_015634354.1\|1399268_1400435_+\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	3.0e-179	80.7
WP_015634355.1\|1400447_1400957_+\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	1.1e-66	73.1
WP_015634356.1\|1400966_1401272_+\|tail	phage tail assembly protein	A0A2H4J873	uncultured_Caudovirales_phage	1.2e-18	51.5
WP_015634357.1\|1401413_1403960_+\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	5.0e-78	35.6
WP_015634358.1\|1403969_1404815_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	4.5e-76	54.6
WP_015634359.1\|1404789_1404996_+\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	3.4e-22	71.6
WP_015634360.1\|1405057_1406101_+	hypothetical protein	A0A2H4JBF6	uncultured_Caudovirales_phage	2.1e-147	74.9
WP_015634361.1\|1406151_1407288_+	glycosylase YvbX	A0A2L0HM30	Microbacterium_phage	5.4e-08	28.0
WP_015634362.1\|1407445_1408027_+	hypothetical protein	B5TK65	Pseudomonas_phage	2.4e-65	63.0
WP_011059562.1\|1408023_1408206_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	3.9e-22	86.7
WP_015634363.1\|1408205_1409702_+\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	5.4e-250	88.0
WP_011059564.1\|1409768_1410116_+\|tail	phage tail tube protein	B5TK68	Pseudomonas_phage	1.7e-53	86.1
WP_011059565.1\|1410112_1410409_+\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	3.6e-41	89.8
WP_015634364.1\|1410539_1412138_+	hypothetical protein	B5TK70	Pseudomonas_phage	9.1e-62	60.9
WP_015634365.1\|1412127_1413372_+	DNA circularization N-terminal domain-containing protein	B5TK71	Pseudomonas_phage	2.0e-173	73.7
WP_015634366.1\|1413375_1414416_+\|plate	baseplate protein	B5TK72	Pseudomonas_phage	2.6e-150	78.8
WP_041751983.1\|1414525_1415032_+\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	4.7e-73	85.1
WP_015634368.1\|1415034_1415433_+	phage GP46 family protein	B5TK74	Pseudomonas_phage	1.5e-58	81.8
WP_015634369.1\|1415422_1416463_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	8.9e-159	83.2
WP_011059572.1\|1416450_1417050_+	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	4.0e-95	82.9
WP_015634370.1\|1417065_1418163_+\|tail	phage tail protein	A0A1W6JT73	Escherichia_phage	2.4e-29	40.9
WP_041116261.1\|1418159_1418537_+	hypothetical protein	B5TK82	Pseudomonas_phage	5.9e-12	50.0
WP_015634371.1\|1418587_1419151_+	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	5.6e-83	79.5
WP_015634372.1\|1419259_1419775_+	hypothetical protein	A0A1S5NQ26	Burkholderia_phage	4.1e-24	48.7
WP_041116265.1\|1420044_1420686_+	hypothetical protein	B5TK60	Pseudomonas_phage	5.1e-64	55.6
WP_011059578.1\|1420855_1421356_+	CinA family protein	B5TK85	Pseudomonas_phage	5.2e-72	84.3
WP_011059579.1\|1421439_1422492_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	2.0e-113	61.0
WP_011059580.1\|1422500_1422968_+	recombination regulator RecX	NA	NA	NA	NA
WP_015634374.1\|1423008_1424127_-	TIGR00730 family Rossman fold protein	NA	NA	NA	NA
WP_011059582.1\|1424570_1424765_+	hypothetical protein	NA	NA	NA	NA
WP_011059583.1\|1424765_1425191_-	quorum-sensing-regulated virulence factor family protein	NA	NA	NA	NA
WP_041751984.1\|1425382_1426093_+	DTW domain-containing protein	NA	NA	NA	NA
WP_011059585.1\|1426076_1426982_-	DMT family transporter	NA	NA	NA	NA
WP_011059586.1\|1427220_1427871_+	response regulator transcription factor	NA	NA	NA	NA
WP_011059587.1\|1427946_1428309_+	diacylglycerol kinase	NA	NA	NA	NA
WP_011059588.1\|1428310_1429237_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003198368.1\|1429356_1430136_+	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_015634378.1\|1430258_1430954_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_015634379.1\|1431071_1431842_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_011059591.1\|1431969_1432431_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	4.2e-36	49.3
WP_015634380.1\|1432497_1433208_-	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_015634381.1\|1433290_1433764_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015634382.1\|1433881_1435219_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_015634383.1\|1435540_1437442_+	potassium transporter Kup	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	3.2e-74	33.7
WP_015634384.1\|1437610_1437886_-	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_015634385.1\|1438316_1439615_-	virulence factor family protein	NA	NA	NA	NA
WP_015634386.1\|1439614_1442263_-	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA
WP_015634387.1\|1443191_1444259_+	DNA polymerase IV	NA	NA	NA	NA
WP_011059599.1\|1444322_1445276_-	hypothetical protein	NA	NA	NA	NA
WP_015634388.1\|1445293_1447009_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_2

2252810 : 2325421

Pseudomonas_virus(50.0%)

terminase,plate,integrase,tRNA,capsid,holin,tail,portal,head

attL 2250665:2250680|attR 2321124:2321139

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2250665:2250680	attL	NA	NA	NA	NA
WP_015634829.1\|2252810_2253821_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_015634830.1\|2253924_2255076_+\|integrase	site-specific integrase	L7TP61	Pseudomonas_virus	4.9e-134	62.5
WP_015634831.1\|2255050_2255326_-	pyocin activator PrtN family protein	A0A2K8HN48	Pseudomonas_phage	6.4e-24	64.0
WP_015634832.1\|2255322_2255949_-	hypothetical protein	Q5QF31	Pseudomonas_virus	3.0e-61	58.7
WP_041752068.1\|2255963_2256215_-	hypothetical protein	NA	NA	NA	NA
WP_015634833.1\|2256211_2256676_-	hypothetical protein	NA	NA	NA	NA
WP_041752069.1\|2256745_2257042_-	hypothetical protein	NA	NA	NA	NA
WP_041752735.1\|2257276_2260075_-	toprim domain-containing protein	A0A2H4J936	uncultured_Caudovirales_phage	0.0e+00	62.6
WP_015634837.1\|2260147_2260381_-	hypothetical protein	NA	NA	NA	NA
WP_015634838.1\|2260457_2260829_-	hypothetical protein	NA	NA	NA	NA
WP_015634839.1\|2260825_2261116_-	ogr/Delta-like zinc finger family protein	Q9ZXJ1	Pseudomonas_virus	8.2e-14	45.7
WP_015634840.1\|2261112_2261586_-	hypothetical protein	A0A2H4JG61	uncultured_Caudovirales_phage	8.3e-56	66.2
WP_015634841.1\|2261615_2261828_-	DNA-binding protein	A0A2H4JE67	uncultured_Caudovirales_phage	2.8e-11	56.5
WP_041752736.1\|2261912_2262233_+	helix-turn-helix transcriptional regulator	A0A2H4JFL3	uncultured_Caudovirales_phage	2.2e-20	45.6
WP_080644444.1\|2262229_2262592_+	DUF2511 domain-containing protein	NA	NA	NA	NA
WP_015634842.1\|2262722_2262884_+	hypothetical protein	NA	NA	NA	NA
WP_041752071.1\|2262948_2263563_+	hypothetical protein	NA	NA	NA	NA
WP_015634844.1\|2263679_2264948_-	phage late control D family protein	Q9ZXJ8	Pseudomonas_virus	6.5e-196	81.4
WP_015634845.1\|2264944_2265385_-\|tail	phage tail protein	A0A2H4JG54	uncultured_Caudovirales_phage	6.4e-58	75.3
WP_015634846.1\|2265391_2268013_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	4.7e-156	38.9
WP_041752072.1\|2268002_2268122_-\|tail	GpE family phage tail protein	Q9ZXK1	Pseudomonas_virus	1.7e-10	79.5
WP_015634847.1\|2268130_2268460_-\|tail	phage tail assembly protein	Q9ZXK2	Pseudomonas_virus	2.1e-26	61.9
WP_015634848.1\|2268513_2269029_-\|tail	phage major tail tube protein	Q9ZXK3	Pseudomonas_virus	7.9e-76	77.8
WP_015634849.1\|2269086_2270256_-\|tail	phage tail sheath protein	Q9ZXK4	Pseudomonas_virus	2.5e-170	76.4
WP_041752073.1\|2270347_2270770_-\|tail	tail fiber assembly protein	A0A291LAV4	Bordetella_phage	1.0e-25	50.0
WP_015634851.1\|2270779_2272327_-\|tail	phage tail protein	A4PE45	Ralstonia_virus	3.3e-69	48.7
WP_015634852.1\|2272323_2272941_-\|tail	phage tail protein I	A0A2H4JAU2	uncultured_Caudovirales_phage	8.9e-82	70.2
WP_015634853.1\|2272940_2273852_-\|plate	baseplate J/gp47 family protein	Q9ZXK8	Pseudomonas_virus	8.1e-124	75.3
WP_015634854.1\|2273848_2274193_-	GPW/gp25 family protein	Q9ZXK9	Pseudomonas_virus	2.2e-34	63.2
WP_015634855.1\|2274189_2274762_-\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	3.4e-51	63.7
WP_134532572.1\|2274878_2275436_+	hypothetical protein	NA	NA	NA	NA
WP_041752078.1\|2275443_2275902_-	phage virion morphogenesis protein	Q9ZXL2	Pseudomonas_virus	7.1e-44	62.6
WP_041752080.1\|2275894_2276347_-\|tail	phage tail protein	Q9ZXL3	Pseudomonas_virus	1.0e-47	66.0
WP_015634857.1\|2276443_2276887_-	phage P2 LysB-like protein LysB	Q9ZXL5	Pseudomonas_virus	1.8e-31	57.9
WP_015634858.1\|2276883_2277363_-	hypothetical protein	NA	NA	NA	NA
WP_015634859.1\|2277359_2277566_-	hypothetical protein	NA	NA	NA	NA
WP_015634860.1\|2277562_2278405_-	N-acetylmuramidase family protein	Q9ZXL6	Pseudomonas_virus	1.8e-101	69.5
WP_041752082.1\|2278401_2278716_-\|holin	phage holin, lambda family	A0A2H4JFM8	uncultured_Caudovirales_phage	9.2e-27	56.7
WP_015634862.1\|2278770_2278983_-\|tail	tail protein X	Q9ZXL9	Pseudomonas_virus	3.8e-24	79.1
WP_015634863.1\|2278982_2279444_-\|head	head completion/stabilization protein	Q9ZXM1	Pseudomonas_virus	6.0e-51	65.4
WP_015634864.1\|2279559_2280267_-\|terminase	terminase endonuclease subunit	A0A2H4J948	uncultured_Caudovirales_phage	1.7e-73	64.9
WP_015634865.1\|2280278_2281286_-\|capsid	phage major capsid protein, P2 family	A4PE30	Ralstonia_virus	9.9e-123	65.2
WP_041752737.1\|2281330_2282209_-\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	7.9e-76	57.2
WP_015634867.1\|2282360_2284118_+\|terminase	terminase ATPase subunit family protein	Q9ZXM5	Pseudomonas_virus	7.2e-286	80.9
WP_015634868.1\|2284117_2285167_+\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	8.3e-165	83.9
WP_015634869.1\|2286147_2287008_-	phage antirepressor N-terminal domain-containing protein	A0A088CD55	Shigella_phage	6.9e-32	47.9
WP_015634870.1\|2288052_2288631_-	hypothetical protein	NA	NA	NA	NA
WP_015634871.1\|2288657_2290136_-	AAA family ATPase	NA	NA	NA	NA
WP_015634872.1\|2290869_2291769_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_015634873.1\|2291752_2292856_-	hypothetical protein	NA	NA	NA	NA
WP_015634874.1\|2292852_2294925_-	glycosyltransferase	NA	NA	NA	NA
WP_041752085.1\|2294950_2295898_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_015634876.1\|2296002_2298192_-	glycosyltransferase	NA	NA	NA	NA
WP_015634877.1\|2298184_2298877_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_015634878.1\|2298882_2300259_-	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA
WP_011060350.1\|2300255_2301530_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	9.6e-06	21.9
WP_015634879.1\|2301519_2302335_-	ABC transporter permease	NA	NA	NA	NA
WP_041752087.1\|2302617_2303268_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_015634881.1\|2303365_2304226_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_015634882.1\|2304411_2305983_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	3.9e-17	37.6
WP_011060355.1\|2305986_2306508_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015634883.1\|2306543_2307119_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015634884.1\|2307321_2308146_+	arylamine N-acetyltransferase	NA	NA	NA	NA
WP_011060358.1\|2308614_2310156_+	purine permease	NA	NA	NA	NA
WP_041752088.1\|2310219_2310807_-	SH3 domain-containing protein	NA	NA	NA	NA
WP_015634886.1\|2310900_2312058_-	MFS transporter	NA	NA	NA	NA
WP_011060361.1\|2312928_2313162_+	hypothetical protein	NA	NA	NA	NA
WP_011060362.1\|2313168_2313366_-	hypothetical protein	NA	NA	NA	NA
WP_015634888.1\|2313497_2314694_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_011060364.1\|2315031_2317047_+	excinuclease ABC subunit B	NA	NA	NA	NA
WP_011060365.1\|2317159_2318710_-	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_041752090.1\|2318699_2319746_-	HlyD family secretion protein	NA	NA	NA	NA
WP_041117010.1\|2319978_2321460_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
2321124:2321139	attR	NA	NA	NA	NA
WP_011060368.1\|2322435_2322975_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_015634891.1\|2323001_2323835_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_011060370.1\|2323882_2324317_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_015634892.1\|2324461_2325421_+\|tRNA	tRNA-dihydrouridine synthase	NA	NA	NA	NA

DBSCAN-SWA_3

4269102 : 4308892

Pseudomonas_phage(51.22%)

capsid,holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011062013.1\|4269102_4269774_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	9.9e-111	95.1
WP_041752365.1\|4270139_4270433_-	hypothetical protein	A0A2H4JER5	uncultured_Caudovirales_phage	5.2e-32	60.8
WP_015636151.1\|4270546_4271254_+	SOS response-associated peptidase family protein	A0A2H4J991	uncultured_Caudovirales_phage	5.5e-112	83.6
WP_080644461.1\|4271827_4272241_+	hypothetical protein	NA	NA	NA	NA
WP_041752366.1\|4272334_4272835_-	DUF2514 domain-containing protein	Q6J1Q4	Burkholderia_virus	3.6e-09	40.5
WP_015636152.1\|4272831_4273458_-	glycoside hydrolase family 19 protein	A0A2H4J3Y3	uncultured_Caudovirales_phage	2.7e-94	80.3
WP_015636153.1\|4273533_4274223_-	hypothetical protein	NA	NA	NA	NA
WP_015636154.1\|4274509_4277599_-	host specificity protein J	Q3HQU5	Burkholderia_phage	2.5e-286	47.5
WP_015636155.1\|4277656_4278229_-\|tail	tail assembly protein	A0A2I6PI69	Pseudomonas_phage	3.3e-46	53.8
WP_015636156.1\|4278238_4279003_-	C40 family peptidase	A0A2I6PI52	Pseudomonas_phage	3.2e-81	54.1
WP_015636157.1\|4279005_4279689_-\|tail	phage minor tail protein L	A0A2I6PIA7	Pseudomonas_phage	9.2e-88	67.0
WP_051167112.1\|4279740_4280154_-	hypothetical protein	NA	NA	NA	NA
WP_015636158.1\|4280140_4281352_-	hypothetical protein	A0A2I6PI67	Pseudomonas_phage	2.7e-05	60.9
WP_015636159.1\|4281348_4281687_-\|tail	phage tail protein	A0A1B0VMG7	Pseudomonas_phage	1.6e-32	56.2
WP_015636160.1\|4281733_4284994_-\|tail	phage tail tape measure protein	A0A1B0VMG8	Pseudomonas_phage	8.9e-173	50.0
WP_080644480.1\|4285067_4285436_-	superinfection immunity protein	A0A2P1MXA5	Escherichia_phage	4.7e-06	46.3
WP_015636161.1\|4285611_4286427_-	KilA-N domain-containing protein	A0A2H4IZE1	uncultured_Caudovirales_phage	4.3e-108	73.2
WP_015636162.1\|4286423_4287347_-	Bro-N domain-containing protein	A0A2H4JG39	uncultured_Caudovirales_phage	1.4e-62	51.9
WP_080644462.1\|4287690_4288176_+	helix-turn-helix transcriptional regulator	A0A2H4IZD1	uncultured_Caudovirales_phage	7.6e-28	54.0
WP_015636164.1\|4288221_4288467_-	DUF1799 domain-containing protein	A0A2H4J4F7	uncultured_Caudovirales_phage	6.1e-18	55.1
WP_011062036.1\|4288532_4288913_-\|tail	phage tail assembly chaperone	A0A2H4IYQ5	uncultured_Caudovirales_phage	5.7e-31	53.5
WP_015636165.1\|4288916_4289570_-\|tail	phage tail protein	A0A1S5R1H0	Pseudomonas_phage	5.4e-53	49.8
WP_015636166.1\|4289643_4290060_-	DUF4128 domain-containing protein	A0A2H4J4N2	uncultured_Caudovirales_phage	1.1e-46	64.5
WP_015636167.1\|4290056_4290710_-	hypothetical protein	A0A1B0VMI1	Pseudomonas_phage	1.2e-105	87.0
WP_015636168.1\|4290706_4291075_-	hypothetical protein	A0A1B0VRJ4	Pseudomonas_phage	4.1e-50	80.0
WP_015636169.1\|4291091_4291595_-	hypothetical protein	A0A1B0VND3	Pseudomonas_phage	3.1e-77	87.4
WP_015636170.1\|4291598_4291907_-	hypothetical protein	A0A2H4J0G3	uncultured_Caudovirales_phage	7.2e-08	55.8
WP_015636171.1\|4291958_4292906_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	4.8e-127	69.6
WP_015636172.1\|4292917_4293634_-	hypothetical protein	A0A2H4J0Y0	uncultured_Caudovirales_phage	6.1e-34	54.5
WP_015636173.1\|4293743_4294211_+	hypothetical protein	NA	NA	NA	NA
WP_015636174.1\|4294224_4295313_-\|capsid	minor capsid protein	A0A1B0VMF3	Pseudomonas_phage	5.3e-146	71.7
WP_015636175.1\|4295287_4296751_-	DUF4055 domain-containing protein	A0A2H4J5M6	uncultured_Caudovirales_phage	1.4e-173	62.9
WP_015636176.1\|4296747_4298049_-	hypothetical protein	A0A1B1P9C9	Acinetobacter_phage	1.5e-147	59.4
WP_015636177.1\|4298035_4298497_-	DUF2280 domain-containing protein	A0A1B0VMH2	Pseudomonas_phage	1.3e-48	78.1
WP_015636178.1\|4298528_4299152_-	hypothetical protein	A0A1B0VRJ1	Pseudomonas_phage	1.2e-110	92.8
WP_041752375.1\|4299225_4299432_+	hypothetical protein	NA	NA	NA	NA
WP_041752376.1\|4299486_4299873_+	hypothetical protein	A0A0S2SYH9	Pseudomonas_phage	3.5e-44	71.1
WP_011062053.1\|4299914_4300238_-\|holin	phage holin, lambda family	A0A1W6JTC7	Pseudomonas_phage	5.7e-24	52.5
WP_015636179.1\|4300320_4300683_-	hypothetical protein	NA	NA	NA	NA
WP_041752765.1\|4300995_4301355_-	hypothetical protein	NA	NA	NA	NA
WP_015636180.1\|4301665_4302169_-	SHOCT domain-containing protein	A0A1D9C9Q4	Salinivibrio_phage	1.5e-42	56.3
WP_015636181.1\|4302435_4303122_-	hypothetical protein	NA	NA	NA	NA
WP_015636182.1\|4303118_4303733_-	recombination protein NinG	A0A125RNK9	Pseudomonas_phage	1.7e-61	62.1
WP_015636183.1\|4303729_4304317_-	DUF1367 family protein	Q9MC49	Pseudomonas_phage	7.8e-96	85.1
WP_051167113.1\|4304309_4304597_-	hypothetical protein	NA	NA	NA	NA
WP_015636184.1\|4304596_4305394_-	hypothetical protein	A0A2D1GNB3	Pseudomonas_phage	4.5e-102	72.0
WP_015636185.1\|4305390_4306284_-	hypothetical protein	A0A1J0MCP9	Streptomyces_phage	2.5e-16	42.5
WP_121528536.1\|4306283_4306994_-	Rha family transcriptional regulator	A0A2H4J5H6	uncultured_Caudovirales_phage	3.8e-36	38.8
WP_015636187.1\|4307140_4307758_-	hypothetical protein	NA	NA	NA	NA
WP_080644463.1\|4307812_4308034_-	helix-turn-helix domain-containing protein	A0A2D1GND2	Pseudomonas_phage	6.5e-19	60.3
WP_121528533.1\|4308280_4308892_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	2.5e-68	73.3

DBSCAN-SWA_4

4313165 : 4325920

uncultured_Caudovirales_phage(50.0%)

integrase

attL 4314668:4314681|attR 4332315:4332328

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_121528535.1\|4313165_4313996_+	ParB N-terminal domain-containing protein	A0A1B0YZX8	Pseudomonas_phage	1.6e-86	62.2
WP_041752384.1\|4314104_4314620_-	hypothetical protein	NA	NA	NA	NA
4314668:4314681	attL	NA	NA	NA	NA
WP_134532617.1\|4314895_4315174_+	hypothetical protein	NA	NA	NA	NA
WP_041752385.1\|4315170_4315593_+	hypothetical protein	NA	NA	NA	NA
WP_015636192.1\|4315589_4315781_+	hypothetical protein	A0A1B0VMB8	Pseudomonas_phage	2.1e-10	51.6
WP_015636193.1\|4315777_4315978_+	hypothetical protein	NA	NA	NA	NA
WP_015636195.1\|4316259_4316988_+	hypothetical protein	A0A2H4J2D5	uncultured_Caudovirales_phage	6.3e-95	73.9
WP_015636196.1\|4316984_4317548_+	siphovirus Gp157 family protein	A0A2H4IZG3	uncultured_Caudovirales_phage	5.1e-68	71.1
WP_015636197.1\|4317555_4318074_+	hypothetical protein	NA	NA	NA	NA
WP_015636198.1\|4318155_4318479_+	hypothetical protein	A0A2H4J0R5	uncultured_Caudovirales_phage	2.1e-05	32.0
WP_015636199.1\|4318485_4319547_-	hypothetical protein	NA	NA	NA	NA
WP_041752386.1\|4319639_4319864_-	hypothetical protein	NA	NA	NA	NA
WP_015636200.1\|4319943_4322013_+	DNA cytosine methyltransferase	Q5QF27	Pseudomonas_virus	3.6e-228	58.4
WP_051167125.1\|4322217_4322538_+	hypothetical protein	A0A2H4J7B8	uncultured_Caudovirales_phage	1.8e-30	63.2
WP_041752387.1\|4322599_4322980_+	DUF2591 family protein	J7I4M3	Pseudomonas_phage	2.9e-11	39.7
WP_015636203.1\|4323124_4323877_+	phosphoadenosine phosphosulfate reductase family protein	NA	NA	NA	NA
WP_015636204.1\|4323935_4324583_+	hypothetical protein	A0A0U4JX72	Pseudomonas_phage	7.4e-63	49.3
WP_015636205.1\|4324626_4324869_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_015636206.1\|4324870_4325920_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	6.3e-104	56.6
4332315:4332328	attR	NA	NA	NA	NA

DBSCAN-SWA_5

4411822 : 4418042

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019092899.1\|4411822_4412215_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.9e-54	78.3
WP_015636278.1\|4412216_4412579_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	3.1e-42	70.8
WP_015636279.1\|4412578_4412875_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.9e-29	66.7
WP_015636280.1\|4412871_4413207_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	3.0e-44	77.5
WP_015636281.1\|4413203_4414205_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	2.4e-169	86.8
WP_015636282.1\|4414293_4415295_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_011062163.1\|4415366_4416761_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_015636283.1\|4416761_4418042_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.7e-98	54.1

DBSCAN-SWA_6

4504945 : 4548750

uncultured_Caudovirales_phage(25.0%)

coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011062236.1\|4504945_4505935_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_041752419.1\|4505967_4508325_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_015636325.1\|4508444_4509236_-	molecular chaperone	NA	NA	NA	NA
WP_015636326.1\|4509282_4509783_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_015636327.1\|4509787_4510324_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_011062241.1\|4510344_4510881_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_019095134.1\|4510983_4511511_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_015636330.1\|4511724_4512855_+	cell division protein ZapE	NA	NA	NA	NA
WP_015636331.1\|4512851_4513466_+	hypothetical protein	NA	NA	NA	NA
WP_015636332.1\|4513452_4513821_+	hypothetical protein	NA	NA	NA	NA
WP_041752421.1\|4513910_4515224_+	protein kinase	NA	NA	NA	NA
WP_011062247.1\|4515289_4515994_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_011062248.1\|4516102_4517494_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_015636334.1\|4517592_4518918_-	MFS transporter	NA	NA	NA	NA
WP_011062250.1\|4519204_4520092_+	LysR family transcriptional regulator	A0A2H4J8I9	uncultured_Caudovirales_phage	9.6e-05	34.1
WP_015636335.1\|4520263_4521124_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_015636336.1\|4521234_4522344_+	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA
WP_015636337.1\|4522445_4523273_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA
WP_015636338.1\|4523474_4524029_+	cytochrome b	NA	NA	NA	NA
WP_011062255.1\|4524019_4524949_-	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_011062256.1\|4525156_4527196_-	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_011062257.1\|4527355_4528501_-	EstA family serine hydrolase	NA	NA	NA	NA
WP_015636339.1\|4528649_4529717_-	fatty acid desaturase	NA	NA	NA	NA
WP_015636340.1\|4530226_4531357_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_015636341.1\|4531361_4532402_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_015636343.1\|4532770_4533859_+	hypothetical protein	NA	NA	NA	NA
WP_011062263.1\|4533870_4534341_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_015636344.1\|4534501_4537177_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA
WP_015636345.1\|4537182_4538028_-	DUF2242 domain-containing protein	NA	NA	NA	NA
WP_011062266.1\|4538120_4539020_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_015636346.1\|4539144_4540350_+	MFS transporter	NA	NA	NA	NA
WP_015636347.1\|4540408_4541287_-	sterol desaturase family protein	NA	NA	NA	NA
WP_015636348.1\|4541353_4542319_+	AraC family transcriptional regulator ligand-binding domain-containing protein	NA	NA	NA	NA
WP_015636349.1\|4542388_4544260_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA
WP_011062271.1\|4544486_4544759_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	2.3e-18	57.3
WP_011062272.1\|4544907_4547304_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.5e-222	52.1
WP_011062273.1\|4547466_4548750_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.6e-139	59.8

DBSCAN-SWA_7

6305563 : 6365955

Burkholderia_phage(22.22%)

holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041752647.1\|6305563_6306064_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_011063890.1\|6306301_6307189_+	acyltransferase	NA	NA	NA	NA
WP_015637287.1\|6307189_6308347_-	glutathionylspermidine synthase family protein	Q19CT2	Aeromonas_virus	1.0e-67	36.5
WP_015637288.1\|6308343_6309057_-	DUF1190 domain-containing protein	NA	NA	NA	NA
WP_011063893.1\|6309067_6309496_-	DUF350 domain-containing protein	NA	NA	NA	NA
WP_015637289.1\|6309634_6310201_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_015637290.1\|6310424_6311069_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_015637291.1\|6311065_6311740_+	anti-sigma factor	NA	NA	NA	NA
WP_041120724.1\|6311875_6312454_+	hypothetical protein	NA	NA	NA	NA
WP_015637293.1\|6312517_6312832_-	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_015637294.1\|6312797_6313088_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_015637295.1\|6313540_6313813_+	hypothetical protein	NA	NA	NA	NA
WP_015637296.1\|6313913_6315113_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	6.5e-12	28.9
WP_041752650.1\|6315283_6316141_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_015637298.1\|6316289_6316922_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_015637299.1\|6317055_6320073_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_011063902.1\|6320069_6320372_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_011063903.1\|6320386_6321637_-	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_015637300.1\|6321660_6322914_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	6.6e-100	53.0
WP_041120160.1\|6323226_6323967_-	conjugal transfer protein TraX	NA	NA	NA	NA
WP_015637302.1\|6324067_6325108_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_015637303.1\|6325383_6326829_+	cytosine permease	NA	NA	NA	NA
WP_011063908.1\|6326825_6327653_+	carbon-nitrogen hydrolase	M1I5Z5	Acanthocystis_turfacea_Chlorella_virus	1.3e-19	34.1
WP_011063909.1\|6327731_6328832_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_015637304.1\|6329123_6330419_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_011063912.1\|6332180_6332951_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_015637306.1\|6332960_6334181_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_015637307.1\|6334180_6336130_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_015637308.1\|6336244_6338305_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_011063916.1\|6338320_6338851_-	hypothetical protein	NA	NA	NA	NA
WP_011063917.1\|6339011_6339989_-	dipeptidase	NA	NA	NA	NA
WP_015637309.1\|6340224_6340626_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_015637310.1\|6340734_6341085_-	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_041120175.1\|6341081_6341591_-	nucleoside deaminase	NA	NA	NA	NA
WP_011063921.1\|6341646_6342984_-	purine permease	NA	NA	NA	NA
WP_011063922.1\|6343165_6344080_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011063923.1\|6344179_6344434_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	6.1e-21	57.1
WP_015637312.1\|6344417_6344741_+	helix-turn-helix transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	1.2e-32	69.4
WP_015637313.1\|6344775_6345192_+	DUF3010 family protein	NA	NA	NA	NA
WP_015637314.1\|6345229_6346189_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_011063927.1\|6346383_6347328_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015637315.1\|6347416_6348304_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_015637316.1\|6348463_6349429_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_015637317.1\|6349537_6350014_+	thioesterase family protein	NA	NA	NA	NA
WP_015637318.1\|6350038_6351199_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
WP_015637319.1\|6351453_6351882_-	DUF4952 domain-containing protein	NA	NA	NA	NA
WP_015637320.1\|6352196_6352460_+	hypothetical protein	NA	NA	NA	NA
WP_041752655.1\|6352522_6352969_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011063935.1\|6352969_6354073_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_011063936.1\|6354485_6355862_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_011063937.1\|6356289_6357246_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_019095263.1\|6357316_6358162_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_011063939.1\|6358158_6359337_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.6e-26	37.4
WP_011063940.1\|6359502_6361512_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	1.2e-18	26.8
WP_011063941.1\|6361941_6362535_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_011063942.1\|6362643_6364116_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_015637324.1\|6364251_6365955_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	2.2e-50	30.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_021237

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection