CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_021352	Corynebacterium glutamicum SCgG2, complete genome	3 crisprs	cas3,DEDDh,csa3,WYL,PrimPol,DinG	0	0	0	0

Cas Category Instructions

Results visualization

1. NC_021352

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CRISPR-Cas detection and classification

Crispr_ID: NC_021352_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021352_1

291735-291834

Orphan

Consensus_repeat	Method
TTGGTACACCAGCGAACGAAAGTGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021352_1

>merge|NC_021352|1|291735-291834|CRISPRCasFinder
TTGGTACACCAGCGAACGAAAGTGGGCGGGCTTGGTGCCGGGAAGGTCTGTTTTGGCGGGGAGTCCGCCTTGCTTGGTACACCAGCGAACGAAAGTGGGC

>NC_021352|1|1|291735-291834|CRISPRCasFinder
TTGGTACACCAGCGAACGAAAGTGGGC	GGGCTTGGTGCCGGGAAGGTCTGTTTTGGCGGGGAGTCCGCCTTGC
TTGGTACACCAGCGAACGAAAGTGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_021352.1\|WP_003857667.1\|286294_286522_-\|hypothetical-protein	unknown	unknown	unknown
NC_021352.1\|WP_003857658.1\|288438_288873_+\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|225155
NC_021352.1\|WP_006285442.1\|289921_290854_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|224137
NC_021352.1\|WP_003857630.1\|300148_301222_-\|molybdopterin-biosynthesis-protein-MoeB	unknown	unknown	gnl\|CDD\|235526
NC_021352.1\|WP_074469824.1\|286557_287049_+\|hypothetical-protein	unknown	unknown	unknown
NC_021352.1\|WP_074469822.1\|295060_296041_-\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176180
NC_021352.1\|WP_003857661.1\|287045_287501_+\|hypothetical-protein	unknown	unknown	unknown
NC_021352.1\|WP_003857654.1\|289289_289925_+\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167
NC_021352.1\|WP_074469823.1\|292849_293755_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NC_021352.1\|WP_006285444.1\|290875_291475_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203
NC_021352.1\|WP_003857656.1\|288883_289288_+\|hypothetical-protein	unknown	unknown	unknown
NC_021352.1\|WP_003857649.1\|292047_292839_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224057
NC_021352.1\|WP_003857669.1\|284751_286218_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NC_021352.1\|WP_003857640.1\|296037_296565_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378933
NC_021352.1\|WP_003857637.1\|296838_297120_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|223706
NC_021352.1\|WP_003857635.1\|298698_298947_-\|hypothetical-protein	unknown	unknown	unknown
NC_021352.1\|WP_003857660.1\|287526_288423_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377943
NC_021352.1\|WP_050816938.1\|293858_295064_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|223594
NC_021352.1\|WP_003857636.1\|297116_298604_-\|sodium:alanine-symporter-family-protein	unknown	unknown	gnl\|CDD\|224040
NC_021352.1\|WP_003857633.1\|299263_300157_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379128

Protein	Function_ID	Function_description	E-value
NC_021352.1\|WP_003857658.1\|288438_288873_+\|GtrA-family-protein	gnl\|CDD\|225155	COG2246, COG2246, Predicted membrane protein [Function unknown].	3.35176e-27
NC_021352.1\|WP_003857630.1\|300148_301222_-\|molybdopterin-biosynthesis-protein-MoeB	gnl\|CDD\|235526	PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated.	0
NC_021352.1\|WP_074469823.1\|292849_293755_-\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	5.48127e-71
NC_021352.1\|WP_074469822.1\|295060_296041_-\|zinc-binding-dehydrogenase	gnl\|CDD\|176180	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	4.60587e-160
NC_021352.1\|WP_006285442.1\|289921_290854_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	2.809e-62
NC_021352.1\|WP_003857654.1\|289289_289925_+\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	4.66058e-72
NC_021352.1\|WP_006285444.1\|290875_291475_-\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.26193e-34
NC_021352.1\|WP_003857649.1\|292047_292839_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224057	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	5.01902e-120
NC_021352.1\|WP_003857669.1\|284751_286218_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	5.32551e-60
NC_021352.1\|WP_003857640.1\|296037_296565_-\|hypothetical-protein	gnl\|CDD\|378933	pfam12725, DUF3810, Protein of unknown function (DUF3810). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 333 and 377 amino acids in length. There is a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterized family of peptidase enzymes.	0.00347655
NC_021352.1\|WP_003857637.1\|296838_297120_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|223706	COG0633, Fdx, Ferredoxin [Energy production and conversion].	7.41524e-16
NC_021352.1\|WP_003857660.1\|287526_288423_+\|hypothetical-protein	gnl\|CDD\|377943	pfam07929, PRiA4_ORF3, Plasmid pRiA4b ORF-3-like protein. Members of this family are similar to the protein product of ORF-3 found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumorigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process. Other proteins found in this family are annotated as being putative TnpR resolvases, but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor and in fact carries a LexA DNA binding domain (pfam01726), but no references were found to expand on this.	0.00066074
NC_021352.1\|WP_050816938.1\|293858_295064_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|223594	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones].	4.86598e-64
NC_021352.1\|WP_003857636.1\|297116_298604_-\|sodium:alanine-symporter-family-protein	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	0
NC_021352.1\|WP_003857633.1\|299263_300157_+\|hypothetical-protein	gnl\|CDD\|379128	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin. AbiEi_4 is the cognate antitoxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	0.000123752

>NC_021352.1|WP_006285444.1|290875_291475_-|VOC-family-protein
MGTQIDHIVIAAPNLEDLVSRFEKLTGVKAVAGGRHDTGTANALVPLKEPKGSYLELIGPDPEADAVTQDNFAIATTQSTEPRVAAWCVRPDDLEALAAKRGTESQLMSRHTPEGTTLTWRLILPEPGVDFAPVPFAIDWLGSPHPSKVTEPQVSVHSFTVYGHSEPDELPEPAIFQEGEPLLELVLESPKGRVNLSDL
>NC_021352.1|WP_006285442.1|289921_290854_-|glycosyltransferase-family-2-protein
MAKTGTHLQHGIDVAAVIVTHNRVELLRHSLEVVANQTYPVKHIVVVDNGADPDVEKLVLEVAGDRAVYTPSRTNLGGGGGFAFGFLTALALGADAVWCADDDGRPEGPEVLKTLIDAASRHNLEEVSPVVCNADDPERLAFPLRRGLEWRRMRSELIDPANPEDDLLPGIASLFNGALISAYAMERIGVPDYRLFIRGDEVEYHRRLVRSGLPFGTCLTTAYLHPDGSDEFKPILGGRMHTQYPDNDFKRFFTYRNRGYLMSQPGMRKLLPQEYARFAWFFLVQKRDVKGFREWLRLHKLGRDEKFNRP
>NC_021352.1|WP_003857654.1|289289_289925_+|MOSC-domain-containing-protein
MPGLVLSTNVAHIQQDPGGDDRISGINKLPVATGIDVFIPGPNYGDGSGVVGDAIGDSLHHGGAHKAIYAYSREELDFFDPTYRNGYFGENLTTSGIVLEDLLINQQVRIGTTLLEVSIPRRPCRTFAHWLDIKGWLKTFTQRGLPGSYFRVIEEGHINPGDPIEVLQAPDHDITMSMAFRAKMGNKDLARRVVAANCLPARYHEELLKLI
>NC_021352.1|WP_003857656.1|288883_289288_+|hypothetical-protein
MKTFNPTMIAGLIGVLYFVLLTLIFSIQDMELAAEIAFGIVTIVGLIAVWDNFRDRNNSTWKTWTGLVGGLLIAVPGICLLVGNLVLLAVDGNPSTMVNTLLSVAGIGAIFLLPIGIIMCLIAGFNRFYAALKV
>NC_021352.1|WP_003857658.1|288438_288873_+|GtrA-family-protein
MPENPDVTIVRPMSLKTQAFRFILTGGLSAIVDLGLLSLLQLVFGLPVPVARTISFIAGTTTAYMINRRWTFQAESSTSRFLAVVALYGVTFLINIGLQTLCSALFENWGWNEAVAMVCAFVIAQGTGTVINFIVQRTIIFRVK
>NC_021352.1|WP_003857660.1|287526_288423_+|hypothetical-protein
MPTNYARDNVISLASAREQRSGKPEPKPELTLIVRATNVQADGEVHRQIGLNSAMSLDELHNVLNIVFGVGGEQSPWRFEDQFHQPSAPDTNLGELLPEPGDFLFYFWGLWQFNLQCVEMYPRDNGTPRALCIGGSGGLGDDFDQATINAELTGTDTIRDVLSGVRPEVIDLVDRTGVFDFIPLLQALDLKREPLIDATRHHTCRMLPVENSAEASDAFWSCVLALSCLGNDELFIEVIESTMSTLGWVADDGSPLRAPEITSACEASLKILAEIGGYGPEQLAPVDRLDIYRELLCF
>NC_021352.1|WP_003857661.1|287045_287501_+|hypothetical-protein
MTYPVLSVLDNSGDHNIIWHVQTYPAALPTGAWIADEQQLTDLLKDTVVFLTPGSTAPENSPVATIEGVRVGVDKQVAEYNKHGIRLPSLGARTVEAQYRGEPEAEAAWRTALELAEIAGGWLEIEAKRRARKALAEAFGAEVQPLPLDTE
>NC_021352.1|WP_074469824.1|286557_287049_+|hypothetical-protein
MDTRMRLQVAAGSALVGAGVAVNDYVQSPVRRAIGYGALALSGATVIAMGQDPTGERSIIAKDSATMLDQIRQEIGDLGVTPGPESDVDAITERGPLVTWLLLAVFVVAFFTLAYFSMRMDVAVMRRIAKFFEKRGASRPFTCTGMVYAAFIYAICELEARTK
>NC_021352.1|WP_003857667.1|286294_286522_-|hypothetical-protein
MFERFKKAKAPEVHIAAERTNLPLNDFMTRLFAQELPLLDSTSRSEVYRLLREYDGPTISSQEEIPAEIRELMDL
>NC_021352.1|WP_003857669.1|284751_286218_-|FAD-binding-oxidoreductase
MNSSHGTSSPGASAGAHGALPLEAQKLNGWGRTAPTTAEVLSTPDLDIIVDAVRQVAEQNDSKPDYLKRGVIARGMGRSYGDPAQNAGGLVIDMQPLNKIHSIDPDSAIVDVDGGVTLDQLMKAALPYGLWVPVLPGTRQVTIGGAIGPDIHGKNHHSAGSFGDHVVSMELLVADGRILHLEPEGTAEDPQGDLFWATVGGMGLTGIIVRARIRMTKTETAYFIADTDRTNNLEETVAFHSDGSEHNYTYSSAWFDVISPEPKLGRSTISRGSLATLAQLEELAPKLAKDPLKFNAPQLMKVPDIFPSWTLNKLTLSAVGVAYYAMGAPAKNQVKNLTQFYQPLDLIGEWNRGYGSKGFLQYQFVVPTEAVEPFKDIIRDMQKSGHYSALNVFKLFGPGNRAPLSYPMPGWNVCVDFPIRPGLGAFLDDLDKRVMEFGGRLYLAKESRTSAENFHAMYPGMEGWLKTRNEIDPTGVFASDMSRRLELS
>NC_021352.1|WP_003857649.1|292047_292839_-|ABC-transporter-ATP-binding-protein
MVSIDTYNACVDFPIFDAKSRSMKKAFLGAAGGAIGRNQDNVVVVEALRDINLHLREGDRVGLVGHNGAGKSTLLRLLSGIYEPTRGSADIRGRVAPVFDLGVGMDPEISGYENIIIRGLFLGQTRKQMKAKMEEIADFTELGEYLSMPLRTYSTGMRIRLALGVVTSIEPEILLLDEGIGAVDAAFMAKARDRLQALVERSGILVFASHSNDFLAQLCNTALWVDHGQIRDAGLVPDIVESYEGKGAGDHVRRLLTRMEEEK
>NC_021352.1|WP_074469823.1|292849_293755_-|ABC-transporter-permease
MSYVQEQSKQKDLQADIARITAVKSDTVPNSQSMTFGAAWNDIVRGFKQHELWLQLGWQDIKQRYRRSVLGPLWITIATGVMALALGLLYSVLFKIPIAEFLPHVTVGLIIWNFISGCIKEGSDIFIDNEGLIKQLPSALSVHVYRLVWKQALFLAHNLVIWVILMMIFPRPLGWDVLLIIPAMFLLVINGVWVVMFFGIIATRYRDVSPLLEAGTQLLFYVTPIVWMTSTLQSQSAEIGNRARLAELNPLYHYLEIVRAPMIGADLPAYHWWIVLAFTFVGLGLALLAMKQWRFRVSYWV
>NC_021352.1|WP_050816938.1|293858_295064_+|aminotransferase-class-V-fold-PLP-dependent-enzyme
MLWRLKGVPFVGFDVARVRGLYTSLGDGWTYLNSHQIPQVPERVASGVAAAFRTHAQISEVTSRPIAVDQLEAAREAVASLAGVDPDCVVLGPTRQFLAHTLARGLGGFVRRKAGVVLSRADADWLTAPFRSLDGVFSWAEPDLGTGMLPDWQYEKLVDGSTRLVVLSAAHPLLGTVAPVGKIVDKVRARSRAWVLVDATTYAAYRPLRLDEWEADIVMLDLGELGGPQISALIFRDTSMFPRLDRTVPLELPASSLPHGLLGGVPNLVRHLGNLDENAPSVVEAMGEMAKFHKGLFEHLVESLEGLHAVHIVGISGDAAGQDAAFLDRVPRLTFTMEGVPADMVYRRLVDNRLVTTVSPADPLLDAMGVTEAGGSITIGLSPFSTHYEVDQLTRVLASLA
>NC_021352.1|WP_074469822.1|295060_296041_-|zinc-binding-dehydrogenase
MTKTTRQTMQAIVQTEEKVTASLELQEVPVPTLKPGEVLVEVKAAGVNRADLLQTQGNYPVPAGASEILGLECAGVIVDAGDTGQTVGQEVACLLTGGGYAEFVAVPEGQLMPIPEGYSFVEAASIVEVACTVWSNIGMLAGLQKEDTFLIHGGAGGIGTFAIQMGKALGVTVAVTAGSTEKLKTCKNLGADILINYKEEDFAEVLKNKADVILDIIGAKYLSQNVKAMAKDAHMVVIGMQGGVKGELNLGHLLAKRGTISATALRGRDEADKARIVSSTVENIWPLLQSKEITPHIDHTLPLAEAAAALQKIQDGTITGKLVLTV
>NC_021352.1|WP_003857640.1|296037_296565_-|hypothetical-protein
MDVLKIAIIAAVMIGVPVLVIFLIVFAVHKLAKEVPQSGRRPGIGLGLLLGFVAGLIVWFVWLSWGGYYENEFGQMQGPYRPWQVVACGVTMVAVTVILGLWTRWTASGPFYSALGGTSGFSFAWAMDALPQDETGLSAFGLVMVIVGVGAGLNVVATLTSIGATIWNNRLPSNA
>NC_021352.1|WP_003857637.1|296838_297120_+|(2Fe-2S)-binding-protein
MALHTHKIDGETYAFSWSPTQTLLDALLQADLPARYSCMEGHCGTCQCTLTGGPSHMLNNEVLSNYEIVSENQVLACQTIRDADGPYHCSFDD
>NC_021352.1|WP_003857636.1|297116_298604_-|sodium:alanine-symporter-family-protein
MELLETFITDVINDNLWMILPFLLVAAGLYFGGRTLLVQIRMIPEMFKAVVEKPAKDGEFADKQDISAFKAFTISAASRVGTANVAGVALAITLGGPGAVFWMWIIALVGGATSFIESTLGQLWKVKDGDSYRGGPAYYMTLGLNARWLAVVFGVAITLTFGFVYNALQSNAVVEAITVSLGTPSTTAKAFVGLGMAGLSALVIFGGVQRIANVTQWMVPFMAGAYIIVGVVVIVINIQQVPTMINDIIAGAFGFRPVATASVWGAFWLAFMNGMRRGLFSNEAGEGSVPNAAATATVSHPVKQGLVQTLGVYFDTLLVCSITAFVILLSGVEYATGDIQSSSLTQSALASVVGGWGTHFITAVMFFLAFSSVLGNYYLAQANIQYFTDSKTVMTVFRLLVLLSVFSGAVASVPLIWALGDTFAGIMVLINLAAIIPLSGVAVKLLKNYTTQKKAGLDPVFHRDMMPEVRNIACWNGKDAATSNYHEAMEVIKKN
>NC_021352.1|WP_003857635.1|298698_298947_-|hypothetical-protein
MQPFGRLICPVSRAWIPARAKQGGFLDGKGYPRPKPALIDPPRAQQGKLARRSDHPELKPALFAPQRAKPGRLPSGAAHPGS
>NC_021352.1|WP_003857633.1|299263_300157_+|hypothetical-protein
MWTAKELIGMGYSRRRIDSLVKEGKLHRVLRGVYSLDPPSGEVVWSSIRLVRPSALLDGKSAVEVYQGVPLSLPVRVRVSTSNVLRGSWNVVARRSQRTDGIAHRGFRVVSLVDAVATCLDEGSVHPSDLRRLVEERYKSGSGVKQMAHDLKLLRTRRKAQLREFLEECIYGLDSGLEKVMVQELRDAGFRTRQNVVVEGYRWDIQVVGVALIDVDSRKYHQANGRNFIIDRWKSNEAAVQGHVPLRFTDDCVNYATREIIKLVKQVAEFKRKHPRRRVKTQGVGPVFRWHNALVLP
>NC_021352.1|WP_003857630.1|300148_301222_-|molybdopterin-biosynthesis-protein-MoeB
MKNLDIARYRRQIMLGEIGQQKQQSLFDAKVSVIGAGGLGSPALLYLAGAGVGHIHIIDDDLVDLSNLHRQVIHTTAGVGTPKAESAREAMLALNPSVKVTVSVRRLDWSNALSELADSDVILDGSDNFDTRHLASWAAAKLGIPHVWASILGFDAQLSVFHAGHGPIYEDLFPTPPPPGSVPSCSQAGVLGPVVGVMGSAMAMEALKIITGVGIPLIGKLGYYSSLDGTWEYIPVVGSPEVLERVLGSAGVSGISGGFGEVLDVPRVSALVDGVSLIDVREPSEFSAYSIPGAHNTPLSAIREGAIPPDVSAGKEVIVYCAAGVRSAQAIAILESAGYTGMSSLDGGIEGWLDSLG

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Crispr_ID: NC_021352_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021352_2

401911-402006

Orphan

Consensus_repeat	Method
TGCGTGGGCAGTGTGGTTTGGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021352_2

>merge|NC_021352|2|401911-402006|CRISPRCasFinder
TGCGTGGGCAGTGTGGTTTGGTTTTGGGGGCTCGGAACCGGTCACAGATGCCCACGATTGCGGTTTTTCCGTTGCGTGGGCAGTGTGGTTTGGTCT

>NC_021352|2|2|401911-402006|CRISPRCasFinder
TGCGTGGGCAGTGTGGTTTGGTTT	TGGGGGCTCGGAACCGGTCACAGATGCCCACGATTGCGGTTTTTCCGT
TGCGTGGGCAGTGTGGTTTGGTCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_021352.1\|WP_003855826.1\|408424_409000_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224975
NC_021352.1\|WP_003855817.1\|403436_403988_-\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|377816
NC_021352.1\|WP_003855806.1\|395818_396292_+\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239534
NC_021352.1\|WP_003855802.1\|393663_394608_+\|4-hydroxyphenyl-beta-ketoacyl-CoA-hydrolase	unknown	unknown	gnl\|CDD\|225070
NC_021352.1\|WP_011896605.1\|398485_399268_+\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NC_021352.1\|WP_003855815.1\|400662_401859_+\|MarP-family-serine-protease	unknown	unknown	gnl\|CDD\|367140
NC_021352.1\|WP_003855816.1\|402426_403422_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_021352.1\|WP_003855810.1\|397309_397993_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NC_021352.1\|WP_003855814.1\|399828_400572_+\|CoA-pyrophosphatase	unknown	unknown	gnl\|CDD\|239518
NC_021352.1\|WP_003855829.1\|409570_409870_+\|flp-pilus-assembly-TadE/G-like-family-protein	unknown	unknown	gnl\|CDD\|274799
NC_021352.1\|WP_003855818.1\|404152_404995_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
NC_021352.1\|WP_003855813.1\|399275_399836_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NC_021352.1\|WP_003855808.1\|396388_397234_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293836
NC_021352.1\|WP_003855821.1\|405475_406537_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274798
NC_021352.1\|WP_003855827.1\|409023_409224_+\|DUF4244-domain-containing-protein	unknown	unknown	gnl\|CDD\|379429
NC_021352.1\|WP_003855823.1\|406533_407667_+\|TadA-family-conjugal-transfer-associated-ATPase	unknown	unknown	gnl\|CDD\|200328
NC_021352.1\|WP_003855828.1\|409227_409548_+\|hypothetical-protein	unknown	unknown	unknown
NC_021352.1\|WP_003855811.1\|398254_398440_-\|hypothetical-protein	unknown	unknown	unknown
NC_021352.1\|WP_003855825.1\|407651_408428_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|227300
NC_021352.1\|WP_003855805.1\|394600_395797_+\|glutaryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173840

Protein	Function_ID	Function_description	E-value
NC_021352.1\|WP_003855826.1\|408424_409000_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	5.84741e-14
NC_021352.1\|WP_003855817.1\|403436_403988_-\|phage-holin-family-protein	gnl\|CDD\|377816	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III. Phage_holin_3_6 is a family of small hydrophobic proteins with two or three transmembrane domains of the Hol-X family. Holin proteins are produced by double-stranded DNA bacteriophages that use an endolysin-holin strategy to achieve lysis of their hosts. The endolysins are peptidoglycan-degrading enzymes that are usually accumulated in the cytosol until access to the cell wall substrate is provided by the holin membrane lesion.	1.12452e-31
NC_021352.1\|WP_003855806.1\|395818_396292_+\|MaoC-family-dehydratase	gnl\|CDD\|239534	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.	8.09464e-81
NC_021352.1\|WP_003855802.1\|393663_394608_+\|4-hydroxyphenyl-beta-ketoacyl-CoA-hydrolase	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	4.13475e-86
NC_021352.1\|WP_011896605.1\|398485_399268_+\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	2.04156e-106
NC_021352.1\|WP_003855815.1\|400662_401859_+\|MarP-family-serine-protease	gnl\|CDD\|367140	pfam02674, Colicin_V, Colicin V production protein. Colicin V production protein is required in E. Coli for colicin V production from plasmid pColV-K30. This protein is coded for in the purF operon.	1.76577e-18
NC_021352.1\|WP_003855816.1\|402426_403422_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.28355e-22
NC_021352.1\|WP_003855810.1\|397309_397993_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	1.34158e-55
NC_021352.1\|WP_003855814.1\|399828_400572_+\|CoA-pyrophosphatase	gnl\|CDD\|239518	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.	3.42473e-51
NC_021352.1\|WP_003855829.1\|409570_409870_+\|flp-pilus-assembly-TadE/G-like-family-protein	gnl\|CDD\|274799	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein. Members of this small, highly hydrophobic protein family occur in a pilus/secretion-like region that usually is next to an uncharacterized DEAH-box helicase, in Actinobacteria. Members show sequence similarity to the TadE-like family described by pfam07811. The function is unknown. [Unknown function, General].	9.82352e-08
NC_021352.1\|WP_003855818.1\|404152_404995_-\|HAD-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.43247e-74
NC_021352.1\|WP_003855813.1\|399275_399836_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.60616e-22
NC_021352.1\|WP_003855808.1\|396388_397234_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293836	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	2.59884e-64
NC_021352.1\|WP_003855821.1\|405475_406537_+\|hypothetical-protein	gnl\|CDD\|274798	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see ). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.	7.20215e-89
NC_021352.1\|WP_003855827.1\|409023_409224_+\|DUF4244-domain-containing-protein	gnl\|CDD\|379429	pfam14029, DUF4244, Protein of unknown function (DUF4244). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 66 and 95 amino acids in length. There is a conserved EYA sequence motif.	1.21917e-15
NC_021352.1\|WP_003855823.1\|406533_407667_+\|TadA-family-conjugal-transfer-associated-ATPase	gnl\|CDD\|200328	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.	7.72842e-154
NC_021352.1\|WP_003855825.1\|407651_408428_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	1.56045e-65
NC_021352.1\|WP_003855805.1\|394600_395797_+\|glutaryl-CoA-dehydrogenase	gnl\|CDD\|173840	cd01151, GCD, Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.	3.60113e-108

>NC_021352.1|WP_003855815.1|400662_401859_+|MarP-family-serine-protease
MLSPSLVVDAVIVLVMAFALWGGWRQGAFTSLLSTVGVVSGLVVGAAAAPFVMGLTDSTALRFLLAIGTVVLLVGLGNLIGAHLGAAIRDNIKFRSSRTLDSGLGAIFQVLATLIVVWLVAIPLATGLPGTVASGIRDSRILGFVDKYTPQGLDTLPSKIAAMLSESGLPPLISPFTGGSSVEVDAPEINVTNVDLVEAMRPSVIHVMGDAQECSRRLMGSGFVASPDYVVTNAHVVAGTSTVSLDTMIGTRSAEVVFYDPNLDIAVLYSPDLGLDPLPWASTPLDTGDEAIVMGFPQSGPFNASPARVRERIMITGSNIYANGQHEREAYSVRGSIQSGNSGGPMANEMGEVVGVVFGAAIDGSDTGYVLTAEEVQERIGDITSLTQPVDTMQCAVS
>NC_021352.1|WP_003855814.1|399828_400572_+|CoA-pyrophosphatase
MRNYPDLPHDFPGQNTELTPAKAPVWMHRLIDRIHAGHMANPLDGAEPLGDTDSEKRAAVLMLFSGSETSFDLPNDASVLLTHRTPTMRSHAGQIAFPGGRIDTTDTNAVDCAFREAWEETGLDRRTATPLAQLNEVHIRATGYPVYPILGHWHTPSPVAVASPHETDEVFDAPLYDLIDPKNRLMVGWREWHGPAFRINDYIIWGFTGGLLSAILDTAGWATEWDTDRIFDLENTLSTSRNNERMR
>NC_021352.1|WP_003855813.1|399275_399836_+|TlpA-family-protein-disulfide-reductase
MTSSAKWSIVGVVAILAVIVALIPQLVGGESAEEAQGETSTSKITPRPDCVASGAAGVDLPCLGGANGVGNELATVVNLWAWWCEPCRAELPIFDEFATTHPELNVIGVHADQNAANGAALLEDLGVNLASYQDDSNLFAGALGLPGVVPITIVVSPDGNVVDTFPQPFETIDDLETAVAGALQNA
>NC_021352.1|WP_011896605.1|398485_399268_+|endonuclease-III
MGSITPQKRPRVGSHIANKGQETDIGRKRRARRINRTLTVAYPDAHCELDFTNPLELTVATILSAQCTDVRVNQVTPALFKRYPTAADYANADRTELEEFIRPTGFYRNKATSLIGLGEALISLHDGQVPGTLEQLVELPGVGRKTANVVLGNAFGVPGITVDTHFGRLVRRLKLTDEEDPVKVEKVMNELIEKPEWTMFSHRLIFHGRRICHSRRAACGACMLAADCPSFGLEGPSDPFEAQKLIKSDDREHLLKMAGM
>NC_021352.1|WP_003855811.1|398254_398440_-|hypothetical-protein
MTGLLVVIIPLLLMLFAFAMERIESSFLHSNTPPSTEVKLAKDAIGAENLNDDDVQEASAA
>NC_021352.1|WP_003855810.1|397309_397993_-|Crp/Fnr-family-transcriptional-regulator
MEGVQEILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSAVCVTEVHAATMNSDMLRNWVADHPAIAEQLLRVLARRLRRTNASLADLIFTDVPGRVAKTLLQLANRFGTQEAGALRVNHDLTQEEIAQLVGASRETVNKALATFAHRGWIRLEGKSVLIVDTEHLARRAR
>NC_021352.1|WP_003855808.1|396388_397234_+|MBL-fold-metallo-hydrolase
MTKLERMEHPAYSQLRPVTPSASVVLCPNPGYSSLEGTNSWVIRAPEDPRSIVIDPGPEDEGHLNVLHSKAEEVGLILLTHRHYDHADGAQRFRQLTNAPVRAMDPTYCAGAEEIHDGEIITIDGVTPQIEVVATPGHTRDSVSYFIWSGVPHESTLEGIVSGDTIAGRHTTMISETDGDLGEYLNSLAILEERGKDIPLLPGHGPDGQDVSSFARKYIERRELRLNQIREVWETRGRDVSMKDLIDAIYDDVDPVLRGAAEQSTHVAIRYLQAQEASASN
>NC_021352.1|WP_003855806.1|395818_396292_+|MaoC-family-dehydratase
MTTSTTPNTIISFEDAPTLTGQDLGFSQWRTVTQEMVNTFADATDDQQWIHTDPERAKDGPFGGAIAHGFLTLSMIIPFWGELLDVTGVTTKVNYGLDKVRFTSPVKVGSRIRMGAVVREISEVKGNGLHLVADGTIEIEGQERPAVVATFLTRFYA
>NC_021352.1|WP_003855805.1|394600_395797_+|glutaryl-CoA-dehydrogenase
MRDPIQGAVIPSDLFGFAEVLTEAERAVLLETRRVLEEEVKPYINEAWDKAVFPNAIMQPLQDLQLLDPPALREAGESVRDIFTGFRNFELARCDINVGTYYNASAGLFRTACMVGGSPEQAQRLDAQIKSGEVKGVFALTEPDHGSDIAGGLATTATKDADTGEWIINGEKRWIGGASTADLIATFARDTADNQVKCFLVAPQAEGVSMEIIDRKASLRIMQNAHITYNNVRVSEDARLHNINSFKDVSECLRRMRSDVAWMAVGAQAGAYEAAVKYVRSREQFGRPIAGFQLIQEKLALMLGNLTASLGMMVKLTEQQQAGIFKEENSALAKMFTSLKLRETASWAREICGGNGIILDNDVARFHADAEAVYSYEGTHEINALIVGRAITGVSAFI
>NC_021352.1|WP_003855802.1|393663_394608_+|4-hydroxyphenyl-beta-ketoacyl-CoA-hydrolase
MSNNVVKYECAVDADNIVAVDMHVHLEVDSCGHESMPADIMEASSKYFKAAERTPSADAIADIYREHKMAAVVFTIDARTQMGHLPNSIDDLVASCARNNDVLIPFGSVDPRTGEDALVEARRQVEELGVRGFKFHPSVQGFDPSAPEFYPLWELLESFGLPCVFHTGQNGMGAGLPGGRGIKLRFSNPLLLDDIAADFPNLTIIMAHPSVPWQDEANSIATHKANVFIDLSGWSPKYFPESLVRQSNNVLSKKVLFGTDFPLITPEKWLAAFANLPLKDEVRPGILKDNAVKVLGLAVNTERGSQAEKAVQHA
>NC_021352.1|WP_003855816.1|402426_403422_-|alpha/beta-hydrolase
MAFFSFSTSPLTRLIPGSRSKATGAKRRLNSTIASIERSPGIIALDGPFTHDHVSVRGIRLHLAEAGSPTKPLVLLIHGAFGGWYDYREVIGPLADAGFHVAAIDLRGYGMSDKPPTGYDLRHAAGELSSVIAALGHDDALLVGSDTGASIAWAIASMYPERVRGLISLGAIHPLDMRRAIRRKPHLHVSDLSRLAPFRLPSFLHNLFQFGITRAARREIVNNTSSSYQRSNAFTEAVLLRKKALSIDHTITPIIRTNRYLVGSIPSKTVSAPVWLLRTNSRRWEHLANTARTRTTGPFTTIAIPGGYELPYLENPSEFAATIAEFARTTF
>NC_021352.1|WP_003855817.1|403436_403988_-|phage-holin-family-protein
MSNKDGLFTDGSSTFAPKVDSIPLSDVDTSVSGEASIGTLISNATSQMSSLFRAEVELAKTELAGEAKKAAIGGGAFSVAGVIALYSSFFFFFFVAALLSEWIKPWAAFLIVFLFMLVIAAALALFGWRKVKKMGAPKNTIQSVNQLKNLVPGQASEKLEKANKRGLYTSASFHSPGAITGDH
>NC_021352.1|WP_003855818.1|404152_404995_-|HAD-family-hydrolase
MKHPDPAQKVEGTTATTPTKVAAFFDLDKTIIAMSSTYAYGREFMNSGLISPVEALQLSLAQATYMFAGHTSEQMDNTRDQLTAMIHGWEVQQVRSIAEETMHSVVTPTIYAEARELIEHHQELGHDVIIISASVKELVEPIARELGVHKTVTTVLEAHDGMYTGEVLFYCKGDAKAQSILDLAEANNYDLSLSFAYSDSFTDLPMLEAVGNPAAVNPDRALKKIALEQGWKILSFKNPEPLFQMPSTRDVGIGTGVVAGIAAVAAGSIWWMKRARRGSA
>NC_021352.1|WP_003855821.1|405475_406537_+|hypothetical-protein
MNTTTHQAILIAVEDPVLHPEAMHVAAATGRPVIETTNLMDISRHFHRALAVLIDTSMASQLSPGKRRDRVFLLDSDPGPSDWKTAMKIHAEQAILLPAQAGELLSALGRDDKQLPVASGHVIGVAGVVGGTGASTFAAALAKRRAESATTVLIDADPSSGGIDLLLGIEDVPGARWPDVGLRRGTVQAADVLKALPSTPDEVVVLSTARSNVLDPFALSESDVSAAIDCFLSADRSVDVVVDLPHARVHPDIAVRLSHLVLVIPAEVRAVAAARARYMELQQLHVSITCVLRHRGWSGLDVAEVEEILGADITAEVGSIQRLAKSVEMHGLTGSLPRVLSSACDAVLGEVAA
>NC_021352.1|WP_003855823.1|406533_407667_+|TadA-family-conjugal-transfer-associated-ATPase
MTDIDLVVENVQRIIATKETPPTSAEIASLIREQAGVISNEDIVMVLRRLRSDSVGVGPLESLLALPGVTDVLVNAHDSVWIDRGQGVEKVDMDLGSEEAVRRLATRLALTCGRRLDDAQPFADGRITRDDGSVLRIHAVLAPLAESGTCISVRVLRQARLSLDDLINSGTVPEDIAPALRNIINQRRSFLVVGGTGTGKTTLLSAMLTEVPADQRIICIEDTAELHPGHPSTINLVSRQANVEGAGAVSMADLLKQSLRMRPDRIVVGEIRGAEVVDLLAAMNTGHDGGAGTIHANSISEVPARMEALAATGGLDRMALHSQLAAAVDIVLVMKHTPFGRKLAQLGVLRGNPVTTQVVWDVDHGMHEGSEEAWFMP
>NC_021352.1|WP_003855825.1|407651_408428_+|type-II-secretion-system-F-family-protein
MVYALGLLSVAVLISGSRGPGARTRPPTPGNGVHLFALIALFCLATVLFIVVDAYTMIAGIIIATTLFWYLRQTHAAAQRTKQSLQLASFLRLCAGNLRAGVTMVDAMDYALDNTTPDKFLSPTLQTAARQARSGGSGPRVLIDASLPDLQRLGHLWETSERHGIPLVALIDQMRSRISSKQRHGESTRAALQGPQATAVILTVLPLAGLLMGTAMGANPLGILTGGGIGGLLLVIGVGLDAAGFVVTHKILQSASPS
>NC_021352.1|WP_003855826.1|408424_409000_+|type-II-secretion-system-F-family-protein
MITALVIAAVAMFLGSPNPGVRGGLISPKSGKSLRIRAGPKKLSNADPVDVSADIELFSACLDAGLNTRDAAQVVAHVAAKTHRELWTHVVALLSIGVSAPQAFALMAGVDGLDELANLATVSHRSGSALSDGCRNISTSLLASAGDKRTAAAERAGVFIAMPLALCFLPAFMIVGLAPVVLSLGTQLINF
>NC_021352.1|WP_003855827.1|409023_409224_+|DUF4244-domain-containing-protein
MSNNLELLRLRTRAILAQDDGLTTVEYALGTLAAAALAAVLYMVVNSDAVSSAFESIISDALSARP
>NC_021352.1|WP_003855828.1|409227_409548_+|hypothetical-protein
MKTKQQREPPELCSDDGSVSIEAALALSSLVVVCGLIIAAMATLAAYLAAVDAAGAAARAHAIGESFEPARGHVDMHEAGGMLTATATIPAPIGQVSASAVFPVEN
>NC_021352.1|WP_003855829.1|409570_409870_+|flp-pilus-assembly-TadE/G-like-family-protein
MTIASAGVASILISLLVVLAWQAGNLVAREQAQVAADVSAVAGAYAFARGELPDAACATAKHTAEANNAQLENCATEGEDLTLTVTVRGQEAHAKAGPL

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Crispr_ID: NC_021352_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021352_3

535821-535915

Orphan

Consensus_repeat	Method
AAGTTTTCGGTCACCTAGTTTGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021352_3

>merge|NC_021352|3|535821-535915|CRISPRCasFinder
AAGTTTTCGGTCACCTAGTTTGGTTTTCAACCCGCGATACCAAACTATTTGACCGAAAATTCTCCCGGAAGCAATTTTCGGTCACCTAGTTTGGT

>NC_021352|3|3|535821-535915|CRISPRCasFinder
AAGTTTTCGGTCACCTAGTTTGGT	TTTCAACCCGCGATACCAAACTATTTGACCGAAAATTCTCCCGGAAG
CAATTTTCGGTCACCTAGTTTGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_021352.1\|WP_003855554.1\|532038_533895_+\|dehydroshikimate-dehydratase-QsuB	unknown	unknown	gnl\|CDD\|225726
NC_021352.1\|WP_003855558.1\|536157_537210_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NC_021352.1\|WP_003855552.1\|529439_530324_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_021352.1\|WP_003855562.1\|538864_539944_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270265
NC_021352.1\|WP_003855576.1\|544671_545184_+\|hypothetical-protein	unknown	unknown	unknown
NC_021352.1\|WP_011013635.1\|526020_526269_+\|glutaredoxin-family-protein	unknown	unknown	gnl\|CDD\|368604
NC_021352.1\|WP_003855556.1\|534393_535245_+\|quinate/shikimate-dehydrogenase-(NAD+)	unknown	unknown	gnl\|CDD\|172521
NC_021352.1\|WP_003855555.1\|533941_534379_+\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|237270
NC_021352.1\|WP_003855572.1\|542997_544017_+\|porphobilinogen-synthase	unknown	unknown	gnl\|CDD\|236450
NC_021352.1\|WP_003855574.1\|544046_544631_+\|hypothetical-protein	unknown	unknown	unknown
NC_021352.1\|WP_074469894.1\|537210_538788_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
NC_021352.1\|WP_003855578.1\|545297_547934_+\|cation-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|225127
NC_021352.1\|WP_003855564.1\|539980_540244_+\|hypothetical-protein	unknown	unknown	unknown
NC_021352.1\|WP_003855550.1\|529151_529436_+\|hypothetical-protein	unknown	unknown	unknown
NC_021352.1\|WP_003855553.1\|530599_532003_+\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NC_021352.1\|WP_003855548.1\|527750_528659_+\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NC_021352.1\|WP_003855557.1\|535250_535526_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223300
NC_021352.1\|WP_011013636.1\|526354_527749_+\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592
NC_021352.1\|WP_020309527.1\|542480_542909_+\|DUF3806-domain-containing-protein	unknown	unknown	gnl\|CDD\|372263
NC_021352.1\|WP_003855566.1\|540667_542464_+\|bifunctional-uroporphyrinogen-III-C-methyltransferase/uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|224503

Protein	Function_ID	Function_description	E-value
NC_021352.1\|WP_003855554.1\|532038_533895_+\|dehydroshikimate-dehydratase-QsuB	gnl\|CDD\|225726	COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only].	3.57184e-131
NC_021352.1\|WP_003855558.1\|536157_537210_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	2.74428e-129
NC_021352.1\|WP_003855552.1\|529439_530324_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.36304e-33
NC_021352.1\|WP_003855562.1\|538864_539944_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270265	cd13547, PBP2_Fbp_like_2, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic domain (Fbp) has high affinity for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.81771e-101
NC_021352.1\|WP_011013635.1\|526020_526269_+\|glutaredoxin-family-protein	gnl\|CDD\|368604	pfam05768, DUF836, Glutaredoxin-like domain (DUF836). These proteins are related to the pfam00462 family.	2.25587e-14
NC_021352.1\|WP_003855556.1\|534393_535245_+\|quinate/shikimate-dehydrogenase-(NAD+)	gnl\|CDD\|172521	PRK14027, PRK14027, quinate/shikimate dehydrogenase (NAD+).	0
NC_021352.1\|WP_003855555.1\|533941_534379_+\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|237270	PRK13015, PRK13015, 3-dehydroquinate dehydratase; Reviewed.	1.93025e-83
NC_021352.1\|WP_003855572.1\|542997_544017_+\|porphobilinogen-synthase	gnl\|CDD\|236450	PRK09283, PRK09283, porphobilinogen synthase.	0
NC_021352.1\|WP_074469894.1\|537210_538788_-\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	4.85539e-102
NC_021352.1\|WP_003855578.1\|545297_547934_+\|cation-translocating-P-type-ATPase	gnl\|CDD\|225127	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism].	2.7519e-172
NC_021352.1\|WP_003855553.1\|530599_532003_+\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.69864e-159
NC_021352.1\|WP_003855548.1\|527750_528659_+\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	3.02456e-133
NC_021352.1\|WP_003855557.1\|535250_535526_-\|hypothetical-protein	gnl\|CDD\|223300	COG0222, RplL, Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis].	3.19956e-16
NC_021352.1\|WP_011013636.1\|526354_527749_+\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	1.28431e-157
NC_021352.1\|WP_020309527.1\|542480_542909_+\|DUF3806-domain-containing-protein	gnl\|CDD\|372263	pfam12713, DUF3806, Domain of unknown function (DUF3806). This family represent the C-terminal domain of the structure. In two related Bacteroides species the gene lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1ma7 whose C-terminal domain is a phage integrase, pfam00589.	9.81415e-21
NC_021352.1\|WP_003855566.1\|540667_542464_+\|bifunctional-uroporphyrinogen-III-C-methyltransferase/uroporphyrinogen-III-synthase	gnl\|CDD\|224503	COG1587, HemD, Uroporphyrinogen-III synthase [Coenzyme metabolism].	2.8604e-64

>NC_021352.1|WP_003855557.1|535250_535526_-|hypothetical-protein
MFGRKDINLSALEARVAALERRLAEQDQIIAQLGGDSSTPLSLQRPQSGLHPDVVALLQQGKKIAAIKRHRELTGAGLKEAKETVEASRFY
>NC_021352.1|WP_003855556.1|534393_535245_+|quinate/shikimate-dehydrogenase-(NAD+)
MNDSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDADGHTTGHNTDVSGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIETELLKAARDLGCETLDGTRMAIHQAVDAFRLFTGLEPDVSRMRETFLSL
>NC_021352.1|WP_003855555.1|533941_534379_+|type-II-3-dehydroquinate-dehydratase
MLGKILLLNGPNLNMLGKREPDIYGHDTLEDVVALATAEAAKHGLEVEALQSNHEGELIDALHNARGTHIGCVINPGGLTHTSVALLDAVKASELPTVEVHISNPHAREEFRHHSYISLAAVSVIAGAGIQGYRFAVDILANLQK
>NC_021352.1|WP_003855554.1|532038_533895_+|dehydroshikimate-dehydratase-QsuB
MRTSIATVCLSGTLAEKLRAAADAGFDGVEIFEQDLVVSPHSAEQIRQRAQDLGLTLDLFQPFRDFEGVEEEQFLKNLHRLEEKFKLMNRLGIEMILLCSNVGTATINDDDLFVEQLHRAADLAEKYNVKIAYEALAWGKFVNDFEHAHALVEKVNHKALGTCLDTFHILSRGWETDEVENIPAEKIFFVQLADAPKLSMDILSWSRHHRVFPGEGDFDLVKFMVHLAKTGYDGPISLEIFNDSFRKAEVGRTAIDGLRSLRWLEDQTWHALNAEDRPSALELRALPEVAEPEGVDFIEIATGRLGETIRVLHQLGFRLGGHHCSKQDYQVWTQGDVRIVVCDRGATGAPTTISAMGFDTPDPEAAHARAELLRAQTIDRPHIEGEVDLKGVYAPDGVELFFAGPSPDGMPEWLPEFGVEKQEAGLIEAIDHVNFAQPWQHFDEAVLFYTALMALETVREDEFPSPIGLVRNQVMRSPNDAVRLLLSVAPEDGEQGDFLNAAYPEHIALATADIVAVAERARKRGLDFLPVPENYYDDVQARFDLPQEFLDTLKENHLLYDCDENGEFLHFYTRTLGTLFFEVVERRGGFAGWGETNAPVRLAAQYREVRDLERGIPN
>NC_021352.1|WP_003855553.1|530599_532003_+|MHS-family-MFS-transporter
MSEQLQGVTHSESTQGKTPKRAALSSWIGSALEYYDFAVYGTAAALVLNHLFFPADTSPGIAILAAMGTVGVAYVVRPLGALIMGPLGDRYGRKFVLMLCLFLIGASTFAVGCLPTFDQVGYLAPALLVLCRVIQGLSASGEQSSAISVSLEHADERHRAFTASWTLHGTQFGTLLATGVFIPFTLFLSEDALMSWGWRVPFWLSAAVVLVAFLIRRGLEEPPAFRENKEAVAGAASPLAMTLRYHKAAVARVAIAAMINSVNIVFTVWALSFATNIVGLDRSTVLLVPVVANLVALIAIPLSGMLADRIGRRPVFIMGAIGGGLAMNGYLGAIYSGNWTMIFFMGVLMSGLLYSMGNAVWPAFYAEMFPTSVRVTGLALGTQIGFAVSGGFVPVIASALAGDQGDQWMKVSIFVGVVCVISALVAMTAKETKALTLDEIDALHTARGEAADLAAANKASEAQLAAK
>NC_021352.1|WP_003855552.1|529439_530324_-|LysR-family-transcriptional-regulator
MHLNQLEFFIAVAQHGQINRAAEELLISQPALSRQISALEKSVGAPLFERHSRGVSLTKAGEILHEEALRTLSRMQSVVDEIQSGEHLITSINIGVPPGIPIDWLRCQLIDLGPETRISLIESPTDDQLKLLKQRELDIALCRRQSEAFATTLVHEQELGIVVRKNSELHQKVAGKDNATLFDLEGLRVLAHSRGEVRIQEEILKNAMLAAGVNATWIFRKFGQYSSLIADLVQADVALTTEESARTNFPSWQWVPIEGEDASGNDLVVRTWITWNPQPTPAVKALIQKFIDGN
>NC_021352.1|WP_003855550.1|529151_529436_+|hypothetical-protein
MRIPRKAIRNIQVVDNVISSVDRPIKRTGRLRIPGVFVAGTHAYVNETLSENEFSMCRKNEPGLVIELENISIDRIVISTPDAHRYADELMAAV
>NC_021352.1|WP_003855548.1|527750_528659_+|hydroxymethylbilane-synthase
MTLKIGTRGSKLATTQAGTIRDQLKYFGRDAELHIVTTPGDVNMSPVERIGVGVFTQALRDVLHAGECDVAVHSMKDLPTAADPRFHLVVPTRADSREALIARDGLTLAELPEGAKVGTSAPRRISQLKAIRPDLEILPLRGNIDTRMGKVTSGELDAVMLAYAGLTRVGMQDRATEVFDADIIMPAPAQGALAIECRADDTETVRALNMLMHADTFVSAVAERTVLNRLEAGCTAPVAAHATLDGYSGDTMTLTAGVYALDGSDQLVFSAEGDGARPEELGELVAQQLIDAGAANLLGDRS
>NC_021352.1|WP_011013636.1|526354_527749_+|glutamyl-tRNA-reductase
MVSVLIVGMSHRSAPVSLLERLSMDDSVRGETTQALLGRASLSEALIVSTCNRLEVYTVTSSFHTGVNDVVEVLHEASGVDIETLRGYLYVRYADAAAEHMLVVTSGLDSMVLGEQQIIGQVRTAYQAANEYGSVGPALHSLTQTALHTGKRVHSETAIDDAGASMVSFAVDRALVQMGLDSEAEAPLSGKTALVLGAGAMSSLAATHLGRAGISNLIMANRTLERAERLAEHSLEAGVPAEVVEYDQRASAYNRVDLVVSATGADDFTVKPEDIPEGASLMLVDLSMPRDIDDACADLPGVDLVNIERLHKASREGGSGMAPSEEEALAIVREELDSFTSEQRIRDIVPAVSALRRQAASVGSDELDRLRQRAPGISEVEWGEVEKTVRRVVDKLLHEPTVRVKELAARSGSISYDSALQELFGLESLASTAAPATTSVNASELPDAGIVAFVNAPSATQTRE
>NC_021352.1|WP_011013635.1|526020_526269_+|glutaredoxin-family-protein
MGATMGHSVEIIVRDNCGSCVRVKAQILPIVEAAGIKLTERNVDQDASLKLEFGDRVPVILVDDEEFACWEVDNDELANALL
>NC_021352.1|WP_003855558.1|536157_537210_-|ABC-transporter-ATP-binding-protein
MSSIKLRDLSVSFRDGTFGLQDINLKIEPEEFVVLIGPSGSGKTTMLRTIAGFVEPSSGSVLIGGEDMTHVPPERRRMGMVFQQHAVWPHMSVAKNVGYPLARSGQKGASISKRVERTLALVGLEGFGSRRPASLSGGQRQRVALARAIIADPTVLLLDEALSALDEPLRDALRRELVSLTRREGLTTVHVTHDRAEAISIADRIVVLGNGRIQQVATPTELLSAPATADVARFIVDATVLNGIVRNGRVMCPDLDTSWDLDAVQAIDDIFDGDLVDIAIPPHSVGIGPAHHPDYIFAEITSVLFQVTSYSATAKTQSGHSFRMSITCSVPEIGETIGLSIDNPMVYRAD
>NC_021352.1|WP_074469894.1|537210_538788_-|iron-ABC-transporter-permease
MRLGMWLIVAGLFITPLTLVVGLALGGNQFPALWDSGLGKALWNSAYTTVLSAVGATIIGTIMALTLDRTDVFGRTALRLFLLSPLLIPPFIGAIAWLQLFGKNQGINRFFGTEVWDIYGADGVTFLLIVHSYPTVYIIVSAALRQLPSDLEQAARIAGADTFTVLRTITLPLLKPALLSAFTLTAVANLADFGIPALLGSPARFETLATMIYRFMESGTVSNPLQVVSTIGVVLLFLGIAAVTADYLVSLYAASKLQDAGTPHRFTLNKSRIPVSVITWIIALIITAAPLLGLAYRALLPAPGVPFNLDNITLNNFEAALSNPRVIEGFSNSLMLSLGAALICGVLGWLIGVLITRTQHFANVPLTLTVLLPTALPGMIIGVGWLILGRYTGIYNTPWVILGAYVCAFTALVVQAVRGPLSQAPEAIEEAARISGAGRLRSIMDTTGAMAIPAAFAGAVLVAVTAVRELTVSILLIAPGTTTLGVQVFNLQQAGNYNQASALSLMFAIIGIVALALTVRSQKEF
>NC_021352.1|WP_003855562.1|538864_539944_-|ABC-transporter-substrate-binding-protein
MSSKHPLKRTATTVFALGASAALLVACSEPSEDVSTAETTTASSSANASDAAGEKVTITVYTSEPEEKVDEINKAFMEANPDIEVEVYRAGTGDLTARIEAEKASGSIEADVLWAADAATFETYAAQGDLAELEDVDTSDIIEEALDAENFYVGTRIIPTVIAYNTEVVDQAELPTSWADLTDPKYAGQLVMPDPAVSGAAAFNASVWKNDPALGEVWITALGENQPMIAQSNGPTSQEIAGGGHPVGIVVDYLVRDLAAAGSPIDTIYASEGSPYITEPAGVFADSEKKEAAERYINFLLSVEGQEIAVEQAYLPVREDVGTPEGTPELADIELMTPDLEVVTADKAAAVEFFQNAMN
>NC_021352.1|WP_003855564.1|539980_540244_+|hypothetical-protein
MGEEITSLHEWVHFAGLMEMSAGLAMFQLDLEGETYMKRGISRIQSRRSGVLQATAICSELPNKGVGYVGREKNYLYRRRNIKKCLC
>NC_021352.1|WP_003855566.1|540667_542464_+|bifunctional-uroporphyrinogen-III-C-methyltransferase/uroporphyrinogen-III-synthase
MTIAHKPEMAETTGIETNQVSETIGVESLTHGNLRPVSSFEGQHEGQTEELLPGKVIFVGAGPGNPDLLTVRAREVLGNAVRAITDEQVLSGVRAFVATEIPVPEDKLQAAEDEYERICIEAKENGARRKPPRPAPPTAAEITEVSEATPAQIVELVQNALSYGGDVIRLVTGNPLSSDTTLAEISAVSEAGLEFQVVPGMSLPATVPAFAGIALGSTYTETDVNGQNLDWDQLASAPQPLVLQARVQDLSRIAQELKARNMPLETPVSVTANGTTRLQRTYDTTLGLLHKLDAELNGPLVVTLGKGVDDRSKYSWWENRALYGWRVLVPRAREQAASMSARLSSHGAIPQEVPTISVEPPRNPAQMERAIKGIVEGRYQWVVLTSVNAVKAVWEKITEFGLDSRSFAGVRIAAVGEKTATEIRALGITPELLPARTRQNAQGLVDVFPEYFEELDPVGRVLLPRADIATDVLVDGLTHLGWEVEDVVAYRTVRAAPPSADIRDMIKTGGFDAVAFTSSSTVKNLVGIAGKPHPRTIVACIGPMTAATAEELGLRVDVMPEIAEVPELIDALAEHVADLRAKGELPPPRKKRRRRKAS
>NC_021352.1|WP_020309527.1|542480_542909_+|DUF3806-domain-containing-protein
MLSMDIQQLDAETTAWKDSLLRAAQEAGFHFEPPKLFEDFEAMVEQYKQAAASDPDIDVTDIQQMWGIVVGEYLREKMGMDWVIITDDYGTDLAILATAPNGDHVYSCPIIVVGKRFSTDYEPGQLEFFCNQFIVTSLAQLQ
>NC_021352.1|WP_003855572.1|542997_544017_+|porphobilinogen-synthase
MSTSSDYSHALIRRPRRLRANPAMRELVAETALRPADLILPMFFADGITEAREISSMPGVYQHTEDSLLRAAHEALDAGVRCVDLFGVPMDADKDFNGSQAWSETGVLNRALASLRKEFGDDLLIMADTCLDEFTDHGHCGVVTEDRHGNAIVDNDATLPLYQQMAVAQARAGAHIVSPSGMMDGQIAAIRAALDEEGYQDVAIMAYSAKYASAFFGPFREAVGSSLQGDRRTYQQDPANLRESLLEAELDIAEGADFIMVKPALPYLDVLTRIADTSPVPVAAYQVSGEYAMIQAAGRNGWVDLDAVMMESLTSIKRAGANQILTYFAVDAARALRNA
>NC_021352.1|WP_003855574.1|544046_544631_+|hypothetical-protein
MSMLPNLTPKKSAPPSSSASAKNAGEKKEDTVKLLIQIWAVMIGLELLHQILNVVMSFTDPTALRTVAREQAAAQGLSEGIVNATVIAAILVMGFFNLIVIAILSWMVVMVKNRSKRLPTAFLLLTIFSFFFILRVLMLFFASPGGTDVPMALFAIDGCVQILVGVSAGVAYALSRTEQPVKMLTDYAPEDAKR
>NC_021352.1|WP_003855576.1|544671_545184_+|hypothetical-protein
MPSMFPSPATGGDDINRRPLNEPNADATTIPTALKVVFWMLFATAAFMIFTGLVMYTAGYTGPDDVDESYKAVVVNNQEFIGGINAFAGIVIAALTSQLPKGGKNPRRLLLAIMLLVLLTDLLSFATRAGGFALAIIAVLLALEALLMFRPAVNDHIDRNHMARVMNREK
>NC_021352.1|WP_003855578.1|545297_547934_+|cation-translocating-P-type-ATPase
MSTPDSSSVDKAVNTAISDAKTAALKAGVGLNRATAPEEEEDLSSSIKVSLAFELEGLSNAPSLMAVEKALEKIPGVSADLIYPSQTAWITATDRVHPETLIGVFEQFGIKAQLSNSSLLRRHQQLSAEVNREARIDRYRSRMDAKRISPRVRRHNRQEMVHAVRARESGWIKRMNHTTSQHEDPMSGDVLFTARALITPMRLWVSLPFALIVLALSLNPSWQFDYWQWLSAVLAIPVVVWGAWPFHRAAAGGIRRGISALDATSSIAIAAAYAWSIAMLLFETPGNKSWRSYPSWFAFNHGTLTQNEIYFDVACGITVLLLGGRLLTRRRSQSSLLAELGRLQIDPQRIVTVVRKHRLKRVVQELNIPVQEVRVNDDVKVPPNTTIPVDGTVIGGGSRIAASIIMGQDQRDVKVNDKVFAGSLNLESEIKVRVIRTGHRTRIAAVHRWVKQATLQENRHNRAAIRSAGNLVPITFTLAVVDFCLWALISGNINAAFTTTLAVLACVAPVALALSAPLATRNSIEAAARHGILVRSGEIFRVLDDVDTAVFNRVGTLTDGEMTVETVTADKGEDPELVLRVAGALAMESHHAISKALVKASREARDTGAGGEDVPHWIEVGNVEITEAGSFQATIELPLIKPSGEKIMRTTEALLWRPRSMTEVREHLSPRLVAAATSGGAPLIVRWKGKDRGVITLSDHVRSDSSDAIIAIEEQGIETMMLSRDTYPVARRYADSLGITHVLAGIAPGKKAQVVRAVHTRGSTVAMIGDESVMDCLKVADVGVLMGVDRPSELRDDSDDPAADVVVMREEVMSVPTLFKLARRYAKLVNGNIALAWIYNGVAMVIAASGLLHPMAATVAMLASSLLIEWRSGRARKY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage