CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_021492	Enterobacter sp. R4-368 plasmid pENT01, complete sequence	0 crisprs	NA	0	0	1	0
NC_021500	Enterobacter sp. R4-368, complete sequence	1 crisprs	csa3,DEDDh,DinG,cas3,WYL	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

63 : 54924

Escherichia_phage(27.78%)

transposase,integrase

attL 7232:7253|attR 25828:25849

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110093664.1\|63_1210_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	5.2e-144	90.4
WP_016495505.1\|1308_1935_+	hypothetical protein	NA	NA	NA	NA
WP_016495506.1\|2009_2270_-	hypothetical protein	NA	NA	NA	NA
WP_016495507.1\|2284_2953_-	hypothetical protein	NA	NA	NA	NA
WP_189660128.1\|2955_3927_-	StbA family protein	A0A222YXF2	Escherichia_phage	2.5e-70	46.0
WP_016495509.1\|4188_4533_+	hypothetical protein	NA	NA	NA	NA
WP_016495512.1\|5496_5940_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.3e-30	53.5
WP_044489848.1\|5927_7202_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	8.3e-151	61.8
7232:7253	attL	NA	NA	NA	NA
WP_016495514.1\|7712_8474_+	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	2.2e-127	87.6
WP_016495515.1\|9170_9806_+	AAA family ATPase	A0A222YXS3	Escherichia_phage	4.4e-44	46.2
WP_016495516.1\|9808_10117_+	hypothetical protein	NA	NA	NA	NA
WP_016495517.1\|10178_11519_-	hypothetical protein	NA	NA	NA	NA
WP_016495518.1\|11713_12508_-	hypothetical protein	NA	NA	NA	NA
WP_016495519.1\|12905_13109_+	hypothetical protein	NA	NA	NA	NA
WP_189660126.1\|13402_13654_+	hypothetical protein	NA	NA	NA	NA
WP_016495521.1\|13783_14044_-	hypothetical protein	NA	NA	NA	NA
WP_016495522.1\|14654_15434_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	3.0e-50	89.3
WP_016495523.1\|15430_16153_-	hypothetical protein	NA	NA	NA	NA
WP_016495524.1\|16195_16543_-	hypothetical protein	NA	NA	NA	NA
WP_016495525.1\|17661_18087_+	ester cyclase	NA	NA	NA	NA
WP_044489865.1\|18217_18577_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_016495527.1\|18899_19538_+	NAD(P)H-binding protein	NA	NA	NA	NA
WP_016495528.1\|19813_20719_-	NmrA/HSCARG family protein	NA	NA	NA	NA
WP_016495530.1\|20858_21776_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_016495531.1\|21956_22745_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_016495532.1\|22853_23621_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_016495533.1\|23965_24232_+	hypothetical protein	NA	NA	NA	NA
WP_016495534.1\|24228_24867_+	hypothetical protein	NA	NA	NA	NA
WP_016495535.1\|24863_25649_+	hypothetical protein	NA	NA	NA	NA
WP_044489868.1\|27288_27720_-	hypothetical protein	NA	NA	NA	NA
25828:25849	attR	NA	NA	NA	NA
WP_016495538.1\|27885_28797_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_016495540.1\|29926_32170_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	9.8e-46	27.5
WP_016495541.1\|32180_32543_+	hypothetical protein	NA	NA	NA	NA
WP_016495542.1\|33039_33285_+	hypothetical protein	NA	NA	NA	NA
WP_189660127.1\|33361_33964_+	hypothetical protein	NA	NA	NA	NA
WP_016495544.1\|33960_34419_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_016495545.1\|34690_35059_-	hypothetical protein	NA	NA	NA	NA
WP_071925300.1\|35045_35447_-	BPSL0067 family protein	NA	NA	NA	NA
WP_110093710.1\|35672_36819_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.9e-147	92.6
WP_016495549.1\|36955_37126_+	hypothetical protein	NA	NA	NA	NA
WP_044489850.1\|37378_37954_-	PIN domain-containing protein	K4HZX4	Acidithiobacillus_phage	3.3e-46	52.3
WP_016495551.1\|37922_38414_-	helix-turn-helix domain-containing protein	K4ICM4	Acidithiobacillus_phage	5.3e-29	49.3
WP_001067855.1\|38952_39657_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_016495554.1\|39809_40901_+	hypothetical protein	NA	NA	NA	NA
WP_016495555.1\|40917_42222_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_016495556.1\|42245_42758_+	adenylyl-sulfate kinase	A0A2K9L4R9	Tupanvirus	6.1e-20	37.6
WP_016495557.1\|43202_44045_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.0e-31	34.7
WP_016495558.1\|44034_45567_-\|transposase	IS21-like element ISAav1 family transposase	A0A2L1IVA1	Escherichia_phage	1.3e-17	28.4
WP_016495559.1\|45660_46659_-	hypothetical protein	NA	NA	NA	NA
WP_016495560.1\|46806_47481_+	DNA methylase	A0A0M4S5U3	Salmonella_phage	9.8e-50	46.7
WP_044489851.1\|47482_48088_-	recombinase family protein	NA	NA	NA	NA
WP_003830785.1\|48207_48774_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_003830786.1\|48784_50296_-	MFS transporter	NA	NA	NA	NA
WP_001067848.1\|50710_51415_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_016495564.1\|51939_54924_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	9.6e-307	54.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_021500

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CRISPR-Cas detection and classification

Crispr_ID: NC_021500_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021500_1

1783635-1783750

Orphan

Consensus_repeat	Method
GGCGCTGCAGGTATCCCCTGCGGCGTCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021500_1

>merge|NC_021500|1|1783635-1783750|CRISPRCasFinder
GGCGCTGCAGGTATCCCCTGCGGCGTCCGCACAAACGACGGCTGCAACTGGCAAAAACTAATGAAATCAGTGGTATTACTTCTTCTGGCGCTGCAGGCATCCCCTGCGGCGTCCGC

>NC_021500|1|1|1783635-1783750|CRISPRCasFinder
GGCGCTGCAGGTATCCCCTGCGGCGTCCGC	ACAAACGACGGCTGCAACTGGCAAAAACTAATGAAATCAGTGGTATTACTTCTTCT
GGCGCTGCAGGCATCCCCTGCGGCGTCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_021500.1\|WP_189660098.1\|1789276_1789558_+\|hypothetical-protein	unknown	unknown	unknown
NC_021500.1\|WP_020454846.1\|1784602_1784941_-\|flagellar-protein-FliT	unknown	unknown	gnl\|CDD\|377507
NC_021500.1\|WP_020454850.1\|1788868_1789252_+\|DUF2829-domain-containing-protein	unknown	unknown	gnl\|CDD\|378590
NC_021500.1\|WP_071925218.1\|1777345_1778182_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|236725
NC_021500.1\|WP_020454840.1\|1779668_1780328_+\|protein-phosphatase-CheZ	unknown	unknown	gnl\|CDD\|236868
NC_021500.1\|WP_020454851.1\|1789685_1790195_-\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|182587
NC_021500.1\|WP_020454835.1\|1774868_1776566_-\|flagellar-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|235668
NC_021500.1\|WP_044489458.1\|1773185_1773899_-\|flagellar-assembly-protein-FliH	unknown	unknown	gnl\|CDD\|235562
NC_021500.1\|WP_020454834.1\|1773885_1774872_-\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|235561
NC_021500.1\|WP_020454853.1\|1792233_1793193_-\|flagellar-motor-protein-MotB	unknown	unknown	gnl\|CDD\|236365
NC_021500.1\|WP_020454839.1\|1779275_1779665_+\|chemotaxis-response-regulator-CheY	unknown	unknown	gnl\|CDD\|170568
NC_021500.1\|WP_020454842.1\|1781506_1783609_+\|flagellar-biosynthesis-protein-FlhA	unknown	unknown	gnl\|CDD\|235672
NC_021500.1\|WP_020454849.1\|1787403_1788657_+\|FliC/FljB-family-flagellin	unknown	unknown	gnl\|CDD\|235867
NC_021500.1\|WP_020454836.1\|1776807_1777143_+\|flagellar-hook-basal-body-complex-protein-FliE	unknown	unknown	gnl\|CDD\|178948
NC_021500.1\|WP_110093609.1\|1787137_1787227_-\|BC10-family-protein	unknown	unknown	unknown
NC_021500.1\|WP_044489461.1\|1778187_1779234_+\|chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|234828
NC_021500.1\|WP_020454847.1\|1784933_1785341_-\|flagellar-export-chaperone-FliS	unknown	unknown	gnl\|CDD\|235560
NC_021500.1\|WP_020454852.1\|1790232_1792233_-\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|236712
NC_021500.1\|WP_020454848.1\|1785387_1786866_-\|flagellar-filament-capping-protein-FliD	unknown	unknown	gnl\|CDD\|236141
NC_021500.1\|WP_020454841.1\|1780361_1781507_+\|flagellar-type-III-secretion-system-protein-FlhB	unknown	unknown	gnl\|CDD\|235569

Protein	Function_ID	Function_description	E-value
NC_021500.1\|WP_020454846.1\|1784602_1784941_-\|flagellar-protein-FliT	gnl\|CDD\|377507	pfam05400, FliT, Flagellar protein FliT. This family contains several bacterial flagellar FliT proteins. The flagellar proteins FlgN and FliT have been proposed to act as substrate specific export chaperones, facilitating incorporation of the enterobacterial hook-associated axial proteins (HAPs) FlgK/FlgL and FliD into the growing flagellum. In Salmonella typhimurium flgN and fliT mutants, the export of target HAPs is reduced, concomitant with loss of unincorporated flagellin into the surrounding medium.	1.23444e-05
NC_021500.1\|WP_020454850.1\|1788868_1789252_+\|DUF2829-domain-containing-protein	gnl\|CDD\|378590	pfam11195, DUF2829, Protein of unknown function (DUF2829). This is a uncharacterized family of proteins found in bacteria and bacteriphages.	1.3579e-07
NC_021500.1\|WP_071925218.1\|1777345_1778182_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|236725	PRK10611, PRK10611, protein-glutamate O-methyltransferase CheR.	6.6351e-143
NC_021500.1\|WP_020454840.1\|1779668_1780328_+\|protein-phosphatase-CheZ	gnl\|CDD\|236868	PRK11166, PRK11166, chemotaxis regulator CheZ; Provisional.	2.62033e-98
NC_021500.1\|WP_020454851.1\|1789685_1790195_-\|chemotaxis-protein-CheW	gnl\|CDD\|182587	PRK10612, PRK10612, chemotaxis protein CheW.	2.00905e-83
NC_021500.1\|WP_020454835.1\|1774868_1776566_-\|flagellar-M-ring-protein-FliF	gnl\|CDD\|235668	PRK06007, fliF, flagellar basal body M-ring protein FliF.	0
NC_021500.1\|WP_044489458.1\|1773185_1773899_-\|flagellar-assembly-protein-FliH	gnl\|CDD\|235562	PRK05687, fliH, flagellar assembly protein FliH.	1.65954e-47
NC_021500.1\|WP_020454834.1\|1773885_1774872_-\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|235561	PRK05686, fliG, flagellar motor switch protein G; Validated.	2.44993e-142
NC_021500.1\|WP_020454853.1\|1792233_1793193_-\|flagellar-motor-protein-MotB	gnl\|CDD\|236365	PRK09041, motB, motility protein MotB.	9.60804e-136
NC_021500.1\|WP_020454839.1\|1779275_1779665_+\|chemotaxis-response-regulator-CheY	gnl\|CDD\|170568	PRK10610, PRK10610, chemotaxis protein CheY.	2.39412e-76
NC_021500.1\|WP_020454842.1\|1781506_1783609_+\|flagellar-biosynthesis-protein-FlhA	gnl\|CDD\|235672	PRK06012, flhA, flagellar type III secretion system protein FlhA.	0
NC_021500.1\|WP_020454849.1\|1787403_1788657_+\|FliC/FljB-family-flagellin	gnl\|CDD\|235867	PRK06819, PRK06819, FliC/FljB family flagellin.	2.74797e-142
NC_021500.1\|WP_020454836.1\|1776807_1777143_+\|flagellar-hook-basal-body-complex-protein-FliE	gnl\|CDD\|178948	PRK00253, fliE, flagellar hook-basal body protein FliE; Reviewed.	1.2773e-24
NC_021500.1\|WP_044489461.1\|1778187_1779234_+\|chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	0
NC_021500.1\|WP_020454847.1\|1784933_1785341_-\|flagellar-export-chaperone-FliS	gnl\|CDD\|235560	PRK05685, fliS, flagellar export chaperone FliS.	1.2816e-42
NC_021500.1\|WP_020454852.1\|1790232_1792233_-\|chemotaxis-protein-CheA	gnl\|CDD\|236712	PRK10547, PRK10547, chemotaxis protein CheA; Provisional.	0
NC_021500.1\|WP_020454848.1\|1785387_1786866_-\|flagellar-filament-capping-protein-FliD	gnl\|CDD\|236141	PRK08032, fliD, flagellar capping protein; Reviewed.	2.65956e-93
NC_021500.1\|WP_020454841.1\|1780361_1781507_+\|flagellar-type-III-secretion-system-protein-FlhB	gnl\|CDD\|235569	PRK05702, flhB, flagellar type III secretion system protein FlhB.	5.13695e-178

>NC_021500.1|WP_020454842.1|1781506_1783609_+|flagellar-biosynthesis-protein-FlhA
MANIASKLRLPAFKETQWQIMAGPVLIMLILAMMVLPLPAFLLDTLFTFNIVLSLMILMVAMFTQKTLEFSAFPTVLLFSTLLRLALNIASTRIILMEGHTGAAAAGRVVEAFGHFLVGGNFAIGIVVFAILIIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEAEAKRRRSEVTQESDFYGSMDGASKFVRGDAIAGLLIMAINVVGGLIIGVMQHGLSVAEAGETYTLLTIGDGLVAQIPALIISTAAGVIVTRVSNDEDIGEQMVGQLFNNPRVMLLSGGVIGLLGLIPGMPNLVFLMFTAILLGLAWWLRGREMKNPGRRSAVTEDKDSASALAANEQASAEASWADVEMEDVLGLEVGYRLIPLVDSDQDGQLLVRVRGIRKKFAQEMGFLPPAIHIRDNLDLAPGDYRILLKGVEIGSGTMEPERWMAINPGYAEGELPGTPCVDPAFGLPACWIDEVLREQAQIQGFTVVDPSSVIATHLNHLITLYTDELFSRQETQQLLDRITKEMPKLVEDLIPGVISVTLFHKVLQNLLSERVSIRDMRTIIDTLAEYAPVQNDPDELTSQVRIRLGRAITAQWFRNDDDIKVIGLDTSLEKLLIQSLQSGSAIEPGIAENLMRQADRAITEQQSLGVSPVLLVNPALRTMVSRFLRRAFPQLAVLSTLEISNNKTVQMTAVIGTH
>NC_021500.1|WP_020454841.1|1780361_1781507_+|flagellar-type-III-secretion-system-protein-FlhB
MSEESDVEKTEEPTPQRKQKAREEGQIPRSKELSSLLMLLAGWAFMLSGGSQFARQLLELLRTGLALNRLSVMDEQSMFHQTRYLLEMMSNALLPILLGLFVTGIVSPMLLGGVNLSGKSLKLDLKRISPLSGFKRLFSAQVLSEMLKGCLKVVLVACAFALYIYKNKAHFIQLVNEALPMAIAHAMSMTLDCLMMVIFFLLPVVGYDVFYQITSNLKKLRMSRQEIRDEFKQSEGDPHIKSRIKQMQRAAAQNRMMSDIPQADVIVNNPTHYSVALSYKEGGMSAPVVLAKGAGDIALKIRELGAQHRIPMLEAPPLARALYRHCEIGEQIPGELYSAVAEVLAWVYGLRRWRNNGGVPPKQPRDLAVPESMDFVHESSN
>NC_021500.1|WP_020454840.1|1779668_1780328_+|protein-phosphatase-CheZ
MSGLENTQPEDDFKSIFSRVGQLTRLLRDSLVDLGLDRTIVEAAEAIPDTRERLNYVVAKTAQAAERVLTCVEEARPQQEAISAQAEDLSARWDAWFADPVELPVAKELVTDTRQFLVQAPMMSRQTNEHLMEIMMAQDFQDLTGQVIRRMMLLIEMVEKELIQVLLAYVPESLQQEKEAEAEAKTAAMLVNGPQIDSSKAGVMASQDQVDDLLDSLGF
>NC_021500.1|WP_020454839.1|1779275_1779665_+|chemotaxis-response-regulator-CheY
MADKNLRFLVVDDFATMRRIVRNLLKDLGFNRVEEAEDGLDALNKLRADAFDFVISDWNMPNMDGLQLLTEIRADANLNKMPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKIGW
>NC_021500.1|WP_044489461.1|1778187_1779234_+|chemotaxis-response-regulator-protein-glutamate-methylesterase
MRKIKVLCIDDSSLIRKIMTHIVNEQPDMEMVATALDPIVARDLIKQHNPDVLTLDVEMPRMDGLEFLERLMRLRPMPVVMLSSLTSKGSDITLSALELGAVDFITKPQMGLKEGMAQYSDMIADKIRMAAKARIRRSETKVAPPRVMRAPLVGSEKIIAIGSSTGGTEALRHLLQPLPATSPAIVIAQHMPPGFTRSFANRLDHLCQMSVKEAEHGERVLPGHVYIAPGAFHMELTRSGANYHVALSDDLPVNRHRPSVDALFHSVARSAGKNAIGVILTGMGSDGAAGLLAMRQAGAWTIAQSERTCVVFGMPREAIAHNAACETVDLEQIGQHILQRSAGQARRI
>NC_021500.1|WP_071925218.1|1777345_1778182_+|methyltransferase-domain-containing-protein
MRSMTPHAPQAPIVLTESEIEKISKLIYQRAGIVLTAQKRDMVYNRLSRRLRELNLKSFEDYTDRLVANPGSDEWQVFVNALTTNLTSFFREAYHFPTLARHAQSRNGSYNVWCAAASTGEEPWSIAMTLEETLGRSITGPRVLATDIDTDVLEKASLGVYRLSDIDNLTEQQKRTWFLRGTGEHQNRVKIKSELRSTVQFRQLNLIDAQWDIPAPFDAIFCRNVMIYFDQNTQEKLLQRFAKILKPGGLLFVGHSEHFQNLTSPFRLLGQSVYRLGD
>NC_021500.1|WP_020454836.1|1776807_1777143_+|flagellar-hook-basal-body-complex-protein-FliE
MSMNAIGGVLDQIQSQARKVSDASALNPFTSNRNVENKSQFSDILFNSINNISQMQTTAKTQSQAYLAGVEGIGLNDVMVSMQKSSLALNLGIQVRNKLVNAYQDIMNMPV
>NC_021500.1|WP_020454835.1|1774868_1776566_-|flagellar-M-ring-protein-FliF
MTATTQSSNKKGIVDIKALLDNIRLNPRMIFFIAAAAAISIVIALLFWAKEPDYRVLYSNISEQDGGAIVTQLKQMQIPYRFAEIDGSIQIPAEQVYEVRLKLAQQGLPKGGAVGFELLDQEKFGISQFNEQVNFQRALEGELSRTIETLGPVSAARVHLAMPKPSLFLQDQKQPSASVTLTLISGRTLDAGQVSAISYMISSAVPGLSADRVTIVDQSGHLMTQSGEQATQTTQLKYTRKIEAEYQNRIQAILAPIVGAQNVRTQVTAQVDFTQHEQTAEQYQPNSRPEDMAIRSRQSSNAEQGGKSAVGGVPGALSNQPPAPVSAPIEQPAAQQTNGQGATNANANANATATPATPATPYNKQSDETTNYEVDKTLTHIKRSTGTVERLSVAVVVNYVAGADGKTAALSKDKLDQINALVKEVMGYSDKRGDTLNVVNTPFSTEADEPPVPLWKQPEVIKLMMSGARYLFVVLIAWILWRKAVQPFWTRHQEMLLQRMEMEKEARQAELEEQIRKRQSAEMAKAQQRVEAEQGAQQLREMADQEPQVIALVLRQWLNKEQKSS
>NC_021500.1|WP_020454834.1|1773885_1774872_-|flagellar-motor-switch-protein-FliG
MNAAQKSAIVMLTLGDERAAEVFKHLNTHEVTLISSAMVHIGSYTHDQLGTVMKEFRRDSGEFAVLDVNTNEYLRSALVKALGEERANSLLEDLLDANDERNGIETLNFMEPQMVFDLIRDEHPQIIATILVHLKRSQAADLLAKFDERERNDIMLRIATFGGVQPVALQELTEVLNNLLHGQNIKRNKMGGVRPAAEILNMMKSHQEDAAIEAVREYDQELAQKIIDEMFLFENLVEMEDRSIQRILQEVDNESLLVALKGVDDALRDKFFRNMSKRQADIMRDDLNSRGPVRMSQVENEQKAILLIVRRLAETGEIVLGGGDDVYV
>NC_021500.1|WP_044489458.1|1773185_1773899_-|flagellar-assembly-protein-FliH
MSTSKHQWKSWQPENLLQESFGQESELREAVPAGDPATEAAMQVELSRLRKQAEQKGFAQGQAQGLEAGKKQGYEEGFAQGREEGAAQGAAEYRQQQQKQTDEFAQLFDNVRITLDSLDSVMPARLVQVALMAARSLLGESVVSTSTNAWLMTRIQQLLHEDTLQQGNVQLWVSAEESAAVQEMLGSVLEARGWELRTDAQMLPGGCRLTTDGGELDATTETRWNELCNLSREGFAL
>NC_021500.1|WP_020454846.1|1784602_1784941_-|flagellar-protein-FliT
MAESILQYYHELFEMNVAMLEMTKQARWDDFVEVASDYVIKKQDILNHSTDALSMMVKDELKILLKELLANEAEITRNLQARLNTLKQNLSSIHRGARCSQLYSQHQAPSLH
>NC_021500.1|WP_020454847.1|1784933_1785341_-|flagellar-export-chaperone-FliS
MYASQGTNAYAQVSLQSKLAGATPHQLISMLFDGAHSAILQASIYFEKGNVAQRGKMISKAINIIDNGLRAALDHEKGQHIAADLEQMYEYMSRTLLEANLRNEPEPLKHVDSLLMKLAATWKEIEPVQKRVRYG
>NC_021500.1|WP_020454848.1|1785387_1786866_-|flagellar-filament-capping-protein-FliD
MAISSLGVGTGGIDTASMLDQLKAGEQTRLTPYTNLKKKYDSQISAWGQISSLLSNLQKSVTTMGGDAFSKMTVSANEAFSAVAGTGAQADSHSVTISQLATAHKLKTQPQTDADTALGAKTSGGTRTITITQNNGKTMDVELADDETSLNQIAKAINKEKGDVSASVQRTDDGYQLVLSSKTTGSDGQMSVKVTGDASLAGVLDTSNGGQHIDDQGQVVNDPGQTDNMVSVSDAKDAKLRVDGSDYTRSTNNITDIIDGVTLNLKKVSENGESEQLTLTSDTSAIKTSLQDFVKQYNALLDKTSAASKYVAADTSGLGDEDVATQSSKSGALMGDSTLRGLVSEVRSAVNGVYGDADATYASLADLGISIDAQTGQMTLNEDTLDEAIADNPEQIANMFSGRGANEGLATSLGSILKEYLGDSKTKTDGIIDTATESLETQSKIAQTQIDKTQKLIDAQVERYRVEFQNLDTVMSNMNNMSSQLSSLLATL
>NC_021500.1|WP_110093609.1|1787137_1787227_-|BC10-family-protein
MRLCRLCFKLPAKPRVFCLITFLDFFFEF
>NC_021500.1|WP_020454849.1|1787403_1788657_+|FliC/FljB-family-flagellin
MSQVINTNALSLVAQNNLNKSQGSLGTAIERLSSGLRINSAKDDAAGQAISNRFTANINGLSQSSRNANDGISLAQTTEGALNEINDNLQNIRRLSVQAQNGTNSDSDRQSIQDEIDARLSEINRISEQTEFNGVKVLSKDQSLSIQVGSNDGQTIDIELSKMDASTLGMDGFSISNGVNKADLTAAAGTVKVDSGLDYDKTKFTDASTGTKATTVDDIVEGDDGKTYAKVGSDLFEVTATDATTGAITFNSSTAATGVNEVGSLNGENIMKDQAVNMGSITGTLMDDGKGNYYIEDANGELTKAEIDTTTWDVTDTGKAVSTKPSTTDPLTKIDEALAQVDELRSGLGAVQNRFASVISNLNNTVNNLSQSRSRILDADFASEVSEMSRANILQSAGTSVLAQANQVPQNVLSLLR
>NC_021500.1|WP_020454850.1|1788868_1789252_+|DUF2829-domain-containing-protein
MADLTAPEGSFARAILQLQACNRVNRGVWHDAGMYLVRNPGLTEQVVVENDWRAAAGIAAGTAFSYLPNIELCNAQQDFVPWVATQEDREATDWSGVDEHGDNGKVIVDLEVIVLTGGEGETYAAKS
>NC_021500.1|WP_189660098.1|1789276_1789558_+|hypothetical-protein
MIANVVNFRTGYLPELTPAKCHFAIFFTTNTLENDEPLTADNIAGIHVLPGDTAYYLSHGFRVEAFAATNEHLVLFTLTTLKPAMMPTTCTSI
>NC_021500.1|WP_020454851.1|1789685_1790195_-|chemotaxis-protein-CheW
MNLSNTDKQLTGDNTGNEFLVFRLGNEEYGIEILKVQEIRGYDRVTRIANTPAFIAGVTNLRGVIVPIVDLRVKFELASAEFDDNTVVIVLSLDSGRVVGIVVDGVSDVLALNAEQIKPAPEYTVTLSTQYLLGLGSLDERMLILVDIEKLLNSEEMELIERATETSFS
>NC_021500.1|WP_020454852.1|1790232_1792233_-|chemotaxis-protein-CheA
MDISDFYQAFFDEADELMADMEKYLLELDLDSPDREVLNAIFRAAHSIKGGAGTFGFTVLQQTMHILENLLDDVRSGTLTITGPIRDLFLESKDIMQDQLDAYKASAEPDEETFHYICEALRQIALDGTAPAAVSTDVATPVAAETVVAQAAATPDEDGQRLRIVLSKIKEDDRQPLIDEMGNLGRVSQLQAENESLQLTLHTTASPDDILAVLCFVLEPEQISIEPAPAADEPVATTNEPAPPTPAPVNAVAAPAAPAARATRPENNRQRPQATEASSIRVAVEKVDQIINQVGELIITQAMLSQLSGVLDSTNHDTLISTIAQLERNARDLQESVMSIRMMPMEYVFSRFPRLVHDLAGKLNKEVELTLVGGSAELDKRLIEQIVDPLTHLVRNSLDHGIEPVDVRRANGKADKGNLILSAEHHGGNIIIEVTDDGAGLNREKILARAQAQGMTISDNMSDEDVWMLIFAPGFSTAEKVTDVSGRGVGMDVVRRNIQEMGGHVTVHSEQGRGSKIRIILPLTLAILDGMSVRVGPEIYVLPLGSMMESLMLSENTLHRMTGGERMLQVREEYLPLVELGTLFGIHDENYDISEGIAVIVQSAGSRYALLVDQLVGQHQVVVKNLEQNYRKIPGISAATILGDGSVALILDVAVLTTLAKSARAN
>NC_021500.1|WP_020454853.1|1792233_1793193_-|flagellar-motor-protein-MotB
MSKKSATTIVVRRSINKKHGSHGGSWKIAYADFMTAMMAFFLVMWLLSSSSPEQRQQIAEYFKMPIKTTLAQGDKASLSDSVIPGGGDDPIKQDGEVLKQTLQKLDAKKSEVNLKRAREKLESLIQIDPRLNNFTSNLRLSLTDDGLLIQITDSADRPMFQIGRPTPESYMVNILQALVPVLNDMTNRIIVTGHTDSLPYANGEQGYSNWELSSDRANAARRILAGAGLASNKFIRVVGTADTMMQAGSDAADPINRRISILVLSQQKEKQIMQEDVLLRDTLVSSPARQSTSATDAPVQSSGAVAVEPTVKSGPEEIK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1116548 : 1122897

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020454293.1\|1116548_1117091_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	2.0e-53	56.8
WP_020454294.1\|1117094_1117970_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.6e-106	64.5
WP_020454295.1\|1118018_1118918_-	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	4.1e-27	34.2
WP_020454296.1\|1118914_1120003_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.0e-100	53.9
WP_020454297.1\|1120410_1121304_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	2.8e-44	40.3
WP_020454298.1\|1121481_1122897_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.8e-19	32.2

DBSCAN-SWA_2

1202015 : 1210384

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044489687.1\|1202015_1204049_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	8.9e-54	27.8
WP_020454356.1\|1204135_1204591_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	5.4e-28	43.0
WP_020454357.1\|1204675_1205161_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.1e-63	78.7
WP_017459820.1\|1205214_1205934_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_020454358.1\|1205927_1207616_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.2e-258	84.5
WP_020454360.1\|1207835_1208567_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.6e-85	75.4
WP_020454361.1\|1208627_1208741_+	protein YohO	NA	NA	NA	NA
WP_020454362.1\|1208715_1209453_-	ABC transporter permease	NA	NA	NA	NA
WP_020454363.1\|1209436_1210384_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	8.1e-10	29.2

DBSCAN-SWA_3

1275797 : 1324586

Salmonella_phage(26.67%)

head,terminase,holin,capsid,tail,integrase

attL 1275483:1275533|attR 1326189:1326239

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1275483:1275533	attL	NA	NA	NA	NA
WP_020454419.1\|1275797_1276469_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.1e-77	60.3
WP_020454420.1\|1276950_1277931_+	Abi family protein	NA	NA	NA	NA
WP_020454421.1\|1278174_1279440_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	3.6e-223	89.3
WP_044489689.1\|1279442_1279865_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	7.2e-35	56.7
WP_020454423.1\|1280000_1280429_-\|tail	tail fiber assembly protein	U5P083	Shigella_phage	1.3e-15	36.0
WP_071925206.1\|1281590_1282217_-	hypothetical protein	A0A1X7QGJ8	Escherichia_phage	7.3e-15	34.3
WP_020454425.1\|1282738_1285918_-	host specificity protein J	O64335	Escherichia_phage	0.0e+00	81.3
WP_020454426.1\|1285969_1286569_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	3.4e-78	75.4
WP_020454427.1\|1286628_1287051_-	hypothetical protein	G8C7Q7	Escherichia_phage	1.8e-09	33.7
WP_020454428.1\|1287053_1287935_-	hypothetical protein	NA	NA	NA	NA
WP_189660096.1\|1287927_1288488_-	hypothetical protein	NA	NA	NA	NA
WP_020454430.1\|1288832_1289540_-	C40 family peptidase	K7PGV2	Enterobacterial_phage	2.4e-115	79.0
WP_020454431.1\|1289541_1290297_-\|tail	phage minor tail protein L	K7PKU0	Enterobacteria_phage	4.6e-125	84.9
WP_020454432.1\|1290293_1290632_-\|tail	phage tail protein	K7PKL8	Enterobacterial_phage	1.5e-46	74.1
WP_020454433.1\|1290631_1293922_-\|tail	phage tail tape measure protein	A0A220NRN7	Escherichia_phage	0.0e+00	72.7
WP_020454434.1\|1293957_1294221_-	DUF4035 domain-containing protein	K7P7L5	Enterobacteria_phage	2.6e-30	72.4
WP_020454435.1\|1294244_1294631_-\|tail	phage tail protein	K7PGV0	Enterobacterial_phage	1.9e-34	61.3
WP_020454436.1\|1294678_1295152_-	hypothetical protein	A0A220NRQ0	Escherichia_phage	2.3e-69	85.7
WP_020454437.1\|1295211_1295559_-	DUF3168 domain-containing protein	Q9MCS8	Enterobacteria_phage	1.5e-25	48.7
WP_020454438.1\|1295555_1296002_-	HK97 gp10 family phage protein	Q9MCS9	Enterobacteria_phage	6.2e-53	71.8
WP_020454439.1\|1295998_1296337_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.8e-28	54.1
WP_020454440.1\|1296348_1296675_-\|head,tail	phage gp6-like head-tail connector protein	S4TSQ3	Salmonella_phage	3.4e-24	55.6
WP_020454443.1\|1299048_1299216_-	hypothetical protein	S4TR49	Salmonella_phage	3.2e-10	83.8
WP_020454444.1\|1299254_1301192_-\|capsid	phage major capsid protein	S4TNE3	Salmonella_phage	0.0e+00	90.4
WP_020454445.1\|1301250_1302909_-\|terminase	terminase large subunit	Q3HQS7	Burkholderia_phage	3.1e-238	71.3
WP_020454446.1\|1302912_1303413_-\|terminase	terminase small subunit	S4TNN3	Salmonella_phage	3.0e-56	73.2
WP_020454447.1\|1303516_1303885_-	HNH endonuclease	S4TTG9	Salmonella_phage	3.3e-52	82.0
WP_020454448.1\|1303877_1304471_-	hypothetical protein	S4TR53	Salmonella_phage	1.2e-83	71.9
WP_020454449.1\|1304452_1305913_-	hypothetical protein	S4TSQ9	Salmonella_phage	1.6e-227	75.3
WP_020454450.1\|1306000_1306450_+	hypothetical protein	NA	NA	NA	NA
WP_020454451.1\|1306909_1307314_-	DUF2513 domain-containing protein	NA	NA	NA	NA
WP_044489425.1\|1307400_1307745_-	hypothetical protein	NA	NA	NA	NA
WP_020454453.1\|1308119_1308653_-	hypothetical protein	K7PHH7	Enterobacteria_phage	1.7e-52	70.7
WP_110093598.1\|1308652_1309102_-	lysozyme	A0A0M4R365	Salmonella_phage	4.5e-59	79.1
WP_020454455.1\|1309098_1309383_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	4.6e-17	50.0
WP_020454456.1\|1309369_1309750_-\|holin	phage holin family protein	F1C592	Cronobacter_phage	1.9e-50	80.2
WP_020454457.1\|1309849_1310917_-	site-specific DNA-methyltransferase	Q8SBE2	Shigella_phage	6.9e-175	81.6
WP_020454458.1\|1311210_1312542_+	hypothetical protein	R9TRQ8	Vibrio_phage	6.5e-21	27.1
WP_020454459.1\|1312581_1312947_-	antitermination protein	U5P0A5	Shigella_phage	3.7e-43	67.5
WP_020454460.1\|1312961_1313954_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	9.1e-137	68.5
WP_020454461.1\|1313950_1314673_-	phage regulatory protein/antirepressor Ant	G0ZND1	Cronobacter_phage	2.4e-62	59.2
WP_020454462.1\|1314684_1315074_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	1.2e-57	82.2
WP_189660114.1\|1315070_1315391_-	LexA family transcriptional regulator	K7PHB4	Enterobacterial_phage	8.8e-17	48.1
WP_020454464.1\|1315418_1317734_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1B0V7P0	Salmonella_phage	5.7e-198	46.0
WP_020454465.1\|1317730_1318612_-	conserved phage C-terminal domain-containing protein	K7PLZ7	Enterobacterial_phage	1.6e-44	61.1
WP_071925208.1\|1318601_1318781_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	5.6e-13	71.2
WP_020454467.1\|1318944_1319496_-	hypothetical protein	A0A1C9II13	Salmonella_phage	3.5e-53	58.7
WP_020454468.1\|1319518_1319722_-	Cro/Cl family transcriptional regulator	H9C161	Pectobacterium_phage	8.0e-16	64.4
WP_020454469.1\|1319813_1320473_+	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	6.6e-75	64.5
WP_189660097.1\|1320750_1321035_-	hypothetical protein	NA	NA	NA	NA
WP_020454472.1\|1322119_1322872_+	hypothetical protein	M1FN76	Enterobacteria_phage	2.0e-128	84.4
WP_020454473.1\|1322884_1323154_+	hypothetical protein	NA	NA	NA	NA
WP_020454474.1\|1323184_1323394_+	hypothetical protein	NA	NA	NA	NA
WP_020454475.1\|1323395_1324586_+\|integrase	phage integrase Arm DNA-binding domain-containing protein	A0A2H4J1K3	uncultured_Caudovirales_phage	7.8e-26	28.7
1326189:1326239	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1667800 : 1748549

Escherichia_phage(23.68%)

lysis,integrase,tRNA,tail,plate

attL 1723847:1723862|attR 1752523:1752538

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174240595.1\|1667800_1668325_-\|tRNA	tRNA adenosine(34) deaminase TadA	S4VYT2	Pandoravirus	2.6e-05	40.8
WP_020454742.1\|1668370_1669006_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_044489703.1\|1669199_1670444_+	MFS transporter	NA	NA	NA	NA
WP_020454744.1\|1670574_1671423_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_110093605.1\|1671458_1672757_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_017459033.1\|1673105_1673366_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	3.8e-18	53.5
WP_017459034.1\|1673362_1673743_-	holo-ACP synthase	NA	NA	NA	NA
WP_017459035.1\|1673742_1674474_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_017459036.1\|1674540_1675248_-	DNA repair protein RecO	NA	NA	NA	NA
WP_020454746.1\|1675382_1676288_-	GTPase Era	NA	NA	NA	NA
WP_044489704.1\|1676284_1676965_-	ribonuclease III	E5EQH1	Micromonas_sp._RCC1109_virus	4.8e-20	33.0
WP_020454748.1\|1677175_1678150_-	signal peptidase I	NA	NA	NA	NA
WP_020454749.1\|1678165_1679965_-	elongation factor 4	E4ZFJ7	Streptococcus_phage	1.4e-23	25.9
WP_020454750.1\|1680121_1680601_-	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_020454751.1\|1680597_1681551_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_020454752.1\|1681550_1682201_-	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_000003307.1\|1682232_1682808_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_020454753.1\|1683230_1684850_+	L-aspartate oxidase	NA	NA	NA	NA
WP_020454754.1\|1684834_1685572_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_020454755.1\|1685701_1687036_+	ATP-dependent RNA helicase SrmB	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.7e-42	30.4
WP_020454756.1\|1687079_1687463_-	autonomous glycyl radical cofactor GrcA	A0A193GZ98	Escherichia_phage	3.1e-32	80.5
WP_020454757.1\|1687777_1688467_+	uracil-DNA glycosylase	A0A0A8IL23	Epstein-Barr_virus	1.5e-53	49.6
WP_020454758.1\|1688677_1689796_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_020454759.1\|1690000_1690420_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	6.3e-15	38.5
WP_020454760.1\|1690489_1691188_+	DTW domain-containing protein	NA	NA	NA	NA
WP_020454761.1\|1691220_1693875_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_020454762.1\|1693994_1695350_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_020454763.1\|1695395_1695716_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_020454764.1\|1695719_1697018_-	MFS transporter	Q6JIH2	Burkholderia_virus	4.1e-44	31.3
WP_020454765.1\|1702874_1705448_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	5.5e-125	34.9
WP_020454766.1\|1705577_1706309_-	polyphenol oxidase	NA	NA	NA	NA
WP_017459962.1\|1706305_1707286_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_020454767.1\|1707417_1708155_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_044489450.1\|1708430_1708769_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_189660115.1\|1708871_1708922_+	pheA operon leader peptide PheL	NA	NA	NA	NA
WP_020454769.1\|1709026_1710187_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_020454770.1\|1710183_1711056_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_020454771.1\|1711124_1712246_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_020454772.1\|1712255_1713326_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0B6VT43	Edwardsiella_phage	2.1e-91	52.3
WP_020454773.1\|1713509_1714871_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_189660116.1\|1714934_1715360_-	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_020454775.1\|1715759_1716611_-	phage repressor protein CI	Q6K1G0	Salmonella_virus	6.1e-89	58.8
WP_020454776.1\|1717142_1717481_+	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	3.4e-35	66.7
WP_020454777.1\|1717548_1717776_+	DUF2732 family protein	NA	NA	NA	NA
WP_020454778.1\|1717775_1717997_+	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	7.4e-23	74.6
WP_020454779.1\|1717997_1720052_+	replication endonuclease	A0A218M4H2	Erwinia_phage	9.3e-253	65.5
WP_017459947.1\|1720126_1720312_+	hypothetical protein	A0A0M5M1G5	Salmonella_phage	7.8e-18	77.0
WP_020454780.1\|1720522_1720726_+\|tail	tail protein X	Q858W3	Yersinia_virus	7.0e-20	75.0
WP_017459945.1\|1720716_1720947_+	primosomal protein	A0A218M4L5	Erwinia_phage	4.0e-11	44.6
WP_020454781.1\|1720921_1721431_+	lysozyme	A0A218M4K3	Erwinia_phage	5.6e-66	74.2
WP_020454782.1\|1721427_1721841_+\|lysis	LysB family phage lysis regulatory protein	A0A0M4R2N5	Salmonella_phage	1.9e-16	63.5
WP_044489451.1\|1721948_1722416_+\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	3.7e-48	61.4
WP_020454784.1\|1722493_1723129_+\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	7.2e-95	81.5
WP_020454785.1\|1723125_1723473_+	GPW/gp25 family protein	A0A0F7LDQ1	Escherichia_phage	6.1e-40	70.4
WP_020454786.1\|1723477_1724386_+\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	1.4e-128	77.8
1723847:1723862	attL	NA	NA	NA	NA
WP_020454787.1\|1724378_1724987_+\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	8.1e-88	78.7
WP_020454788.1\|1725142_1726234_+\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	9.4e-119	62.7
WP_020454789.1\|1726233_1726830_+\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	3.4e-62	60.4
WP_020454791.1\|1728264_1728681_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	2.5e-27	45.3
WP_020454792.1\|1728819_1730001_+\|tail	phage tail sheath protein	S4TRX2	Salmonella_phage	8.1e-201	87.8
WP_020454793.1\|1730013_1730532_+\|tail	phage major tail tube protein	Q858V0	Yersinia_virus	8.5e-86	88.4
WP_020454794.1\|1730592_1730874_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.0e-29	78.4
WP_017459930.1\|1730906_1731026_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.3e-13	87.2
WP_020454795.1\|1731018_1732791_+\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	9.2e-39	40.9
WP_020454796.1\|1732805_1733264_+\|tail	phage tail protein	A0A0F7LBX3	Escherichia_phage	1.2e-48	65.2
WP_020454797.1\|1733263_1734400_+	phage late control D family protein	A0A0F7LDZ2	Escherichia_phage	5.8e-95	48.4
WP_020454798.1\|1734478_1734673_+	ogr/Delta-like zinc finger family protein	Q37973	Salmonella_virus	1.1e-19	78.8
WP_004104634.1\|1735100_1735448_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_020454799.1\|1735489_1736257_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_017459924.1\|1736287_1736836_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_017459923.1\|1736854_1737103_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_017459922.1\|1737360_1738722_-	signal recognition particle protein	NA	NA	NA	NA
WP_020454801.1\|1738888_1739677_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_025263874.1\|1739694_1740981_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_147271691.1\|1741026_1741623_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_020454803.1\|1741746_1742625_+	NAD(+) kinase	NA	NA	NA	NA
WP_020454804.1\|1742712_1744374_+	DNA repair protein RecN	NA	NA	NA	NA
WP_017459915.1\|1744521_1744863_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_020454805.1\|1744999_1745293_-	RnfH family protein	NA	NA	NA	NA
WP_044489456.1\|1745282_1745759_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_017459912.1\|1745878_1746361_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.4e-29	47.4
WP_020454807.1\|1747346_1748549_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	1.3e-105	48.5
1752523:1752538	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2323154 : 2362759

Erwinia_phage(30.0%)

integrase,head,terminase,holin,portal,capsid,lysis,tRNA,tail,plate

attL 2329342:2329357|attR 2363699:2363714

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020455307.1\|2323154_2324168_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.4e-108	59.2
WP_001144069.1\|2324406_2324622_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_020455308.1\|2324790_2326536_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	9.2e-76	37.2
WP_020455309.1\|2326692_2328534_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.3e-35	33.7
WP_020455310.1\|2328592_2329099_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
2329342:2329357	attL	NA	NA	NA	NA
WP_020455311.1\|2329468_2329687_-	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	3.3e-31	83.1
WP_020455312.1\|2329761_2330943_-	phage late control D family protein	A0A218M4J7	Erwinia_phage	2.3e-163	77.0
WP_020455313.1\|2330942_2331419_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	4.9e-64	75.2
WP_020455314.1\|2331431_2333903_-\|tail	phage tail tape measure protein	Q7Y4C8	Escherichia_virus	3.4e-257	66.4
WP_110093618.1\|2333895_2334033_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	3.7e-17	86.7
WP_020455316.1\|2334047_2334323_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.1e-36	87.9
WP_020455317.1\|2334384_2334903_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	2.8e-89	93.0
WP_020455318.1\|2334916_2336107_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	1.1e-202	88.6
WP_020455319.1\|2336601_2337183_-\|tail	tail fiber assembly protein	E5G6P1	Salmonella_phage	1.2e-16	32.2
WP_020455320.1\|2337182_2338427_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	4.1e-110	47.4
WP_020455321.1\|2338423_2339035_-\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	2.6e-94	84.1
WP_020455322.1\|2339027_2339936_-\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	3.7e-129	78.5
WP_020455323.1\|2339940_2340288_-	GPW/gp25 family protein	A0A0F7LDQ1	Escherichia_phage	7.0e-44	78.3
WP_020455324.1\|2340284_2340920_-\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	3.3e-100	86.7
WP_020455325.1\|2340992_2342054_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_020455326.1\|2342147_2343101_+	hypothetical protein	NA	NA	NA	NA
WP_020455327.1\|2343121_2343574_-	phage virion morphogenesis protein	O80313	Escherichia_phage	1.6e-43	63.3
WP_044489490.1\|2343566_2344034_-\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	1.7e-64	77.9
WP_020455329.1\|2344141_2344555_-\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	6.2e-47	73.0
WP_020455330.1\|2344551_2345061_-	lysozyme	A0A218M4K3	Erwinia_phage	5.2e-72	79.0
WP_020455331.1\|2345044_2345281_-\|holin	holin	A0A218M4L5	Erwinia_phage	6.9e-11	45.2
WP_020455332.1\|2345271_2345475_-\|tail	tail protein X	U5N3E7	Enterobacteria_phage	1.8e-23	77.6
WP_020455333.1\|2345474_2345978_-\|head	head completion/stabilization protein	M1SNN6	Escherichia_phage	8.0e-73	81.1
WP_020455334.1\|2346074_2346833_-\|terminase	terminase endonuclease subunit	Q94MI7	Enterobacteria_phage	5.2e-84	68.9
WP_020455335.1\|2346836_2348009_-\|capsid	phage major capsid protein, P2 family	O80304	Escherichia_phage	3.7e-129	62.3
WP_020455336.1\|2348045_2348903_-\|capsid	GPO family capsid scaffolding protein	Q6K1I7	Salmonella_virus	1.9e-114	72.6
WP_020455337.1\|2349080_2350850_+\|terminase	terminase ATPase subunit family protein	A0A0M4RE51	Salmonella_phage	7.0e-297	83.7
WP_020455338.1\|2350849_2351887_+\|portal	phage portal protein	Q6K1J0	Salmonella_virus	2.1e-160	78.3
WP_044489492.1\|2352207_2354232_-	hypothetical protein	NA	NA	NA	NA
WP_020455340.1\|2354233_2354698_-	hypothetical protein	NA	NA	NA	NA
WP_044489739.1\|2354711_2355620_-	hypothetical protein	NA	NA	NA	NA
WP_020455342.1\|2355833_2356019_-	hypothetical protein	A0A218M4I0	Erwinia_phage	5.8e-13	70.9
WP_020455343.1\|2356156_2358385_-	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	87.1
WP_020455344.1\|2358381_2358657_-	DUF3850 domain-containing protein	A0A0P0I3U9	Klebsiella_phage	4.6e-14	52.6
WP_020455345.1\|2358653_2358878_-	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	3.8e-27	81.1
WP_020455346.1\|2358877_2359105_-	DUF2732 domain-containing protein	F1BUS3	Erwinia_phage	1.1e-21	73.3
WP_020455347.1\|2359172_2359511_-	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	2.8e-45	81.2
WP_020455348.1\|2359474_2359663_-	DUF2724 domain-containing protein	Q6K1F7	Salmonella_virus	3.9e-17	63.1
WP_020455349.1\|2359670_2360180_-	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	1.5e-79	86.4
WP_020455350.1\|2360210_2360432_-	hypothetical protein	NA	NA	NA	NA
WP_020455351.1\|2360566_2361148_+	phage repressor protein	F1BUS8	Erwinia_phage	2.2e-34	41.4
WP_020455352.1\|2361162_2361732_+	PH domain-containing protein	Q4ZA70	Staphylococcus_virus	2.6e-19	34.3
WP_020455353.1\|2361736_2362759_+\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	2.0e-123	64.6
2363699:2363714	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3095076 : 3106225

Salmonella_phage(69.23%)

holin,integrase

attL 3095182:3095196|attR 3113821:3113835

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020455927.1\|3095076_3096450_-	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	1.1e-15	24.1
3095182:3095196	attL	NA	NA	NA	NA
WP_044489537.1\|3096446_3097145_-	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	3.1e-06	30.3
WP_020455929.1\|3097296_3097800_+	cell-envelope stress modulator CpxP	NA	NA	NA	NA
WP_020455930.1\|3097976_3098957_-\|integrase	tyrosine-type recombinase/integrase	A0A0M4RTQ0	Salmonella_phage	9.2e-166	87.1
WP_020455931.1\|3099026_3099347_-	transcriptional regulator	A0A0M5M1I9	Salmonella_phage	2.0e-32	67.0
WP_020455932.1\|3099456_3099738_+	hypothetical protein	A0A0M4RCW1	Salmonella_phage	1.4e-31	63.4
WP_071925293.1\|3099992_3100196_+	DUF4761 family protein	A0A0M5M1I3	Salmonella_phage	7.8e-19	66.2
WP_020455934.1\|3100185_3100413_+	DUF2724 domain-containing protein	A0A0M4S6M9	Salmonella_phage	1.6e-25	72.0
WP_044489767.1\|3100510_3100720_+	hypothetical protein	A0A0M4R514	Salmonella_phage	2.4e-15	57.4
WP_189660069.1\|3100760_3100958_+	DUF2732 family protein	NA	NA	NA	NA
WP_020455937.1\|3101145_3101388_+	hypothetical protein	NA	NA	NA	NA
WP_020455938.1\|3101390_3103769_+	replication endonuclease	A0A0M4RTM8	Salmonella_phage	1.4e-292	68.5
WP_071925246.1\|3104155_3104347_+	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	1.2e-18	76.3
WP_044489769.1\|3104359_3104770_+	type II toxin-antitoxin system HicB family antitoxin	A0A0D4DCG1	Acinetobacter_phage	4.1e-35	56.2
WP_020455939.1\|3105519_3105843_+\|holin	phage holin family protein	A0A0M3ULH4	Salmonella_phage	5.2e-25	54.0
WP_020455940.1\|3105832_3106225_+	M15 family metallopeptidase	S4TRL9	Salmonella_phage	4.1e-56	76.6
3113821:3113835	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_021492

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_021500

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection