CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_021505	Pseudomonas putida NBRC 14164, complete genome	5 crisprs	DEDDh,csa3,cas3,DinG,WYL	0	3	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_021505_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021505_1

1031276-1031370

Orphan

Consensus_repeat	Method
CAGGTTGATGGCGGCAAGCTGGA	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NC_021505_1

>merge|NC_021505|1|1031276-1031370|CRISPRCasFinder
CAGGTTGATGGCGGCAAGCTGGATGCCCAGTTCAAAGGCCTGAACGAGCAGGTTGCCGCGCTGAAGGCCGCGCAGGTTGATGGCGGCAAGCTGGA

>NC_021505|1|1|1031276-1031370|CRISPRCasFinder
CAGGTTGATGGCGGCAAGCTGGA	TGCCCAGTTCAAAGGCCTGAACGAGCAGGTTGCCGCGCTGAAGGCCGCG
CAGGTTGATGGCGGCAAGCTGGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_021505.1\|WP_016498081.1\|1019353_1020418_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226020
NC_021505.1\|WP_016498082.1\|1020438_1021866_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|226019
NC_021505.1\|WP_016498091.1\|1033273_1033855_+\|DUF479-domain-containing-protein	unknown	unknown	gnl\|CDD\|225666
NC_021505.1\|WP_016498090.1\|1032820_1033123_-\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713
NC_021505.1\|WP_016498080.1\|1018253_1019351_-\|DUF1513-domain-containing-protein	unknown	unknown	gnl\|CDD\|226021
NC_021505.1\|WP_016498084.1\|1023639_1025694_-\|GGDEF-and-EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NC_021505.1\|WP_016498096.1\|1037843_1038146_+\|hypothetical-protein	unknown	unknown	unknown
NC_021505.1\|WP_016498086.1\|1028730_1029621_+\|LysR-family-transcriptional-regulator-ArgP	unknown	unknown	gnl\|CDD\|235144
NC_021505.1\|WP_016498083.1\|1022143_1023481_-\|imelysin	unknown	unknown	gnl\|CDD\|226018
NC_021505.1\|WP_016498097.1\|1038190_1038772_+\|YceI-family-protein	unknown	unknown	gnl\|CDD\|214870
NC_021505.1\|WP_016498095.1\|1036764_1037847_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|224594
NC_021505.1\|WP_012312902.1\|1027196_1027793_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NC_021505.1\|WP_016498085.1\|1028031_1028631_-\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|224198
NC_021505.1\|WP_016498098.1\|1038773_1039931_+\|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein	unknown	unknown	gnl\|CDD\|224419
NC_021505.1\|WP_016498093.1\|1034775_1035531_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225717
NC_021505.1\|WP_016497637.1\|1025955_1026909_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NC_021505.1\|WP_016498089.1\|1031753_1032803_-\|alkene-reductase	unknown	unknown	gnl\|CDD\|239243
NC_021505.1\|WP_016498087.1\|1029670_1030666_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NC_021505.1\|WP_016498094.1\|1035688_1036576_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367175
NC_021505.1\|WP_016498092.1\|1033987_1034776_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251

Protein	Function_ID	Function_description	E-value
NC_021505.1\|WP_016498081.1\|1019353_1020418_-\|hypothetical-protein	gnl\|CDD\|226020	COG3489, COG3489, Predicted periplasmic lipoprotein [General function prediction only].	1.24415e-116
NC_021505.1\|WP_016498082.1\|1020438_1021866_-\|c-type-cytochrome	gnl\|CDD\|226019	COG3488, COG3488, Predicted thiol oxidoreductase [Energy production and conversion].	0
NC_021505.1\|WP_016498091.1\|1033273_1033855_+\|DUF479-domain-containing-protein	gnl\|CDD\|225666	COG3124, COG3124, Uncharacterized protein conserved in bacteria [Function unknown].	1.78831e-72
NC_021505.1\|WP_016498090.1\|1032820_1033123_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	2.6441e-17
NC_021505.1\|WP_016498080.1\|1018253_1019351_-\|DUF1513-domain-containing-protein	gnl\|CDD\|226021	COG3490, COG3490, Uncharacterized protein conserved in bacteria [Function unknown].	5.76652e-151
NC_021505.1\|WP_016498084.1\|1023639_1025694_-\|GGDEF-and-EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.10483e-113
NC_021505.1\|WP_016498086.1\|1028730_1029621_+\|LysR-family-transcriptional-regulator-ArgP	gnl\|CDD\|235144	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator.	1.48738e-158
NC_021505.1\|WP_016498083.1\|1022143_1023481_-\|imelysin	gnl\|CDD\|226018	COG3487, IrpA, Uncharacterized iron-regulated protein [Inorganic ion transport and metabolism].	0
NC_021505.1\|WP_016498097.1\|1038190_1038772_+\|YceI-family-protein	gnl\|CDD\|214870	smart00867, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to polyisoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	4.8668e-20
NC_021505.1\|WP_016498095.1\|1036764_1037847_+\|serine-hydrolase	gnl\|CDD\|224594	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms].	2.45737e-34
NC_021505.1\|WP_012312902.1\|1027196_1027793_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	2.19156e-113
NC_021505.1\|WP_016498085.1\|1028031_1028631_-\|amino-acid-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	4.18423e-70
NC_021505.1\|WP_016498098.1\|1038773_1039931_+\|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein	gnl\|CDD\|224419	COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism].	1.50932e-78
NC_021505.1\|WP_016498093.1\|1034775_1035531_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225717	COG3176, COG3176, Putative hemolysin [General function prediction only].	8.76643e-64
NC_021505.1\|WP_016497637.1\|1025955_1026909_-\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	2.40164e-20
NC_021505.1\|WP_016498089.1\|1031753_1032803_-\|alkene-reductase	gnl\|CDD\|239243	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.	0
NC_021505.1\|WP_016498087.1\|1029670_1030666_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	2.93837e-53
NC_021505.1\|WP_016498094.1\|1035688_1036576_+\|hypothetical-protein	gnl\|CDD\|367175	pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. Central domain of Acyl-CoA dehydrogenase has a beta-barrel fold.	3.35577e-09
NC_021505.1\|WP_016498092.1\|1033987_1034776_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	1.32607e-29

>NC_021505.1|WP_016498087.1|1029670_1030666_+|NAD(P)-dependent-oxidoreductase
MRILVTGASGFIGGRFARFALEQGLDVRVSGRRAEGVEHLVKRGAQFIPGDLGDPELARRLCQGMEAVVHCAGAVGNWGRYQDFYQGNVVVTENVVEGCLKEHVRRLVHLSSPSIYFNGRSRLDIREDQVPRRFHDHYGQTKHLAEQKVFGAQEFGLEVLALRPRFVTGAGDASIFPRLMQMQRKGRVAIIGNGLNKVDFTSVHNLNEALLSALFADDRALGQAYNISNGQPLPLWDVVNYVMRQMQLPQVTRYRSYGLAYSLAAVNEAACMLWPGRPQPTLSRLGMQVMSRDFTLDISRARQYLDYQPKVSLWTALDEFCGWWKHLPPGQ
>NC_021505.1|WP_016498086.1|1028730_1029621_+|LysR-family-transcriptional-regulator-ArgP
MFDYKLLAALAAVIEQGGFERAAQVLGLSQSAISQRIKLLEARVGQPVLVRATPPSPTEVGRQLLNHVQQVRLLERDLQRQVPALDEEGMPERLRIALNADSLATWWAGAVGNFCAQQNVLTDLVVEDQEVGLKRMRAGEVAACLCGSERPVAGARSLLLGAMRYRALASPGFMARHFPQGFVASRLARTPAIVYGPDDFLQHRYLASLGIEDGFLHHLCPSSEGFLRMTEAGLGWGLVPELQAREQLASGQLVEICSDTPIDVPLYWHHWRNGGQLLAQLTDHLRHTAQQWLVPL
>NC_021505.1|WP_016498085.1|1028031_1028631_-|amino-acid-transporter
MWQSYLNGMLVAFGLIMAIGTQNAFVLAQSLRREHHLPVAALCIVCDALLVAAGVFGLATVLAQNPTLLAVARWGGALFLIWYGAKALRSAFSKQSLQHQEGQGMRSRRAVLLSALAVTLLNPHVYLDTVLLIGSLGAQQTEPGAYVAGAASASLIWFSTLAIGAAWLAPWLARPATWRMLDLMVAVMMFAVAAQLIFN
>NC_021505.1|WP_012312902.1|1027196_1027793_-|superoxide-dismutase-[Fe]
MAFELPPLPYAHDALQPHISKETLEYHHDKHHNTYVVNLNNLVPGTEFEGKTLEEIVKSSSGGIFNNAAQVWNHTFYWNCLSPNGGGQPTGALAEAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKKADGSLALASTIGAGCPLTSGDTPLLTCDVWEHAYYIDYRNLRPKYVEAFWNLVNWAFVAEQFEGKTFKA
>NC_021505.1|WP_016497637.1|1025955_1026909_-|IS110-family-transposase
MAMQVGKLIVGADVAKAELVIHHDDRDEIIKVKNTKPEIKKWLKQQPLNTAIAVEATNVYHLDLVELAHSLGFEVYVIDGFQLSNYRKSVGVRVKTDPTDARLLSRFLRNEGEDLRPWTPPPAVYGKLQSLLRRRAALVTARTAMTQSWANEALLKAAFTTFVKSIDRLDLLIQKKIKEVLREAGLHEQVARCQAVEGIGFLTATALVMAFMRGEFKSSDSYIAFLGMDLRVIDSGQKNGRRRLTKRGCSEIRRLLHNAAMSASRTATWKGLYEQHRNAGKATTQALVILARKLARVAFALMKNQDEYVTKGGKAPC
>NC_021505.1|WP_016498084.1|1023639_1025694_-|GGDEF-and-EAL-domain-containing-protein
MKLELRNSLSVKLLRVVLLSALAVGVVLSCAQIVYDTYKTRQAVNNDAQRILDMFRDPSTQAVYSLDREMGMQVMEGLFQDESVRMASIGHPNETMLAEKSRPLQDMSMRWLTDPILGQERTYTTQLVGRGPYSEYYGDLSITLDTSSYGEDFLINAVIIFISGVLRALAMGLVLYLVYHWLLTKPLSKIIEHLTQINPDRPSQHQIPLLKGHEKNELGLWVNTANQLLASIERNTHLRHEAENSLQRMAQYDFLTGLPNRQQLQQQLDKILVDGGRLQHRVAVLCVGLDDFKGINEQFSYQVGDQLLLALADRLRAHSGRLGALARLGGDQFALVQANIEQPYEAAELAQSILDDLEVPFDLDHHQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLRWQHPELGMVPPDQFIPLAEQNGSIISIGEWVLDQACRQLREWHDQGFSELRMAVNLSTVQLHHSELPRVVNNLLQAYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKIDKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQETYIVAQGCHEGQGYHYSKPLSARELTSFLKQAQRNQVSML
>NC_021505.1|WP_016498083.1|1022143_1023481_-|imelysin
MIRMPLASASLLAIAIALAGCGEKDDKAAAPQAQAPAAAASTTAAAPGAVDEAAGKAVVKHYAEIVYAVYSDSLSTAKALQTAVDAFLAKPNDETLKAAKEAWVAARVPYLQTEAFRFGNTIIDDWEGQVNAWPLDEGLIDYVDKSYEHALGNPAAGANIIANTEIQVGEEKVDVKDITPEKLASLNELGGSEANVATGYHAIEFLLWGQDLNGTGPGAGNRPASDYLEGQGATGGHNDRRRAYLKAVTDLLVKDLEEMVGNWAPNVADNYRATLEAEPVNDGLRKMLFGMGSLSLGELAGERMKVSLEANSPEDEQDCFSDNTHYSHFYDAKGIRNVYLGEYTRPDGTKVTGPSLSSLVAKADPAADATLKADLEATEAKIQVIVDHALKGEHYDQLIAADNAAGNQIVRDAIAALVKQTGAIEQAAGKLGIANLNPDTADHEF
>NC_021505.1|WP_016498082.1|1020438_1021866_-|c-type-cytochrome
MSSSLSRLSPLLLTLALAACDDAPRFTQAEPGEALSGGKATVQRSDRNAYSLPSANLSPERRLDFAVGNSFFRNPWVIAPSTTTARDGLGPLFNTNACQNCHVRDGRGHPPEPDDSNAVGMLVRLSIPDQPYLAKVIERLGVVPEPVYGTQLQDMAIPGVAPEGKVRVSYTQETVSFKDGHQVELRKPTLQITQLGYGVMHPDTRFSARVAPPMIGLGLLEAIPEADLLANEDPDDHNRDGIRGRANRVWDDAQGKTVVGRFGWKAGQPNVNQQNVHAFVGDMGLTSTLQPKDDCTPAQADCLAAPNGDGADGEKEVSDNILRLVTFYTRNLAVPARRDVNAPQVLAGKNLFYQAGCQGCHTPQFTTAADAAEPELANQVIRPYTDLLLHDMGPGLADERTEFAANGQDWRTPPLWGVGLNETVSGHSQFLHDGRARNLLEAVLWHGGEADAARNFVLTFNAEQRAALLAFLNSL
>NC_021505.1|WP_016498081.1|1019353_1020418_-|hypothetical-protein
MFRPKLLFTSLAALALGACSPQDPQAVTSAAIAKQVILPTYSRWVEADRALAASALAYCEGKEDLDKARADFLNAQKAWAELQPLLVGPLAEGNRAWQVQFWPDKKNLVGRQVEQLVNGDKPVDAASLGKSSVVVRGLSAYEYILFDSKPDIATAEQKARYCPLLVAIGEHQKVLAEEILKGWNSTDGMLSQMTKFPNQRYADSHEAIADLLRSQVTALDTLKKKLGAPMGRQSKGIAQPLQAEAWRSHNSLKSLEATLKAAETVWVGVDNQGLRGLLPSDQKALADKIDAAYATSLKLLADNQKTLGELLADDAGQQTLNQIYDSLNVVHRLHEGELAKALNIQLGFNANDGD
>NC_021505.1|WP_016498080.1|1018253_1019351_-|DUF1513-domain-containing-protein
MLRRQALKLGSVLLSALTLGGWSLFRNKGSEPLLLSARDDGDGKHYAVGFRLDGTEVFSTQVAQRCHAIIHHPEQPIALFVARRPGTESYLVDLRDGRLLQTVVSQPNRHFYGHAVVHKGGEWLYATENDTTDPGRGVLGVYRFEGERLVHTGEIPTHGIGPHEVAWLPDGETLIVANGGIRTEAESRVEMNLDAMQPSLVLMQRDGTLLSKETLAQQMNSVRHLAVGSDGTIAACQQFMGDADETAELLAIKRPGEPFKAFPVPERQLQAMAQYTASVAIHSELRLVALTAPRANRLFVWDLDSGAVRLDAPMPDCAGVGAVKDGFVVTSGQGRCRFYDCRKAELVGQPMNLPSGFWDNHLHLV
>NC_021505.1|WP_016498089.1|1031753_1032803_-|alkene-reductase
MTTLFDPITLGDLQLPNRIIMAPLTRCRADEGRVPNALMAEYYVQRASAGLILSEATSVSAMGVGYPDTPGIWNDEQVRGWNNVTKAVHAAGGRIFLQLWHVGRISHPSYLNGELPVAPSAIQPKGHVSLVRPLSDYPTPRALETEEINDIVEAYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGANRVGVHLAPRADAHDMGDADRAETFSYVARELGKRGIAFICSREREADDSIGPLIKEAFGGLYIVNERFDKASANAALASGKADAVAFGVPFIANPDLPARLAADAPLNEARPETFYGKGPVGYIDYPRL
>NC_021505.1|WP_016498090.1|1032820_1033123_-|helix-turn-helix-transcriptional-regulator
MPLDLDEIIKALAHPVRREILSWLKDPATQFPDQYHSTENGVCAGQIDQRCGLSQSTVSAHLATLQRAGLISSQKIGQWHFFKRNEATIEAFLEQLRQAL
>NC_021505.1|WP_016498091.1|1033273_1033855_+|DUF479-domain-containing-protein
MNYLAHLHLGGPAPQQLLGSLYGDFVKGSLEGRFPPALEAAIRLHRHIDSYTDQHPLVLAALARFPRERRRFAGIVLDVFFDHCLVRDWGNYAEQPLEQFTGAFYRVLLAEPELPGRLARIAPFMAADDWLGAYGDFATLEHVFNGIARRLSRPEGMAGVMVELERLYEPLLADFREFYPQLQAFAAARMPDS
>NC_021505.1|WP_016498092.1|1033987_1034776_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MPKLRVVARLSRLLLVLLLGMLMASLVALGERLGFKAPIERRQRWTCLFMKRLVAALPFDVRVVGELPQRPMLWVSNHVSWTDIPLLGMLLPLSFLSKAEVRHWPVAGWLAEKAGTLFIRRGGGDSQRLREQIAGQLGLARPLLIFPEGTTTSGRSLRTFHGRLLAGAIDRGVAVQPVAIQYLRDGQIDPIAPFIGDDDLVSHLMRLFAQPRGEVCIELLQPIGSVGKERAVLALQAQQAIHLALFGVEEVEAVPRRQARAA
>NC_021505.1|WP_016498093.1|1034775_1035531_-|GNAT-family-N-acetyltransferase
MTRIAHSGDNSTERRLQAERLVGAAALQEAQALRFKVFSAEFKAKLKGAEQGLDMDDYDVHCRHIGVRDLSTGELVATTRLLDHQAASSLGRFYSEEEFRLHGLLQLQGPILELGRTCVAPDYRNGGTIAVLWGELAEVLNEGRYSYLMGCASIPMQDGGIQAHAVMQRLRDRYLCNEHLRAEPKKPLPSLALPGNVIAEMPPLLKAYMRLGAKICGEPCWDEDFQVADVFILLKRDDLCPRYARHFKAAV
>NC_021505.1|WP_016498094.1|1035688_1036576_+|hypothetical-protein
MAWLQRLNDPLRHAPADTLGETYAALLERLGPVAPFELAALGGRAMATPGLAFLVGYQAALRVLWPSAPASLGALCATERRSVRPADMHTRLDGLRLSGSKDFVTAGLEAEWLLVAARSETAGAAPQLNLAVVYPGEPGVTLEPLPTLPLMPEVGHGRLLLEQATCELLAGDGWDAYVKPFRSLEDLYVLTALTAWLYGVGQESAWPQDLRLQLLGLLAGCAEGSRQCADSVSCHLLLGGLFAQFQALRGAIDAALAAGPVHWAQIWQRDQGVMTLAAAAREKRLNKAWAAAGLS
>NC_021505.1|WP_016498095.1|1036764_1037847_+|serine-hydrolase
MLKGLLLVLCLALATAEAEDWPDPAWQNDPATFDWQAVDAYAFPPRTAPDRSGIRTDALLIIRDGRILHERYTAPTTAATAHLTWSVSKSVLATLMGVAQGEGRFQLEDPVTRFYPAMRGHPGIRMADLLHWASGLDWQEDYEYAPLKSSVVAMLYTRGREDMAAYTAARGASASPGQRFLYSSGDSNLLAAALRGMLDAGQYPDYPWHALFTPLGIDSAVWERDRAGTYVGSSYLYLSARDLARIGLLMQRDGRWQGRQLLPKAWVAFNRTAFDHAEPVPGEATPGGHWWLNQPLAGAARPWPSAPEDTYAALGHWGQALYVLPAQKLVVVRYADDRDGSYQHDELLKRVLAAMAREGT
>NC_021505.1|WP_016498096.1|1037843_1038146_+|hypothetical-protein
MKRALLLLLVLLGLLLWAWQERQALADFPGILSAYSAKEYCSCRFVMGFEQAYCQGYVKQWLPLSLLEENSQQRLVTAEGLGRRNQAAWQGLREGCRLLP
>NC_021505.1|WP_016498097.1|1038190_1038772_+|YceI-family-protein
MFKLPRLLPALLLALCLPAHANWHLDGESSRLSFITGKNGDTAEVHRFLVLHGTVDRKGVAGLSIEMDSVSSGIPLRDEQMRDNLFEVGRFAEATVKAQIDLRPINDLADGAQIELRLPLTVTLHGQSHSYNALLLATRLDARRFQVVTLEPLLLRAEDFGLLPGLESLRKFAGLKSINPSVPVSAVLIFTAR
>NC_021505.1|WP_016498098.1|1038773_1039931_+|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein
MPGPVFPWRDGNQFELLIDGPEFFPRMLEAIVGAEFQVDLELYLVEAGACAEAVVEVLEQAARRGVRVRCLFDDYGSLAFNSALRQRLLEAGVYLRWYNRLRWKRGLRNLYRDHRKLLLVDERWAVVGGTGVTDEFWKPGDATSEWHEVMVQIQGPVVTDWQLLFDRQWSANNRRTAWRPAEGFGLPRLPKLPAHGQGMGRVAYADARQHQDILHSLVRALNSGKQRVWLATPYFLPTWSVRRSLRRAASKGLDVRLLLTGPRTDHPSVRYAGHRYYPRLLRAGVRIFEYQPCFLHLKMAVVDDWVSVGSCNFDHWNLRFNLEANIEALDPPLTAAVVASFERDFALSQEVDLDHWHARPLWRRVKQRIWGWIDRLVVNVLDRRD

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Crispr_ID: NC_021505_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021505_2

1964580-1964653

Orphan

Consensus_repeat	Method
TCATCACCTTTACGTTAACGTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021505_2

>merge|NC_021505|2|1964580-1964653|CRISPRCasFinder
TCATCACCTTTACGTTAACGTAAACCTGCGAGAGATCACTGTCAATCCACTCATCACCTTTACGTAAACGTAAA

>NC_021505|2|2|1964580-1964653|CRISPRCasFinder
TCATCACCTTTACGTTAACGTAAA	CCTGCGAGAGATCACTGTCAATCCAC
TCATCACCTTTACGTAAACGTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_021505.1\|WP_016498815.1\|1977716_1978511_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|226098
NC_021505.1\|WP_016498802.1\|1957844_1958501_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224885
NC_021505.1\|WP_041167663.1\|1978692_1980846_-\|glycogen-debranching-protein-GlgX	unknown	unknown	gnl\|CDD\|131155
NC_021505.1\|WP_016498805.1\|1961605_1963213_-\|3-methylcrotonyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|178415
NC_021505.1\|WP_016498798.1\|1954757_1955735_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_021505.1\|WP_016498799.1\|1955754_1956270_-\|DUF4880-domain-containing-protein	unknown	unknown	gnl\|CDD\|379797
NC_021505.1\|WP_016498803.1\|1958837_1960790_-\|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha	unknown	unknown	gnl\|CDD\|227111
NC_021505.1\|WP_016498804.1\|1960786_1961602_-\|gamma-carboxygeranoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|168168
NC_021505.1\|WP_016498808.1\|1966598_1967459_-\|RHS-repeat-associated-core-domain-containing-protein	unknown	unknown	gnl\|CDD\|274730
NC_021505.1\|WP_016498797.1\|1953291_1954602_-\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NC_021505.1\|WP_016498807.1\|1964716_1966399_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236236
NC_021505.1\|WP_016498811.1\|1968510_1970529_+\|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase	unknown	unknown	gnl\|CDD\|200482
NC_021505.1\|WP_016498806.1\|1963232_1964396_-\|isovaleryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173845
NC_021505.1\|WP_016498801.1\|1957145_1957799_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224885
NC_021505.1\|WP_016498814.1\|1976320_1977397_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|377133
NC_021505.1\|WP_016498810.1\|1968209_1968371_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237940
NC_021505.1\|WP_016498812.1\|1970689_1974007_+\|maltose-alpha-D-glucosyltransferase	unknown	unknown	gnl\|CDD\|274140
NC_021505.1\|WP_115283702.1\|1967874_1968066_-\|hypothetical-protein	unknown	unknown	unknown
NC_021505.1\|WP_016498813.1\|1974007_1976218_+\|1,4-alpha-glucan-branching-protein-GlgB	unknown	unknown	gnl\|CDD\|235445
NC_021505.1\|WP_016498800.1\|1956703_1957015_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_021505.1\|WP_016498802.1\|1957844_1958501_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	1.02266e-15
NC_021505.1\|WP_041167663.1\|1978692_1980846_-\|glycogen-debranching-protein-GlgX	gnl\|CDD\|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NC_021505.1\|WP_016498805.1\|1961605_1963213_-\|3-methylcrotonyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|178415	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.	0
NC_021505.1\|WP_016498798.1\|1954757_1955735_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.43238e-40
NC_021505.1\|WP_016498799.1\|1955754_1956270_-\|DUF4880-domain-containing-protein	gnl\|CDD\|379797	pfam16220, DUF4880, Domain of unknown function (DUF4880). This domain can be found on the N-terminal of uncharacterized proteins from various Rhodopseudomonas and Pseudomonas species, often, but not always followed by the ron siderophore sensor protein family (FecR, PF04773). The function of this domain is unknown.	3.12434e-06
NC_021505.1\|WP_016498803.1\|1958837_1960790_-\|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NC_021505.1\|WP_016498804.1\|1960786_1961602_-\|gamma-carboxygeranoyl-CoA-hydratase	gnl\|CDD\|168168	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated.	0
NC_021505.1\|WP_016498808.1\|1966598_1967459_-\|RHS-repeat-associated-core-domain-containing-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	1.21013e-16
NC_021505.1\|WP_016498797.1\|1953291_1954602_-\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.15947e-151
NC_021505.1\|WP_016498807.1\|1964716_1966399_+\|AMP-binding-protein	gnl\|CDD\|236236	PRK08315, PRK08315, AMP-binding domain protein; Validated.	0
NC_021505.1\|WP_016498811.1\|1968510_1970529_+\|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase	gnl\|CDD\|200482	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins. GlgE is a (1,4)-a-D-glucan:phosphate a-D-maltosyltransferase, involved in a-glucan biosynthesis in bacteria. It is also an anti-tuberculosis drug target. GlgE isoform I from Streptomyces coelicolor has the same catalytic and very similar kinetic properties to GlgE from Mycobacterium tuberculosis. GlgE from Streptomyces coelicolor forms a homodimer with each subunit comprising five domains (A, B, C, N, and S) and 2 inserts. Domain A is a catalytic alpha-amylase-type domain that along with domain N, which has a beta-sandwich fold and forms the core of the dimer interface, binds cyclodextrins. Domain A, B, and the 2 inserts define a well conserved donor pocket that binds maltose. Cyclodextrins competitively inhibit the binding of maltooligosaccharides to the S. coelicolor enzyme, indicating that the hydrophobic patch overlaps with the acceptor binding site. This is not the case in M. tuberculosis GlgE because cyclodextrins do not inhibit this enzyme, despite acceptor length specificity being conserved. Domain C is hypothesized to help stabilize domain A and could be involved in substrate binding. Domain S is a helix bundle that is inserted within the N domain and it plays a role in the dimer interface and interacts directly with domain B. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NC_021505.1\|WP_016498806.1\|1963232_1964396_-\|isovaleryl-CoA-dehydrogenase	gnl\|CDD\|173845	cd01156, IVD, Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.	0
NC_021505.1\|WP_016498801.1\|1957145_1957799_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	6.45157e-21
NC_021505.1\|WP_016498814.1\|1976320_1977397_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	1.22664e-29
NC_021505.1\|WP_016498810.1\|1968209_1968371_-\|hypothetical-protein	gnl\|CDD\|237940	PRK15313, PRK15313, intestinal colonization autotransporter adhesin MisL.	0.000212848
NC_021505.1\|WP_016498812.1\|1970689_1974007_+\|maltose-alpha-D-glucosyltransferase	gnl\|CDD\|274140	TIGR02456, Trehalose_synthase, trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (). [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NC_021505.1\|WP_016498813.1\|1974007_1976218_+\|1,4-alpha-glucan-branching-protein-GlgB	gnl\|CDD\|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0
NC_021505.1\|WP_016498815.1\|1977716_1978511_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	1.4241e-71

>NC_021505.1|WP_016498806.1|1963232_1964396_-|isovaleryl-CoA-dehydrogenase
MHYPSLNFALGETIDMLRDQVRTFVAAELAPRAAQIDHDNLFPADMWRKFGDMGLLGITVSEEYGGAGLGYLAHVVSMEEISRASASVALSYGAHSNLCVNQINRNGTHEQKLKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKRGDHYVLNGSKTWITNGPDANTYVIYAKTDLDQGAHGITAFIVERDWKGFSRSNKFDKLGMRGSNTCELFFDDVEVPAENILGQLNGGVRVLMSGLDYERVVLSGGPTGIMQSCMDLVVPYIHDRKQFGQSIGEFQLIQGKIADMYTQLNASRAYLYAVAQACDRGETTRKDAAGVILYTAERATQMALEAIQILGGNGYINEFPAGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETR
>NC_021505.1|WP_016498805.1|1961605_1963213_-|3-methylcrotonyl-CoA-carboxylase-subunit-beta
MATLHTQINPRSAEFAGNSAAMLEQVQALRGLLAQVAQGGGPKAQERHTSRGKLLPRERIDRLLDPGSPFLEIGQLAAHEVYGEDVPAAGVIAGIGRVEGVECMIVANDATVKGGSYYPLTVKKHLRAQTIAQQNRLPCIYLVDSGGANLPRQDEVFPDREHFGRIFFNQANMSAQGIPQIAVVMGSCTAGGAYVPAMADEAIMVRQQATIFLAGPPLVKAATGEVVSAEDLGGADVHCRTSGVADHYADNDEHALAIARRSVANLNWHKLGKLQRLAPVAPLYAADELYGVVPADAKQPFDVREVIARLVDGSVFDEFKALFGTTLVCGFAHLHGYPVAILANNGILFAEAAQKGAHFIELACQRGIPLLFLQNITGFMVGKKYEEGGIAKHGAKLVTAVACAQVPKFTVIIGGSFGAGNYGMCGRAYDPRFLWMWPNARIGVMGAEQAAGVLAQVKREQSERSGQPFSAEDEARLKQPILDQYEHQGHPYYSSARLWDDGVIDPAQTRDVLGLALSAALNAPIEQSRFGIFRM
>NC_021505.1|WP_016498804.1|1960786_1961602_-|gamma-carboxygeranoyl-CoA-hydratase
MSDFSTLEVIRDPRGFATLWLSREDKNNAFNAQMIRELIVAIDRLAEDASLRFVLLRGRGRHFSAGADLAWMQQSAQLDFNTNLDDAHELGELMYALHRLKTPTLAVVQGAAFGGALGLISCCDMAIGAEDAQLCLSEVRIGLAPAVISPFVVKAIGERSARRYALTAERFSGIRARELGLLAEVYPASELDAQVEAWVNNLLQNSPQALRATKDLLREVDDGELSPALRRYCENTIARIRVSAEGQEGLRAFLEKRRPAWQTDDKKEPRP
>NC_021505.1|WP_016498803.1|1958837_1960790_-|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha
MSRPVLTTLLVANRGEIACRIMRTAKAMGLTTVAVHSATDRDARHSREADIRVDLGGTKAAESYLLVDKLLAAAKASGAQAIHPGYGFLSENAGFARAIEQAGLIFLGPPATAIDAMGSKSAAKALMDAAGVPLVPGYHGEAQDLDTFRAAAERIGYPVLLKASAGGGGKGMKVVEEESQLADALASAQREAQSSFGDARMLVEKYVLKPRHVEIQVFADQHGNCLYLNERDCSIQRRHQKVVEEAPAPGLSPELRRAMGEAAVRAAQAIGYVGAGTVEFLLDARGEFFFMEMNTRLQVEHPVTEAITGLDLVAWQIRVACGEPLPITQEQVPLIGHAIEVRLYAEDPANEFLPATGTLALYRESAPGEGRRVDSGVSEGDVVSPFYDPMLGKLIAWGENREQARLRLLAMLDEFAIGGVKTNIAFLHRILAHPAFAAAELDTGFIPRHQDVLLPAPHALPAGFWEAAAEAWLQGQPGHKRDDDRSSPWGAHNGLRLGLPARSSLHLASAGQDQAVALERSAASTWQLAGEQLVHDQAGVRRQHLAIRRDGTLYLHWDGEMHAIQAFDPIAEAEAGHGHQGGLGAPMNGSIVRVLVEPGQVVEAGTALVVLEAMKMEHSIRAPHGGTVKALFCQEGDMVSEGTVLVELAE
>NC_021505.1|WP_016498802.1|1957844_1958501_+|helix-turn-helix-domain-containing-protein
MNMDRWIALVRKRMETLGLTQEQLAERVGVSQGSVGHWVNKRRQPKIESMNRTFVELGIPHYNVSLELRIHGLVEEVCREEGADNNLDLMQCIACFRYPVLAWSELGVEEREEPGVFEQTDYLAQGKAFWLTVENDAMSAVSGRSVPQGMRMLVDPGVEAEAGRLVIARQPGKPAIFRELAEEGGQRYLKALNGNYPALLCEEGCEILGVVVRVHGAF
>NC_021505.1|WP_016498801.1|1957145_1957799_+|helix-turn-helix-domain-containing-protein
MENWNAFLKRYKREHNLSQLKLAERLGMTQGGVGHWLRGTRRPTLETINEKLEKLGLVFLEAQVMVVERDILREAPGRYAVEQPVSAQALLYASFRFPVLTWADLQGPLPEAGKCHEQTDYMPAGNAFWLVVENDSMNAASGKSVPEGMRVLVDTGLQAEPGKLVIARQPGRPAVLRQLVEEGGDKMLKPLNTRYPTILCEEGCEFLGVVVRVHGAF
>NC_021505.1|WP_016498800.1|1956703_1957015_-|hypothetical-protein
MKPPKNDETDLDSEAARRALDYYLNPKPQRPTLDNKIWTLHESVTGDQAREHAIALLRCAAATAQETASHQHGSQRELTYALMHMVDMARALLEHKRAADPDF
>NC_021505.1|WP_016498799.1|1955754_1956270_-|DUF4880-domain-containing-protein
MTRLLLPLEHPTPVAEHDADHALLHALKRLPRRVQQVFLLNRLDQLDFATIAARLDLPLASIERNMDQALQAGRSRRDVLSSVAGQWYVRLQSPQVTACERIDFRRWLDADTANLQAFHETELRWRSLLAPARQLGHDGWYRQGRAALSLGGCSIALGLGVAALVLFGLWA
>NC_021505.1|WP_016498798.1|1954757_1955735_+|LysR-family-transcriptional-regulator
MTPTTTTLARDPEAKRFLNDRLDWNLLRTFLVIGQEGSISRAAARLHLSQPAVSQALRRLEEQLDSALVVRRGPRINLSKAGEEVMQIAAELYGTVSRLGPALDSPAETVTGKIRLLSISRIQSRAYDDFLAQFHSDYPQVELEIDVLRSSDVASGLLQKTASFGLSLCRTPQPRLEQRVLLEQRYAFFCGKRHRLFGRKNLTVADLQGENFVSFTSDQMGGNLSPLTVFRDQQGFTGRIVASSPSLDEILRLVGAGYGIGCLPEHIVAADVQANELWRLPPWEGVIDVNVYLLWNREQKLTQAESIFLERFQQMLMTTDPAERF
>NC_021505.1|WP_016498797.1|1953291_1954602_-|MHS-family-MFS-transporter
MKSNTPTPRRAAAAAFIGTTIEFYDFYIYAFAAALVLGQLFFPSENPMLSTMAAFGSFAVGFIARPFAGMVFGHLGDRLGRKKMLLVTIVLMGVATTCIGLLPTYAQAGIWAPIGLIFLRLLQGISVGGEWGGAVLMASEHAPKGRKVFFASFAQWGSPAGLLLALIAFRFITAMETEDLMSWGWRIPFLMSGLLMIVGLLIRFGVPESPEFAEVKDSDQTSDNPVREVLRNHWRNIVFAALAVTIGSGGFFFTNTFMITYVTQYQGIAKTTILDCLFVVTILQFLSQPCSAMLAERLGEGRFLKWVAALCMVVPYPMFLLVQTGNVVYMTAGIALAVVLLSALYAVIAGYMAEAFPARVRYSGISIAYQLGSGLTGGLTPMLGTFVAGQFAGQWLPLALFFSVLALMSLAGVLGLSHLRNASARPVALSTSQGIA
>NC_021505.1|WP_016498807.1|1964716_1966399_+|AMP-binding-protein
MSQPSYTRGRQDQALLTQTIGQAFDATVARCADAEALVSRHQGLRYSWRQLAEQVEVHARALMALGVNTGERVGIWSPNCAQWCILQLASAKVGAILVNINPAYRVGELEYVLRQSGCRWLVCADAFKTSDYHAMVQELVPELACASPGKLVSERLPDLRGVISLAANPPAGFLRWHALAEKAGQTTLEAFTARQQGLQFDQPVNIQYTSGTTGAPKGATLSHYNILNNGFMVGESLGLTACDRMVIPVPLYHCFGMVMANLGCITHGSTMIYPNDAFDAELTLRAVAEERASILYGVPTMFIAMLDHPSRAQMDLSTLRSGIMAGATCPIEVMRRVIDQMHMAEVQIAYGMTETSPVSLQTGPDDDLELRVTTVGRTQPQLENKLVDADGCIVVRGEIGELCTRGYSVMLGYWDNPQATADAIDPAGWMHSGDLAVMDEQGYVRIVGRNKDMIIRGGENIYPRELEEFFYTHPAVADAQVIGIPCSRYGEEIVAWIKLHPGHSATVEELQGWCKARIAHFKVPRHIRFVDEYPMTVTGKVQKFRMREISVAEISAVSAG
>NC_021505.1|WP_016498808.1|1966598_1967459_-|RHS-repeat-associated-core-domain-containing-protein
MAPSTPHTQSPQPVCFTPYGHSGAIGDAAIATGFNGVPFDIYANCYHLGQGYRAFFPGLMRFSSADSLSPFGVGGLNAYAYCKGDPVNYGDPQGTAGVPIGRTGNTPRSAVTARGQFGIGQSSREVKSRRNELRLERMIKQAQETHEQAQAQGVNLALDLLEHEEDLFKRVNQHLGVGVLHRAADKNFRVQERLSTAATRAYTDHMKDILKGQARHYADDGILNIAQSTYLSDLDRSLINAYAPFTENLSGKYSGGYEWDLRLLMAQWKIREAEKFLSGRHSHFSV
>NC_021505.1|WP_115283702.1|1967874_1968066_-|hypothetical-protein
MVDMLQDAGVVDSGPGTLLAHLDRDKCEFALMRLEARYSVRLRRDYLSVAEIADELYKALDGR
>NC_021505.1|WP_016498810.1|1968209_1968371_-|hypothetical-protein
MNIPIPPETPDPNIDDPSLPPPVPEEDPDELPIKPTMPPTVGDPPTQEPPVKA
>NC_021505.1|WP_016498811.1|1968510_1970529_+|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase
MSRNEPFESVPTANDHPDQAISLSQALLAPRIVIEDTEPALEAGTFAAKAISGQPVAVSSKVYSDGHDRLAVMLNWRQANSRRWHCVPMQSAGNDLWLAEFTPTELGPHLFSIEAWVDPFATYSHDLEKKYNAGVEVKLELEEGRLMLGKGTELCSGALRDELEALQQRLAELDTDGQVALLLGPDVAHLISEAGHRSYLARSRELPVDVDRPAAQFASWYELFPRSITDDPQRHGTFNDVHQRLPMIRDMGFDVLYFPPIHPIGTQHRKGRNNALKAEPGDPGSPYAIGSAEGGHDAIHPQLGTREDFRRLVAAAAEHGLEIALDFAIQCSQDHPWLKEHPGWFSWRPDGTIRYAENPPKKYQDIVNVDFYAPDAVPSLWLALRDVVLGWVEEGVKTFRVDNPHTKPLPFWQWMIADVRARYPDVIFLAEAFTKPAMMARLGKVGYAQSYTYFTWRNTKQELREFYEQLNQPPWSQCYRPNFFVNTPDINPFFLHTSGRAGFLIRAALATMGSGLWGMYSGFELCESAPLPGKEEYLDSEKYQIRPRDFTQPGNIIAEIAQLNRIRRQNRALQTHLGVAFFNCWNDNILYFAKRTPERDNYILVAISLDPHNAQEAHFELPLWELGLDDNAETHGEDLMNGHRWTWHGKTQWMRIEPWHQPFGIWRIEKAR
>NC_021505.1|WP_016498812.1|1970689_1974007_+|maltose-alpha-D-glucosyltransferase
MAKRSRPAAFIDDPLWYKDAVIYQLHIKSFFDANNDGIGDFAGLISKLDYIAELGVNTLWLLPFYPSPRRDDGYDIAEYKAVHPDYGSLADARRFIAEAHKRGLRVITELVINHTSDQHPWFQRARHAKRGSKARDFYVWSDDEQKYDGTRIIFLDTEKSNWTWDPVAGQYFWHRFYSHQPDLNFDNPQVLNAVIKVMRFWLDLGVDGLRLDAIPYLIERDGTNNENLPETHTVLKAIRAEIDANYPDRMLLAEANQWPEDTRPYFGEGEGDECHMAFHFPLMPRMYMALAMEDRFPITDILRQTPEIPANCQWAIFLRNHDELTLEMVTDRERDYLWNYYAEDRRARINLGIRRRLAPLLQRDRRRIELLTSLLLSMPGTPTLYYGDELGMGDNIYLGDRDGVRTPMQWSPDRNGGFSRADPQRLVLPPIMDPLYGYQTVNVEAQSHDPHSLLNWTRRMLAVRKQQKAFGRGTLRTLTPSNRRILAYIREYTDADGHTEVILCVANVSRAAQAAELELSQYADKVPVEMLGGSAFPPIGQLPFLLTLPPYAFYWFLLAAHDRMPSWHIQATEGLPELTTLVLRKRMEELLEAPARDTLQTTILPQYLPKRRWFAGKEGPIDEVRLRYGVRFATATTPVLLSEIEVLSGGTANHYQLPFGLLPEDQINTALPQQLALSRVRRAHQVGLITDAFVLEPFIRAVLHACQDGLRLPCGSGAGELRFECTDLLAALGLNDESAVRYLSAEQSNSSVVIGDRVVLKLIRRVNPGIHPELEMSAYLTAAGFANISPLLAWVSRVDEQNAPHLLMIAQGYLSNQGDAWAWTQNTLERAIRDQMAPPSRDAEAHTDALLELTGFAALLGQRLGEMHLLLAAPTDDEAFRPRPSDADDSQRWGTQISAELNHALDLLAQHRDALDPDSQALVDDLQQQRDGLAQHITSLAEQAEGGLLMRVHGDLHLGQVLVVQGDAYLIDFEGEPSRPLQERRAKHSPYKDVSGVLRSFDYAAAMILRSASAVDLSGPAQQARQRVARQYLHQSRHAFVEAYGLATAAMPHAWQQAEGERAALELFCLEKAAYEITYEAENRPSWLAVPLHGLHGLISTWGES
>NC_021505.1|WP_016498813.1|1974007_1976218_+|1,4-alpha-glucan-branching-protein-GlgB
MNATTRENGGLRQRDLDALARAEHADPFAVLGPHGDGQGGVFIRAFLPNALSARVLARHDGRVLAEMVQSAVPGLFTAHLDDAQAYLLQIGWAGGEQVTEDPYSFGPQLGDMDLHLFAEGNHRDLSGRFGAQPIQVEGVDGVCFSVWAPNARRVSVVGDFNNWDGRRHPMRLRHSAGVWELFVPRLGVGETYKYEVLGKDGILPLKADPLARATELPPSTASKVAGELSHAWQDQDWMAQRAQRHAYSAPLSIYELHPGSWRCELDEAGEVGRYYNWRELAERLVPYVQELGFTHIELLPIMEHPFGGSWGYQPLSMFAPTSRYGSAEDFAAFIDACHQGGIGVLLDWVPAHFPTDEHGLARFDGTALYEYDNPLEGYHQDWNTLIYNLGRNEVRGFMMASALHWLKHFHIDGLRVDAVASMLYRDYSRKAGEWVPNRHGGRENLEAIDFIRHLNGVAAHEAPGALIIAEESTAWPGVSQPTQQGGLGFAYKWNMGWMHDTLHYIQNDPVHRNHHHNEMSFGLIYAYSEHFILPISHDEVVHGKHSLIDKMPGDRWQKFANLRAYLTFMWAHPGKKLLFMGCEFGQWREWNHDSELDWYLLQYPEHQGVQRLVGDLNRLYREEPALHEQDCQPQGFQWLIGDDAQNSVYAWLRWSSSGEPVLVVANFTPVPREGYRIGVPFGERWQELLNSDAELYAGSNVGNLGAVASEALASHGQPLSLALNLPPLGVLIMKPA
>NC_021505.1|WP_016498814.1|1976320_1977397_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MKSTSNPLRFDSIFYAVSTSLLLATPVETFAYELQGDPTSPGFLQQPAMPQMSLDPVSASSLSIGTLSAFSQTMSARHGQTAPDLIASQWAQFFPTTSRSGTQPPDQLEAPSQQLTIGPDLFVRETAAGTVHRAGVFVGHNNLQSSFNGIRPLLGDKQRNAVNLSGESLGVYWSMTHEQGWHLDAVAMGSRIDVMGRGENGQRLDESGHAMTFSVEGGYPIRLGGNWVIEPQAQLINQQFFPGNQVQEETLQAFDSQPSWSGRVGAKLSGRYDVRGMPIEPYVRTNVWYDFSNPDEVKLDQVDKISSSRYSTTVELGLGLVARVTPSVALFVSADYSSDVDDNDLNGLIGSLGVRMRW
>NC_021505.1|WP_016498815.1|1977716_1978511_-|endonuclease/exonuclease/phosphatase-family-protein
MNPEAGSTGFASVNQAAAVKRLRVLTVNTHKGFTAFNRRFILPELREAVRSTQADIVFLQEVLGSHDRHAARYPGWPQTSQYEFLADSMWSDFAYGRNAVYPDGHHGNALLSKYPIIEHRNLDVSITGPERRGLLHCILDVPGQHQVHAICVHLSLLESHRQKQLQLLRKLLESLPADAPVIIAGDFNDWKSRGNRTLGLQPDLHEAFERHHGHLARTYPARLPLLPLDRIYLRNAESHGPRILGHKPWSHLSDHLPLAVEVRL
>NC_021505.1|WP_041167663.1|1978692_1980846_-|glycogen-debranching-protein-GlgX
MSPRTPKKTRSVAPSRIREGMPFPLGATWDGLGVNFALFSANATKVELCLFDSTGEQELERIELPEYTDEIYHGYLPDAHPGLVYGYRVYGPYEPENGHRFNPNKLLIDPYAKQLVGSLEWSEALFGYTVGHPDGDLSFDERDSAPFVPKCKVIDPAFTWGRDQRVLIPWERTIIYEAHTRGISMRHPAVPEELRGTFAGLANDELLKHIKDLGVSSIELLPIHAFVNDQHLLDKGLNNYWGYNSIAFFAPHPRYLASGKIAEFKEMVAHLHDAGLEVILDVVYNHTAEGNERGPTLSMRGIDNASYYRLMPDDKRYYINDSGTGNTLDLSHPCVLQLVTDSLRYWAGEMHVDGFRFDLATILGRYHDGYSERHGFLVACRQDPMLSQVKLIAEPWDCGPGGYQVGNFAPGWAEWNDRFRDTARAFWKGDEGQLADFAARLTASGDMFNNRGRRPYSSVNFITAHDGFTLRDLVSYNHKHNEDNDENNQDGTDNNLSWNCGAEGPTDDPDINALRMRQMRNYFATLLLAQGTPMIVAGDEFSRTQHGNNNAYCQDSEIGWVNWDLDQEGKELLAFVKRLTRLRLAYPVLRRSRFLVGDYNEAIGVKDVTWLAPDGNEMSVEQWEDPHGRCLGMLIDGRAQVSGIARPGSEATVLLIVNAHHDVVPFKLPTVPEGDYWSCLVDTDRPELRKGQHLQFDSTFEVKGRSMLLMVLQHEEE

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Crispr_ID: NC_021505_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021505_3

2671007-2671104

Orphan

Consensus_repeat	Method
TCCTTTGACGACCTGCCGGACGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021505_3

>merge|NC_021505|3|2671007-2671104|CRISPRCasFinder
TCCTTTGACGACCTGCCGGACGAACAACCGGTAGTAGCTGCCGCGCAGACCGCGCCCGTCGCACAAGGTGGTCTTTCCTTTGACGACCTGCCAGACGA

>NC_021505|3|3|2671007-2671104|CRISPRCasFinder
TCCTTTGACGACCTGCCGGACGA	ACAACCGGTAGTAGCTGCCGCGCAGACCGCGCCCGTCGCACAAGGTGGTCTT
TCCTTTGACGACCTGCCAGACGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_021505.1\|WP_016499428.1\|2676470_2677256_-\|hypothetical-protein	unknown	unknown	unknown
NC_021505.1\|WP_016499421.1\|2669793_2669994_+\|hypothetical-protein	unknown	unknown	unknown
NC_021505.1\|WP_016499419.1\|2668680_2668884_-\|hypothetical-protein	unknown	unknown	unknown
NC_021505.1\|WP_144063131.1\|2670114_2670996_+\|hypothetical-protein	unknown	unknown	unknown
NC_021505.1\|WP_016499414.1\|2662141_2663467_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NC_021505.1\|WP_016499420.1\|2669395_2669797_+\|hypothetical-protein	unknown	unknown	unknown
NC_021505.1\|WP_016499415.1\|2663483_2665484_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NC_021505.1\|WP_049824913.1\|2666241_2667573_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271182
NC_021505.1\|WP_041168014.1\|2681133_2681826_+\|tRNA-(adenine-N(1))-methyltransferase	unknown	unknown	gnl\|CDD\|225258
NC_021505.1\|WP_016499424.1\|2674251_2674503_+\|hypothetical-protein	unknown	unknown	unknown
NC_021505.1\|WP_016499425.1\|2674495_2675056_+\|hypothetical-protein	unknown	unknown	unknown
NC_021505.1\|WP_144063132.1\|2678857_2680240_-\|hypothetical-protein	unknown	unknown	unknown
NC_021505.1\|WP_016499416.1\|2665689_2666070_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100004
NC_021505.1\|WP_041167698.1\|2677284_2677677_+\|hypothetical-protein	unknown	unknown	unknown
NC_021505.1\|WP_016499433.1\|2680636_2680912_-\|AlpA-family-phage-regulatory-protein	unknown	unknown	gnl\|CDD\|225848
NC_021505.1\|WP_016499418.1\|2667976_2668528_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NC_021505.1\|WP_016499426.1\|2675048_2676038_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235316
NC_021505.1\|WP_016499413.1\|2661533_2661800_-\|hypothetical-protein	unknown	unknown	unknown
NC_021505.1\|WP_016499430.1\|2677689_2678721_-\|hypothetical-protein	unknown	unknown	unknown
NC_021505.1\|WP_016499435.1\|2681827_2682088_-\|DUF2790-domain-containing-protein	unknown	unknown	gnl\|CDD\|371321

Protein	Function_ID	Function_description	E-value
NC_021505.1\|WP_041168014.1\|2681133_2681826_+\|tRNA-(adenine-N(1))-methyltransferase	gnl\|CDD\|225258	COG2384, COG2384, Predicted SAM-dependent methyltransferase [General function prediction only].	1.11328e-78
NC_021505.1\|WP_016499426.1\|2675048_2676038_+\|hypothetical-protein	gnl\|CDD\|235316	PRK04863, mukB, chromosome partition protein MukB.	0.00725626
NC_021505.1\|WP_016499416.1\|2665689_2666070_-\|RidA-family-protein	gnl\|CDD\|100004	cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	9.0589e-27
NC_021505.1\|WP_016499414.1\|2662141_2663467_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	3.55562e-165
NC_021505.1\|WP_016499418.1\|2667976_2668528_-\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	8.87489e-47
NC_021505.1\|WP_016499433.1\|2680636_2680912_-\|AlpA-family-phage-regulatory-protein	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	9.1005e-11
NC_021505.1\|WP_016499415.1\|2663483_2665484_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	9.58706e-99
NC_021505.1\|WP_016499435.1\|2681827_2682088_-\|DUF2790-domain-containing-protein	gnl\|CDD\|371321	pfam10976, DUF2790, Protein of unknown function (DUF2790). This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.	1.72219e-24
NC_021505.1\|WP_049824913.1\|2666241_2667573_+\|site-specific-integrase	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.00363e-47

>NC_021505.1|WP_144063131.1|2670114_2670996_+|hypothetical-protein
MAQGRPGSSAQTLGQGGAQAVQMYQQQQHQRGLADYRNRLAQMQQDQLAMQQQAAQAKAQREQEYRARLADPNFLAGLSPTARMMAQLGVDPNALIRAQSADNLAQHRQAQLAQQQGQFDARQANHGSGGQPSGPRTPAPRPYIDQPIGNNQMQRYKFDPSIGDYAPWGEPFNQYSPGRKAKGGADGMVGAILNPEQPDAEAVPDASSLPGTGSMQSYMPRPQGPVGVLPMSAAGGNASQKPTTRVPNTRKPAVSGDLAAAKSAISAGKSRQAVVNRLMQAGYTAEQIKGAGI
>NC_021505.1|WP_016499421.1|2669793_2669994_+|hypothetical-protein
MNFADQILAADPNAASPFADDPELAAAVEADFQALLAQVLAAPPMPAVQWPANVVSLAAYKARQPE
>NC_021505.1|WP_016499420.1|2669395_2669797_+|hypothetical-protein
MKTNSAAVTLSQLADLVATDRSALCRNPRLPEGAPVHTGAAHRPEHAFALDALAAFAYDQTAHLTEAECRLRLALIGRTEPSRTSKRTCAKPGPFRLLDNGDGTHEMVPILEPDEFTLTEQRGLRAAVMEQSK
>NC_021505.1|WP_016499419.1|2668680_2668884_-|hypothetical-protein
MDKATVTADTLELILLNQQALRAGIEELSLWIKQRGSTATCDNVMIALQTMDANAEGIEQGIRVLRG
>NC_021505.1|WP_016499418.1|2667976_2668528_-|recombinase-family-protein
MAIIGYVRVSTGEQSVAAQKHSMRAHAIDKWFEDSGVSGAVPALERPGCAAMLAYAREGDTVVVAAVDRLGRDTIDVLSTVEALQAKAVSVISVREGFDLSTEIGRFMLAMLAAVAKLERSNIKARQMAGIEKARSEGKALGRKATVDPVEVSTWRRENSASIAQTAEQFGISTATVKRCCRV
>NC_021505.1|WP_049824913.1|2666241_2667573_+|site-specific-integrase
MPQRIPPVSDQAQPPKKRASSDDAARDINEPGKYPEGSVPGMYLHVKKASKVWSLKYRLHGVEGTYTIGGFPDIRHDRACELAQEARTWVAEGHKPKDMRDARIAAELAQKGETFEKVCSEWLSSRGDLAHKTLLNYRSTLDLHVLPALGQLPVHLVQYRHVKKVLVDLGQHPAAANHALVTIRAVLDYAVEAELIDDNVVARRGKGLIRKRKTVHHAAIERPDDLKEFLRRLEQQAPAGSPTTWALWMLVLLPVRPSELAKMRWQDIDMGEAEWRYTVPKTGKQHVVPLPDRAVSMLAMIREHRAQAAAATVPSPFGGIAKPEVPTGWVFASTRGAGKSICSTTMLNGIRALGYEKGELTSHGFRSTFRSLAHEKLGIEAIVLELCLGHRMPGVLGDTYARAHLLPQRREAMEKWAAYVEDLWFEVVHGVSRAQAEAALTGM
>NC_021505.1|WP_016499416.1|2665689_2666070_-|RidA-family-protein
MAHADIIYTPDPDAESISSDVAEFNGVLVTTQIPTHADGSLELGGIVEQSECTLQALKVALEKAGSGMDRVLHLTIYLTDMADRAAFNEVYQRFFSKPWPVRAAVGVASLAFEGMRVEVTAMAAKR
>NC_021505.1|WP_016499415.1|2663483_2665484_-|U32-family-peptidase
MSLPKNHLELLSPARDVAIAREAILHGADAIYIGGPSFGARHNACNEVGEIAELVEFARRYHARVFTTINTILHDNELEPARKLIHQLYDAGVDALIVQDLGVMELDIPPIELHASTQTDIRTLERAKFLDQAGFSQLVLARELNLQQIRAIAAETDAAIEFFIHGALCVAFSGQCNISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVAFEKHLLSMKDNNQTANLADLVDAGVRSFKIEGRYKDMGYVKNITAHYRKELDAILEGRPEYARASSGRTEHFFLPDPDKTFHRGSTDYFVTDRKVDIGAFDSPTFTGLPVGVVEKVGKRDMQVVTEVPLTNGDGLNVLVKREVVGFRANIAEPRGEFEEDGQKRYRYRVEPNEMPEGLHKLRPNHPLSRNLDHNWQQALQRTSSERRVGVEWHAVLREQRLMLTLSSEEGVSVQVALDGPFGEANKPQQALDQLHDLLGQLGTTMYHASSIELDAPQAYFIPNSQLKALRREAIEALTEARIKAHPRGGRKAETTPPPVYPESHLSFLANVYNQKARDFYHRHGVQLIDAAYEAHEEHGEVPVMITKHCLRFSFNLCPKQAKGVTGVRTKVAPMQLIQGDEVLTLKFDCKPCEMHVVGKMKSHIIDLPTPGSAVAQVVGHISPEDLLKTIVRAPH
>NC_021505.1|WP_016499414.1|2662141_2663467_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MLQPAAQRRLLIVDPCDDCHQLLPGLSSAGWDVDSCVLGAALDHPCDVGLLRLQASHLRHPDAVKDMIKRSNTEWIAVLSAEQLRMPAVGDFVCEWFFDFHTLPFDVSRVQVTLGRAFGMARLRGKGAAKVDDATHELLGESRPIRELRKLLGKLAPTESPVLIRGESGTGKELVARTLHRQSQRSDQPFVAINCGAIPEHLIQSELFGHEKGAFTGAHQRKTGRIEAAHGGTLFLDEIGDLPLELQANLLRFLQEKHIERVGGSQPIPVDARVLAATHVDLERAIEQGRFREDLYYRLNVLQVVTAPLRDRHGDLSMLASHFAHFYSLETGRRPRSFSDHALAAMGRHDWPGNVRELANRVRRGLVLAEGRQIEAQDLGLQTLDPGQQPLGTLEEYKQRAERQALCDVLNRHSDNMSVAAKVLGISRPTFYRLLHKHQIR
>NC_021505.1|WP_016499413.1|2661533_2661800_-|hypothetical-protein
MNAPLRVNEALLIADHAFEPFQCVAWDAPNGTGELSLAVIDRTNTRIGSKRVSSSTYSDPAQWASLIEEVRAELCEKGYDLQPWSMPK
>NC_021505.1|WP_016499424.1|2674251_2674503_+|hypothetical-protein
MTTEIEQAEAAVRQAEGEYRELERAAAMLRDRLPAAQQELESARAQLRRLKQEDGTAATLCQQREIDRLTAAIAAANEDRSHA
>NC_021505.1|WP_016499425.1|2674495_2675056_+|hypothetical-protein
MHDIEHLNNLRQSAEWHNVDTARAKLTTTVDGEYIITFDRPVVDLGPWTESAPERTVTARSAEGAEIALLHGLVKLHVCERRRVRTGVVVGWTCADIARKPLTAGEIAAFKARTNPARKIEKLQEELTEALARQAARAAAAQGAADLAERYGLAAAAPVQTSKPTGTVSGRPSKAKRASRQEVNHE
>NC_021505.1|WP_016499426.1|2675048_2676038_+|hypothetical-protein
MSDSIQVEPIDGPDEDVPVDGIAAVLTDSVGIPNDAGPDTPVPEADATAVEEYDAHAQQRDEHLSDDGQEDEQGPQGKQQQRVPLGALQEERRARQAAQEQARQLQAQLAQLQAQQDQFRAMQQQLAAQQQAQQIPAFEDDPEGHVAAKFQQIEQHIVGQQQAAVQRAQFEQAAAQVGQELQEMAPQVVAIEQEFAATHSDYHDAYAHLNAEVDRRIAQQHPHASPAEHAFAKQIALLAFVKDSQAKGLNPAQLIYGKAQELGYQAQHRAPAPARRQAPTSLSTLAADGKAPDQRGHLSASQVSNMSNEDFDALWSQMAADARTPGFGL
>NC_021505.1|WP_016499428.1|2676470_2677256_-|hypothetical-protein
MAGLWEPVGGVYWKVPPDDVMPFLHWATVLVFAAVAVVAVAVRINRKRSEPEWHLRQHMVEIGAAATLTYLVGMTVLTWGRIGSLGEMPLNEVGDFLAGAFGPVAFLWLVLGFLQQGYELRMQATELKNSVEQHKEMVKTTKQERDRALKALFTFDVGSFIHSPTERWVRRKIRARNEGKKALNVVLQSDPHVNDGEPLELGDMPEGHQVTVAFDFPLLEGVTTGKFWIEYDDAVGGRRKEAFWYSTSEFDLSVVRAKADD
>NC_021505.1|WP_041167698.1|2677284_2677677_+|hypothetical-protein
MASDDSGVDLLRELLQAVTVVLNFLGHPLEHAAMTPEQIRAFIEREYSHLVAEPRHNPDGWAFFLGAPRRGADSNRIFRAVQHSGGGPTRLKLAVTSRLKGEPVEIDFTGSEAALKELIDRELQRYSDGL
>NC_021505.1|WP_016499430.1|2677689_2678721_-|hypothetical-protein
MISNEDQVRATVEKLKQIADVLKSDIGPVQLTLELHERFENFRHELEIFESQLTSSHLLDLMGRANYVASRGEHLVSVTRAAKLNVRQELLDELLKQAARLSAMISVPNENGMISLRDLEEAEKDLRKQINIEQGRLTEIEIKINTLHDTASNEIQKISLAYEETRAVLDEKKAQIDELVGHASAQVVAGDYAKSSEVEKRMADMLRWGSIACMAFVVAILGVTAFKSLDAEIHWENFVIRITLALLLSVPAAYLARESAKHREQQYQHLQTSLDLKAITPFLASLPPEEQHKIKIDIASKIFAGRDFSRVGADPFPINAHELVMEIIKKLELPKGASRGPGQ
>NC_021505.1|WP_144063132.1|2678857_2680240_-|hypothetical-protein
MNIDTESREILRYISQDFVMLTANGEQRAYHIESGDIFGLKGFIKYCSKHYGEITIIQGDGKEERTASGAIWWSWEDPLQRVARRVVMEPTSKPEHEGNPEVFNLWYERKKTMCPPDLYATPESIEIFVKHLLYLADDDEVVVMYFLNWLAQLYQTPETKIPSAFLFYSKLGGVGKSTMFKLLAKVFGPCMVGSCSGRALTKSFDDVTEHKRLLMVNEMARSEKADGYENFKNMISEEQVSFEGKGRAAKDIKNITHYIVTTNNKDALPLMQGDRRIAVFMCNAAPKPDSYYVKLMDWMENEGPALVAGVLAQWRFPADWNPYAPVPQTAAARAMQDAAQGELYGVVKELIDQRREPFDKDIIVVGEAATKLNNMGLALTKPANITSLGKVLKVLCGEPEPLRILKRETGKSMPLNVYLIRNAEQWKAASAEQRMNHLDTGVHLFPVQDQSAESEVANHE
>NC_021505.1|WP_016499433.1|2680636_2680912_-|AlpA-family-phage-regulatory-protein
MGNPRIEVPAPIADALVHPTPLCQALGISRMTLDRWVEAGHFPAPIVIGQMRGSGKVSRTAFLKSEIDAWIEARKAERDAAKKLRTETLPA
>NC_021505.1|WP_041168014.1|2681133_2681826_+|tRNA-(adenine-N(1))-methyltransferase
MNEQTLSRRLERVAAHVPQGARLADIGSDHGYLPVALMLRGVIEAGVAGEVAQTPFASAQRNVRRNGLQDRLTVRLADGLAAVEPQDRISVVSICGMGGDTMCDILEAGKQRLGGVTRLVLQPNGGERELRQWLAGNGYQIVSEELLRENRFDYEIIVAEPGSVVYSVEQLYFGPVLMQEKSEAFLVKWRRMLRQKQQTLANFQRARDAVPQAKIDDFNQQVGWITQVLA
>NC_021505.1|WP_016499435.1|2681827_2682088_-|DUF2790-domain-containing-protein
MKRSIAVLAVAATLASFGAFADAGSTQPTSSNYEYGMPLDVAKVISITPASNAADCQVGTAHMVYVDHQGQKREIDYREMGNCSQQ

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Crispr_ID: NC_021505_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021505_4

3883434-3883567

Orphan

Consensus_repeat	Method
CCGCACTTGCCTTCACCACACTTGCCCTC	PILER-CR

2 spacers

The CRISPR arrays of NC_021505_4

>merge|NC_021505|4|3883434-3883567|PILER-CR
CCGCACTTGCCTTCACCACACTTGCCCTCAGCCCCGGCCTTGGCGCCGGCGCCGCATTTACCTTCACCGCACTTGCCTTCGCTTTGGGAAGCCTTGCCGCTCCCCCCGCACTTGCCTTCACCACACTTGCCCTC

>NC_021505|4|1|3883434-3883567|PILER-CR
CCGCACTTGCCTTCACCACACTTGCCCTC	AGCCCCGGCCTTGGCGCCGGCG
CCGCATTTACCTTCACCGCACTTGCCTTC	GCTTTGGGAAGCCTTGCCGCTCCCCCCG
CACTTGCCTTCACCACACTTGCCCTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_021505.1\|WP_041168090.1\|3877356_3877872_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239310
NC_021505.1\|WP_041168094.1\|3897456_3898353_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176165
NC_021505.1\|WP_070100151.1\|3902100_3902787_+\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NC_021505.1\|WP_016500478.1\|3899413_3900202_+\|YqcI/YcgG-family-protein	unknown	unknown	gnl\|CDD\|370174
NC_021505.1\|WP_016500463.1\|3877882_3878158_-\|DUF2790-domain-containing-protein	unknown	unknown	gnl\|CDD\|371321
NC_021505.1\|WP_162838442.1\|3878419_3878593_-\|hypothetical-protein	unknown	unknown	unknown
NC_021505.1\|WP_016500464.1\|3878863_3879604_+\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NC_021505.1\|WP_016500477.1\|3898333_3899254_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NC_021505.1\|WP_041167787.1\|3876447_3877296_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|183586
NC_021505.1\|WP_016500470.1\|3883873_3884434_-\|DUF4174-domain-containing-protein	unknown	unknown	gnl\|CDD\|379363
NC_021505.1\|WP_016500474.1\|3893753_3896114_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NC_021505.1\|WP_016500480.1\|3900870_3901953_+\|hypothetical-protein	unknown	unknown	unknown
NC_021505.1\|WP_041167786.1\|3876001_3876451_+\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|237270
NC_021505.1\|WP_016500479.1\|3900204_3900831_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NC_021505.1\|WP_016500471.1\|3884661_3889155_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|339245
NC_021505.1\|WP_016500468.1\|3882299_3883133_-\|DUF692-domain-containing-protein	unknown	unknown	gnl\|CDD\|235447
NC_021505.1\|WP_016500465.1\|3879600_3880887_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_021505.1\|WP_016500466.1\|3881056_3881578_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NC_021505.1\|WP_041167789.1\|3896148_3897339_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NC_021505.1\|WP_041168093.1\|3881611_3882307_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225760

Protein	Function_ID	Function_description	E-value
NC_021505.1\|WP_041168090.1\|3877356_3877872_-\|thioredoxin-family-protein	gnl\|CDD\|239310	cd03012, TlpA_like_DipZ_like, TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.	8.40487e-70
NC_021505.1\|WP_041168094.1\|3897456_3898353_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176165	cd08476, PBP2_CrgA_like_7, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 7. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.28462e-109
NC_021505.1\|WP_070100151.1\|3902100_3902787_+\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	0.000936723
NC_021505.1\|WP_016500478.1\|3899413_3900202_+\|YqcI/YcgG-family-protein	gnl\|CDD\|370174	pfam08892, YqcI_YcgG, YqcI/YcgG family. This family of proteins are functionally uncharacterized. The family include YqcI and YcgG from B. subtilis. The alignment contains a conserved FPC motif at the N-terminus and CPF at the C-terminus.	1.96487e-73
NC_021505.1\|WP_016500463.1\|3877882_3878158_-\|DUF2790-domain-containing-protein	gnl\|CDD\|371321	pfam10976, DUF2790, Protein of unknown function (DUF2790). This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.	1.0438e-23
NC_021505.1\|WP_016500464.1\|3878863_3879604_+\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.47531e-76
NC_021505.1\|WP_016500477.1\|3898333_3899254_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	9.50598e-67
NC_021505.1\|WP_041167787.1\|3876447_3877296_+\|shikimate-dehydrogenase	gnl\|CDD\|183586	PRK12549, PRK12549, shikimate 5-dehydrogenase; Reviewed.	3.46704e-178
NC_021505.1\|WP_016500470.1\|3883873_3884434_-\|DUF4174-domain-containing-protein	gnl\|CDD\|379363	pfam13778, DUF4174, Domain of unknown function (DUF4174). This domain of unknown function is found in a putative tumor suppressor gene and in a ligand for the the urokinase-type plasminogen activator receptor, which plays a role in cellular migration and adhesion.	1.01534e-20
NC_021505.1\|WP_016500474.1\|3893753_3896114_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NC_021505.1\|WP_041167786.1\|3876001_3876451_+\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|237270	PRK13015, PRK13015, 3-dehydroquinate dehydratase; Reviewed.	3.65375e-97
NC_021505.1\|WP_016500479.1\|3900204_3900831_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	6.02785e-21
NC_021505.1\|WP_016500471.1\|3884661_3889155_-\|hypothetical-protein	gnl\|CDD\|339245	pfam14496, NEL, C-terminal novel E3 ligase, LRR-interacting. This NEL or novel E3 ligase domain is found at the C-terminus of bacterial virulence factors. Its sequence is different from those of the eukaryotic HECT and RING-finger E3 ligases, and it subverts the host ubiquitination process. At the N-terminus of the family-members there is a series of LRR repeats, and the NEL domain interacts with the most N-terminal repeat. The key residue for the ligation step is the cysteine, eg found at position 386 in UniProtKB:E7K2H2. The LRR section sequesters this active site until invasion has occurred.	2.35033e-65
NC_021505.1\|WP_016500468.1\|3882299_3883133_-\|DUF692-domain-containing-protein	gnl\|CDD\|235447	PRK05409, PRK05409, hypothetical protein; Provisional.	5.87761e-149
NC_021505.1\|WP_016500465.1\|3879600_3880887_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.75046e-43
NC_021505.1\|WP_016500466.1\|3881056_3881578_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	4.97565e-19
NC_021505.1\|WP_041167789.1\|3896148_3897339_-\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	2.12458e-62
NC_021505.1\|WP_041168093.1\|3881611_3882307_-\|hypothetical-protein	gnl\|CDD\|225760	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown].	8.40205e-58

>NC_021505.1|WP_016500468.1|3882299_3883133_-|DUF692-domain-containing-protein
MFPAMLNIGLGLRRGLLPELLAMEAGAVDFLECAPENWIAVGGAYGKGLAQLAERFAVTCHGLSLSLGGSAPLDRHFLEQTRQFLDRYQVRLYSEHLSYCSDDGHLYDLMPIPFTDEAVHHVAARIRQAQEQLERRIAVENISYYAAPYQAMSELDFIRAVLEEADCDLLLDVNNVYVNACNHGYDAQQFLAGLPPARVTGMHVAGHYDEAPDLKVDTHGAAVKEDVWALYASACVRFGVKPTVLERDFNYPPLAELLAETARMRAVQCAAGGQADE
>NC_021505.1|WP_041168093.1|3881611_3882307_-|hypothetical-protein
MNETLRAQQYALARHLRDPQRHAPPPGVEARRLKVYRELFYGAIEGLLAGSFPVMRQVLGEQRWHARVRDFYASYRCQTPLFTEIAETFVDYLQRVALDAPWQLELAHYEWVEAQLYLSDAEDPAHDPGGDLLAGEPLLSCVARVLAYRWPVESIGVDYQPTAAPASPSLLLVYRDARLQVRFARLAPMAYRLLMEQGTGRERLQALGGDVQQGLVLLEALREQGVIVGTV
>NC_021505.1|WP_016500466.1|3881056_3881578_+|DoxX-family-protein
MKAFTLPSDWKLSTALAGLTTVDRLGSWSADVPLRVFLAWEFFESGLEKFNGSNWFADLQSSFPFPFNLLPAELNWQLSMWAELVLPLLLLLGLGTRLASLGLMVVTVVAIAAVHWPAHWSGLAELAQGYAITDQGFGNYKLPLIYLVALLPLLLKGAGRLSLDHWLGMRFGR
>NC_021505.1|WP_016500465.1|3879600_3880887_+|HAMP-domain-containing-histidine-kinase
MKWPRTLASRLAMIFFTGLVLAYGLSFGLQAYERYISSRSMMLSNLEQDVATSVAILDRLPAAERAAWLPRLERRTYRYRLDQGLAGEAMASSDPPMAAASIVKAIGSDYRLTFQEIPGPNAHFQAHLNLADGAPLTIDVTPAPVPVARWLPVVLLIQLAVLMLCTWLAVHLAIGPLTRLAQAVDNLDPDQPGVQLDESGPREVRYAAVAFNALQARIAAHLKERMQLLAAISHDLQTPITRMKLRVEVMDEGVEKDKFGSDLDEMEHLVREGVAYARSMDSSTEATCRVNLDAFLDSLVFDYQDSGAQVERHGSSGALLETRPHALRRVLVNLVDNALKFAGAAELQVSREGSTTIIRVLDNGPGIPGDELDEVLKPFYRVEGSRNRSTGGTGLGLAIAHQLIQAMGGRLTLSNREQGGLCAQIELS
>NC_021505.1|WP_016500464.1|3878863_3879604_+|response-regulator
MEHVDHILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSVDLIVLDIMMPGDDGLLLCRELRAGKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRRTRMLPPNLTISESSRLLRFGQWRLDTTARHLLDNDGTLVALSGAEYRLLRVFLDHPQRVLSREQLLNLTQGREADLFDRSIDLLVSRLRQRLGDDAREPSCIKTVRSEGYVFSLPVQLLESPS
>NC_021505.1|WP_162838442.1|3878419_3878593_-|hypothetical-protein
MSQTYPSPAHRAHDRLCEQIEAFLQQGGHIQQVARGVSGSPDGVSKLQWHKARTAKP
>NC_021505.1|WP_016500463.1|3877882_3878158_-|DUF2790-domain-containing-protein
MNLKTFASASLFAMLSFGAIAAQAAAMPTQNTGAMQYHYGEHLDVKKVLSVQDDQSNACGLVNTRMDYLDSHGRPQSVEYRSYATGGCHDN
>NC_021505.1|WP_041168090.1|3877356_3877872_-|thioredoxin-family-protein
MLKVGSIALALSGLGLAGHLMARDSYGAMPSLSGASQWINSPPLDGPALKGKVVLVDFWTWDCINCQRSLPHVNDWARRYADQGLVVVGVHTPEYDYEHDVGTLRNKVAGLGVGYPVAVDNDHKVWNAWGNQFWPAHYFVDRKGQVRHVHFGEGDYGGQEQVIKALLDERG
>NC_021505.1|WP_041167787.1|3876447_3877296_+|shikimate-dehydrogenase
MSQHAILAGLIGRGIQLSRTPALHEHEGDAQALRYLYRLIDADQLQLEDSALPGLLDAAQHTGFTGLNITYPFKQSILPLLDELSDEARGIGAVNTVVLKDGKRVGHNTDCLGFAEGLRRGLPDVARRQVVQMGAGGAGSAVAHALLGEGVEQLVLFEVDAARAQALVDNLNGHFGAGRAVLGTDLAAAVAEADGLVNTTPVGMAKLPGTPLPVELLHAGLWVAEIIYFPLETELLRAARALGCRTLDGSNMAVFQAVKAFELFSGRQADAARMQAHFASFT
>NC_021505.1|WP_041167786.1|3876001_3876451_+|type-II-3-dehydroquinate-dehydratase
MKPLILVLNGPNLNMLGTREPAQYGRETLADLAQSCADTAHANGLEIEFRQTNHEGELIDWIHAARGRCAGIVINPGAWTHTSVAIRDALVASEVPVIEVHLSNVHKREPFRHLSFVSSIAVGVICGLGSHGYRMALSHFAELFQERTA
>NC_021505.1|WP_016500470.1|3883873_3884434_-|DUF4174-domain-containing-protein
MLVRSLTLATLLAVAGPLFAADSDAPLAKELGKARPLVVIAPSSADPTLRGLNKALEDPATQAAFKERNLVLYSVANMMGKREDKNLEQQTTMALIRELKLGASKGTKVILVGKDGERHMLKDDDTGEAIDPQVILKAVDELPASEKAVAAPEPVAAAPQAKDKDSKPAKPAKPAKPAAPPKPLED
>NC_021505.1|WP_016500471.1|3884661_3889155_-|hypothetical-protein
MDTTVPSDAQAAIDAFQDGIIGRRLPPWLRHAPAEQLPEIGKALANSLRCCEHVKAVLRGIEGLDSFVASALGKALDERYGLGRNPYLLRFLEGRREPVINSQPVGAHLTDVVYEEKPLLEVALRNFTAAQAQEGGQPRGNRLLLPRHGTVKPPTSIEFAGLCRELDLGERYQRHLDAVLSPTGSSERLVSQLVDATRYTMLVDAYKARHEGTLDASELNVMVAVCEKGELPRLAGDLVQARQLKLLGCRIEQVTVFVVVEQGVLFNTTRRVLLYVPGDPFSPWRAFESIDKLNRELGRRLRDKTYQRFFSRFVLRRDSQAFFAQVAERFDDLPGWAFRDLEPHLQAYPQPLFISLAQARIHQIKEDAAMIAVPVARLDREVQRQHDLRLEAEGWALLNLASFFLPGLGLALLAVTACELLGEVYHGAEAWQEGDSQEALDHLTHVATDLAVLATTVAGVGVARRVWARSAQVDAMVPARLEDGTEKLWQHDLTPFQSQAPVAASSRDALGIRRQDGQAWVEMDGHHYRVAEAGDDQWQLYPVDGHGPLLRHNGAGAWRLWSEQPARWTDKYRMFRRLGEPFNGLNDEQIDQVLLFHGLDGDDVRGLHVHAQAPSPGMIDSVERVRLDQRIRSMIGRLRNGEPVEDATVLDHARHLPGASGLTDQALAALAWTQRRTLLQHLFEALQPSDTPGSAALRRVFPGLSARTAQALVQAASSVDRMRLQSSARVALGLAEAARGSVLATRQARVFEALYLDTPQHADLARVTLGLLRYVPGGEQGVCWRLYEGCLGGPILAKTEQGQRAFDLVHLNGTFQLHGSQGTALGEAGELFEVIAPAYTEAQREAMGIGDPFAHNLRVIVAREAARHRDEISRLLGAVRPGAVRGPMRLADGRIGYPLGGGGVGGFASRGRALRATLRDLFPWLSDEQVETFADDARRSGHQIEQVLADLRNEFAVLRITLNTWVARGQGDVREDREALRQTLFNCWRRSVGVGELQINAQENLHVMFCNFRSSGLPNIPAQVSFRGVTSLSLLHLDLLEVPSSLLLAFPNLQTLDLGGNLLTRLPQPLLQITQLRHLSLTNNRIVLNTAQTATLASCTSLQSLDLSHNPLGRRFTLAGLAELRWLSLRDTQISQFPLGVFDNAQLVSVDLRDNRIRHIPEGFYQLPLWHRRRFRLNANPLGEAQTLRLQASLSSDDPALDEEQVLLRLQHAREVWGDSVAPEHRGLMLAAWDSLDSGQDAERFFRVLRQLLLSEDFRVNPRALGNRVMGVLQAMAITPELRQNLLSVANDEWGCQDGATWCLSNLELNLLVWQVEHAAKGGSERALLDLGRRLWRQDAVDMFATRWALQHGRTLEGSEVGLAFRVGLRERLDLPLQVGEMSFLAISGVLDADLAEAEAAVRDAETPEEIARSMVDREFWQAHLERSHPERFAAVDLPFRRQLETVLDDEALTEGAMIDQADAIRDAQRAARRGLMLDMTIHAMEVGPKGPAIDVR
>NC_021505.1|WP_016500474.1|3893753_3896114_-|DNA-polymerase-II
MELQQGFVLTRHWHDTPEGTCVEFWLATDQGPRQLRLAPQVSVAFIAQTHEAHARVLLANEPGVELRPLALKDFDQRPVLGLYCRQHRQLMQLEQRLRTAGVEVFEADIRPPERYLMERFITAPVQFTGQPDAQGVLCDAQLKPSPGYRPPLRLVSLDIETSERGELYSIALEGCGQRQVYMLGPANGDAAELDFDLEYCADRAALITRLNQWMARHDPDAIIGWNLVQFDLRLLHEHAKSLQVPLTLGRNGAAMTLRSHAGGGHVFADAPGRLLIDGIEALRSATWSFPSFSLENVAQTLLGEGKAIDTPYQRMDEINRRFVEDKPALAHYNLKDCELVTRILAHTRLLDFLLERASVTGLAVDRSGGSVAAFCHLYIPQMHRLGFVAPSLGSRPDEASPGGFVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLRLPDDAHSVEGFRGGRFSRTQHWLPAIVERVWQGREAAKREGNAPLSQALKIIMNAFYGVLGSSGCRFFDPRLASSITMRGHQIMRQTRSLIEACGYDVIYGDTDSTFVWLKGAHAEEDAARIGRELVAKVNQWWQAHLHETMNLQSALELQFEVHYRRFLMPTIRGTDEGSKKRYAGLVQRADGSQEMVYKGLESVRTDWSPLARQFQQELYGRVFRSEPYRDYVREYVRRTLAGEQDELLVYRKRLRRPLADYQRNVPPHVRAARLADEYNKRLGRPLQYQRGGWISYVITTAGPEPLENLQAPIDYDHYISRQLLPVADAILPFVGDDFVRLTDHQLLLF
>NC_021505.1|WP_041167789.1|3896148_3897339_-|MFS-transporter
MSRTSSPPLLDASSERLPLSGLLALAMTGFIAILSETLPAGLLDQIADGMHISQAMAGQWVTAYALGSLLTAIPLVTLTQGWYRRRALLLAILGFVLFNGLTALSGSNSLTLVLRFFTGAAAGLAWGLIAGHARRMVPAPLQGRAMALAMLGQPIALSLGLPIATWLGAGLGWRATFVLVTLVALLLVVWVLRSVPEYPGHAAGKRPAAMQVLRTPGVLIVLLVILTWILGHNILYTYLVPLLAAAGMAGEIGAVLMVFGLSALAGIGLVGMLVDRHLRKLVLLSLAGFALATLALGQASSWLMYLSIALWGLTYGGAPTLLQTACADAAGEGGDVAQSMLVTVWNSAIALGGIVGGALLVGSGTEAFGGVVLALIAVALLLTWAARRSGFVAGAR
>NC_021505.1|WP_041168094.1|3897456_3898353_+|LysR-family-transcriptional-regulator
MDSLSGFVVFNRVAETRSFVAAGQSLGITASAVGKRVARLESRLGVRLFHRSTRSITLTAEGTMFLERSRRILAEIEATEQELSQASETPRGRLRVSMPQVTRLVMPALAEFMALYPQVELDLDFSDRMVDIVGEGFDVVMRGGQPVDSRLSAKFLGHFQHRLVASPEYLRERGTPLHPRDLAAHTCLHYRFPSNGKLETWPLRQEHPEQAYDIPISMVCNHVETRVCFALNHRGITCLPDFNVGRELANGSLVSVLDDFMERRGSFYLLWPSGRQMPPKLRVFIDFMLERVFNRTGN
>NC_021505.1|WP_016500477.1|3898333_3899254_-|LysR-family-transcriptional-regulator
MSERIQALHALRAFEVASRYGSFTRAAEELALTQGAVSHHIKTLEALFGCDLFERRGPKLSLTEHGRLLSQELKVGFKIIENACALLRQDRYGLRLKAPSTLTMRWLLRALDAFKKADDNCSVQLSSVWMDIDTVDFYSEPYDCAILLASGRFPADIESFKLFDEWLIPVCQPDYMPQPQPALADLAQCEFLHPSPDRRDWRRWLARMGALEISIDQGQVFDTLDQGISAAQQGLGISVVDLVLASADLQAGRLVTPFKHAVATGDGYYMTWLKASPKARQMHKLRDFLLGQVPPLAYKDINYLYG
>NC_021505.1|WP_016500478.1|3899413_3900202_+|YqcI/YcgG-family-protein
MFTGYGNCYRLDALEQAVEHGCNTQHWTFKTIEHFRSILANPDFPCLFGRKAVNGETCHILFARAEQLADDIAQGLADYVGTVAPITPKQRIGSPLVVFLETAADYTLAEQQALAWKVLRGVHARDPHPWPQGMPTDPDDNGWSFCYAGMPLFINMNFPGHQQMKSRNLGHHITFVINPRANFDEVANANTESGKRIRERIRERVHHYNDGVMPDTLGFFGDTDNYEWKQYQLQETGSLNPSRCPFHAHAAHPATPDLLIEN
>NC_021505.1|WP_016500479.1|3900204_3900831_+|LysE-family-translocator
MNTALTFTYALTVLLLIATPGPVVALIVNTAAASGSRKAMFTAVGTNWASLVLIGAAAWIILTSAAIDKAWLSTMSLLGCLFIGYIAVGTLRDALQAPAPEAASEAPKAARGGLLQGFMVGISNPKDIIFFIAFFPQFIQITESFGKSMVVLSLLWVAIDFAVLSLYIFAIGKIASQRSNRVISLASGVALLLIAAGGLLYNLNELAA
>NC_021505.1|WP_016500480.1|3900870_3901953_+|hypothetical-protein
MTATDMSPPPSPLQQDYQRFLLLGSRRAPHTVHVHETGYRSGTINTDALGLRYSHCAGKRFSAAERGGASRINLLVGGSTALGIGASSDEHTVASHLSALTGEVWLSLAGCGLNASQELLMFLTHQHRLSQLGHVVVLSGLNSLAHEALSEVLGSPNNPLHAKAYQAFLNSFSEGLQPAAPPRRPSLWRRIGQALTTPAAQAPVIWPLSPPEKRLARAADSIGRTLRQWDRLLADSHATLTFILQPLLPWCRDTLPAGEQAMLAALEQQPANFDRLLDGAFDSQLHSAFFRRIKSQADPVPCYDMNGMLSSSPVFGADLFIDRLHLNDLGNNALAKVITAKLGLAQEKHAQRKVTPIKLV
>NC_021505.1|WP_070100151.1|3902100_3902787_+|sel1-repeat-family-protein
MRRLPPLLAALMPLAAHALEVRIDPHADLLYRQALPLLEQADNQGDDTSTLRTALGGDPELSRQGQAMAHTLPTAVALLKKSVELGHPVAQYRLALYYMTYLPAAQIPDAACPLLEASLKQGFAAPAPAIATWCRPYNASSEYRAALEAIPSMATVYAPYYPQPTTRLACSRSRPEGLQMLWGRQRDYQAEVYRLLGDLDPPHRLSLLQKAVDINGCMTAQQHLTRHP

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Crispr_ID: NC_021505_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021505_5

4570888-4570967

Orphan

Consensus_repeat	Method
TTCAGGCCTGTGGTGATCCTGTGGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021505_5

>merge|NC_021505|5|4570888-4570967|CRISPRCasFinder
TTCAGGCCTGTGGTGATCCTGTGGGAAGCCAACTTCCACAGGGGCCCCACCTCTTTCAGGCCTGTGGTGATCCTGTGGGA

>NC_021505|5|4|4570888-4570967|CRISPRCasFinder
TTCAGGCCTGTGGTGATCCTGTGGGA	AGCCAACTTCCACAGGGGCCCCACCTCT
TTCAGGCCTGTGGTGATCCTGTGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_021505.1\|WP_016501023.1\|4567290_4568223_-\|rhodanese-related-sulfurtransferase	unknown	unknown	gnl\|CDD\|223982
NC_021505.1\|WP_016501032.1\|4581249_4581429_-\|carbon-storage-regulator-CsrA	unknown	unknown	gnl\|CDD\|376847
NC_021505.1\|WP_016501033.1\|4582025_4582835_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235545
NC_021505.1\|WP_016501029.1\|4576039_4577827_+\|N-acetylglutaminylglutamine-amidotransferase	unknown	unknown	gnl\|CDD\|274430
NC_021505.1\|WP_003252630.1\|4579700_4580885_+\|osmoprotectant-NAGGN-system-M42-family-peptidase	unknown	unknown	gnl\|CDD\|132150
NC_021505.1\|WP_016501019.1\|4561359_4562145_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227711
NC_021505.1\|WP_041168116.1\|4560494_4561235_+\|YciK-family-oxidoreductase	unknown	unknown	gnl\|CDD\|236357
NC_021505.1\|WP_016501022.1\|4566654_4567287_-\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|226062
NC_021505.1\|WP_016485344.1\|4568750_4569275_-\|DUF2059-domain-containing-protein	unknown	unknown	gnl\|CDD\|225725
NC_021505.1\|WP_016501027.1\|4572216_4573710_-\|polyphosphate:AMP-phosphotransferase	unknown	unknown	gnl\|CDD\|274736
NC_021505.1\|WP_003252624.1\|4581719_4581872_+\|DUF3309-domain-containing-protein	unknown	unknown	gnl\|CDD\|378708
NC_021505.1\|WP_041167837.1\|4562175_4564632_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|182070
NC_021505.1\|WP_016501028.1\|4573846_4575811_+\|bifunctional-tRNA-(5-methylaminomethyl-2-thiouridine)(34)-methyltransferase-MnmD/FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC	unknown	unknown	gnl\|CDD\|234978
NC_021505.1\|WP_016501021.1\|4564829_4566662_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_021505.1\|WP_016501017.1\|4559732_4560404_+\|N-acetylmuramic-acid-6-phosphate-phosphatase-MupP	unknown	unknown	gnl\|CDD\|237310
NC_021505.1\|WP_016501026.1\|4571001_4571964_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NC_021505.1\|WP_016501025.1\|4569429_4570824_+\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|171490
NC_021505.1\|WP_016501030.1\|4577830_4579576_+\|N-acetylglutaminylglutamine-synthetase	unknown	unknown	gnl\|CDD\|132147
NC_021505.1\|WP_016501031.1\|4580969_4581197_+\|YheU-family-protein	unknown	unknown	gnl\|CDD\|166901
NC_021505.1\|WP_016501024.1\|4568443_4568740_-\|BolA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376601

Protein	Function_ID	Function_description	E-value
NC_021505.1\|WP_016501023.1\|4567290_4568223_-\|rhodanese-related-sulfurtransferase	gnl\|CDD\|223982	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only].	1.36415e-171
NC_021505.1\|WP_016501032.1\|4581249_4581429_-\|carbon-storage-regulator-CsrA	gnl\|CDD\|376847	pfam02599, CsrA, Global regulator protein family. This is a family of global regulator proteins. This protein is a RNA-binding protein and a global regulator of carbohydrate metabolism genes facilitating mRNA decay. In E. coli CsrA binds the CsrB RNA molecule to form the Csr regulatory system which has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis. In other bacteria such as Erwinia caratovara RmsA has been shown to regulate the production of virulence determinants, such extracellular enzymes. RmsA binds to RmsB regulatory RNA.	9.42679e-16
NC_021505.1\|WP_016501033.1\|4582025_4582835_-\|SDR-family-oxidoreductase	gnl\|CDD\|235545	PRK05650, PRK05650, SDR family oxidoreductase.	0
NC_021505.1\|WP_016501029.1\|4576039_4577827_+\|N-acetylglutaminylglutamine-amidotransferase	gnl\|CDD\|274430	TIGR03104, trio_amidotrans, asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.	0
NC_021505.1\|WP_003252630.1\|4579700_4580885_+\|osmoprotectant-NAGGN-system-M42-family-peptidase	gnl\|CDD\|132150	TIGR03106, trio_M42_hydro, hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.	0
NC_021505.1\|WP_016501019.1\|4561359_4562145_-\|hypothetical-protein	gnl\|CDD\|227711	COG5424, COG5424, Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism].	1.6163e-62
NC_021505.1\|WP_041168116.1\|4560494_4561235_+\|YciK-family-oxidoreductase	gnl\|CDD\|236357	PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional.	4.48423e-167
NC_021505.1\|WP_016501022.1\|4566654_4567287_-\|DsbA-family-protein	gnl\|CDD\|226062	COG3531, COG3531, Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones].	3.45403e-62
NC_021505.1\|WP_016485344.1\|4568750_4569275_-\|DUF2059-domain-containing-protein	gnl\|CDD\|225725	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown].	8.41689e-25
NC_021505.1\|WP_016501027.1\|4572216_4573710_-\|polyphosphate:AMP-phosphotransferase	gnl\|CDD\|274736	TIGR03708, poly_P_AMP_trns, polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP). [Central intermediary metabolism, Phosphorus compounds].	0
NC_021505.1\|WP_003252624.1\|4581719_4581872_+\|DUF3309-domain-containing-protein	gnl\|CDD\|378708	pfam11752, DUF3309, Protein of unknown function (DUF3309). This family is conserved in bacteria but its function is not known.	7.6494e-06
NC_021505.1\|WP_041167837.1\|4562175_4564632_-\|EAL-domain-containing-protein	gnl\|CDD\|182070	PRK09776, PRK09776, putative diguanylate cyclase; Provisional.	6.47564e-160
NC_021505.1\|WP_016501028.1\|4573846_4575811_+\|bifunctional-tRNA-(5-methylaminomethyl-2-thiouridine)(34)-methyltransferase-MnmD/FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC	gnl\|CDD\|234978	PRK01747, mnmC, bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC.	0
NC_021505.1\|WP_016501021.1\|4564829_4566662_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.49703e-137
NC_021505.1\|WP_016501017.1\|4559732_4560404_+\|N-acetylmuramic-acid-6-phosphate-phosphatase-MupP	gnl\|CDD\|237310	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP.	1.69042e-100
NC_021505.1\|WP_016501026.1\|4571001_4571964_-\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	2.50541e-13
NC_021505.1\|WP_016501025.1\|4569429_4570824_+\|class-II-fumarate-hydratase	gnl\|CDD\|171490	PRK12425, PRK12425, class II fumarate hydratase.	0
NC_021505.1\|WP_016501030.1\|4577830_4579576_+\|N-acetylglutaminylglutamine-synthetase	gnl\|CDD\|132147	TIGR03103, trio_acet_GNAT, GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.	0
NC_021505.1\|WP_016501031.1\|4580969_4581197_+\|YheU-family-protein	gnl\|CDD\|166901	PRK00304, PRK00304, hypothetical protein; Provisional.	5.83122e-43
NC_021505.1\|WP_016501024.1\|4568443_4568740_-\|BolA-family-transcriptional-regulator	gnl\|CDD\|376601	pfam01722, BolA, BolA-like protein. This family consist of the morphoprotein BolA from E. coli and its various homologs. In E. coli over expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase. BolA is also induced by stress during early stages of growth and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5.	3.18538e-29

>NC_021505.1|WP_016501025.1|4569429_4570824_+|class-II-fumarate-hydratase
MSRIETDSLGPVEVPDGAYWGAQTQRSLINFAIGKERMPLAVLHALALIKKAAARVNDRNGDLPADIARLIEQAADEVLDGQHDDQFPLVVWQTGSGTQSNMNVNEVIAGRANELAGKGRGGKAPVHPNDHVNRSQSSNDCFPTAMHIAAAQAVHEQLLPAVAELSSGLAELSARHQKLVKTGRTHMMDATPITFGQEVSAFVAQLDYAQRAIRATLPAVCELAQGGTAVGTGLNAPHGFAEAIAAELAAESGLPFVTAPNKFAALAGHEPLTSLAGALKTLAVALMKIANDLRLLGSGPRAGFAEVRLPANEPGSSIMPGKVNPTQCEALSMLACQVLGNDAAIGFAASQGHLQLNVFKPVIIHNLLQSIELLADGCRNFQLHCVAGIEPDAEQMAAHLERGLMLVTALNPHIGYDKAAEIAKKAYSEGKTLREAALELKYLTNEQFDQWVRPENMLAPGGKG
>NC_021505.1|WP_016485344.1|4568750_4569275_-|DUF2059-domain-containing-protein
MTRLRVLCAAVALACASGQVLAATASHNAAAEKFLTLANADKLGTPVYMQVQQMFAQRFAQTKAPAAKQPVLESYQAKANAALDNAIGWNKLKPKMVDLYTQTFTEQELKDLVKFYESPLGKKVLREMPKVTQQSAQLTQQSLEPAVPVVNKLLEDMTKELDPNAGKAAVPAKK
>NC_021505.1|WP_016501024.1|4568443_4568740_-|BolA-family-transcriptional-regulator
MTMQQRIEQQLGALAPQHLQVLDESHMHSRGQETHYKAVIVSEQFAGLNSVKRHQKVYATMGELMGQIHALAIHTYTAEEWAKVGVAPASPVCAGGGH
>NC_021505.1|WP_016501023.1|4567290_4568223_-|rhodanese-related-sulfurtransferase
MSQPIVVAALYKFVTLQDYVELREPLLKAMLDNDVKGTLLLAHEGINGTVSATREGIDGLLAWLRNDPRLADVDHKESYCDEQPFYRTKVKLKKEIVTLGVPGVDPNQAVGTYVEPKDWNALISDPEVLLIDTRNDYEVAIGTFKGAMDPKTETFREFPEYIKANFDPSKHKKVAMFCTGGIRCEKASSYMLGEGFEAVYHLKGGVLKYFEEVPQEESLWDGDCFVFDNRVTVRHDLSEGEYDQCHACRHPINAEERASEHYSPGVSCPHCWDTLSEKTRRSAIDRQKQIELAKARNLPHPIGYNYKAEA
>NC_021505.1|WP_016501022.1|4566654_4567287_-|DsbA-family-protein
MSARLIYVMDPMCSWCWGFAPVAAALIAQAREAGVVTRVVPGGLRTGGSALDSSTRKYILEHWQAVADATGQPFRFEGAMPEGFVYDTEPACRALVTARELDAERVWPLLALIQRSFYEQGVDVTTAPQLVELASQCGFDRTVFAETFARADTRAATAADFSWAQDLGIAGFPTLLAERNGQLALLTNGYQPLDRLQPLLGRWLQQAACA
>NC_021505.1|WP_016501021.1|4564829_4566662_-|ABC-transporter-ATP-binding-protein
MLDVPGSPDPVPGKPHAAGDRLSWAEIRRLALHHKKNLWSANCIAVLAACCSVPIPLLLPLLVDEVLLGHGDAALKWMNHLLPSNWQVAAGYIGLMLALTLCLRLAALAFNVIQAKLFAGLAKDIVYRLRIRLIERLKRISLKEYESLGSGTVTTHLVTDLDTLDKFVGETLSRFLVAMLTLTGTAAILIWMHWQLALLILLFNPLVIYFTVQLGKRVKHLKKLENDSTARFTQALTETLDAIQEIRASNRQGYFLGRLGLRAREVRDYAVDSQWKSDASGRASGLLFQFGIDIFRAAAMLTVLFSDLSIGQMLAVFSYLWFMIGPVEQLLNLQYAYYAAGGALSRLNELLARDDEPQYPAASDPFAGRETVGIEVRDLRFAYADEPVLENLDLSIAPGEKVAIVGASGGGKSTLVQLLLGLYSAQAGTIRFGGASLQEIGLETLRENVAVVLQHPSLFNDTVRANLTMGRDSSDDACWQALRIAQLDATIAALPQGLDSVVGRSGVRLSGGQRQRLAIARMVLAEPKVVILDEATSALDAATEYNLHLALARFLSGRTTLIIAHRLSAVKQADRVLVFDGGHVAEDGDHQQLIAEGGLYAKLYGHLQQS
>NC_021505.1|WP_041167837.1|4562175_4564632_-|EAL-domain-containing-protein
MKGHRTLEAPKLIGITWPFIAVVVFQVALGSLSLYTLSAVRAYVAGESLWSKAQKDAIYYLNLYADTRDESTYQRYRQAITVPQGDHQLREVLDQPSPDLAAARQAVLQGGNHPDDVERIIWFYRNFRNISYMHTAIDYWDIGDDYLAKLDVLAGEMRQSFASGPVDAQAVNAWKARIVTINEGVTPAAKAFSDALGEGSRMLLRVLLITNLLTAMFLIAIAWRRSSKLLVQRQAFATALQAEKERAQTTLQAIGDAVITADVDGCIGYMNPAAEQLTHWQSGQAQGLPLSALFSLVDEQAEEDGRSLVEQVLSGSLKGGAEHARLIQRLDGSTVSINLVGSPIVSDGQLSGIVLVLHDMTQERQYIANLSWQATHDALTGLANRREFEYRLEQALNGLARQAGRHSLMFLDLDQFKLVNDTCGHAAGDELLRHICAVLQSGLREGDTLARLGGDEFGVLLESCPPDQAERIAEQLRQMVQSLHFVWKGRPFVTTVSIGLVHIAQTPGTLETSLRAADMACYMAKEKGRNRVQVYHADDSELSMRFGEMAWIQRLHVALEENRFCLYAQEIAPLKTFEGPGHIEILLRLHDESGRTILPSSFIPAAERYGLMTALDRWVVRNVFQVVRQCLDEGREGPLSICAINLSGSSIGDDKFLDYLQRLFVEYAIPPRMICFEITETSAIANLGSAIRFINELKGLGCRFSLDDFCAGMSSFAYLKHLPVDYLKIDGSFVKDMLDDPVNRAMVEVINHIGHVMGKRTIAEFVETPLIEQALQEIGVDYAQGYLIERPQVFTCDSLQRQRIATRPLLQRAPGTFR
>NC_021505.1|WP_016501019.1|4561359_4562145_-|hypothetical-protein
MIDAFVRIGPLMDPASYPQWAQQLIEDCRESKRRVVEHEFYERLRDGQLKQSTIRQYLIGGWPVVEQFSLYMAHNLTKTRYGRHQGEDMARRWLMRNIRVELNHADYWVNWCQAHGVHLHELQAQEVPPELNGLNDWCWRVCATENLAISMAATNYAIEGATGEWSAVVCSTDTYAQGFPEDQRKRAMKWLKMHAQYDDAHPWEALEIICTLAGENPTLGLRTELRRAICKSYDCMYLFLERCMQLEGRQQGRLRPALAAG
>NC_021505.1|WP_041168116.1|4560494_4561235_+|YciK-family-oxidoreductase
MFDYTARHDLLQGRVILVTGAGRGIGAAAAKAYAAVGATVLLLGKTEANLNEVYDEIEAAGHPQPVVIPFNLETALPHQYDELAVMIEDQFGRLDGLLNNASIIGPRTPLEQLSGDNFMRVMHINVDATFMLTSTLLPLLKLSEDASVVFTSSSVGRKGRAYWGAYGVSKFATEGLMQTLADELEGVAPVRSNSINPGATRTAMRAQAYPSENPQNNPLPEEIMPVYLYLMGPDSKAVNGQALNAQ
>NC_021505.1|WP_016501017.1|4559732_4560404_+|N-acetylmuramic-acid-6-phosphate-phosphatase-MupP
MRLRAVLFDMDGTLLDTAPDFIAICQAMLAERGLPAIDDNLIRGVISGGARAMVATTFAMDPEAEGFEALRLEFLERYQRDCAVHSKLFDGMAELLADIEKGNLLWGVVTNKPVRFAEPIMQRLGLAERSALLICPDHVKNSKPDPEPLTLACTTLGLDPATVLFVGDDLRDIESGRDAGTRTAAVRYGYIHPEDNPNNWGADVVVDHPLELRKVIDSALCGC
>NC_021505.1|WP_016501026.1|4571001_4571964_-|DMT-family-transporter
MHTTSGRWSYGLFLALLTALLWGILPIKLKQVLQVVDPITVTWYRLLVSGGLLFAWLAARRRLPSFTRLAPKGKGLVVVAVLGLMGNYVLYLIGLNLLSPGTAQLVVQVGPVLLLVASVFVFRERFSLGQGVGLVILLAGFGLFFNQRLEELLTSLGTYTTGVLTILLATSIWVFYALSQKQLLTVWHSQQVMMVIYLSCAALLTPWVHPLEALQLTPVQGWLLLACCLNTLVAYGAFAEALAHWEASRVSATLALTPLVTFVAVALAALVWPEYVHAEDINALGYVGAVTVVSGSALVALGPSLVASWRARRARLAQVQ
>NC_021505.1|WP_016501027.1|4572216_4573710_-|polyphosphate:AMP-phosphotransferase
MFESAEIGHSIDKEAYDAEVPALREALLEAQYELKQQARFPVIVLINGIEGAGKGETVKLLNEWMDPRMIDVLTFDQQTDEELARPPAWRYWRALPPKGRMGVFFGNWYSQMLQGRVHGVFKDAVLDQAIMGAERLEQMLCDEGALIIKFWFHLSKKQMKARLKSLKDDPLHSWKISPLDWQQSQTYDRFVRFGERVLRRTSRDYAPWHIVEGVDPNYRSLAVGRILLDSLQAALANNPKGKHQGNVAPLGRSIDDRSLLGALDMTLRLDKADYQEQLVTEQARLAGLLRDKRMRRHALVAVFEGNDAAGKGSAIRRVAAALDPRQYRIVPIAAPTEEERAQPYLWRFWRHIPARGKFTIFDRSWYGRVLVERVEGFCSPADWMRAYSEINDFEEQLVNAGVVVVKFWLAIDQQTQLERFQEREQIPFKRYKITEDDWRNRDKWDEYAQAVGDMVDRTSSEIAPWTLVEANDKRWARVKVLRTINQALEAAFAKHKK
>NC_021505.1|WP_016501028.1|4573846_4575811_+|bifunctional-tRNA-(5-methylaminomethyl-2-thiouridine)(34)-methyltransferase-MnmD/FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC
MSTLLQHAQIDWDDQGRPHSRQYDDVYFAVNEGIEETKHVFLGQTRLAERFANLTPHSCMVIGETGFGTGMNFFCAWQLFDQHAHSDARLHFVSVEKYPLGHDDMARAVRLWPELAAYTEPLLEQYVAVHPGFQQFTFANGRVTLTLLIGDVLEQLPQLDAQIDVWFLDGFAPAKNPDMWTPELFAQLARLSHPGTVLGTFTTTGWVRRSLVEAGFAMKKVPGIGKKWEVMSGAYVGPLPAPGAPWYARPAPSQGPREALVIGAGLAGSTTAASLARRGWQVTVLERHEAPAQEASGNPQGVLYLKLSAHGTALSQMILSGFGYTRRQLERLQRGRDWDACGVLQLAFDNKEAERQGKLAAAFDHDLLHALERADAEAIAGVALPAGGLFYPEGGWVHPPALCQQQLQHPGTRLVTHQEVLELRKVDQQWQAWAGDCLIASAPVVILAGAAEVRRFEPCAQLPLKRIRGQITRLPATAGSRALRTVVCAEGYVAPPRGDEHTLGASFDFHSEDLAPTLAEHQGNLALLDEISVDLAQRLGTAELAPEQLQGRAAFRCTSPDYLPIVGPVADAQAFAEAYAVLGRDARQVPDVACPWLDGLYVNSGHGSRGLITAPLSGELVAAWVCGEPLPLPRAVAEACHPNRFALRKLIRGK
>NC_021505.1|WP_016501029.1|4576039_4577827_+|N-acetylglutaminylglutamine-amidotransferase
MCGLAGELRFTPIDQAPRPADLAAVERITHHLAPRGPDAWGFHSQGPIALGHRRLKIMDLSDGSAQPMVDNTLGLSLAFNGAIYNFPELRQELQDLGYSFWSDGDTEVLLKGYHAWGAALLPKLNGMFALAIWERDNQRLFLARDRLGVKPLYLSRNSERLRFASTLPALLKGGDIDPMLDPVALNHYLNFHAVVPAPRTLLANVQKLEPGTWMRIDRHGEVERQTWWQLKYGANPDERELDLEGWTTRVLDATRDAVAIRQRAAVDVGVLLSGGVDSSLLVGLLREAGVDDLSTFSIGFEDAGGERGDEFQYSDLIAKHYGTRHHQLRIAEHEIIDQLPAAFRAMSEPMVSHDCIAFYLLSREVAKHCKGVQSGQGADELFAGYHWYPQVDGADDAFAAYRDAFFDRSHAEYRDTVQAPWALETDAAGDFVREHFARPGARDAVDKALRLDSTVMLVDDPVKRVDNMTMAWGLEARTPFLDYRLVELSARIPARFKLPDGGKQVLKQAARRVIPHEVIDRKKGYFPVPGLKHLEGATLGWVRELLTDPSQDRGLFNPAMLDRLLSNPHGQLTPLRGSKLWQLAALNLWLSEQGI
>NC_021505.1|WP_016501030.1|4577830_4579576_+|N-acetylglutaminylglutamine-synthetase
MKAHEIAYGQRLLRGQAPSYERLQARLAGDGSLPHDQPRAVHCGWGRLLIGHTYPDPASLAEALLDESPGERDIALYVAAPQQLLAQAPQQLFLDPSDTLRLWFTDYRPAQRVFRGFRVRRAQNPADWQAINTLYQARGMLPVDAELLTPRHLGGPVYWLAEDEDSGAVIGSVMGLNHAKAFDDPEHGSSLWCLAVDPHCTRPGVGEVLVRHLIEHFMSRGLAYLDLSVLHDNRQAKRLYEKLGFRNLPTFAVKRKNGINEQLFLGPGPQADLNPYARIIVDEARRRGIEVQVDDAAGGLFTLSLGGRRIRCRESLSDLTSAVTMTLCQDKRLTQHALGNAGLQVPAQQLAGNADDNLAFLDEHGAVVVKPVDGEQGQGVAVNLTCIDDITRAVAHARQFDSRVLLESFHAGLDLRIVVIGYEVVAAAIRHPAQVLGDGKHSVRQLIEAQSRRRQAATGGESRIPLDDETERTLRAAGFGYDDVLPASQRLAVRRTANLHTGGTLEDVTERLHPVLADAAVRAARALEIPVVGLDFMVRDAGQPEYVIIEANERAGLANHEPQPTAERFIDLLFPHSRPLT
>NC_021505.1|WP_003252630.1|4579700_4580885_+|osmoprotectant-NAGGN-system-M42-family-peptidase
MSERLPEPDLDYLKRVLLEMLAIPSPTGFTDTIVRYVAERLDELGIPFELTRRGTIRATLKGRQTSPDRAVSAHLDTIGASVRQLQDNGRLALAPVGCWSSRFAEGSRVSVFTDTGVFRGSVLPLMASGHAFNTAIDQMPVSWEHVEVRLDAYCATRADCEALGISIGDFVAFDPLPEFTESGHISARHLDDKAGVAALLAALKAVVESGRQPLIDCHPLFTITEETGSGAAGALPWDVSEFVGIDIAPVAPGQASSEHAVSVAMQDSSGPYDYHLSRHLLKLAGDHDLPVRRDLFRYYFSDAHSAVTAGHDIRTALVAFGCDATHGYERTHIDSLAALSRLLSAYLLSPPVFASDSQPANASLERFSHQLEHDAQMESDTRVPAVDSLVGNKG
>NC_021505.1|WP_016501031.1|4580969_4581197_+|YheU-family-protein
MLIPYDQLQAETLTLLIEDFVTRDGTDNGDDTPLETRVLRVRQALAKGQAFILFDPESQQCQLLAKHDVPRELLD
>NC_021505.1|WP_016501032.1|4581249_4581429_-|carbon-storage-regulator-CsrA
MLVIGREVGEIIVIDDNIRIMVVDVREGVVRFGVDAPRSVQVHRAEVYKRIKEAKQGEA
>NC_021505.1|WP_003252624.1|4581719_4581872_+|DUF3309-domain-containing-protein
MTTILIIILILLLIGGLPVFPHSRSWGYGPSGIIGVVLVILLVLLLLGMI
>NC_021505.1|WP_016501033.1|4582025_4582835_-|SDR-family-oxidoreductase
MHNRIMITGAGSGLGREIALRWAREGWRLALADVNENGLRETLELARAAGGEGFIQRCDVRDYSQLTALAQACTEQFGGIDVIVNNAGVASGGFFAELSLEDWDWQIAVNLMGVVKGCKAFLPLLERSKGRIINVASMAALMQGPGMSNYNVAKAGVLALSESLLVELRQLEVSVHVVCPSFFQTNLLDSFRGPNPAMKAQVGKLLEGSPISAADIAGYIHQQVAAGEFLILPHEAGRQAWQLKCQAPERLYDEMADMAVKMRAKAPSR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_021505_4	4.1\|3883463\|22\|NC_021505\|PILER-CR	3883463-3883484	22	NZ_AP021845	Azospira sp. I09 plasmid pAZI09, complete sequence	80896-80917	2	0.909
NC_021505_4	4.1\|3883463\|22\|NC_021505\|PILER-CR	3883463-3883484	22	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	861669-861690	2	0.909
NC_021505_4	4.1\|3883463\|22\|NC_021505\|PILER-CR	3883463-3883484	22	MH001451	Mycobacterium phage Nairb, complete genome	15429-15450	2	0.909
NC_021505_4	4.1\|3883463\|22\|NC_021505\|PILER-CR	3883463-3883484	22	MF155936	Mycobacterium phage ZenTime222, complete genome	15429-15450	2	0.909
NC_021505_4	4.1\|3883463\|22\|NC_021505\|PILER-CR	3883463-3883484	22	MK494089	Mycobacterium phage Ibrahim, complete genome	15429-15450	2	0.909
NC_021505_4	4.1\|3883463\|22\|NC_021505\|PILER-CR	3883463-3883484	22	NC_024135	Mycobacterium phage Bernal13, complete genome	15429-15450	2	0.909
NC_021505_4	4.1\|3883463\|22\|NC_021505\|PILER-CR	3883463-3883484	22	KM591905	Mycobacterium phage RonRayGun, complete genome	15429-15450	2	0.909
NC_021505_4	4.1\|3883463\|22\|NC_021505\|PILER-CR	3883463-3883484	22	MN735432	Mycobacteriophage Whitty, complete genome	15429-15450	2	0.909
NC_021505_4	4.1\|3883463\|22\|NC_021505\|PILER-CR	3883463-3883484	22	NZ_CP025613	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence	126064-126085	3	0.864
NC_021505_2	2.1\|1964604\|26\|NC_021505\|CRISPRCasFinder	1964604-1964629	26	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	858639-858664	5	0.808
NC_021505_4	4.2\|3883514\|28\|NC_021505\|PILER-CR	3883514-3883541	28	NZ_CP039913	Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625b, complete sequence	23157-23184	6	0.786

1. spacer 4.1|3883463|22|NC_021505|PILER-CR matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 2, identity: 0.909

agccccggccttggcgccggcg	CRISPR spacer
ggccccggccatggcgccggcg	Protospacer
.********* ***********

2. spacer 4.1|3883463|22|NC_021505|PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 2, identity: 0.909

agccccggccttggcgccggcg	CRISPR spacer
ggccccggccttcgcgccggcg	Protospacer
.*********** *********

3. spacer 4.1|3883463|22|NC_021505|PILER-CR matches to MH001451 (Mycobacterium phage Nairb, complete genome) position: , mismatch: 2, identity: 0.909

agccccggccttggcgccggcg	CRISPR spacer
ggccccggcctcggcgccggcg	Protospacer
.**********.**********

4. spacer 4.1|3883463|22|NC_021505|PILER-CR matches to MF155936 (Mycobacterium phage ZenTime222, complete genome) position: , mismatch: 2, identity: 0.909

agccccggccttggcgccggcg	CRISPR spacer
ggccccggcctcggcgccggcg	Protospacer
.**********.**********

5. spacer 4.1|3883463|22|NC_021505|PILER-CR matches to MK494089 (Mycobacterium phage Ibrahim, complete genome) position: , mismatch: 2, identity: 0.909

agccccggccttggcgccggcg	CRISPR spacer
ggccccggcctcggcgccggcg	Protospacer
.**********.**********

6. spacer 4.1|3883463|22|NC_021505|PILER-CR matches to NC_024135 (Mycobacterium phage Bernal13, complete genome) position: , mismatch: 2, identity: 0.909

agccccggccttggcgccggcg	CRISPR spacer
ggccccggcctcggcgccggcg	Protospacer
.**********.**********

7. spacer 4.1|3883463|22|NC_021505|PILER-CR matches to KM591905 (Mycobacterium phage RonRayGun, complete genome) position: , mismatch: 2, identity: 0.909

agccccggccttggcgccggcg	CRISPR spacer
ggccccggcctcggcgccggcg	Protospacer
.**********.**********

8. spacer 4.1|3883463|22|NC_021505|PILER-CR matches to MN735432 (Mycobacteriophage Whitty, complete genome) position: , mismatch: 2, identity: 0.909

agccccggccttggcgccggcg	CRISPR spacer
ggccccggcctcggcgccggcg	Protospacer
.**********.**********

9. spacer 4.1|3883463|22|NC_021505|PILER-CR matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.864

agccccggccttggcgccggcg	CRISPR spacer
cagcccggccttggcgccggcg	Protospacer
 . *******************

10. spacer 2.1|1964604|26|NC_021505|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 5, identity: 0.808

cctgcgagagatcactgtcaatccac	CRISPR spacer
gctgcgggcgatcactgtcaatccgg	Protospacer
 *****.* ***************.

11. spacer 4.2|3883514|28|NC_021505|PILER-CR matches to NZ_CP039913 (Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625b, complete sequence) position: , mismatch: 6, identity: 0.786

ttcgctttgggaagccttgccgctcccc	CRISPR spacer
ttcgctttgggaaagcttgccgcgatct	Protospacer
*************. ********  .*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

371081 : 421979

Bacillus_virus(20.0%)

protease,holin,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012270095.1\|371081_372260_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.1e-24	36.7
WP_016484510.1\|372256_373102_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_016497605.1\|373186_374134_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_016497606.1\|374587_375964_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_016497607.1\|376456_377563_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_016497608.1\|377682_377940_-	hypothetical protein	NA	NA	NA	NA
WP_115283709.1\|378360_380271_+	peptidase M72 family protein	NA	NA	NA	NA
WP_016497611.1\|380571_382152_+	peptidase M72	NA	NA	NA	NA
WP_016497612.1\|382251_382722_-	hypothetical protein	NA	NA	NA	NA
WP_016497613.1\|382732_383698_-	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_016497614.1\|383716_384601_-	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_016497615.1\|384724_385669_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_016497616.1\|385815_386760_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_016497617.1\|386887_387289_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_016497618.1\|387573_388551_+	membrane dipeptidase	NA	NA	NA	NA
WP_016497619.1\|388628_389159_+	hypothetical protein	NA	NA	NA	NA
WP_016497620.1\|389174_391235_+	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_016497621.1\|391442_393395_+	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_016497622.1\|393394_394627_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_016484524.1\|394637_395408_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_041167495.1\|396224_397061_+	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_016484527.1\|397143_398436_-	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_016497624.1\|398744_399845_+	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_016497625.1\|399977_401603_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-68	44.3
WP_016497626.1\|401879_402110_+	hypothetical protein	NA	NA	NA	NA
WP_016484532.1\|402106_402409_+	cell division protein ZapA	NA	NA	NA	NA
WP_016497627.1\|402604_404542_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_016497628.1\|404647_405688_-	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_016497629.1\|406011_407265_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	8.6e-100	52.7
WP_016484536.1\|407280_408531_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_016484537.1\|408545_408881_+	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_016497630.1\|408877_411892_+	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_012270121.1\|412071_412704_+	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_016484540.1\|412716_413574_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_016497631.1\|413844_415044_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	1.5e-13	28.7
WP_080642752.1\|415235_415997_-	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_016497632.1\|416191_416767_+	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_080642753.1\|416843_417527_-	RHS repeat-associated core domain-containing protein	B6SD27	Bacteriophage	2.8e-20	50.6
WP_016497634.1\|417628_418978_-	amino acid permease	NA	NA	NA	NA
WP_016497635.1\|419209_420097_-	acyltransferase	NA	NA	NA	NA
WP_016497636.1\|420279_420780_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_016497637.1\|421025_421979_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

2037360 : 2046174

uncultured_Caudovirales_phage(75.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016498861.1\|2037360_2038641_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.0e-95	54.1
WP_016498862.1\|2038641_2040033_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_016498863.1\|2040162_2041122_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_041167993.1\|2041216_2042218_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	2.1e-157	81.1
WP_016498865.1\|2042229_2042565_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	4.9e-42	75.7
WP_016498866.1\|2042561_2042858_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	2.3e-27	63.6
WP_016498867.1\|2042857_2043217_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	2.5e-36	65.0
WP_016498868.1\|2043218_2043611_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	6.5e-54	79.8
WP_016498869.1\|2043785_2045165_-	uracil-xanthine permease	H9YQ34	environmental_Halophage	1.6e-27	51.1
WP_003251184.1\|2045502_2046174_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.1e-105	91.0

DBSCAN-SWA_3

2090114 : 2097019

Pseudomonas_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016498916.1\|2090114_2090573_-	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	8.4e-45	67.5
WP_016498917.1\|2090569_2090794_-	hypothetical protein	NA	NA	NA	NA
WP_016498918.1\|2090793_2091168_+	DUF3168 domain-containing protein	A0A2D1GNT4	Pseudomonas_phage	1.1e-50	78.9
WP_016498919.1\|2091223_2091724_+	hypothetical protein	A0A2D1GNF2	Pseudomonas_phage	1.1e-69	79.9
WP_016498920.1\|2091736_2092078_+	hypothetical protein	A0A2D1GNT5	Pseudomonas_phage	1.5e-22	51.9
WP_016498921.1\|2092408_2092888_+	hypothetical protein	NA	NA	NA	NA
WP_016498922.1\|2092958_2093852_+	hypothetical protein	A0A0U4JEA4	Pseudomonas_phage	4.6e-47	48.0
WP_016498923.1\|2093848_2094733_+	hypothetical protein	NA	NA	NA	NA
WP_016498924.1\|2094759_2094957_+	hypothetical protein	NA	NA	NA	NA
WP_016498925.1\|2095310_2095673_+	hypothetical protein	NA	NA	NA	NA
WP_016498926.1\|2095974_2096337_+	hypothetical protein	NA	NA	NA	NA
WP_016498927.1\|2096593_2097019_-	type II toxin-antitoxin system HicB family antitoxin	Q7Y3V7	Yersinia_phage	1.1e-19	40.1

DBSCAN-SWA_4

3935972 : 3971477

Feldmannia_species_virus(33.33%)

coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016500508.1\|3935972_3936941_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_016500509.1\|3936937_3939235_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_016500510.1\|3939343_3940120_-	molecular chaperone	NA	NA	NA	NA
WP_016500511.1\|3940159_3940663_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_016500512.1\|3940666_3941200_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_016500513.1\|3941218_3941755_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_041167793.1\|3941785_3942313_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_016500515.1\|3942581_3944828_+	GAF domain-containing protein	B5LWN8	Feldmannia_species_virus	6.0e-27	22.4
WP_016500516.1\|3944843_3945305_+	response regulator	NA	NA	NA	NA
WP_016500517.1\|3945318_3947706_+	response regulator	Q8QNA2	Ectocarpus_siliculosus_virus	2.9e-11	26.1
WP_012271609.1\|3948185_3948428_+	hypothetical protein	NA	NA	NA	NA
WP_016500518.1\|3948555_3949626_+	cell division protein ZapE	NA	NA	NA	NA
WP_016500519.1\|3949753_3951643_-	propionyl-CoA synthetase	A0A2H4PQU7	Staphylococcus_phage	2.8e-54	29.5
WP_016500520.1\|3951822_3952689_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_016500521.1\|3952662_3953817_-	HPP family protein	NA	NA	NA	NA
WP_016500522.1\|3954100_3955420_-	sensor histidine kinase	NA	NA	NA	NA
WP_016500523.1\|3955416_3956085_-	response regulator transcription factor	NA	NA	NA	NA
WP_016500524.1\|3956085_3956400_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_016500525.1\|3956399_3956708_-	hypothetical protein	NA	NA	NA	NA
WP_016500526.1\|3956945_3958025_+	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_012271598.1\|3958079_3958436_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_151326450.1\|3958446_3958929_-	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_041167795.1\|3959335_3961945_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
WP_016500529.1\|3962018_3963503_-	2-methylcitrate dehydratase	NA	NA	NA	NA
WP_016500530.1\|3963669_3964860_-	2-methylaconitate cis-trans isomerase PrpF	NA	NA	NA	NA
WP_016500531.1\|3965010_3967599_-	Fe/S-dependent 2-methylisocitrate dehydratase AcnD	NA	NA	NA	NA
WP_016500532.1\|3967790_3968918_-	2-methylcitrate synthase	NA	NA	NA	NA
WP_016485912.1\|3969030_3969921_-	methylisocitrate lyase	NA	NA	NA	NA
WP_016500533.1\|3969917_3970634_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_016500534.1\|3970940_3971477_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA

DBSCAN-SWA_5

5582950 : 5592235

Agrobacterium_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016501865.1\|5582950_5584156_+	nicotinate phosphoribosyltransferase	A0A2L0UZQ6	Agrobacterium_phage	1.0e-49	35.4
WP_016501866.1\|5584159_5584987_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	7.8e-49	47.0
WP_016501867.1\|5585100_5585550_-	azurin	NA	NA	NA	NA
WP_016501868.1\|5585899_5586487_+	TIGR00730 family Rossman fold protein	A0A2I2L3F0	Orpheovirus	5.2e-07	24.4
WP_041167906.1\|5586622_5588923_-	YgiQ family radical SAM protein	M1QSD9	Pseudomonas_phage	7.5e-134	94.6
WP_016501870.1\|5589124_5589388_-	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_016501871.1\|5589813_5590761_+	hypothetical protein	B6SD27	Bacteriophage	3.4e-16	51.9
WP_016501872.1\|5590837_5592235_-	replicative DNA helicase	O80281	Escherichia_phage	3.6e-147	59.1

DBSCAN-SWA_6

5816548 : 5822873

Microcystis_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016502029.1\|5816548_5818009_+	YdiU family protein	A0A075BSJ0	Microcystis_phage	3.4e-63	37.8
WP_016502030.1\|5818145_5818580_+	thioredoxin TrxC	A0A0A7CHH9	Dinoroseobacter_phage	4.4e-11	34.7
WP_016502031.1\|5818583_5818940_-	hypothetical protein	A0A222YXG1	Escherichia_phage	2.7e-30	59.8
WP_016502032.1\|5818929_5819238_-	type II toxin-antitoxin system HigB family toxin	A0A0P0ZE17	Stx2-converting_phage	4.2e-16	47.4
WP_016502033.1\|5819306_5820080_-	ParA family protein	NA	NA	NA	NA
WP_016502034.1\|5820156_5821056_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	7.2e-08	26.2
WP_041167928.1\|5821164_5822409_+	MFS transporter	NA	NA	NA	NA
WP_016502036.1\|5822525_5822873_-	NirD/YgiW/YdeI family stress tolerance protein	A0A1I9LJU6	Stx_converting_phage	1.1e-09	38.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_021505

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection