CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_021499	Pseudomonas resinovorans NBRC 106553, complete genome	2 crisprs	DEDDh,DinG,cas3,csa3	0	0	2	0
NC_021506	Pseudomonas resinovorans NBRC 106553 plasmid pCAR1.3, complete sequence	2 crisprs	NA	0	5	12	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_021499_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021499_1

843453-843548

Orphan

Consensus_repeat	Method
TGGCCCTGGTAGTGGCTGCCGTCGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021499_1

>merge|NC_021499|1|843453-843548|CRISPRCasFinder
TGGCCCTGGTAGTGGCTGCCGTCGGCGAGGGCCAGCTTGCCTTCGCCCTGGTAGCGCCAGTGGCGGAAGTGGCCCTGGTAATGGCTGCCGTCGGCG

>NC_021499|1|1|843453-843548|CRISPRCasFinder
TGGCCCTGGTAGTGGCTGCCGTCGGCG	AGGGCCAGCTTGCCTTCGCCCTGGTAGCGCCAGTGGCGGAAG
TGGCCCTGGTAATGGCTGCCGTCGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_021499.1\|WP_016490717.1\|840373_840664_+\|YceK/YidQ-family-lipoprotein	unknown	unknown	gnl\|CDD\|227932
NC_021499.1\|WP_016490721.1\|844336_844792_-\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239534
NC_021499.1\|WP_016490727.1\|849142_850408_+\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NC_021499.1\|WP_016490715.1\|838390_839743_+\|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|130153
NC_021499.1\|WP_016490726.1\|848112_848823_-\|DNA-3-methyladenine-glycosylase	unknown	unknown	gnl\|CDD\|234840
NC_021499.1\|WP_016490730.1\|851446_851914_+\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	unknown	unknown	gnl\|CDD\|224492
NC_021499.1\|WP_016490719.1\|841854_842496_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|187560
NC_021499.1\|WP_016490722.1\|845003_845366_+\|CidA/LrgA-family-protein	unknown	unknown	gnl\|CDD\|224298
NC_021499.1\|WP_016490712.1\|835202_835937_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NC_021499.1\|WP_016490710.1\|833036_834206_-\|2-aminoethylphosphonate--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|184076
NC_021499.1\|WP_016490728.1\|850407_851052_+\|nicotinate-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|234611
NC_021499.1\|WP_016490714.1\|836753_838085_-\|C4-dicarboxylate-transporter-DctA	unknown	unknown	gnl\|CDD\|183850
NC_021499.1\|WP_016490724.1\|846088_846679_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225362
NC_021499.1\|WP_016490729.1\|851074_851434_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|272901
NC_021499.1\|WP_016490725.1\|846799_848116_-\|bifunctional-DedA-family/phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NC_021499.1\|WP_016490718.1\|841282_841750_-\|YbaK/EbsC-family-protein	unknown	unknown	gnl\|CDD\|239825
NC_021499.1\|WP_016490713.1\|835993_836689_-\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NC_021499.1\|WP_016490711.1\|834336_835206_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|132382
NC_021499.1\|WP_016490723.1\|845362_846079_+\|LrgB-family-protein	unknown	unknown	gnl\|CDD\|377236
NC_021499.1\|WP_016490716.1\|839751_840381_+\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|180312

Protein	Function_ID	Function_description	E-value
NC_021499.1\|WP_016490717.1\|840373_840664_+\|YceK/YidQ-family-lipoprotein	gnl\|CDD\|227932	COG5645, COG5645, Predicted periplasmic lipoprotein [General function prediction only].	4.37946e-15
NC_021499.1\|WP_016490721.1\|844336_844792_-\|MaoC-family-dehydratase	gnl\|CDD\|239534	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.	8.76242e-86
NC_021499.1\|WP_016490727.1\|849142_850408_+\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NC_021499.1\|WP_016490715.1\|838390_839743_+\|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	gnl\|CDD\|130153	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_021499.1\|WP_016490726.1\|848112_848823_-\|DNA-3-methyladenine-glycosylase	gnl\|CDD\|234840	PRK00802, PRK00802, DNA-3-methyladenine glycosylase.	4.93151e-72
NC_021499.1\|WP_016490730.1\|851446_851914_+\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	gnl\|CDD\|224492	COG1576, COG1576, Uncharacterized conserved protein [Function unknown].	3.53381e-82
NC_021499.1\|WP_016490719.1\|841854_842496_-\|oxidoreductase	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.79879e-80
NC_021499.1\|WP_016490722.1\|845003_845366_+\|CidA/LrgA-family-protein	gnl\|CDD\|224298	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only].	3.63104e-23
NC_021499.1\|WP_016490712.1\|835202_835937_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	2.37745e-36
NC_021499.1\|WP_016490710.1\|833036_834206_-\|2-aminoethylphosphonate--pyruvate-transaminase	gnl\|CDD\|184076	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional.	0
NC_021499.1\|WP_016490728.1\|850407_851052_+\|nicotinate-nucleotide-adenylyltransferase	gnl\|CDD\|234611	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase.	4.29168e-84
NC_021499.1\|WP_016490714.1\|836753_838085_-\|C4-dicarboxylate-transporter-DctA	gnl\|CDD\|183850	PRK13027, PRK13027, C4-dicarboxylate transporter DctA; Reviewed.	0
NC_021499.1\|WP_016490724.1\|846088_846679_+\|hypothetical-protein	gnl\|CDD\|225362	COG2802, COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only].	2.41748e-48
NC_021499.1\|WP_016490729.1\|851074_851434_+\|ribosome-silencing-factor	gnl\|CDD\|272901	TIGR00090, rsfS_iojap_ybeB, ribosome silencing factor RsfS/YbeB/iojap. This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes RsfS(YbeB) from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. The conserved function of this protein is to silence ribosomes by binding the ribosomal large subunit and impairing joining with the small subunit in response to nutrient stress. Note that RsfS (starvation) is an author-endorsed change from the published symbol RsfA, which conflicted with previously published gene symbols. [Protein synthesis, Translation factors].	4.89046e-54
NC_021499.1\|WP_016490725.1\|846799_848116_-\|bifunctional-DedA-family/phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	6.28112e-39
NC_021499.1\|WP_016490718.1\|841282_841750_-\|YbaK/EbsC-family-protein	gnl\|CDD\|239825	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.	1.75747e-72
NC_021499.1\|WP_016490713.1\|835993_836689_-\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	1.30024e-44
NC_021499.1\|WP_016490711.1\|834336_835206_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|132382	TIGR03339, phn_lysR, aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466). [Regulatory functions, DNA interactions].	1.9308e-116
NC_021499.1\|WP_016490723.1\|845362_846079_+\|LrgB-family-protein	gnl\|CDD\|377236	pfam04172, LrgB, LrgB-like family. The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control of murein hydrolase activity and penicillin tolerance.	3.70942e-84
NC_021499.1\|WP_016490716.1\|839751_840381_+\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|180312	PRK05920, PRK05920, aromatic acid decarboxylase; Validated.	6.44164e-133

>NC_021499.1|WP_016490719.1|841854_842496_-|oxidoreductase
MHLTPQHILLAGATGLTGEHLLDRLLNEPTVARVLAPTRRPLAEHPHLQNPVGPLADLLPQLQGQVDVAFCCLGSTIRQAGSQNAFRAVDLELVLAVARRARELGARHFIVISALGANPASPVFYNKVKGEMERALQAMDWPQLTIARPSLLMGPRSEFRLGERVAALFLRWLPGKYRGIGACSLARALWRLALEEQDGVRIIESDELRRLGR
>NC_021499.1|WP_016490718.1|841282_841750_-|YbaK/EbsC-family-protein
MSLESVRAFFAGKAPDIDIIELSTSTATVALAAEAHGVEPGRIAKTLAFRVGEDAVLVVARGDARIDNRKFKETFGAKAKMLDAETVQALTSHPVGGVCPFGLATPMPVYCDRSLQAFDEVVPAAGAVHSAVRITPDRMAELVEARWVDVCQEPG
>NC_021499.1|WP_016490717.1|840373_840664_+|YceK/YidQ-family-lipoprotein
MIKGAVPILLALVLLQGCASVGTLNAAKPGAPIIYSGTRLDWYSLNDGCCPMDRFGVDAPEYPAIDLPASALLDTLLLPFAVAAELGVVLGVSGGY
>NC_021499.1|WP_016490716.1|839751_840381_+|UbiX-family-flavin-prenyltransferase
MNGPSRITLAMTGASGAQYGLRLLDCLIQEDREVHFLISKAAQLVMATETDVTLPAKPQAMQAFLSEYTGAAPGQIRCYGKEDWMSPVASGSGAPAAMVVVPCSTGTLSAIATGACNNLIERAADVTLKERRQLILVPREAPYSSIHLENMLKLSNLGAVIVPASPGFYHQPQTIDDLVDFVVARILNLLDIPQDMLPRWGEHHQGVDD
>NC_021499.1|WP_016490715.1|838390_839743_+|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase
MHIHILGICGTFMGSLAVLAKELGHRVTGSDANVYPPMSTQLEAQGIELMQGYDPAHLDPEPDLVVVGNALSRGNPAVEHVLNKGLPYVSGPQWLADHVLQGRWVLAAAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFGVSARLGGTPFFVVEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLASIERQFHHLVRTIPGEGLIIHPTSETALKRVVEMGCWTPVQTTGEGGQWQARLLSEDGSRFEVLFEGAVTGTVDWELTGRHNVANALATLAAARHVGVVPELGVAALSAFKSVKRRMEKVAEVKGVTLYDDFAHHPTAIATTLDGLRKRVGDAPVIAVIEPRSNSMKLGAHRDGLPDSVKLADQVFWYAPPNLGWDLAATVAGSTVATRVCDSLEAIIDGVKAIATPGTQVVIMSNGGFGGLHGKLAKALAE
>NC_021499.1|WP_016490714.1|836753_838085_-|C4-dicarboxylate-transporter-DctA
MLLKLCSRSIFLQVVVGLVIGVLCGVALPEFSVHLKPLGDGFIKLIKMLIALIVFCVVVNGISGAGDLKKVGRIGLKSVIYFEVLTTIALVLGLAVAYGLGLGAGANIDLSSLHGADAAVYGSATKQLHGPVDFILGLIPSSVFGAFAENNILQVLLFAVLFGSALNLVGEQASGVSRLIGEVSHVIFRIMGMIVRLAPLGVFGAVAFTTSRYGLESLSHLGALVAVFYLTCALFVLVVLGGVLRLCGVPLIPFIRYFREELLIVLGTASSDAVLPQVMRKLERLGIRSSTVGLVIPTGYSFNLDGFSIYLTLAVVFIAHATGTPLSAGDLLTILLVSLVTSKGAHGIPGSALVILAATLTAVPAIPAAGLVLVLSVDWFMGIGRALTNLIGNCVATVTIARWESDIDIQRAQAILAGDNADDKQDGSLQLRTQLARPGKTDA
>NC_021499.1|WP_016490713.1|835993_836689_-|FadR-family-transcriptional-regulator
MFSSSKRVNSIVQKLLEPIEQGLWAAGQMLPGQRELAEQLEISRPSLREAITVLETLGVVRSLPGKGVMVLERRGQSLDEVRIPVAASATAEDVLQLRYALEPFIVGLVAQTVDDNALSQLRLLVLDMREAVEDRNPTAVASAYSAFHRKLVAITSNPIFLSVSQQIAGALEQSEGPALRDPEHAEQILEEHETILRAIRRHDSELASRAMRQHILNEGVRLNLDLRLPEA
>NC_021499.1|WP_016490712.1|835202_835937_-|GntR-family-transcriptional-regulator
MQVGSPPNPASGEAQGQSRAPGHLVYEALYSAILERRLAPATRLSKETLGRIFRVSTGTVQRALTRLADEGAVELAPNQVAAIARPCERNARELLEARLMIEAQVIRLIGDRLDAQHLAELRAMVERQRHCLAVGDHAGLLGQANRFHLRLAEHAGNPWLQSFLAKLLPRAALSIALSRGRAYTEASCDEHQALLDALEAGDPELAGELLSRHLHGLFARLRFTPPPTEDLRAAFQGRLEQPRR
>NC_021499.1|WP_016490711.1|834336_835206_+|LysR-family-transcriptional-regulator
MAVSQAQLKAFHAVAVHGNFTRAAEALFLSQPAVSDQVRKLEERFGILLFHRNKRSVQLTDLGERLLAITQRLFTAEAEVQELLSSERALETGSLTLAVDSPVHLLGHIARFCERYPGITVRLVTGNSDECLRRLREYKADFALLGRAVEDEGLITQVLSSSPLVAFVAHSHPWAARDSIVLADLEDMPMVLRERGSMTRQILEEEMARAGIAIRPAIEVEGREATFEMVAAGLGVGLVSAAEVGASANVQVLPIRDCRQRMTETLVCLREQGSRRIIETFFEIVRGPR
>NC_021499.1|WP_016490710.1|833036_834206_-|2-aminoethylphosphonate--pyruvate-transaminase
MTKAEFPTATQPLAAPALGEPYLLTPGPLTTSKATKEAMLRDWGSWDGAFNLVTAEVRQELLSMAGVQDDSFACVPLQGSGSFSVEAALATAIPRDGKCLILMNGAYGQRAAKTLDYLGRAYLTLDKGDYLPPQPDEVDALLKANPDVTNVFLVHCETSSGILNPLREIADVVKAHGKSLIVDAMSSFGAVPLTINEIPFDVLVSSANKCIEGIPGFGFVIIRRTVLEAAKGRAHSLALDIYEQWLYMERTGQWRFTPPTHSVVAFRTALEQHASEGGVAGRLARYTRNRDVLVAGMREMGFKTLLEDRWLSPIITTFFSPEHPNFEFKRFYEELKSRSFVIYPGKLTQAESFRIGCIGQIDEHIVRQLLRAIGDSLEAMGVDMEQTTA
>NC_021499.1|WP_016490721.1|844336_844792_-|MaoC-family-dehydratase
MAFVPVAELKDYVGKELGHSDWVTIDQNRINQFAECTGDHQFIHVDPERAKQTPFGGTIAHGFLSLSLIPKLIEDLLILPEGAKMVVNYGLDSVRFIQPVKVDSRVRLAVKVIDITEKNPGQWLIKALCTLEIEGQQKPAYIAESLSLSFV
>NC_021499.1|WP_016490722.1|845003_845366_+|CidA/LrgA-family-protein
MLLRGLTWLVLFQLIGSGLNALFLSMLPGPIIGLVLLFIYLLVRGEVGEPLSLAASSLLRYLPLLLVPPAVGVMVYARDIWADFWAIVGALVLSLLLAFIFCGVLMQKLIDRQARSREDT
>NC_021499.1|WP_016490723.1|845362_846079_+|LrgB-family-protein
MSLDWHAAVQAVTHHPLFGFGMTLAVYQLALAAYEKTRWVFLQPVLLSMLLLIGVLLTFGISYQEYRQSTQLLTVFLGPATVALAVPLFLNLRRIRQLFWPTLLTLVFGGLFATLSVALLGWWFGTERMVLMTLLPKSVTSPIAMLVAEQIGGVAALAAVFVLITGVLGAILGPELLRRCGVRHPAAQGIALGVTAHAVGTARALQEGEECGAFAALAMSLMGVATAVLLPLAVAMIA
>NC_021499.1|WP_016490724.1|846088_846679_+|hypothetical-protein
MKLPLFPLNTVLFPGCTLDLQIFEARYLDMIGRCMKQGEGFGVVCILEGQEVGEAASRFAAMGCEALIRDWQQRPNGLLGIRVEGGRRFHVGKAEVLRDQLTLADVEWLEDEPERPLRPEHADLAALLNALAEHPMVQGLGMGGVVEGQQALANQLSYLLPFHLKEKLQLLALADPDERLGFLQGLLDQLQGESIA
>NC_021499.1|WP_016490725.1|846799_848116_-|bifunctional-DedA-family/phosphatase-PAP2-family-protein
MSQWYDQVTAWLSANPEWLGLAIFLIALVECLAIAGIVVPGVALLFAVGVMAGSGALELWETLLLAYAGGLVGDMISYGLGRRFHQNIRRLPLLRDHPEWINSAENYFQRYGVASLLVGRYIGPLRPMLPMVAGMLDMPFPRFIAVSMLAAAGWAVAYLVPGWATGAALRLPLPEGFWAEAGVVLLTLVVMFGLIIHSTLREKRWANPMAAGFCLAALGALLIGWPHLQALDQGLMTLVQEQRHAGLDRFMVLVTRLGDFQTQLLAGALLGGLLLLLRQWRAACFTVATLVATALANTGLKHLFARARPEVLTEPLTTFSFPSGHSSAAFAFFLVLGILAGRGQPGRLRLTWLLLACLPALAIALSRVYLGVHWPSDILAGALLAGGIASAGLALMQRAAPLTAMGARVWVLLLPAVLALLGGVATWALPDALARYSY
>NC_021499.1|WP_016490726.1|848112_848823_-|DNA-3-methyladenine-glycosylase
MSRDPTLNPPWPGARPLADTFFDRDAQLVARELLGKVIRHRVDGRWLAARIIETEAYYLVDKGSHASLGYTHKRRALFLDGGHIYMYYARGGDSLNFSAHGAGNAVLIKSGHPWVDDISQADALAAMQLNNPDARGQARAPEQLCAGQTLLCKALGLKVPDWDGQRFDWQRLFVEDVGERPARIIQAARLGIPHGRDEHLPYRFVDAAYARHCTRNPLRRGQVEGQDYQLIEDKHP
>NC_021499.1|WP_016490727.1|849142_850408_+|glutamate-5-semialdehyde-dehydrogenase
MTESVLDYMTRLGRAARAASRVAARASTAQKNRALLAAADALDGARAELSAANEQDLANGQANGLEPAMLDRLALTPARIDDMIEGLRQVATLPDPIGEIRDMRYLPSGIQVGKMRVPLGVIGIIYESRPNVTIDAASLCLKSGNATILRGGSEAIHSNQAIARCIQKGLADAGLPSELVQVVETTDRAAVGALISMPEFVDVIVPRGGKSLIERISREAKVPVIKHLDGICHVYIDIAADLDKAIRVADNAKTQRYAPCNTMETLLVHAGIAARVLPPLAAIYRDKGVELRGDAATRALLGNDVLEATEEDWRTEYNAPILSIRVVDGLEQAILHINTYGSQHTDAIITENFSDARRFLTEVDSASVMVNASTRFADGFEYGLGAEIGISTDKLHARGPVGLEGLTSEKYVVFGDGHVRT
>NC_021499.1|WP_016490728.1|850407_851052_+|nicotinate-nucleotide-adenylyltransferase
MGKRIGLFGGTFDPVHIGHLRGAVEVAEQFGFDELRLIPSARPPHRETPQVSAAQRLEMVTLAVAGVAPLAVDDRELKRERPSWTIETLESLRTELQPDDQLFLLVGWDAFCGLPSWHRWSELLDHCHILVLQRPDADSEAPETLRDLLAARSAAEPQSLQGPAGQIAFVWQTPLAISATQIRQLLGEGRSVRFLVPDAVLAYIHAHDLYRAPN
>NC_021499.1|WP_016490729.1|851074_851434_+|ribosome-silencing-factor
MQNEELVKVAIAALEDLKGQEITTIDVRGKTSITDFMVIASGTSSRHVKSLAENVLEKVKEEGIRPLGSEGLDGGEWALLDLGDVVVHVMQVATRQFYDLERLWQGAEQSRAHHSHEHE
>NC_021499.1|WP_016490730.1|851446_851914_+|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH
MRLRLIAVGTRMPRWVEEGWNEYAKRLPSELSLELVEIPLTTRGKNADVARMIRQEGEAMLAKVQPGERIVTLEVQGKPWSTEQLAVELDRWRLDSRTVNLMVGGPEGLAPEVCARSEQRWSLSPLTLPHPLVRILIGEQIYRAWTVLSGHPYHK

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Crispr_ID: NC_021499_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021499_2

1467722-1468309

Orphan

Consensus_repeat	Method
CCCAACCCTGTAGGGGCGANTTCANTCGC	CRT
GGGGCGAATTCATTCGCCAAGGGCAACTCGTTGCCCCGG	CRISPRCasFinder

7 spacers

The CRISPR arrays of NC_021499_2

>merge|NC_021499|2|1467722-1468309|CRT,CRISPRCasFinder
TGAGACCCTGTGGGGGCGATTTCAATCGCAGCTCCCCGCAGGAGCGAGCTCTGCTCGCGAACCCCCCCGCGCCAAACTCACCCCAACCCTGTAGGGGCGAATTCATTCGCCAAGGGCAACTCGTTGCCCCGGTGCCGGCACACATCCCCTGTGCCGTACTCACCCCAACCCTGTGGGGGCGAATTCATTCGCCAAGGGCAACTCGTTGCCCCGGGACGGCACACAATCCCCCGCGCGCACCCACCCCTGTAGGGGCGATTTCAATCGCAGCTCCCCGTAGGAGCGAGCTCTGCTCGCGATCACCCCCGCACCAAACTCCCCCCAACCCTGTAGGGGCGAATTCATTCGCCAAGGGCAACCCGTTGCCCCGGGACGGCACACAATCCCCCGCGCGCACCCACCCCTGTAGGGGCGATTTCAATCGCAGCTCCCCGTAGGAGCGAGCTCTGCTCGCGATTCCCCCACGCCAAACTCACCCCAACCCTGTAGGGGCGAATTCATTCGCCAAGGGCAACCCGTTGCCCCGGTGCCGGCACACAACCCCCGCACCAAACTCCTCCCCAACCCTGTAGGAGCGAATTCATTCGC

>NC_021499|2|1|1467722-1468309|CRT
TGAGACCCTGTGGGGGCGATTTCAATCGC	AGCTCCCCGCAGGAGCGAGCTCTGCTCGCGAACCCCCCCGCGCCAAACTCAC
CCCAACCCTGTAGGGGCGAATTCATTCGC	CAAGGGCAACTCGTTGCCCCGGTGCCGGCACACATCCCCTGTGCCGTACTCAC
CCCAACCCTGTGGGGGCGAATTCATTCGC	CAAGGGCAACTCGTTGCCCCGGGACGGCACACAATCCCCCGCGCGCA
CCCACCCCTGTAGGGGCGATTTCAATCGC	AGCTCCCCGTAGGAGCGAGCTCTGCTCGCGATCACCCCCGCACCAAACTCCC
CCCAACCCTGTAGGGGCGAATTCATTCGC	CAAGGGCAACCCGTTGCCCCGGGACGGCACACAATCCCCCGCGCGCA
CCCACCCCTGTAGGGGCGATTTCAATCGC	AGCTCCCCGTAGGAGCGAGCTCTGCTCGCGATTCCCCCACGCCAAACTCAC
CCCAACCCTGTAGGGGCGAATTCATTCGC	CAAGGGCAACCCGTTGCCCCGGTGCCGGCACACAACCCCCGCACCAAACTCCTC
CCCAACCCTGTAGGAGCGAATTCATTCGC

>NC_021499|2|2|1467815-1467935|CRISPRCasFinder
GGGGCGAATTCATTCGCCAAGGGCAACTCGTTGCCCCGG	TGCCGGCACACATCCCCTGTGCCGTACTCACCCCAACCCTGTG
GGGGCGAATTCATTCGCCAAGGGCAACTCGTTGCCCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_021499.1\|WP_016491312.1\|1477184_1477574_+\|SnoaL-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238404
NC_021499.1\|WP_016491309.1\|1474587_1475370_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|236110
NC_021499.1\|WP_016491299.1\|1464617_1465742_+\|agmatine-deiminase-family-protein	unknown	unknown	gnl\|CDD\|377332
NC_021499.1\|WP_016491295.1\|1460459_1461344_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NC_021499.1\|WP_016491298.1\|1463442_1464546_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270377
NC_021499.1\|WP_016491297.1\|1462531_1463446_+\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NC_021499.1\|WP_016491300.1\|1465972_1466647_-\|MarC-family-NAAT-transporter	unknown	unknown	gnl\|CDD\|236814
NC_021499.1\|WP_016491294.1\|1459867_1460290_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377558
NC_021499.1\|WP_016491307.1\|1472231_1473389_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
NC_021499.1\|WP_016491303.1\|1468622_1469090_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226144
NC_021499.1\|WP_016491293.1\|1457817_1459575_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236043
NC_021499.1\|WP_016491306.1\|1471292_1471784_+\|hypothetical-protein	unknown	unknown	unknown
NC_021499.1\|WP_144276949.1\|1469959_1471110_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_021499.1\|WP_016491310.1\|1475372_1475834_+\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239534
NC_021499.1\|WP_016491308.1\|1473385_1474573_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173841
NC_021499.1\|WP_016491292.1\|1457184_1457805_+\|23S-rRNA-(uridine(2552)-2'-O)-methyltransferase-RlmE	unknown	unknown	gnl\|CDD\|183025
NC_021499.1\|WP_016491296.1\|1461477_1462527_+\|agmatine-deiminase-family-protein	unknown	unknown	gnl\|CDD\|377332
NC_021499.1\|WP_016491301.1\|1466953_1467643_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|173926
NC_021499.1\|WP_016491302.1\|1468380_1468626_-\|hypothetical-protein	unknown	unknown	unknown
NC_021499.1\|WP_016491311.1\|1475971_1477174_+\|acetyl-CoA-C-acyltransferase	unknown	unknown	gnl\|CDD\|180843

Protein	Function_ID	Function_description	E-value
NC_021499.1\|WP_016491312.1\|1477184_1477574_+\|SnoaL-like-domain-containing-protein	gnl\|CDD\|238404	cd00781, ketosteroid_isomerase, ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.	1.31044e-43
NC_021499.1\|WP_016491309.1\|1474587_1475370_+\|SDR-family-oxidoreductase	gnl\|CDD\|236110	PRK07831, PRK07831, SDR family oxidoreductase.	4.70715e-162
NC_021499.1\|WP_016491299.1\|1464617_1465742_+\|agmatine-deiminase-family-protein	gnl\|CDD\|377332	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase. Peptidyl-arginine deiminase (PAD) enzymes catalyze the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (PPAD) appears to be evolutionarily unrelated to mammalian PAD (pfam03068), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs). The predicted catalytic residues in PPAD are Asp130, Asp187, His236, Asp238 and Cys351. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyze the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor.	2.24846e-141
NC_021499.1\|WP_016491295.1\|1460459_1461344_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	6.62865e-68
NC_021499.1\|WP_016491298.1\|1463442_1464546_+\|extracellular-solute-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.03066e-134
NC_021499.1\|WP_016491297.1\|1462531_1463446_+\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NC_021499.1\|WP_016491300.1\|1465972_1466647_-\|MarC-family-NAAT-transporter	gnl\|CDD\|236814	PRK10995, PRK10995, MarC family NAAT transporter.	9.27093e-94
NC_021499.1\|WP_016491294.1\|1459867_1460290_+\|hypothetical-protein	gnl\|CDD\|377558	pfam05818, TraT, Enterobacterial TraT complement resistance protein. The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between an Escherichia coli and its surroundings.	0.000261804
NC_021499.1\|WP_016491307.1\|1472231_1473389_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	1.53062e-66
NC_021499.1\|WP_016491303.1\|1468622_1469090_-\|hypothetical-protein	gnl\|CDD\|226144	COG3617, COG3617, Prophage antirepressor [Transcription].	7.26818e-13
NC_021499.1\|WP_016491293.1\|1457817_1459575_-\|AMP-binding-protein	gnl\|CDD\|236043	PRK07529, PRK07529, AMP-binding domain protein; Validated.	0
NC_021499.1\|WP_144276949.1\|1469959_1471110_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.05756e-74
NC_021499.1\|WP_016491310.1\|1475372_1475834_+\|MaoC-family-dehydratase	gnl\|CDD\|239534	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.	9.72262e-84
NC_021499.1\|WP_016491308.1\|1473385_1474573_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	7.19574e-129
NC_021499.1\|WP_016491292.1\|1457184_1457805_+\|23S-rRNA-(uridine(2552)-2'-O)-methyltransferase-RlmE	gnl\|CDD\|183025	PRK11188, rrmJ, 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE.	7.7233e-107
NC_021499.1\|WP_016491296.1\|1461477_1462527_+\|agmatine-deiminase-family-protein	gnl\|CDD\|377332	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase. Peptidyl-arginine deiminase (PAD) enzymes catalyze the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (PPAD) appears to be evolutionarily unrelated to mammalian PAD (pfam03068), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs). The predicted catalytic residues in PPAD are Asp130, Asp187, His236, Asp238 and Cys351. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyze the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor.	2.62916e-150
NC_021499.1\|WP_016491301.1\|1466953_1467643_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|173926	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransferase, Myristoyl-CoA: protein N-myristoyltransferase, and Acyl-homoserinelactone synthase which have a similar catalytic mechanism but differ in types of acyl groups transferred. Leucyl/phenylalanyl-tRNA-protein transferase and FemXAB nonribosomal peptidyltransferases which catalyze similar peptidyltransferase reactions are also included.	7.27922e-07
NC_021499.1\|WP_016491311.1\|1475971_1477174_+\|acetyl-CoA-C-acyltransferase	gnl\|CDD\|180843	PRK07108, PRK07108, acetyl-CoA C-acyltransferase.	0

>NC_021499.1|WP_016491301.1|1466953_1467643_-|GNAT-family-N-acetyltransferase
MFTLVNLDTSPPESLKSQVLQMVVDYFSDISPVPLTPSNPLYQLYQYVIGFEVHLYLQGMDSAVDSSARLILALDDEDPSQVLGFALYLPSQDDAEACTLAYMAVAASHRRRGIARALLQRVTLHRPHVELACVASKVPAFEAMGFQVLAAQGPQVLLNTRDHRSDGMVAVQDLAPIYQSKEVRQIHAYLVKQHGQKAMREAENKRDRLLDQLAYQAQVLVKERFPTIH
>NC_021499.1|WP_016491300.1|1465972_1466647_-|MarC-family-NAAT-transporter
MGDLFDVVVLGLLALLPLINPPTTVALFLTLSQGLGREEKNQQALRTAINVFVIMTLAFYAGELIMDVFNISIPGLRIAGGGILIIIGSRMLFPQPSQPTTANNDGAQRANFSFIPLAMPSTAGPGTIALIISASATFKYNTTFPAWVLVVAPPLIFLSTALILWGCLRASELIMKMTGPSGIDAISRMMGFLLVCMGVQFAINGSVDIAQTLINNNAQLFRHP
>NC_021499.1|WP_016491299.1|1464617_1465742_+|agmatine-deiminase-family-protein
MSTRRDFIKQLMAASGVGAVASLGLGFGAARVPAALAASWYMPDEHGPQERVILAFAASSKVWQGWEGAVNNCIALLAKTIAKYQPVTVLCRASQLSQAKSKCGTTNIEFLTMPLDDVWVRDYGGCFVVDGAGGLGLVDFNFNGWGGKQTSANDTAVADPLSYEMEAAYIRSALVGEGGGIEVDGHGTAIMTESCWVNSNRNPGLSKAQIEAELKANLGLRKIIWLPGIKDKDITDAHVDFYARFVQPGVVIANLDNDPKSYDYAVTRKHLEILKSATDADGRKLVVHTLPPPLTKRNNQYTQGNPDFAPGYINYLPINGAVIAPQFGDAAADKYCKDLLTRLYPGRVVEQVNIDPIAAGGGGIHCVTKNLPRT
>NC_021499.1|WP_016491298.1|1463442_1464546_+|extracellular-solute-binding-protein
MNAMKKLLIGSLSVVLLGAQLTAQAEEKVLRLYNWADYFAPETLAAFSKETGIQVIYDVMDSSETLEAKMMSGHSGYDLIFPGDTVAERLMRAGALQKLDTAKLEHLGDIEPGLRNLQTKYPYSRHATVPYTWGTIGLTYNQALIEKRLADAPVNSLDMIFKPELAAKFADCGISMIDSPDEVLAVVLNYLGHDPRSSKPDELAEAVALLKGIKPYIRKFQSQPVTQLVNGDICLSLGYSGDMTQAQRAADEAGKPERFQYRIPSEGTTVWMDTMAIPADAQHPEYAYALINFIMRPENMAAISNATGYPTSSAKAKPMVAADMRNNPDIYVDEATYARLIPGKDIPQRDMRARMRAWTTFKTAIHD
>NC_021499.1|WP_016491297.1|1462531_1463446_+|N-carbamoylputrescine-amidase
MSILTVATTQFPCSWDLGKNLDQAEQLVREAAAKGAQLILLQELFATPYFCIEQHHKHLALAEEYGQSRVLKRFANLARELGVVLPLSWFERAGNAYFNSLAVADADGTLLGVYRKTHIPNAIGYQEKEYFSPGDTGFRVWDTAFGRIGVGICWDQWFPETARCLALMGAEVLLYPTAIGSEPGAAELDSRDHWQMAQRGHAAANILPVIAANRVGHEVATTDPELQMRFYGSSFITDHKGKLLAEAGRDDTRVLVQRLDLGLMREERLNWGIYRDRRPEMYGPLLGLDGRQTHVRWQRQGDRT
>NC_021499.1|WP_016491296.1|1461477_1462527_+|agmatine-deiminase-family-protein
MQLNDAQNGWVMPAEWVQHAATWMAFPHNRALWENGWGVTLAEVQVDFARVANAIARFEPVKMVVDPSAVERARELCGPNVELIELAINDSWCRDSGPSFVCHPTLGVAGVNWRFNAWGGKSAFDLDESLARRVLGHLGMECFDTVLTNEGGAIHVDGQGTLITTESVLLNSNRNPGMSKVEMEEIFTRLLGVKKTIWLPGDPDYVTGDMTDGHVDGVCAFARPGALLLDATRDSSSTYAKVARENRRALELATDAQGRRFEMLELYEASEAVDPNAEVFCASYTNFYIANGAIIMPAYGIAADDEAAATLRLAFPGREVVPVQINQLAHGGGGVHCITQQQPAWPLKG
>NC_021499.1|WP_016491295.1|1460459_1461344_-|LysR-family-transcriptional-regulator
MLKHWPPLNALRGFEAAARLGSFHKAAEELHLTQSAISQQIRSLESFLEQPLFFRNGRSVALTDAGFDLLSTTQSLLQQLAVGIRRLDQYRKPNQLVVNTTPAFARHWLVPHLADFHRRHPQVDLWLLTTDETPDMATQTIDIAVRDDLSAQAECSLRVLLEDRLYPACHPGLLELPANARTTLHGEREMDWSHWQVQGGADIGQQSQGLNFSDPGLLLDAASQGLGIALVSQLLAGRARDQALLVPLTEQTVRGPNWSWLVHRDSEGDPLTRSFCTWLVEALEKQAVRQMIPA
>NC_021499.1|WP_016491294.1|1459867_1460290_+|hypothetical-protein
MRKSFSALAFSILASQYVVAGETTNTAVGGGVGGALGSVVGQAVGGSTGAAIGAGLGGAAGGAVSAKDGKKTEAAIGGGLGAAGGQVLGNSVGGATGGAIGAGLGGAAGSAIGNNLADDDDHHDNHKASHKRKHKHKHHD
>NC_021499.1|WP_016491293.1|1457817_1459575_-|AMP-binding-protein
MLPPPRAKTVYELLQASASAHRDKPALTYLSDLSPIEGQQVSYGELLANTHRAARLILDLAGSRKPVVSLLLPNIPQSQYLLWSAACVGVANPLNPLLCEDALYNLMLKANTELIFVLGPMPGSDLWQKTLNVARRLPHQPKCVSVVTAGGDFSFEALLDNYSAAELEAQLQPQADDIAAYFHTGGTTGLPKLACHTHANQVAAAHAYVRCMAASSADVALNGLPLFHVAGALVNSLGGIASGLHMLLPTLAGFRNPEVIQRHWQLVERYGITISGGIPTSVAAMLEVPLGGHDISSLRLMISGGAPVPAALCEQLRAMTGLNLYQAYGMTEAAGVITLPNLECPSIPGSAGHVSGAIEVRIAGNGEICVRGPTVFPGYLGHGENPLEDGWLRTGDLGRLDDQGNLFITGRAKDLIIRSGHNIDPALIENCLESHPQVSLAAAVGMPDEYAGELPVAFVQLRRGSLARVDELLAYALEHMAERPACPKRIFLLEQLPVTAVGKIIKHRLRELAAAHAYNERAEQRGLRLTVEVNQQSDGSLVLNLENVPVEHRGWCAEQAERLGLRWDAGANAPERGIARDARPE
>NC_021499.1|WP_016491292.1|1457184_1457805_+|23S-rRNA-(uridine(2552)-2'-O)-methyltransferase-RlmE
MKRSKSSRRWLDEHVNDPYVKRAQKDGLRSRASYKLIELNEKDKLIRPGMLIMDLGSAPGGWSQVAGRLVGENGRVIASDILPMDPLDNVDFIQGDFTDDAVFQQILDLLAGRQPDLIISDIAPNISGVAAADQASSMYLVELVLDMVRQVLKPNGNFLAKVFQGEGSDEYLKDVRTSFEKVVIRKPEASRPRSREVYLVGKGFKG
>NC_021499.1|WP_016491302.1|1468380_1468626_-|hypothetical-protein
MSEDLDERRLWELVNRLDSRLNTVRVLAEVLLDNAAMREGIPGPYLDNVKESALMEAVIYLSRSNEKDFLRLAKMEKLPLV
>NC_021499.1|WP_016491303.1|1468622_1469090_-|hypothetical-protein
MHDAYTPIVFYHHHQRLRAVMVDNQPWFVAHDFARLIGLPDAQSLLQALEPHEQQTLCLGYTHDFHEDVTAISDIGAYRALFQFGGPEHEAVGRWISAVLVPTLHDYHRVPDAAPRRNELSYEGRRIGVVRWQGEVWVAWRDLPAFMVSGKEASA
>NC_021499.1|WP_144276949.1|1469959_1471110_+|IS3-family-transposase
MSNQRYPEEFKIEAVKQVTERGLPVAEVAARLGMSVHSLYAWIKRYGKPQAQRQQDDDQQAELRRLRAELKRVTEERDIPKKGRRVLCQGVRLKYAFISKLSVEYPVRRLCQTLKVHPSGYYAWLTEPKSVRAKEDQRLLGLIKHAWLESGGVYGYRKIHDDLRELGESCGRHRVARLMRGEGLRSQTGYRRRPGYYGGRPTVASPNRLERQFNVSEPNKVWVTDITYIRTYEGWLYLAVVLDLFSRQVIGWSMKPRMCSDLAIDALLMAVWRRKPKQEVMIHSDQGSQFSSSDWQSFLKANNLISSMSRRGNCHDNAVAESFFQLLKRERIRRKTYGTREEARSDVFDYIEMFYNPKRRHSSAMQLSPVEFEKRYFQSLESV
>NC_021499.1|WP_016491306.1|1471292_1471784_+|hypothetical-protein
MNIDYNVVATGLVAPCAIFIIKTLLDFSLSHYFVKFFHWVPVRGFFRDRPPEISGRWEQIWEAPDSPSFKDVADRHSYTEIKQFGKYLYAEFDAKGRTYCMFATIKNSYVMGEWYDKNDRLAYFGTLQLKIVDAAKLEGLYIGHSSRTSRVESGDWNWRRCAT
>NC_021499.1|WP_016491307.1|1472231_1473389_+|acyl-CoA-dehydrogenase
MDFAFSDEQEMIRESAESFLADVSDSAAVRAAMATALGHDPELWQRVCREMVWPAIHIPEQYGGLGLGFVELAILLEQMGRRLFCSPFFSTACLATPALLLGGNDEQKAHWLPQLAEGSLTATLAYASNNRSGLDAVQASVRAEGAGFVIDGVLRQVVDGHSAGLLIVAARGREGIGLFAVPADTPGISRRLVPTLDQTRKLAEVSFSQVVVPAEARLGAAGQGGELLERVLQLACVALAAEQVGGAQQALDLTLAYTAERQQFGRAIASFQAIKHRAADMMLEVECARSAAWYAACVAEEALAFNGDKRIAAELPLAAALAKARCSEAFFQCAAESIQLHGGVGFTWEYDPHLYFKRARASEALFGAPSWHRERIAAALLGEYP
>NC_021499.1|WP_016491308.1|1473385_1474573_+|acyl-CoA-dehydrogenase
MKISFSEADESFRRDVAGWLADNLRGEFEPLRFRGGPGDEHSFPEERKAWERRLAEGGWTCVGWAPEHGGRGLSISQQVIFHEEYARAGGPGRMGHIGEGLAGPTIAAFGTPEQQRRLLPGIVAGTEFWCQGYSEPAAGSDLANVKTRAVLENGQWRISGQKVWTSLAHESEWCFVIARTTPGSVGHQGLSFLLVPMHQPGITVRPIEQLTGTSEFNEVFFDEALTDANNLLGAPGDGWKIAMALLGFERGVSTLGQQMLFHNELEEIIRIARANGAARDPLLRQRIAEAWGGLRILRYNSLRMLSGPQDGSLRREAMIYKLCWANWHLALGKLAMDVLGPDAELLEGAPYQLGRLQSMFLFSRSDSIYGGTNEIQRNIIAERALGMPREPRVRA
>NC_021499.1|WP_016491309.1|1474587_1475370_+|SDR-family-oxidoreductase
MSIPTYVPGHGLLRGKSVLITAAAGAGIGFSAALRAAEEGCRALMISDIHEGRLQEAAAKIREATGLEQVHGQVCNVTSEEQVQALVAAAERELEGVDVLINNAGLGGSRLLVEMSDEEWHRVLDVTLTGTMRMTRAMLPKMIERQRGVIVNNASVLGWRAQKEQSHYAAAKAGVMALTRCAAVEAAEHGIRINAVSPSIALHDFLKRSAPKELLDQLASREAFGRAAEVWEVANVMMFLASDYSSYMTGEVLSVSSQRA
>NC_021499.1|WP_016491310.1|1475372_1475834_+|MaoC-family-dehydratase
MTMIFETPAALLTRVGEPLGHSDWLTLEQSRIDQFAEATGDHQWIHVDPVRAASGPFGACIAHGYLTLALVNLFLPQIVEVRGIAMGVNYGGERLRFPNVVRAGSRVRGSAQLIAAEEVKGGVQATIRVSVEIEGEERPGCVVDTISRYYPAA
>NC_021499.1|WP_016491311.1|1475971_1477174_+|acetyl-CoA-C-acyltransferase
MKEAVIVSTARTPIGKAFRGAFNDTEAPLLGGHVVREALRRAGIEPGEVDDVIMGAAAQQGTQAYNLGRLCAVAAGLPPSVAGMAVERQCSSGLMSIALAAKSIMCDEIDIAVAGGLESISLVQNKHKNSYRNQSEAVLAQDPRAYIPMIETAEIVAARYGISREAQDAYSYQSQLRTALAQSAGLFEAELAPLTVNKLLLDKATGESRHESVTLRHDECNRADTTLESLGALEPVWQGGQWTGAGRFITAGNASQLSDGASASVLMSAQEAARRGLEPLGIYRGLAVAGCAADEMGIGPVFAIPKLLKRHGLSVEHVGLWELNEAFACQVIHCRDALGIPDERLNVNGGAIAIGHPFGMSGARMVGHALLEGKRRGLRYVVVSMCIGGGMGAAALFEVA
>NC_021499.1|WP_016491312.1|1477184_1477574_+|SnoaL-like-domain-containing-protein
MISPQQVQQTMARYIELVDACDIDGIRALYAENATVEDPVGSPQHVGIDAIDRFYREGLGKANARARQTGPVSASHAGSGAVPFCVDILWNGSPCSIQVIDVMEFDAEGRIRSMKAFWGEANVVPRDQS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2775971 : 2783632

uncultured_Caudovirales_phage(75.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016492449.1\|2775971_2777252_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.7e-98	45.4
WP_016492450.1\|2777373_2778768_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_016492451.1\|2778752_2779766_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_016492452.1\|2779851_2780835_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	6.9e-145	77.6
WP_016492453.1\|2780831_2781167_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	9.1e-41	72.1
WP_016492454.1\|2781163_2781466_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.4e-24	60.0
WP_016492455.1\|2781465_2781822_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	9.7e-33	61.9
WP_016492456.1\|2781823_2782216_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.5e-50	76.7
WP_016492457.1\|2782330_2782999_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	6.8e-96	84.8
WP_016492458.1\|2783422_2783632_-	cold-shock protein	Q9AZD3	Lactococcus_phage	1.7e-16	63.9

DBSCAN-SWA_2

4965666 : 4973879

uncultured_Mediterranean_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041770404.1\|4965666_4968207_+	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	8.8e-27	22.2
WP_016494363.1\|4968347_4968671_+	ferredoxin family protein	NA	NA	NA	NA
WP_010466230.1\|4968944_4969925_+\|transposase	IS5-like element ISPre2 family transposase	A0A077K814	Ralstonia_phage	7.0e-97	59.0
WP_016494364.1\|4970307_4971312_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.2e-35	37.6
WP_016494365.1\|4971418_4972291_-	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	3.9e-06	34.3
WP_016494366.1\|4972452_4973130_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.3e-43	53.7
WP_016494367.1\|4973129_4973879_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.4e-65	51.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_021506

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_021506_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021506_1

68995-69215

Orphan

Consensus_repeat	Method
ATCCACAGCCGTAATCTGTAGTCG	CRISPRCasFinder

4 spacers

The CRISPR arrays of NC_021506_1

>merge|NC_021506|1|68995-69215|CRISPRCasFinder
GGCAGTAGCCGTAATTTGTAGTCGATTGGCGTCCGTTCGCCACGTAGAACAGCCGTAATCTGTAGTCGATAGCGTGGGACAGCTTTGATCCACAGCCGTAATCTGTAGTCGATACCGAAGATAGGGCTGCAAAACTGCCTGGTCATACTCGTCCATGCACAGCCGTAATCTGTAGTCGCATCGAGCTGATGACTGTAAAAATAGCCGTAATCTGTAGTCGA

>NC_021506|1|1|68995-69215|CRISPRCasFinder
GGCAGTAGCCGTAATTTGTAGTCG	ATTGGCGTCCGTTCGCCACG
TAGAACAGCCGTAATCTGTAGTCG	ATAGCGTGGGACAGCTTTG
ATCCACAGCCGTAATCTGTAGTCG	ATACCGAAGATAGGGCTGCAAAACTGCCTGGTCATACTCGTCC
ATGCACAGCCGTAATCTGTAGTCG	CATCGAGCTGATGACTGT
AAAAATAGCCGTAATCTGTAGTCGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_021506.1\|WP_011600754.1\|59770_60889_+\|toxic-anion-resistance-protein	unknown	unknown	gnl\|CDD\|377557
NC_021506.1\|WP_011077922.1\|74504_75494_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319261
NC_021506.1\|WP_011077916.1\|69846_70326_+\|hypothetical-protein	unknown	unknown	unknown
NC_021506.1\|WP_016502327.1\|75559_76186_+\|hypothetical-protein	unknown	unknown	unknown
NC_021506.1\|WP_011077915.1\|67974_68841_-\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NC_021506.1\|WP_011077920.1\|73243_73549_+\|hypothetical-protein	unknown	unknown	unknown
NC_021506.1\|WP_016502324.1\|63513_63789_-\|hypothetical-protein	unknown	unknown	unknown
NC_021506.1\|WP_011077913.1\|63979_64951_-\|replication-terminus-site-binding-protein	unknown	unknown	gnl\|CDD\|368456
NC_021506.1\|WP_016502326.1\|67463_67805_+\|hypothetical-protein	unknown	unknown	unknown
NC_021506.1\|WP_011600755.1\|60888_62277_+\|hypothetical-protein	unknown	unknown	unknown
NC_021506.1\|WP_011077918.1\|71820_72849_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NC_021506.1\|WP_011077917.1\|70527_71661_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NC_021506.1\|WP_011077927.1\|78827_80087_-\|integrase-arm-type-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|271182
NC_021506.1\|WP_028622368.1\|67042_67363_+\|hypothetical-protein	unknown	unknown	unknown
NC_021506.1\|WP_011077911.1\|62366_63335_+\|nuclease	unknown	unknown	gnl\|CDD\|185091
NC_021506.1\|WP_011077926.1\|77428_78727_+\|hypothetical-protein	unknown	unknown	unknown
NC_021506.1\|WP_011077925.1\|76877_77363_+\|hypothetical-protein	unknown	unknown	unknown
NC_021506.1\|WP_011077924.1\|76373_76733_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|320084
NC_021506.1\|WP_033050535.1\|65392_66895_-\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|350194
NC_021506.1\|WP_016502325.1\|65147_65333_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_021506.1\|WP_011600754.1\|59770_60889_+\|toxic-anion-resistance-protein	gnl\|CDD\|377557	pfam05816, TelA, Toxic anion resistance protein (TelA). This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance and plasmid fertility inhibition.	3.92119e-89
NC_021506.1\|WP_011077922.1\|74504_75494_+\|hypothetical-protein	gnl\|CDD\|319261	cd16404, pNOB8_ParB_N_like, pNOB8 ParB-like N-terminal domain, plasmid partitioning system protein domain. archaeal pNOB8 ParB acts in a plasmid partitioning system made up of 3 parts: AspA, ParA motor protein, and ParB, which links ParA to the protein-DNA superhelix. As demonstrated in Sulfolobus, AspA spreads along DNA, which allows ParB binding, and links to the Walker-motif containing ParA motor protein. The Sulfolobus ParB C-terminal domain resembles eukaryotic segregation protein CenpA, and other histones. This family is related to the N-terminal domain of ParB (Spo0J in Bacillus subtilis), a DNA-binding component of the prokaryotic parABS partitioning system and related proteins.	4.83062e-08
NC_021506.1\|WP_011077911.1\|62366_63335_+\|nuclease	gnl\|CDD\|185091	PRK15137, PRK15137, DNA-specific endonuclease I; Provisional.	4.58807e-89
NC_021506.1\|WP_011077915.1\|67974_68841_-\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	3.01121e-65
NC_021506.1\|WP_011077913.1\|63979_64951_-\|replication-terminus-site-binding-protein	gnl\|CDD\|368456	pfam05472, Ter, DNA replicatioN-terminus site-binding protein (Ter protein). This family contains several bacterial Ter proteins. The Ter protein specifically binds to DNA replicatioN-terminus sites on the host and plasmid genome and then blocks progress of the DNA replication fork.	0.000228987
NC_021506.1\|WP_011077924.1\|76373_76733_+\|DNA-binding-protein	gnl\|CDD\|320084	cd16170, MvaT_DBD, DNA-binding domain of the bacterial xenogeneic silencer MvaT. MvaT is a xenogeneic silencer conserved in Pseudomonas which assists in distinguishing foreign from self DNA. It prefers binding to flexible DNA segments with multiple TpA steps, and forms nucleoprotein filaments through cooperative polymerization.	1.08543e-18
NC_021506.1\|WP_033050535.1\|65392_66895_-\|ATP-dependent-helicase	gnl\|CDD\|350194	cd18807, SF1_C_UvrD, C-terminal helicase domain of UvrD family helicases. UvrD is a highly conserved helicase involved in mismatch repair, nucleotide excision repair, and recombinational repair. It plays a critical role in maintaining genomic stability and facilitating DNA lesion repair in many prokaryotic species including Helicobacter pylori and Escherichia coli. This family also includes ATP-dependent helicase/nuclease AddA and helicase/nuclease RecBCD subunit RecB, among others. UvrD family helicases are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	6.88091e-11
NC_021506.1\|WP_011077918.1\|71820_72849_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	2.77912e-31
NC_021506.1\|WP_011077917.1\|70527_71661_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	2.18139e-31
NC_021506.1\|WP_011077927.1\|78827_80087_-\|integrase-arm-type-DNA-binding-domain-containing-protein	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.34141e-48

>NC_021506.1|WP_011077915.1|67974_68841_-|replication-initiation-protein
MSNLPKPAKPEPKPLRVTKSNTLITASYRLTLNEQRLILAAISKLDPRRPMPKKVSVSAVDYSDIYGVQLRHAYEQMKVAADELYERDIKTFDGSGMERKRWVDRAKYLDGEGRVELSFTIHVMPYLTMLYSKVTSYDLRRVACLDSSHSFRLFEMLMQFRKTGWAYIEVESLRVALGLSDAYQRFNNLRQRVIDPAVAELKTKSNLDVSYELRREGRKVIAIKFTFCDLAQLPLNLELDPEDLPPLPEYDPAEESEWLITKPLGELAEAQEAGLLFAVSAEEGEQPD
>NC_021506.1|WP_016502326.1|67463_67805_+|hypothetical-protein
MTAIQLFQQRQSEPVCTDLIQMIRDGMIRRLKRFVVEPYDDGITWGIQTVAIATPDADDGDQFPVVIVDLHEDDQAAMSFALSVFDALKNAGRASGEDVCQWRRSLFTLVPNY
>NC_021506.1|WP_028622368.1|67042_67363_+|hypothetical-protein
MTYNETLASYQRLLEANPGKALQIGDDCYAVLINGTLSGAYATLDGAVDLGTIFHFDREAWDAECECWDGDVSGMQTAFCVATPSLVELPPPPAGNGTPNQGKKEC
>NC_021506.1|WP_033050535.1|65392_66895_-|ATP-dependent-helicase
MNFTHEQGPAINSLARIVKLVAFAGTGKTTTLVGYAKARPQCRLLYLCYNKSVEIAAKQKFPPNVTCKTAHGLAYASIGSKYRHKLTSNLRLTDIARIIGSQNWELVRSVQETLNNYLASADDDIELCHCPVNKLKTERMKRAAGSIVEGARQLWLQMCDIQNEAANITHDGYLKLWALSKPNLRDRYDIALGDEAQDINPVIAGVLAQQAAYGMGVVVCGDGHQMLYRFRGAVDALNATWLDKAEVHYLTQSFRFGSAVAHVANMVLAFKGESRQLAGLGGETRVSKALPADLEHRTVLCRTVVGVIETALANVETGAKIYWVGGIEGYNLQDLEDLHALSKGWRDRVKGKKLLQEYPDYDLYKQIADESQDPEMNRSIKIIEQYSADLPELFAKLRRNAVTDELEATITLSTAHRSKGLEWDAVQLAEDFTFDPFNPENEKEPWIDEMNLLYVACTRAMRVLAVNSTMLEIMKEFVDRRDGRKPNTPMVFRKKQVAAA
>NC_021506.1|WP_016502325.1|65147_65333_-|hypothetical-protein
MPISSDQAALLQQLRNQGYVVLLVEPSETEHINRERLESRLRADAADHIEDLLSLEAVQIR
>NC_021506.1|WP_011077913.1|63979_64951_-|replication-terminus-site-binding-protein
MTDAIVSAYERLVETVEAFNEKWPALVVGGMIWRIPLLTEQRTPSRINVQVLTGTDAIKAAVEALREFERDLGQAPGTVLRLPGYFILSGSILDEGRAVNRCKSELVDAIEAERVFRNVAVSRRSHIMRQALGKNFSLNQLKRAIQVFDAAPRQITFTWAGHTSGKERVTVGHVREVLLAEAHEKSMATGEPVVNSPQWIDLRSIANMAETDMLDVPKPIAPHPRAMLWFSERSRYDAMLHANLPFFVLDGQPAARIVGLKNFDRDSRSAKRPDVKQRLPALPGGRFFVASSTADPVAQEPGAPETPEVLSTYRESVKGVVDQ
>NC_021506.1|WP_016502324.1|63513_63789_-|hypothetical-protein
MMIDGVEKRIEAGVNTALDMVEVLVAAGQPLKAAIATSRILTMEVVRESLAKNLANKSGSVITHTLATTPAHSGPVPAQHTAKTKQHQTVD
>NC_021506.1|WP_011077911.1|62366_63335_+|nuclease
MKSILMMFLAMQMATSHFALASAPTTFEQAKVELRQKVYYDRNTSEAGDLYCGCDWKWVGRSGGRVDFASCGYEVRAQENRAQRIEWEHVLPAYAFGSQRQCWQNGGRKNCIDTDPVFRKMEADMHNLAVSVGEVNADRSNFRYGVLPSTPMQYGACPTRTDFQQRVTEPRDQVKGAVARIYFYMHDRYGLSMSRAQQQLLMAWDRQYPVSAWEQERDRRIARVMGHSNPFVTGERSWNLGMRVKGAGTMAQAIRSEPVQHQVSGGYASSSLSPVIGNRNSNVYHLPVGCPSYEKVGTRNRVEFASAADAEAAGFKRAGNCR
>NC_021506.1|WP_011600755.1|60888_62277_+|hypothetical-protein
MTEPVQLFRLRVDGLVSKENIPLAQLSSLLNDYGVVEDSTLNRLMAGQTERVLGQELELSRQTPEVDPQLYTLLVDGKVAAKDVPDAELDKLLANYGARRKEISRGLVAGKTQRVLGQDLKLLRQPVGQTVHVTAKHEQASNEAKAEPTAQKTHRAQPEPALPAKAPTPFDAPLQELISRAKKLRKGTLIYGGTALGLAVFGGVFYALGIAAEPTTAIDQILVPDAIAKAFQASGHEGGGIGGLMGVESAVDSILNSTALKMISAVAMIAGVGLAVITGRLFNIVPAVMVGMMPHIMGAFLGILDPGTASTASKPSEFYSAVESKNLPTLQRLLSSREDLDEVARAYVLAQASVAGGSSSKWVVLTAKNLREGKIKGDFSVPAGIAYAIEATALGPESPSLSDRAEQHRQSALAEASDWKRNSFWALLLAGLFGVIATGHESIAQIIFRRVRRIGELLTPLR
>NC_021506.1|WP_011600754.1|59770_60889_+|toxic-anion-resistance-protein
MQQEITVTDLATTNTELTPAGLQALGLQEQDIPQIKAVAALIQAENPLSVSQFGREVAEHTSSYADSLLDQVRNSDLDDAGAKLSEVVAVAQSLNVSALSNRRSRIPVIGPLIDKVTLRGKSVMGQFDTTREQIEKLVAEVDQTQAGISARNTGLESMFVAVREEHRLLGIHIAAGKQRLAELQMQVSQLRANIGNDPARLQQVADLDALISNLDKRIGDLTALQQSAMQSLPTIRMIQANNQMLVDKFHTIREITVPAWKRQFMLALTLNEQRNAVQLATKIDDTTNDLLKRNAELLHRNSVETAKANQRLVIDVDTLQKVQATLIQTVEDVIKIQREGVAQRKAAEKEIQGMRLDLQKRLGRTDEVKELH
>NC_021506.1|WP_011077916.1|69846_70326_+|hypothetical-protein
MNTAAFAGVAAYLLSMAVIAPEPVSLTVGVTTIVDVQQHYTIIDKIGTSYTGGPVLNLSEWEVNLEGVTDIQLAFNAEGVLDVATVKADKLHLEEVLSGLRSQLQIGTDESSHGFENITFLSGSTEVVVESHPMDTQFTVNYISADFKRARTDAQKQYA
>NC_021506.1|WP_011077917.1|70527_71661_+|ParA-family-protein
MQQPSEQFEEESVYFTDFSTLLYPPKFAADCFGLTTRRLQDIEDENGLEIRRIARGTVPTRAYTLSDIFDIAAIRRAKGQAKGLPRQVVISTFVPKGGTGKTTVTVNLAIYLQMQGLRILIIDNDPQGDSSSELGYDPDLARSDLESMGIPPERYVEGNLGNLLSPELRGRQFEPLSFEQVIKKPFGENGPHLIPADAYLEDLVVALDAENNMDFWYADWLERARTGEIPGIDTSAYDVILFDNAPTASRLTKNSIVASDFVICPVRMDKFSFRALMRLNEWMVRFAKAYRRSPVVLAIPTMFIRNRKRILNNLVVLNDLFPGRVAEEKLYYSEDYGKALDQGIPLIVWKGATSKTIDSMRSVFSEALQKIREFASQ
>NC_021506.1|WP_011077918.1|71820_72849_+|ParB/RepB/Spo0J-family-partition-protein
MAKSEDFPGKPKDAPTWMSGVKRTPAELPEPNLRVSVREMLAQQQVNEPVAEQAVAGIEGENSQAKVSGKVLETGAANGVIAEISTSNIRVSPFQPRLAFSEAAIEDLANSIASVGLAKPVTVRPIGDGIYELVGGERRWRAHKLLGRETITSYVREMDDALAQILALTDNEGQEALTEYERGKSYAKILDSGGEPSVRALGRRLGVNHSIVSRCLLLMDLPNEVKAILDTNPGLIGGKRAKDFIEFSSKEPELLLRAVTAMRDEQWTQEHALRWLAKEIASRTQQNSSSKFTDTEISGIGRVRVEGKKVELRCEKSVDAKLIAEQFEAFLKTIDRSLIESE
>NC_021506.1|WP_011077920.1|73243_73549_+|hypothetical-protein
MSNSTKHRISLAYEHEGEVRQASAEVNQTKASITFSGLPSVKFQVSLSDPEQVILQLPTDRKGKKPTVSCDISSIPELEAAMDEVRRQGWLGPKVSVSECG
>NC_021506.1|WP_011077922.1|74504_75494_+|hypothetical-protein
MQSYDLEFHDYAQLFPLIIGDDYEALLEDIDVNGQRASIVLYEGKILDGRNRYRVCKDLLIEPRTEEYTGDDALGYVLSLNLYRRQLTVAQRALIAAELSSLRGSSAITVDLEKAAGQELEAAKMAIEEAAKVLGISPRSVSSACKVVRDGTPELLDAVKAGDVSVSAAEQVAKLEKKAQQELCSRGPKAIRKAAKDMREEGRSKPAMPNKPLPLSDKNGLLPPPVPLDDDENEDGASAPDAPANQIAAIEQESDVFYTYERKPAAQLLFEMADAGMQFGREAEGVADDIMNEVEEGLDLQFLAFVVDVAKRLENRVKAKMQARYAEET
>NC_021506.1|WP_016502327.1|75559_76186_+|hypothetical-protein
MQTTQDDTVMDFGPNLFGGEGGSASIPSADDADATNKAQEGTASISHQMTEGCTEENTAEAGGGQAGGSSAPSSSNVAPGVNTQQAATQTKAGKSEVGTKALSSVKAAVKVFESINGFDEQSATQRTVVRDLMLKQSEAMELKLQGKKPPEGEDFDSIAKQLRRENNRLDSLLEGKESLFGKAREAAEIAIENMQGVIAEINRLEEEA
>NC_021506.1|WP_011077924.1|76373_76733_+|DNA-binding-protein
MSLITEYRATEEAIKELQERLEKLSGNEALLKEMEFEKKLRALMSEYGKSLRDIIAILDPDYRKQITHQPGKPRAQRAVKVYRNPNTGELVETKGGNHKTLKEWKQEHGAAVVETWRTQ
>NC_021506.1|WP_011077925.1|76877_77363_+|hypothetical-protein
MDSTENVDERLLAAVMDEAQTDFSIARIAVEKIRQGAESIAAGMHGRNHVKASFEHYDGTPMSPEEALAHQCVHAASIGKSLGQEFLLKAPAPLLEQFSAVAGNRNVADSGAMLAGLLHGFMIAFATKETEERALKAMLEVARICDEANNIRGTSFGQASE
>NC_021506.1|WP_011077926.1|77428_78727_+|hypothetical-protein
MSDDKHVKTEPPRMLFVDEYSNFLGGLNDTLKEELRKVSGVPNATYLVNDGKVFVFDKLVHLVKERQKEQPHAQLQEMARSLTVEELALSLIAEATVSAKEAVEAWGVVPVPYQTETLAAMDTATLESRATGRLILHRPFNARMPGDFQEEGDVKAAFANLLVGGVLPGSGDFTYRGQPMTLRDPLDLALLPARPEIPEGPAAEGWVYTALGNVEFEAGFEPVSEVMFNAVKETEAKWRGDIAHAAKHAQERAAEVWAQAAGLRLETLNDPTDEVPEYGEEEFPQLRALYPELSMLSDGTLYSLFDVFQMECHFINGWAANRDDDFLFYLLGKVADRKNDHDTAKEVGEWVADALLHGATLDAALEIGRSADRYNQAIGKLAHRIADAMRFLAEDKKATDLRGRTITTMGDTFRIGRKYNATAMVVEQKLPF
>NC_021506.1|WP_011077927.1|78827_80087_-|integrase-arm-type-DNA-binding-domain-containing-protein
MSKLTPKFVKDVDQPGSYQDGRGLILRVSATLRKSWVFRYMLAKQRHDLALGTFPALSLRDARLEADKYRLDIARGVDPAAERAKVKAAKASRTTTSHTFRASAERYIRTHSSSWSKKHHQQWQNSLTKHVYPAIGGFRIAEVDTDDILDVLTPIWSKIPVTANRVRNRIELVLDAAKALKLRQGENPARWRGHLDKLLPKQSHTVVPFPSPTPLRTAELLARLDSLDGSAARAVEFAILTATRNQEVSGAQWPEIDWEEKIWYIPAERMKAGKAHRVPLTEQMLEVLRQQVGKHDKWIFLNSWRTGPIPGNAMARVLDQLQVDGVVPHGFRSTFRTWAAEETDHQREVCEMALAHTLNSKVEAAYNRGDLLDKRRALMKDWGDFLVANAPQVQGEVSDLVSELAPDAGSDLAKVLPAA

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Crispr_ID: NC_021506_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021506_2

69437-69604

Orphan

Consensus_repeat	Method
ATCCACAGCCGTAATCTGTAGTCG	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_021506_2

>merge|NC_021506|2|69437-69604|CRISPRCasFinder
TCCAGCAGCCGGAATCTGTAGTCGTTAGACACAGCCCAGGCCCTCCATCCGGCCTGTGGATAACGGCCGCAATCTGTAGTCGTCACAGCCGGAATCTGTAGTCGCTTCAGCCGTAATCCATAGTCGCAAAGCCGGAATGTGTAGTCGCAATGCCGTAATTTGTAGTCG

>NC_021506|2|2|69437-69604|CRISPRCasFinder
TCCAGCAGCCGGAATCTGTAGTCG	TTAGACACAGCCCAGGCCCTCCATCCGGCCTGTG
GATAACGGCCGCAATCTGTAGTCG	TCACAGCCGGAATCTGTAGT
CGCTTCAGCCGTAATCCATAGTCG	CAAAGCCGGAATGTGTAG
TCGCAATGCCGTAATTTGTAGTCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_021506.1\|WP_011600754.1\|59770_60889_+\|toxic-anion-resistance-protein	unknown	unknown	gnl\|CDD\|377557
NC_021506.1\|WP_011077922.1\|74504_75494_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319261
NC_021506.1\|WP_011077916.1\|69846_70326_+\|hypothetical-protein	unknown	unknown	unknown
NC_021506.1\|WP_016502327.1\|75559_76186_+\|hypothetical-protein	unknown	unknown	unknown
NC_021506.1\|WP_011077915.1\|67974_68841_-\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NC_021506.1\|WP_011077920.1\|73243_73549_+\|hypothetical-protein	unknown	unknown	unknown
NC_021506.1\|WP_016502324.1\|63513_63789_-\|hypothetical-protein	unknown	unknown	unknown
NC_021506.1\|WP_011077913.1\|63979_64951_-\|replication-terminus-site-binding-protein	unknown	unknown	gnl\|CDD\|368456
NC_021506.1\|WP_016502326.1\|67463_67805_+\|hypothetical-protein	unknown	unknown	unknown
NC_021506.1\|WP_011600755.1\|60888_62277_+\|hypothetical-protein	unknown	unknown	unknown
NC_021506.1\|WP_011077918.1\|71820_72849_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NC_021506.1\|WP_011077917.1\|70527_71661_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NC_021506.1\|WP_011077927.1\|78827_80087_-\|integrase-arm-type-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|271182
NC_021506.1\|WP_028622368.1\|67042_67363_+\|hypothetical-protein	unknown	unknown	unknown
NC_021506.1\|WP_011077911.1\|62366_63335_+\|nuclease	unknown	unknown	gnl\|CDD\|185091
NC_021506.1\|WP_011077926.1\|77428_78727_+\|hypothetical-protein	unknown	unknown	unknown
NC_021506.1\|WP_011077925.1\|76877_77363_+\|hypothetical-protein	unknown	unknown	unknown
NC_021506.1\|WP_011077924.1\|76373_76733_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|320084
NC_021506.1\|WP_033050535.1\|65392_66895_-\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|350194
NC_021506.1\|WP_016502325.1\|65147_65333_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_021506.1\|WP_011600754.1\|59770_60889_+\|toxic-anion-resistance-protein	gnl\|CDD\|377557	pfam05816, TelA, Toxic anion resistance protein (TelA). This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance and plasmid fertility inhibition.	3.92119e-89
NC_021506.1\|WP_011077922.1\|74504_75494_+\|hypothetical-protein	gnl\|CDD\|319261	cd16404, pNOB8_ParB_N_like, pNOB8 ParB-like N-terminal domain, plasmid partitioning system protein domain. archaeal pNOB8 ParB acts in a plasmid partitioning system made up of 3 parts: AspA, ParA motor protein, and ParB, which links ParA to the protein-DNA superhelix. As demonstrated in Sulfolobus, AspA spreads along DNA, which allows ParB binding, and links to the Walker-motif containing ParA motor protein. The Sulfolobus ParB C-terminal domain resembles eukaryotic segregation protein CenpA, and other histones. This family is related to the N-terminal domain of ParB (Spo0J in Bacillus subtilis), a DNA-binding component of the prokaryotic parABS partitioning system and related proteins.	4.83062e-08
NC_021506.1\|WP_011077911.1\|62366_63335_+\|nuclease	gnl\|CDD\|185091	PRK15137, PRK15137, DNA-specific endonuclease I; Provisional.	4.58807e-89
NC_021506.1\|WP_011077915.1\|67974_68841_-\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	3.01121e-65
NC_021506.1\|WP_011077913.1\|63979_64951_-\|replication-terminus-site-binding-protein	gnl\|CDD\|368456	pfam05472, Ter, DNA replicatioN-terminus site-binding protein (Ter protein). This family contains several bacterial Ter proteins. The Ter protein specifically binds to DNA replicatioN-terminus sites on the host and plasmid genome and then blocks progress of the DNA replication fork.	0.000228987
NC_021506.1\|WP_011077924.1\|76373_76733_+\|DNA-binding-protein	gnl\|CDD\|320084	cd16170, MvaT_DBD, DNA-binding domain of the bacterial xenogeneic silencer MvaT. MvaT is a xenogeneic silencer conserved in Pseudomonas which assists in distinguishing foreign from self DNA. It prefers binding to flexible DNA segments with multiple TpA steps, and forms nucleoprotein filaments through cooperative polymerization.	1.08543e-18
NC_021506.1\|WP_033050535.1\|65392_66895_-\|ATP-dependent-helicase	gnl\|CDD\|350194	cd18807, SF1_C_UvrD, C-terminal helicase domain of UvrD family helicases. UvrD is a highly conserved helicase involved in mismatch repair, nucleotide excision repair, and recombinational repair. It plays a critical role in maintaining genomic stability and facilitating DNA lesion repair in many prokaryotic species including Helicobacter pylori and Escherichia coli. This family also includes ATP-dependent helicase/nuclease AddA and helicase/nuclease RecBCD subunit RecB, among others. UvrD family helicases are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	6.88091e-11
NC_021506.1\|WP_011077918.1\|71820_72849_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	2.77912e-31
NC_021506.1\|WP_011077917.1\|70527_71661_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	2.18139e-31
NC_021506.1\|WP_011077927.1\|78827_80087_-\|integrase-arm-type-DNA-binding-domain-containing-protein	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.34141e-48

>NC_021506.1|WP_011077915.1|67974_68841_-|replication-initiation-protein
MSNLPKPAKPEPKPLRVTKSNTLITASYRLTLNEQRLILAAISKLDPRRPMPKKVSVSAVDYSDIYGVQLRHAYEQMKVAADELYERDIKTFDGSGMERKRWVDRAKYLDGEGRVELSFTIHVMPYLTMLYSKVTSYDLRRVACLDSSHSFRLFEMLMQFRKTGWAYIEVESLRVALGLSDAYQRFNNLRQRVIDPAVAELKTKSNLDVSYELRREGRKVIAIKFTFCDLAQLPLNLELDPEDLPPLPEYDPAEESEWLITKPLGELAEAQEAGLLFAVSAEEGEQPD
>NC_021506.1|WP_016502326.1|67463_67805_+|hypothetical-protein
MTAIQLFQQRQSEPVCTDLIQMIRDGMIRRLKRFVVEPYDDGITWGIQTVAIATPDADDGDQFPVVIVDLHEDDQAAMSFALSVFDALKNAGRASGEDVCQWRRSLFTLVPNY
>NC_021506.1|WP_028622368.1|67042_67363_+|hypothetical-protein
MTYNETLASYQRLLEANPGKALQIGDDCYAVLINGTLSGAYATLDGAVDLGTIFHFDREAWDAECECWDGDVSGMQTAFCVATPSLVELPPPPAGNGTPNQGKKEC
>NC_021506.1|WP_033050535.1|65392_66895_-|ATP-dependent-helicase
MNFTHEQGPAINSLARIVKLVAFAGTGKTTTLVGYAKARPQCRLLYLCYNKSVEIAAKQKFPPNVTCKTAHGLAYASIGSKYRHKLTSNLRLTDIARIIGSQNWELVRSVQETLNNYLASADDDIELCHCPVNKLKTERMKRAAGSIVEGARQLWLQMCDIQNEAANITHDGYLKLWALSKPNLRDRYDIALGDEAQDINPVIAGVLAQQAAYGMGVVVCGDGHQMLYRFRGAVDALNATWLDKAEVHYLTQSFRFGSAVAHVANMVLAFKGESRQLAGLGGETRVSKALPADLEHRTVLCRTVVGVIETALANVETGAKIYWVGGIEGYNLQDLEDLHALSKGWRDRVKGKKLLQEYPDYDLYKQIADESQDPEMNRSIKIIEQYSADLPELFAKLRRNAVTDELEATITLSTAHRSKGLEWDAVQLAEDFTFDPFNPENEKEPWIDEMNLLYVACTRAMRVLAVNSTMLEIMKEFVDRRDGRKPNTPMVFRKKQVAAA
>NC_021506.1|WP_016502325.1|65147_65333_-|hypothetical-protein
MPISSDQAALLQQLRNQGYVVLLVEPSETEHINRERLESRLRADAADHIEDLLSLEAVQIR
>NC_021506.1|WP_011077913.1|63979_64951_-|replication-terminus-site-binding-protein
MTDAIVSAYERLVETVEAFNEKWPALVVGGMIWRIPLLTEQRTPSRINVQVLTGTDAIKAAVEALREFERDLGQAPGTVLRLPGYFILSGSILDEGRAVNRCKSELVDAIEAERVFRNVAVSRRSHIMRQALGKNFSLNQLKRAIQVFDAAPRQITFTWAGHTSGKERVTVGHVREVLLAEAHEKSMATGEPVVNSPQWIDLRSIANMAETDMLDVPKPIAPHPRAMLWFSERSRYDAMLHANLPFFVLDGQPAARIVGLKNFDRDSRSAKRPDVKQRLPALPGGRFFVASSTADPVAQEPGAPETPEVLSTYRESVKGVVDQ
>NC_021506.1|WP_016502324.1|63513_63789_-|hypothetical-protein
MMIDGVEKRIEAGVNTALDMVEVLVAAGQPLKAAIATSRILTMEVVRESLAKNLANKSGSVITHTLATTPAHSGPVPAQHTAKTKQHQTVD
>NC_021506.1|WP_011077911.1|62366_63335_+|nuclease
MKSILMMFLAMQMATSHFALASAPTTFEQAKVELRQKVYYDRNTSEAGDLYCGCDWKWVGRSGGRVDFASCGYEVRAQENRAQRIEWEHVLPAYAFGSQRQCWQNGGRKNCIDTDPVFRKMEADMHNLAVSVGEVNADRSNFRYGVLPSTPMQYGACPTRTDFQQRVTEPRDQVKGAVARIYFYMHDRYGLSMSRAQQQLLMAWDRQYPVSAWEQERDRRIARVMGHSNPFVTGERSWNLGMRVKGAGTMAQAIRSEPVQHQVSGGYASSSLSPVIGNRNSNVYHLPVGCPSYEKVGTRNRVEFASAADAEAAGFKRAGNCR
>NC_021506.1|WP_011600755.1|60888_62277_+|hypothetical-protein
MTEPVQLFRLRVDGLVSKENIPLAQLSSLLNDYGVVEDSTLNRLMAGQTERVLGQELELSRQTPEVDPQLYTLLVDGKVAAKDVPDAELDKLLANYGARRKEISRGLVAGKTQRVLGQDLKLLRQPVGQTVHVTAKHEQASNEAKAEPTAQKTHRAQPEPALPAKAPTPFDAPLQELISRAKKLRKGTLIYGGTALGLAVFGGVFYALGIAAEPTTAIDQILVPDAIAKAFQASGHEGGGIGGLMGVESAVDSILNSTALKMISAVAMIAGVGLAVITGRLFNIVPAVMVGMMPHIMGAFLGILDPGTASTASKPSEFYSAVESKNLPTLQRLLSSREDLDEVARAYVLAQASVAGGSSSKWVVLTAKNLREGKIKGDFSVPAGIAYAIEATALGPESPSLSDRAEQHRQSALAEASDWKRNSFWALLLAGLFGVIATGHESIAQIIFRRVRRIGELLTPLR
>NC_021506.1|WP_011600754.1|59770_60889_+|toxic-anion-resistance-protein
MQQEITVTDLATTNTELTPAGLQALGLQEQDIPQIKAVAALIQAENPLSVSQFGREVAEHTSSYADSLLDQVRNSDLDDAGAKLSEVVAVAQSLNVSALSNRRSRIPVIGPLIDKVTLRGKSVMGQFDTTREQIEKLVAEVDQTQAGISARNTGLESMFVAVREEHRLLGIHIAAGKQRLAELQMQVSQLRANIGNDPARLQQVADLDALISNLDKRIGDLTALQQSAMQSLPTIRMIQANNQMLVDKFHTIREITVPAWKRQFMLALTLNEQRNAVQLATKIDDTTNDLLKRNAELLHRNSVETAKANQRLVIDVDTLQKVQATLIQTVEDVIKIQREGVAQRKAAEKEIQGMRLDLQKRLGRTDEVKELH
>NC_021506.1|WP_011077916.1|69846_70326_+|hypothetical-protein
MNTAAFAGVAAYLLSMAVIAPEPVSLTVGVTTIVDVQQHYTIIDKIGTSYTGGPVLNLSEWEVNLEGVTDIQLAFNAEGVLDVATVKADKLHLEEVLSGLRSQLQIGTDESSHGFENITFLSGSTEVVVESHPMDTQFTVNYISADFKRARTDAQKQYA
>NC_021506.1|WP_011077917.1|70527_71661_+|ParA-family-protein
MQQPSEQFEEESVYFTDFSTLLYPPKFAADCFGLTTRRLQDIEDENGLEIRRIARGTVPTRAYTLSDIFDIAAIRRAKGQAKGLPRQVVISTFVPKGGTGKTTVTVNLAIYLQMQGLRILIIDNDPQGDSSSELGYDPDLARSDLESMGIPPERYVEGNLGNLLSPELRGRQFEPLSFEQVIKKPFGENGPHLIPADAYLEDLVVALDAENNMDFWYADWLERARTGEIPGIDTSAYDVILFDNAPTASRLTKNSIVASDFVICPVRMDKFSFRALMRLNEWMVRFAKAYRRSPVVLAIPTMFIRNRKRILNNLVVLNDLFPGRVAEEKLYYSEDYGKALDQGIPLIVWKGATSKTIDSMRSVFSEALQKIREFASQ
>NC_021506.1|WP_011077918.1|71820_72849_+|ParB/RepB/Spo0J-family-partition-protein
MAKSEDFPGKPKDAPTWMSGVKRTPAELPEPNLRVSVREMLAQQQVNEPVAEQAVAGIEGENSQAKVSGKVLETGAANGVIAEISTSNIRVSPFQPRLAFSEAAIEDLANSIASVGLAKPVTVRPIGDGIYELVGGERRWRAHKLLGRETITSYVREMDDALAQILALTDNEGQEALTEYERGKSYAKILDSGGEPSVRALGRRLGVNHSIVSRCLLLMDLPNEVKAILDTNPGLIGGKRAKDFIEFSSKEPELLLRAVTAMRDEQWTQEHALRWLAKEIASRTQQNSSSKFTDTEISGIGRVRVEGKKVELRCEKSVDAKLIAEQFEAFLKTIDRSLIESE
>NC_021506.1|WP_011077920.1|73243_73549_+|hypothetical-protein
MSNSTKHRISLAYEHEGEVRQASAEVNQTKASITFSGLPSVKFQVSLSDPEQVILQLPTDRKGKKPTVSCDISSIPELEAAMDEVRRQGWLGPKVSVSECG
>NC_021506.1|WP_011077922.1|74504_75494_+|hypothetical-protein
MQSYDLEFHDYAQLFPLIIGDDYEALLEDIDVNGQRASIVLYEGKILDGRNRYRVCKDLLIEPRTEEYTGDDALGYVLSLNLYRRQLTVAQRALIAAELSSLRGSSAITVDLEKAAGQELEAAKMAIEEAAKVLGISPRSVSSACKVVRDGTPELLDAVKAGDVSVSAAEQVAKLEKKAQQELCSRGPKAIRKAAKDMREEGRSKPAMPNKPLPLSDKNGLLPPPVPLDDDENEDGASAPDAPANQIAAIEQESDVFYTYERKPAAQLLFEMADAGMQFGREAEGVADDIMNEVEEGLDLQFLAFVVDVAKRLENRVKAKMQARYAEET
>NC_021506.1|WP_016502327.1|75559_76186_+|hypothetical-protein
MQTTQDDTVMDFGPNLFGGEGGSASIPSADDADATNKAQEGTASISHQMTEGCTEENTAEAGGGQAGGSSAPSSSNVAPGVNTQQAATQTKAGKSEVGTKALSSVKAAVKVFESINGFDEQSATQRTVVRDLMLKQSEAMELKLQGKKPPEGEDFDSIAKQLRRENNRLDSLLEGKESLFGKAREAAEIAIENMQGVIAEINRLEEEA
>NC_021506.1|WP_011077924.1|76373_76733_+|DNA-binding-protein
MSLITEYRATEEAIKELQERLEKLSGNEALLKEMEFEKKLRALMSEYGKSLRDIIAILDPDYRKQITHQPGKPRAQRAVKVYRNPNTGELVETKGGNHKTLKEWKQEHGAAVVETWRTQ
>NC_021506.1|WP_011077925.1|76877_77363_+|hypothetical-protein
MDSTENVDERLLAAVMDEAQTDFSIARIAVEKIRQGAESIAAGMHGRNHVKASFEHYDGTPMSPEEALAHQCVHAASIGKSLGQEFLLKAPAPLLEQFSAVAGNRNVADSGAMLAGLLHGFMIAFATKETEERALKAMLEVARICDEANNIRGTSFGQASE
>NC_021506.1|WP_011077926.1|77428_78727_+|hypothetical-protein
MSDDKHVKTEPPRMLFVDEYSNFLGGLNDTLKEELRKVSGVPNATYLVNDGKVFVFDKLVHLVKERQKEQPHAQLQEMARSLTVEELALSLIAEATVSAKEAVEAWGVVPVPYQTETLAAMDTATLESRATGRLILHRPFNARMPGDFQEEGDVKAAFANLLVGGVLPGSGDFTYRGQPMTLRDPLDLALLPARPEIPEGPAAEGWVYTALGNVEFEAGFEPVSEVMFNAVKETEAKWRGDIAHAAKHAQERAAEVWAQAAGLRLETLNDPTDEVPEYGEEEFPQLRALYPELSMLSDGTLYSLFDVFQMECHFINGWAANRDDDFLFYLLGKVADRKNDHDTAKEVGEWVADALLHGATLDAALEIGRSADRYNQAIGKLAHRIADAMRFLAEDKKATDLRGRTITTMGDTFRIGRKYNATAMVVEQKLPF
>NC_021506.1|WP_011077927.1|78827_80087_-|integrase-arm-type-DNA-binding-domain-containing-protein
MSKLTPKFVKDVDQPGSYQDGRGLILRVSATLRKSWVFRYMLAKQRHDLALGTFPALSLRDARLEADKYRLDIARGVDPAAERAKVKAAKASRTTTSHTFRASAERYIRTHSSSWSKKHHQQWQNSLTKHVYPAIGGFRIAEVDTDDILDVLTPIWSKIPVTANRVRNRIELVLDAAKALKLRQGENPARWRGHLDKLLPKQSHTVVPFPSPTPLRTAELLARLDSLDGSAARAVEFAILTATRNQEVSGAQWPEIDWEEKIWYIPAERMKAGKAHRVPLTEQMLEVLRQQVGKHDKWIFLNSWRTGPIPGNAMARVLDQLQVDGVVPHGFRSTFRTWAAEETDHQREVCEMALAHTLNSKVEAAYNRGDLLDKRRALMKDWGDFLVANAPQVQGEVSDLVSELAPDAGSDLAKVLPAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_021506_1	1.1\|69019\|20\|NC_021506\|CRISPRCasFinder	69019-69038	20	NC_004444	Pseudomonas resinovorans plasmid pCAR1, complete sequence	70285-70304	0	1.0
NC_021506_1	1.1\|69019\|20\|NC_021506\|CRISPRCasFinder	69019-69038	20	NC_021506	Pseudomonas resinovorans NBRC 106553 plasmid pCAR1.3, complete sequence	69019-69038	0	1.0
NC_021506_1	1.1\|69019\|20\|NC_021506\|CRISPRCasFinder	69019-69038	20	NC_011838	Pseudomonas putida plasmid pCAR1.2, complete sequence	70285-70304	0	1.0
NC_021506_1	1.2\|69063\|19\|NC_021506\|CRISPRCasFinder	69063-69081	19	NC_004444	Pseudomonas resinovorans plasmid pCAR1, complete sequence	70329-70347	0	1.0
NC_021506_1	1.2\|69063\|19\|NC_021506\|CRISPRCasFinder	69063-69081	19	NC_021506	Pseudomonas resinovorans NBRC 106553 plasmid pCAR1.3, complete sequence	69063-69081	0	1.0
NC_021506_1	1.2\|69063\|19\|NC_021506\|CRISPRCasFinder	69063-69081	19	NC_011838	Pseudomonas putida plasmid pCAR1.2, complete sequence	70329-70347	0	1.0
NC_021506_1	1.3\|69106\|43\|NC_021506\|CRISPRCasFinder	69106-69148	43	NC_004444	Pseudomonas resinovorans plasmid pCAR1, complete sequence	70372-70414	0	1.0
NC_021506_1	1.3\|69106\|43\|NC_021506\|CRISPRCasFinder	69106-69148	43	NC_021506	Pseudomonas resinovorans NBRC 106553 plasmid pCAR1.3, complete sequence	69106-69148	0	1.0
NC_021506_1	1.3\|69106\|43\|NC_021506\|CRISPRCasFinder	69106-69148	43	NC_011838	Pseudomonas putida plasmid pCAR1.2, complete sequence	70372-70414	0	1.0
NC_021506_2	2.1\|69461\|34\|NC_021506\|CRISPRCasFinder	69461-69494	34	NC_004444	Pseudomonas resinovorans plasmid pCAR1, complete sequence	70727-70760	0	1.0
NC_021506_2	2.1\|69461\|34\|NC_021506\|CRISPRCasFinder	69461-69494	34	NC_021506	Pseudomonas resinovorans NBRC 106553 plasmid pCAR1.3, complete sequence	69461-69494	0	1.0
NC_021506_2	2.1\|69461\|34\|NC_021506\|CRISPRCasFinder	69461-69494	34	NC_011838	Pseudomonas putida plasmid pCAR1.2, complete sequence	70727-70760	0	1.0
NC_021506_2	2.2\|69519\|20\|NC_021506\|CRISPRCasFinder	69519-69538	20	NZ_KY503037	Pseudomonas fluorescens strain PC24 plasmid pPHE24, complete sequence	22374-22393	0	1.0
NC_021506_2	2.2\|69519\|20\|NC_021506\|CRISPRCasFinder	69519-69538	20	NZ_CP039632	Pseudomonas veronii strain Pvy plasmid unnamed, complete sequence	141992-142011	0	1.0
NC_021506_2	2.2\|69519\|20\|NC_021506\|CRISPRCasFinder	69519-69538	20	NC_014124	Pseudomonas putida plasmid pDK1, complete sequence	1546-1565	0	1.0
NC_021506_2	2.2\|69519\|20\|NC_021506\|CRISPRCasFinder	69519-69538	20	NC_008275	Pseudomonas putida MT53 plasmid pWW53, complete sequence	1546-1565	0	1.0
NC_021506_2	2.2\|69519\|20\|NC_021506\|CRISPRCasFinder	69519-69538	20	NC_004444	Pseudomonas resinovorans plasmid pCAR1, complete sequence	70785-70804	0	1.0
NC_021506_2	2.2\|69519\|20\|NC_021506\|CRISPRCasFinder	69519-69538	20	CP034538	Pseudomonas poae strain CAP-2018 plasmid unnamed	106183-106202	0	1.0
NC_021506_2	2.2\|69519\|20\|NC_021506\|CRISPRCasFinder	69519-69538	20	NZ_AY208917	Pseudomonas putida ND6 plasmid pND6-1, complete sequence	4514-4533	0	1.0
NC_021506_2	2.2\|69519\|20\|NC_021506\|CRISPRCasFinder	69519-69538	20	NC_021506	Pseudomonas resinovorans NBRC 106553 plasmid pCAR1.3, complete sequence	69519-69538	0	1.0
NC_021506_2	2.2\|69519\|20\|NC_021506\|CRISPRCasFinder	69519-69538	20	NC_011838	Pseudomonas putida plasmid pCAR1.2, complete sequence	70785-70804	0	1.0
NC_021506_2	2.2\|69519\|20\|NC_021506\|CRISPRCasFinder	69519-69538	20	NZ_MF144194	Pseudomonas aeruginosa strain 1160 plasmid p1160-VIM, complete sequence	204729-204748	0	1.0
NC_021506_2	2.2\|69519\|20\|NC_021506\|CRISPRCasFinder	69519-69538	20	NZ_CP029091	Pseudomonas aeruginosa strain AR441 plasmid unnamed1, complete sequence	52930-52949	1	0.95
NC_021506_2	2.2\|69519\|20\|NC_021506\|CRISPRCasFinder	69519-69538	20	NZ_CP052760	Pseudomonas aeruginosa strain LYT4 plasmid unnamed1, complete sequence	81952-81971	1	0.95
NC_021506_2	2.2\|69519\|20\|NC_021506\|CRISPRCasFinder	69519-69538	20	MN583270	Pseudomonas aeruginosa strain NK546 plasmid pNK546b, complete sequence	175013-175032	1	0.95
NC_021506_2	2.2\|69519\|20\|NC_021506\|CRISPRCasFinder	69519-69538	20	NZ_CP027167	Pseudomonas aeruginosa strain AR_0356 plasmid unnamed3, complete sequence	61880-61899	1	0.95

1. spacer 1.1|69019|20|NC_021506|CRISPRCasFinder matches to NC_004444 (Pseudomonas resinovorans plasmid pCAR1, complete sequence) position: , mismatch: 0, identity: 1.0

attggcgtccgttcgccacg	CRISPR spacer
attggcgtccgttcgccacg	Protospacer
********************

2. spacer 1.1|69019|20|NC_021506|CRISPRCasFinder matches to NC_021506 (Pseudomonas resinovorans NBRC 106553 plasmid pCAR1.3, complete sequence) position: , mismatch: 0, identity: 1.0

attggcgtccgttcgccacg	CRISPR spacer
attggcgtccgttcgccacg	Protospacer
********************

3. spacer 1.1|69019|20|NC_021506|CRISPRCasFinder matches to NC_011838 (Pseudomonas putida plasmid pCAR1.2, complete sequence) position: , mismatch: 0, identity: 1.0

attggcgtccgttcgccacg	CRISPR spacer
attggcgtccgttcgccacg	Protospacer
********************

4. spacer 1.2|69063|19|NC_021506|CRISPRCasFinder matches to NC_004444 (Pseudomonas resinovorans plasmid pCAR1, complete sequence) position: , mismatch: 0, identity: 1.0

atagcgtgggacagctttg	CRISPR spacer
atagcgtgggacagctttg	Protospacer
*******************

5. spacer 1.2|69063|19|NC_021506|CRISPRCasFinder matches to NC_021506 (Pseudomonas resinovorans NBRC 106553 plasmid pCAR1.3, complete sequence) position: , mismatch: 0, identity: 1.0

atagcgtgggacagctttg	CRISPR spacer
atagcgtgggacagctttg	Protospacer
*******************

6. spacer 1.2|69063|19|NC_021506|CRISPRCasFinder matches to NC_011838 (Pseudomonas putida plasmid pCAR1.2, complete sequence) position: , mismatch: 0, identity: 1.0

atagcgtgggacagctttg	CRISPR spacer
atagcgtgggacagctttg	Protospacer
*******************

7. spacer 1.3|69106|43|NC_021506|CRISPRCasFinder matches to NC_004444 (Pseudomonas resinovorans plasmid pCAR1, complete sequence) position: , mismatch: 0, identity: 1.0

ataccgaagatagggctgcaaaactgcctggtcatactcgtcc	CRISPR spacer
ataccgaagatagggctgcaaaactgcctggtcatactcgtcc	Protospacer
*******************************************

8. spacer 1.3|69106|43|NC_021506|CRISPRCasFinder matches to NC_021506 (Pseudomonas resinovorans NBRC 106553 plasmid pCAR1.3, complete sequence) position: , mismatch: 0, identity: 1.0

ataccgaagatagggctgcaaaactgcctggtcatactcgtcc	CRISPR spacer
ataccgaagatagggctgcaaaactgcctggtcatactcgtcc	Protospacer
*******************************************

9. spacer 1.3|69106|43|NC_021506|CRISPRCasFinder matches to NC_011838 (Pseudomonas putida plasmid pCAR1.2, complete sequence) position: , mismatch: 0, identity: 1.0

ataccgaagatagggctgcaaaactgcctggtcatactcgtcc	CRISPR spacer
ataccgaagatagggctgcaaaactgcctggtcatactcgtcc	Protospacer
*******************************************

10. spacer 2.1|69461|34|NC_021506|CRISPRCasFinder matches to NC_004444 (Pseudomonas resinovorans plasmid pCAR1, complete sequence) position: , mismatch: 0, identity: 1.0

ttagacacagcccaggccctccatccggcctgtg	CRISPR spacer
ttagacacagcccaggccctccatccggcctgtg	Protospacer
**********************************

11. spacer 2.1|69461|34|NC_021506|CRISPRCasFinder matches to NC_021506 (Pseudomonas resinovorans NBRC 106553 plasmid pCAR1.3, complete sequence) position: , mismatch: 0, identity: 1.0

ttagacacagcccaggccctccatccggcctgtg	CRISPR spacer
ttagacacagcccaggccctccatccggcctgtg	Protospacer
**********************************

12. spacer 2.1|69461|34|NC_021506|CRISPRCasFinder matches to NC_011838 (Pseudomonas putida plasmid pCAR1.2, complete sequence) position: , mismatch: 0, identity: 1.0

ttagacacagcccaggccctccatccggcctgtg	CRISPR spacer
ttagacacagcccaggccctccatccggcctgtg	Protospacer
**********************************

13. spacer 2.2|69519|20|NC_021506|CRISPRCasFinder matches to NZ_KY503037 (Pseudomonas fluorescens strain PC24 plasmid pPHE24, complete sequence) position: , mismatch: 0, identity: 1.0

tcacagccggaatctgtagt	CRISPR spacer
tcacagccggaatctgtagt	Protospacer
********************

14. spacer 2.2|69519|20|NC_021506|CRISPRCasFinder matches to NZ_CP039632 (Pseudomonas veronii strain Pvy plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcacagccggaatctgtagt	CRISPR spacer
tcacagccggaatctgtagt	Protospacer
********************

15. spacer 2.2|69519|20|NC_021506|CRISPRCasFinder matches to NC_014124 (Pseudomonas putida plasmid pDK1, complete sequence) position: , mismatch: 0, identity: 1.0

tcacagccggaatctgtagt	CRISPR spacer
tcacagccggaatctgtagt	Protospacer
********************

16. spacer 2.2|69519|20|NC_021506|CRISPRCasFinder matches to NC_008275 (Pseudomonas putida MT53 plasmid pWW53, complete sequence) position: , mismatch: 0, identity: 1.0

tcacagccggaatctgtagt	CRISPR spacer
tcacagccggaatctgtagt	Protospacer
********************

17. spacer 2.2|69519|20|NC_021506|CRISPRCasFinder matches to NC_004444 (Pseudomonas resinovorans plasmid pCAR1, complete sequence) position: , mismatch: 0, identity: 1.0

tcacagccggaatctgtagt	CRISPR spacer
tcacagccggaatctgtagt	Protospacer
********************

18. spacer 2.2|69519|20|NC_021506|CRISPRCasFinder matches to CP034538 (Pseudomonas poae strain CAP-2018 plasmid unnamed) position: , mismatch: 0, identity: 1.0

tcacagccggaatctgtagt	CRISPR spacer
tcacagccggaatctgtagt	Protospacer
********************

19. spacer 2.2|69519|20|NC_021506|CRISPRCasFinder matches to NZ_AY208917 (Pseudomonas putida ND6 plasmid pND6-1, complete sequence) position: , mismatch: 0, identity: 1.0

tcacagccggaatctgtagt	CRISPR spacer
tcacagccggaatctgtagt	Protospacer
********************

20. spacer 2.2|69519|20|NC_021506|CRISPRCasFinder matches to NC_021506 (Pseudomonas resinovorans NBRC 106553 plasmid pCAR1.3, complete sequence) position: , mismatch: 0, identity: 1.0

tcacagccggaatctgtagt	CRISPR spacer
tcacagccggaatctgtagt	Protospacer
********************

21. spacer 2.2|69519|20|NC_021506|CRISPRCasFinder matches to NC_011838 (Pseudomonas putida plasmid pCAR1.2, complete sequence) position: , mismatch: 0, identity: 1.0

tcacagccggaatctgtagt	CRISPR spacer
tcacagccggaatctgtagt	Protospacer
********************

22. spacer 2.2|69519|20|NC_021506|CRISPRCasFinder matches to NZ_MF144194 (Pseudomonas aeruginosa strain 1160 plasmid p1160-VIM, complete sequence) position: , mismatch: 0, identity: 1.0

tcacagccggaatctgtagt	CRISPR spacer
tcacagccggaatctgtagt	Protospacer
********************

23. spacer 2.2|69519|20|NC_021506|CRISPRCasFinder matches to NZ_CP029091 (Pseudomonas aeruginosa strain AR441 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.95

tcacagccggaatctgtagt	CRISPR spacer
acacagccggaatctgtagt	Protospacer
 *******************

24. spacer 2.2|69519|20|NC_021506|CRISPRCasFinder matches to NZ_CP052760 (Pseudomonas aeruginosa strain LYT4 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.95

tcacagccggaatctgtagt	CRISPR spacer
acacagccggaatctgtagt	Protospacer
 *******************

25. spacer 2.2|69519|20|NC_021506|CRISPRCasFinder matches to MN583270 (Pseudomonas aeruginosa strain NK546 plasmid pNK546b, complete sequence) position: , mismatch: 1, identity: 0.95

tcacagccggaatctgtagt	CRISPR spacer
acacagccggaatctgtagt	Protospacer
 *******************

26. spacer 2.2|69519|20|NC_021506|CRISPRCasFinder matches to NZ_CP027167 (Pseudomonas aeruginosa strain AR_0356 plasmid unnamed3, complete sequence) position: , mismatch: 1, identity: 0.95

tcacagccggaatctgtagt	CRISPR spacer
acacagccggaatctgtagt	Protospacer
 *******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 57034

Ralstonia_phage(25.0%)

integrase,transposase

attL 18966:18980|attR 52898:52912

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016502302.1\|77_1097_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_016502303.1\|1107_2019_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_011077858.1\|2083_3244_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010466230.1\|3403_4384_-\|transposase	IS5-like element ISPre2 family transposase	A0A077K814	Ralstonia_phage	7.0e-97	59.0
WP_011077859.1\|4542_5568_-	anthranilate 1,2-dioxygenase electron transfer component AntC	NA	NA	NA	NA
WP_011077860.1\|5586_6078_-	anthranilate 1,2-dioxygenase small subunit	NA	NA	NA	NA
WP_011077861.1\|6080_7484_-	anthranilate 1,2-dioxygenase large subunit	NA	NA	NA	NA
WP_011077862.1\|7825_8806_-\|transposase	IS5-like element ISPre1 family transposase	A0A077K814	Ralstonia_phage	1.2e-96	58.3
WP_011077863.1\|9058_10315_+	OprD family porin	NA	NA	NA	NA
WP_016502306.1\|10713_11652_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_011077865.1\|11655_12648_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_011077866.1\|13116_14352_-	dienelactone hydrolase family protein	S4VXZ7	Pandoravirus	4.8e-10	33.6
WP_011077867.1\|14398_15208_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_016502307.1\|15204_15798_-	cysteine hydrolase	NA	NA	NA	NA
WP_011077868.1\|15797_16331_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA
WP_011077869.1\|16320_17652_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_011077870.1\|17702_18647_-	oxidoreductase	NA	NA	NA	NA
WP_011077871.1\|18886_19270_+	DUF5329 domain-containing protein	NA	NA	NA	NA
18966:18980	attL	NA	NA	NA	NA
WP_016502310.1\|22458_23421_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_011077874.1\|23435_23927_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_011077875.1\|23952_24441_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_011077876.1\|24466_24979_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_016502311.1\|24975_25257_+	hypothetical protein	NA	NA	NA	NA
WP_011077862.1\|25352_26333_+\|transposase	IS5-like element ISPre1 family transposase	A0A077K814	Ralstonia_phage	1.2e-96	58.3
WP_019366953.1\|28468_29641_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_011077879.1\|29698_29971_+	subunit of meta-cleavage enzyme	NA	NA	NA	NA
WP_011077880.1\|29970_30780_+	AmmeMemoRadiSam system protein B	NA	NA	NA	NA
WP_011077881.1\|30769_31642_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_011077882.1\|31662_31986_+	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA
WP_011077883.1\|32019_32337_+	hypothetical protein	NA	NA	NA	NA
WP_011077884.1\|32366_33356_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_011077885.1\|33379_34162_+	2-oxopent-4-enoate hydratase	NA	NA	NA	NA
WP_011077886.1\|34273_34714_+	hypothetical protein	NA	NA	NA	NA
WP_011077887.1\|35099_35843_+	hypothetical protein	NA	NA	NA	NA
WP_011077888.1\|35796_36744_+	acetaldehyde dehydrogenase (acetylating)	E5EQ71	Micromonas_sp._RCC1109_virus	2.1e-37	35.9
WP_019367563.1\|36752_37763_+	4-hydroxy-2-oxovalerate aldolase	E5EQ69	Micromonas_sp._RCC1109_virus	9.2e-44	30.8
WP_016502314.1\|38063_38453_-	hypothetical protein	NA	NA	NA	NA
WP_011077890.1\|38433_39231_-	hypothetical protein	NA	NA	NA	NA
WP_016502315.1\|39239_39650_-	helix-turn-helix domain-containing protein	A4JWR8	Burkholderia_virus	1.3e-12	36.5
WP_016502316.1\|39765_39972_+	DNA-binding protein	NA	NA	NA	NA
WP_011077862.1\|40265_41246_+\|transposase	IS5-like element ISPre1 family transposase	A0A077K814	Ralstonia_phage	1.2e-96	58.3
WP_144277083.1\|41368_42394_+	EAL domain-containing protein	NA	NA	NA	NA
WP_011077892.1\|42644_42914_+	hypothetical protein	NA	NA	NA	NA
WP_016502317.1\|43057_43333_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_016502318.1\|43332_43605_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_016502319.1\|43618_44032_-	hypothetical protein	NA	NA	NA	NA
WP_011077894.1\|44038_44779_-	DUF2807 domain-containing protein	NA	NA	NA	NA
WP_011077895.1\|45010_45571_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.3e-55	94.4
WP_013100941.1\|46932_47682_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	4.5e-80	59.8
WP_011077898.1\|47569_49249_-\|transposase	IS21-like element IS1162 family transposase	K4I413	Acidithiobacillus_phage	1.1e-163	56.6
WP_011077899.1\|49455_50703_-	three-Cys-motif partner protein TcmP	NA	NA	NA	NA
WP_011077900.1\|50722_51466_-	phage Gp37/Gp68 family protein	A0A088F7U1	Mycobacterium_phage	4.7e-61	44.2
WP_011077901.1\|51495_52467_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_011077902.1\|52647_53649_+	DNA-binding protein	NA	NA	NA	NA
52898:52912	attR	NA	NA	NA	NA
WP_016502320.1\|53686_54073_-	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_011077903.1\|54162_54552_+	IS66 family insertion sequence hypothetical protein	Q76S41	Shigella_phage	1.5e-05	32.2
WP_011077904.1\|54548_54893_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.3e-37	67.3
WP_011077905.1\|54928_56437_+\|transposase	IS66-like element ISPre3 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.7e-145	54.2
WP_011077906.1\|56440_57034_+	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	1.9e-20	35.2

DBSCAN-SWA_2

65392 : 75494

Escherichia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033050535.1\|65392_66895_-	ATP-dependent helicase	K7QLT2	Escherichia_phage	2.6e-50	32.6
WP_028622368.1\|67042_67363_+	hypothetical protein	NA	NA	NA	NA
WP_016502326.1\|67463_67805_+	hypothetical protein	NA	NA	NA	NA
WP_011077915.1\|67974_68841_-	replication initiation protein	A0A218MNI2	uncultured_virus	5.3e-24	32.2
WP_011077916.1\|69846_70326_+	hypothetical protein	NA	NA	NA	NA
WP_011077917.1\|70527_71661_+	ParA family protein	Q7Y3Y6	Yersinia_phage	3.1e-08	37.1
WP_011077918.1\|71820_72849_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_011077920.1\|73243_73549_+	hypothetical protein	NA	NA	NA	NA
WP_011077922.1\|74504_75494_+	hypothetical protein	A0A1B1IPY1	uncultured_Mediterranean_phage	2.0e-19	37.4

DBSCAN-SWA_3

78827 : 84413

Ralstonia_phage(20.0%)

integrase

attL 77069:77082|attR 81307:81320

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
77069:77082	attL	NA	NA	NA	NA
WP_011077927.1\|78827_80087_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A077KET4	Ralstonia_phage	1.3e-79	42.7
WP_011077928.1\|80083_80491_-	hypothetical protein	NA	NA	NA	NA
WP_016502328.1\|80811_81609_-	serine/threonine protein phosphatase	A0A291L9W7	Bordetella_phage	2.1e-43	44.5
81307:81320	attR	NA	NA	NA	NA
WP_016502329.1\|81627_82305_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011077931.1\|82330_82720_-	hypothetical protein	NA	NA	NA	NA
WP_011077932.1\|82867_83707_-	SAM-dependent DNA methyltransferase	A0A2K9V411	Faecalibacterium_phage	2.7e-33	34.4
WP_011077933.1\|83774_84125_-	hypothetical protein	A0A2H4P7P5	Pseudomonas_phage	1.3e-21	49.6
WP_011077934.1\|84137_84413_-	hypothetical protein	A4PE68	Ralstonia_virus	1.3e-29	63.3

DBSCAN-SWA_4

88611 : 98854

uncultured_Caudovirales_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011077943.1\|88611_89355_-	hypothetical protein	A0A2H4J7T1	uncultured_Caudovirales_phage	3.5e-48	42.6
WP_011077944.1\|89625_90156_-	hypothetical protein	NA	NA	NA	NA
WP_011077945.1\|90264_91146_-	prohibitin family protein	A0A1S6UA41	Serratia_phage	8.0e-60	58.6
WP_016502335.1\|91428_91665_-	hypothetical protein	NA	NA	NA	NA
WP_011077946.1\|92120_93056_+	signal peptide peptidase SppA	A4JX00	Burkholderia_virus	2.7e-13	28.6
WP_011077947.1\|93122_94124_-	nucleoid-associated protein YejK	L7TI92	Pseudomonas_virus	2.7e-152	78.6
WP_016971295.1\|94149_94698_-	hypothetical protein	NA	NA	NA	NA
WP_011077949.1\|94956_96447_+	DEAD/DEAH box helicase	A0A0H5ARP5	Pseudomonas_phage	9.1e-141	51.2
WP_011077950.1\|96542_96818_+	HU family DNA-binding protein	A0A2H4PAM3	Aphanizomenon_phage	1.6e-19	53.3
WP_011077951.1\|96938_97391_+	hypothetical protein	NA	NA	NA	NA
WP_011077952.1\|97387_98854_+	ATP-dependent helicase	A0A1Q1N983	Escherichia_phage	6.2e-49	31.1

DBSCAN-SWA_5

101935 : 102904

Rhizobium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011077956.1\|101935_102904_+	AAA domain-containing protein	L7TKP0	Rhizobium_phage	3.7e-26	33.7

DBSCAN-SWA_6

113024 : 121770

Acidithiobacillus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144277085.1\|113024_113852_-	hypothetical protein	R9TPP4	Aeromonas_phage	2.3e-24	30.4
WP_011077972.1\|114342_115191_-	DsbA family protein	NA	NA	NA	NA
WP_011077973.1\|115197_115755_-	hypothetical protein	NA	NA	NA	NA
WP_011077974.1\|116177_116690_+	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	1.6e-44	69.4
WP_016502344.1\|116757_117849_+	recombinase RecT	F1C5B8	Cronobacter_phage	1.1e-39	41.3
WP_011077862.1\|117931_118912_+\|transposase	IS5-like element ISPre1 family transposase	A0A077K814	Ralstonia_phage	1.2e-96	58.3
WP_041771204.1\|119479_120994_+\|transposase	IS21-like element ISPre4 family transposase	K4I413	Acidithiobacillus_phage	2.7e-148	53.4
WP_011077977.1\|121014_121770_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.3e-71	54.4

DBSCAN-SWA_7

140554 : 143426

Stx2-converting_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011077903.1\|140554_140944_+	IS66 family insertion sequence hypothetical protein	Q76S41	Shigella_phage	1.5e-05	32.2
WP_011077904.1\|140940_141285_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.3e-37	67.3
WP_011077905.1\|141320_142829_+\|transposase	IS66-like element ISPre3 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.7e-145	54.2
WP_011077906.1\|142832_143426_+	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	1.9e-20	35.2

DBSCAN-SWA_8

151568 : 155708

Clostridioides_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_126588711.1\|151568_152288_+	NERD domain-containing protein	A0A2R2ZH57	Clostridioides_phage	7.8e-13	37.0
WP_011078000.1\|152520_153207_-	DUF1845 domain-containing protein	NA	NA	NA	NA
WP_011078001.1\|153616_153925_+	hypothetical protein	NA	NA	NA	NA
WP_011078002.1\|153921_154545_+	hypothetical protein	NA	NA	NA	NA
WP_011078003.1\|154592_155708_+	DNA primase	A0A0H5AWB1	Pseudomonas_phage	5.1e-27	31.6

DBSCAN-SWA_9

167782 : 171077

Pseudomonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041771214.1\|167782_168460_+	DUF2786 domain-containing protein	Q5ZR11	Pseudomonas_phage	2.6e-26	36.2
WP_011078017.1\|168780_169410_+	hypothetical protein	A0A2H4JFQ3	uncultured_Caudovirales_phage	1.2e-28	31.6
WP_011078018.1\|169483_169696_+	hypothetical protein	NA	NA	NA	NA
WP_011078019.1\|169598_171077_+	exodeoxyribonuclease VII large subunit	M1NLU2	Moumouvirus	5.9e-15	31.6

DBSCAN-SWA_10

179488 : 188822

Salmonella_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011078028.1\|179488_180061_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.2e-59	100.0
WP_011078029.1\|180286_181945_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	5.6e-22	36.4
WP_011078030.1\|182112_183363_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	2.2e-47	46.5
WP_011078031.1\|183705_184149_+	hypothetical protein	A0A1Y0SX42	Pseudomonas_phage	1.1e-12	55.4
WP_011078033.1\|184571_185021_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_011078034.1\|185017_185455_+	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_011078035.1\|185807_188822_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	2.6e-70	24.9

DBSCAN-SWA_11

193350 : 194340

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016502360.1\|193350_194340_+	aerotaxis receptor	A0A2H4J162	uncultured_Caudovirales_phage	9.7e-22	35.2

DBSCAN-SWA_12

197617 : 198304

Anomala_cuprea_entomopoxvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011078047.1\|197617_198304_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	3.6e-07	24.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_021499

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_021506

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection