CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009914	Mycobacterium sp. VKM Ac-1817D, complete genome	0 crisprs	csa3,WYL,cas3,cas4,DEDDh,DinG	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5668223 : 5711243

Gordonia_phage(16.67%)

protease,capsid,transposase,holin,integrase

attL 5666240:5666277|attR 5675907:5675944

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5666240:5666277	attL	NA	NA	NA	NA
WP_003882584.1\|5668223_5669327_-\|capsid	phage major capsid protein	A0A162E105	Gordonia_phage	4.5e-20	59.6
WP_003882585.1\|5669482_5669983_-	hypothetical protein	NA	NA	NA	NA
WP_003882587.1\|5669997_5670264_-	hypothetical protein	NA	NA	NA	NA
WP_003882589.1\|5670260_5670554_-	hypothetical protein	NA	NA	NA	NA
WP_003882590.1\|5670550_5672326_-	hypothetical protein	A0A076GE28	Mycobacterium_phage	3.3e-44	32.6
WP_003882591.1\|5672322_5672679_-	DUF2742 domain-containing protein	NA	NA	NA	NA
WP_003882592.1\|5672678_5673365_-	hypothetical protein	NA	NA	NA	NA
WP_003882593.1\|5673361_5673667_-	hypothetical protein	NA	NA	NA	NA
WP_038565518.1\|5674090_5674660_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_038565521.1\|5674652_5675828_+\|integrase	integrase	A0A1D8EX55	Mycobacterium_phage	3.2e-141	65.7
WP_003882597.1\|5676039_5677248_-	DNA polymerase III subunit delta'	D9ZNI9	Clostridium_phage	2.4e-06	33.7
5675907:5675944	attR	NA	NA	NA	NA
WP_038567461.1\|5677330_5678959_+	adenylate/guanylate cyclase domain-containing protein	A0A1B1IWY2	uncultured_Mediterranean_phage	5.7e-19	33.3
WP_003882599.1\|5679055_5681881_-	type I DNA topoisomerase	J3E777	Acanthamoeba_polyphaga_lentillevirus	4.8e-98	32.7
WP_003882600.1\|5681984_5682578_-	hypothetical protein	NA	NA	NA	NA
WP_003882601.1\|5682674_5682878_-	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	1.5e-14	56.2
WP_003882602.1\|5683175_5685530_+	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	4.7e-06	28.4
WP_003882603.1\|5685807_5686833_+	hypothetical protein	NA	NA	NA	NA
WP_080596755.1\|5686843_5687299_-	hypothetical protein	NA	NA	NA	NA
WP_071533381.1\|5687186_5687471_-	pilus biosynthesis protein TadE	NA	NA	NA	NA
WP_003882606.1\|5687521_5687725_-	DUF4244 domain-containing protein	NA	NA	NA	NA
WP_003882607.1\|5687752_5688334_-	type II secretion system protein F	NA	NA	NA	NA
WP_003882608.1\|5688330_5689119_-	membrane protein	NA	NA	NA	NA
WP_003882609.1\|5689115_5689292_-	hypothetical protein	NA	NA	NA	NA
WP_003882610.1\|5689466_5690177_+	hypothetical protein	NA	NA	NA	NA
WP_003882611.1\|5690238_5691483_+	ImmA/IrrE family metallo-endopeptidase	A0A0U4JD08	Gordonia_phage	1.7e-15	35.8
WP_003882612.1\|5691508_5692702_+\|transposase	transposase	U3PJ31	Staphylococcus_phage	4.5e-05	26.9
WP_003882613.1\|5692688_5694920_+\|transposase	transposase	NA	NA	NA	NA
WP_003882614.1\|5694916_5695327_+	hypothetical protein	NA	NA	NA	NA
WP_003882615.1\|5695323_5695983_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003882616.1\|5696126_5696639_+	PaaI family thioesterase	NA	NA	NA	NA
WP_048895662.1\|5696668_5697259_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003882618.1\|5697332_5697758_+	hypothetical protein	NA	NA	NA	NA
WP_003882619.1\|5697882_5700969_+	MMPL family transporter	NA	NA	NA	NA
WP_003882620.1\|5701068_5702139_-	conjugal transfer protein	NA	NA	NA	NA
WP_003882621.1\|5702135_5703215_-	ATPase AAA	NA	NA	NA	NA
WP_074405352.1\|5703424_5703604_+	hypothetical protein	NA	NA	NA	NA
WP_038565529.1\|5703622_5704492_+	HAD-IB family hydrolase	NA	NA	NA	NA
WP_038565532.1\|5704920_5705661_-	hypothetical protein	NA	NA	NA	NA
WP_003883798.1\|5705787_5707749_+	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	3.9e-83	40.3
WP_051018998.1\|5707760_5708426_-	hypothetical protein	NA	NA	NA	NA
WP_003883800.1\|5708571_5709093_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_003883801.1\|5709092_5710052_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_003883802.1\|5710052_5711243_-\|protease	acid resistance periplasmic serine protease MarP	B4UTS4	Rhizobium_phage	1.4e-06	31.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage