CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP053207	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1C, complete sequence	0 crisprs	NA	1
NZ_CP053208	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence	0 crisprs	csa3,DEDDh	0
NZ_CP053205	Rhizobium leguminosarum bv. trifolii TA1 chromosome, complete genome	0 crisprs	csa3,cas3,WYL,DEDDh	7
NZ_CP053209	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1A, complete sequence	0 crisprs	RT	3
NZ_CP053206	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence	0 crisprs	WYL,csa3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

204775 : 223444

Leptospira_phage(100.0%)

integrase,transposase

attL 204725:204784|attR 223436:224242

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
204725:204784	attL	NA	NA	NA	NA
WP_027688364.1\|204775_205480_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_027688513.1\|206396_207374_-	oxidoreductase	NA	NA	NA	NA
WP_027688512.1\|207412_208156_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_027688511.1\|208159_209209_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_018496486.1\|211426_211768_+	hypothetical protein	NA	NA	NA	NA
WP_027688508.1\|214200_214434_-	hypothetical protein	NA	NA	NA	NA
WP_027688506.1\|214762_215788_-	PAS domain S-box protein	NA	NA	NA	NA
WP_027688505.1\|215997_217035_+	PAS domain-containing protein	NA	NA	NA	NA
WP_027688504.1\|217471_218332_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	4.0e-32	33.7
WP_130697937.1\|218345_219512_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_130663640.1\|220886_221048_-\|transposase	transposase	NA	NA	NA	NA
WP_165417479.1\|222066_222354_-\|transposase	transposase	NA	NA	NA	NA
WP_027688364.1\|222739_223444_+\|transposase	IS6 family transposase	NA	NA	NA	NA
223436:224242	attR	NA	NA	NA	NA

DBSCAN-SWA_2

226767 : 302085

Paenibacillus_phage(12.5%)

tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_130663641.1\|226767_227519_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.1e-24	42.1
WP_027688359.1\|228512_229271_+	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_027688360.1\|229281_230169_+	GHMP kinase	NA	NA	NA	NA
WP_027688361.1\|230350_230989_+	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_042940979.1\|231210_232905_+	asparagine synthase	NA	NA	NA	NA
WP_027688493.1\|235081_235864_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_027688492.1\|235860_236730_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_130663643.1\|236794_237892_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_027688490.1\|238192_238999_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_027688489.1\|238988_240467_+	alkaline phosphatase family protein	NA	NA	NA	NA
WP_027688486.1\|244277_245381_-	hypothetical protein	NA	NA	NA	NA
WP_027688485.1\|245392_246382_-	ATP-binding protein	A0A125SJ49	Acidianus_tailed_spindle_virus	2.2e-13	33.6
WP_051320207.1\|246939_247662_+\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_085065864.1\|249141_249513_-	hypothetical protein	NA	NA	NA	NA
WP_027688482.1\|251788_252769_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_027688480.1\|253725_255549_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.3e-32	30.5
WP_051320205.1\|256540_256834_+	hypothetical protein	NA	NA	NA	NA
WP_027688477.1\|260210_261641_-	polygalacturonase	NA	NA	NA	NA
WP_027688449.1\|263391_263688_-	AAA family ATPase	NA	NA	NA	NA
WP_027689782.1\|264242_264914_+	hypothetical protein	NA	NA	NA	NA
WP_027689783.1\|265038_265755_+	hypothetical protein	NA	NA	NA	NA
WP_027689785.1\|266388_267132_-	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA
WP_130661510.1\|267476_268193_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_027688479.1\|268566_269427_+	S49 family peptidase	A0A126DIM0	Acinetobacter_phage	2.7e-12	28.8
WP_130661510.1\|270666_271383_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_085065862.1\|272034_272265_-	hypothetical protein	NA	NA	NA	NA
WP_085065861.1\|272278_272494_-	hypothetical protein	NA	NA	NA	NA
WP_085065860.1\|273075_274854_+	insulinase family protein	NA	NA	NA	NA
WP_027688469.1\|283826_284954_-	ferritin-like protein	NA	NA	NA	NA
WP_027688466.1\|286907_287135_-	hypothetical protein	NA	NA	NA	NA
WP_027688465.1\|287593_289150_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_017958612.1\|289860_290019_-	hypothetical protein	NA	NA	NA	NA
WP_027688463.1\|290330_290897_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_027688462.1\|291463_292159_+	hypothetical protein	NA	NA	NA	NA
WP_027688461.1\|292207_292867_+\|tail	tail fiber protein	A0A291LA10	Bordetella_phage	2.9e-14	38.5
WP_130683385.1\|293455_294645_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.7e-52	44.4
WP_027688458.1\|294899_295643_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_130661517.1\|296160_296427_-	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_027688456.1\|297363_298014_+	porin family protein	NA	NA	NA	NA
WP_027688455.1\|299584_300958_-\|transposase	ISNCY family transposase	A1YTJ2	Porcine_endogenous_retrovirus	6.7e-05	27.3
WP_018494608.1\|301083_302085_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.7e-42	34.7

DBSCAN-SWA_3

387949 : 437487

Pseudomonas_phage(25.0%)

integrase,protease,transposase

attL 379951:379972|attR 437236:437257

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
379951:379972	attL	NA	NA	NA	NA
WP_018483788.1\|387949_388318_-\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	1.8e-05	38.8
WP_027688389.1\|389096_390026_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_018068071.1\|391411_391714_+	hypothetical protein	NA	NA	NA	NA
WP_027688386.1\|392146_392857_+	hypothetical protein	NA	NA	NA	NA
WP_027688385.1\|393282_395100_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA
WP_027688384.1\|395101_396085_+	glycine oxidase ThiO	NA	NA	NA	NA
WP_018068076.1\|396068_396266_+	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_027688383.1\|396269_397043_+	thiazole synthase	NA	NA	NA	NA
WP_157629617.1\|397358_397520_-	hypothetical protein	NA	NA	NA	NA
WP_027688382.1\|397574_397922_+	hypothetical protein	NA	NA	NA	NA
WP_018486537.1\|398185_398413_-	hypothetical protein	NA	NA	NA	NA
WP_027688381.1\|398766_399375_+	J domain-containing protein	NA	NA	NA	NA
WP_027688380.1\|400106_403370_-	error-prone DNA polymerase	A0A1C9LWZ5	Streptomyces_phage	4.8e-86	26.5
WP_027688379.1\|403366_404878_-	DNA polymerase Y family protein	NA	NA	NA	NA
WP_027688378.1\|404798_405557_-	hypothetical protein	NA	NA	NA	NA
WP_027688377.1\|405731_405995_+	hypothetical protein	NA	NA	NA	NA
WP_027688376.1\|407323_407809_-	hypothetical protein	NA	NA	NA	NA
WP_027688375.1\|408059_408317_+	hypothetical protein	NA	NA	NA	NA
WP_027688374.1\|408714_409158_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_027688372.1\|409623_409824_+	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_027688371.1\|409820_410204_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_027688370.1\|410503_411394_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	2.3e-06	30.1
WP_085065853.1\|411491_411827_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_027688369.1\|412084_412651_-	hypothetical protein	NA	NA	NA	NA
WP_027688368.1\|412647_413877_-	ATP-binding protein	NA	NA	NA	NA
WP_156925142.1\|413949_414108_+	hypothetical protein	NA	NA	NA	NA
WP_130663815.1\|414104_414362_-	hypothetical protein	NA	NA	NA	NA
WP_027688367.1\|415024_415465_-	hypothetical protein	NA	NA	NA	NA
WP_027688366.1\|416660_417065_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_027688365.1\|417061_417295_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_027688364.1\|417918_418623_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_042940979.1\|419079_420774_-	asparagine synthase	NA	NA	NA	NA
WP_027688361.1\|420995_421634_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_027688360.1\|421815_422703_-	GHMP kinase	NA	NA	NA	NA
WP_027688359.1\|422713_423472_-	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_027688356.1\|425590_425854_+	hypothetical protein	NA	NA	NA	NA
WP_027688355.1\|425911_426544_+	hypothetical protein	NA	NA	NA	NA
WP_130683353.1\|426981_427497_+\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_130663926.1\|427378_427921_+\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_130689242.1\|428350_428983_-	NYN domain-containing protein	NA	NA	NA	NA
WP_027688354.1\|429794_429995_+	hypothetical protein	NA	NA	NA	NA
WP_130689793.1\|430128_430989_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	9.0e-32	33.5
WP_027689888.1\|433951_434665_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_156925176.1\|434846_435572_-	hypothetical protein	NA	NA	NA	NA
WP_130663929.1\|436770_437487_-\|transposase	IS6 family transposase	NA	NA	NA	NA
437236:437257	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP053205

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

895391 : 949784

Rhizobium_phage(18.18%)

protease,holin,transposase,capsid,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018068848.1\|895391_896366_+\|capsid	phage major capsid protein	Q94MS1	Myxococcus_phage	3.9e-84	51.7
WP_018068847.1\|896388_897174_+	hypothetical protein	NA	NA	NA	NA
WP_027689689.1\|897444_898017_+	hypothetical protein	NA	NA	NA	NA
WP_018068845.1\|898033_898741_+	hypothetical protein	NA	NA	NA	NA
WP_027689690.1\|898737_900561_+	hypothetical protein	A0A088F6U1	Sulfitobacter_phage	2.8e-43	28.6
WP_018068843.1\|900557_900974_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_027689691.1\|900939_901944_+\|tail	tail fiber domain-containing protein	A0A1L7QQ51	Brucella_phage	3.6e-56	41.0
WP_027689693.1\|905676_907032_+	hypothetical protein	L7TMF7	Rhizobium_phage	5.7e-73	55.9
WP_042941435.1\|907107_908070_-	acyltransferase	NA	NA	NA	NA
WP_027689695.1\|908362_908920_+	acyltransferase	M1HKK6	Paramecium_bursaria_Chlorella_virus	6.9e-09	51.8
WP_027689696.1\|909220_909475_+	hypothetical protein	NA	NA	NA	NA
WP_171481036.1\|909669_910353_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_018068827.1\|910480_911017_-	hypothetical protein	NA	NA	NA	NA
WP_024322739.1\|911264_911519_+	hypothetical protein	NA	NA	NA	NA
WP_027689698.1\|911493_911958_+	lysozyme	A0A0K1LL70	Rhodobacter_phage	4.0e-26	44.1
WP_027689699.1\|911957_912320_+	hypothetical protein	NA	NA	NA	NA
WP_026170649.1\|912339_912552_+	hypothetical protein	NA	NA	NA	NA
WP_027689700.1\|912548_914156_+	hypothetical protein	L7TKC4	Rhizobium_phage	1.8e-214	68.3
WP_027689701.1\|914172_914601_+	hypothetical protein	NA	NA	NA	NA
WP_018068820.1\|914850_915036_+	hypothetical protein	NA	NA	NA	NA
WP_018068819.1\|915718_915919_-	hypothetical protein	NA	NA	NA	NA
WP_018068818.1\|916239_916422_-	hypothetical protein	NA	NA	NA	NA
WP_018068817.1\|916550_916787_-	hypothetical protein	NA	NA	NA	NA
WP_024322733.1\|916994_917438_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_017959492.1\|917523_917670_-	hypothetical protein	NA	NA	NA	NA
WP_027689702.1\|917741_918104_-	hypothetical protein	NA	NA	NA	NA
WP_018068814.1\|918174_918438_-	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_011650973.1\|918578_918878_-	hypothetical protein	NA	NA	NA	NA
WP_027689703.1\|919069_919474_+	hypothetical protein	NA	NA	NA	NA
WP_027689704.1\|919546_919921_+	hypothetical protein	NA	NA	NA	NA
WP_027689705.1\|920063_921569_-\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	4.9e-25	29.1
WP_027689707.1\|922128_923166_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_018068808.1\|923219_924149_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_024322727.1\|924260_924860_+	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_018068806.1\|924956_925877_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_018068805.1\|925878_926832_-	NmrA/HSCARG family protein	NA	NA	NA	NA
WP_027689708.1\|927128_928103_-	quinone oxidoreductase	NA	NA	NA	NA
WP_018068802.1\|928148_929039_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_018068800.1\|930041_931538_-	sulfate adenylyltransferase subunit CysN	A0A1V0SGC3	Hokovirus	1.8e-27	28.1
WP_018068799.1\|931539_932493_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_018068798.1\|932638_933397_-	phosphoadenylyl-sulfate reductase	NA	NA	NA	NA
WP_003546399.1\|933817_934264_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_018068797.1\|934456_934867_+	GFA family protein	NA	NA	NA	NA
WP_018068796.1\|934928_936581_-\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	1.2e-64	32.1
WP_018068795.1\|936781_938245_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_024322718.1\|938241_938868_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_018068794.1\|939025_939574_+	HdeD family acid-resistance protein	NA	NA	NA	NA
WP_012756551.1\|939773_940013_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_018068793.1\|940125_941994_+	EAL domain-containing protein	NA	NA	NA	NA
WP_018068792.1\|942167_943166_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA
WP_018068791.1\|943259_944699_-	MFS transporter	A0A0M3UL24	Mycobacterium_phage	3.0e-16	27.8
WP_042941439.1\|944800_945424_+	transcriptional regulator	NA	NA	NA	NA
WP_018068789.1\|945449_946661_-	MFS transporter	NA	NA	NA	NA
WP_130815404.1\|947463_948435_+\|transposase	transposase	NA	NA	NA	NA
WP_027689711.1\|948671_949784_+\|transposase	IS4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1333837 : 1342891

Aeromonas_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018070506.1\|1333837_1335136_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	9.8e-99	51.5
WP_003547190.1\|1335145_1335622_+	transcriptional repressor NrdR	NA	NA	NA	NA
WP_018070505.1\|1335625_1336747_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	6.0e-36	33.4
WP_026170782.1\|1336746_1337358_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	3.4e-17	35.6
WP_026170781.1\|1337479_1338349_-	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	1.2e-95	59.2
WP_027689750.1\|1338359_1339247_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_027689751.1\|1339250_1340306_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.1e-95	51.2
WP_018070501.1\|1340312_1340891_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A218MN57	uncultured_virus	2.7e-32	45.6
WP_026170780.1\|1340914_1342891_-	hypothetical protein	A0A0G2Y9S0	Acanthamoeba_polyphaga_mimivirus	2.3e-06	26.7

DBSCAN-SWA_3

1409892 : 1419896

Bacillus_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018069457.1\|1409892_1411308_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.2e-12	33.0
WP_003547334.1\|1411582_1412212_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	9.4e-63	59.2
WP_003547337.1\|1412514_1413792_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	7.9e-133	58.6
WP_003547341.1\|1414194_1416612_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	2.5e-204	49.4
WP_003558438.1\|1416818_1417094_+	HU family DNA-binding protein	A0A172Q061	Acinetobacter_phage	7.1e-07	34.1
WP_018069458.1\|1417685_1419896_+	esterase-like activity of phytase family protein	E3SJA5	Synechococcus_phage	1.2e-80	40.7

DBSCAN-SWA_4

1713508 : 1726891

uncultured_Mediterranean_phage(90.91%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018073373.1\|1713508_1714522_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	7.3e-25	42.7
WP_024320655.1\|1714540_1715398_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	2.5e-34	38.5
WP_018073375.1\|1715394_1716111_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.0e-40	47.0
WP_018073376.1\|1716292_1716484_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	5.8e-08	69.8
WP_018073377.1\|1716535_1717147_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_003558883.1\|1717143_1717971_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	3.0e-53	46.5
WP_018073378.1\|1718072_1719356_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.2e-98	45.3
WP_018073379.1\|1719360_1720134_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.8e-23	30.2
WP_018073380.1\|1720130_1720784_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.6e-15	34.1
WP_026171001.1\|1721025_1722630_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV24	Clostridium_phage	5.1e-12	29.2
WP_018073382.1\|1722878_1723751_-	ATP-binding protein	NA	NA	NA	NA
WP_003558894.1\|1723957_1724305_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	2.4e-12	39.1
WP_018073383.1\|1724350_1726891_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	5.7e-58	48.6

DBSCAN-SWA_5

1788456 : 1826670

Sinorhizobium_phage(60.0%)

head,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_027689045.1\|1788456_1789836_+	DUF4942 domain-containing protein	A0A2I7RNS1	Vibrio_phage	8.5e-16	34.5
WP_027689046.1\|1789832_1791095_+	site-specific DNA-methyltransferase	A0A1B0VM49	Pseudomonas_phage	1.3e-71	40.6
WP_171481030.1\|1791091_1791250_+	hypothetical protein	NA	NA	NA	NA
WP_156925152.1\|1791246_1791501_+	hypothetical protein	NA	NA	NA	NA
WP_027689048.1\|1791497_1791818_+	VRR-NUC domain-containing protein	NA	NA	NA	NA
WP_051320234.1\|1791814_1792558_+	HNH endonuclease	A0A1C9LVX4	Vibrio_phage	3.6e-05	35.0
WP_027689049.1\|1792554_1793337_+	YdaU family protein	A0A0U2RT81	Escherichia_phage	8.2e-16	43.3
WP_027689050.1\|1793333_1793792_+	hypothetical protein	NA	NA	NA	NA
WP_027689051.1\|1793788_1794079_+	hypothetical protein	NA	NA	NA	NA
WP_027689052.1\|1794075_1794543_+	hypothetical protein	NA	NA	NA	NA
WP_051320235.1\|1794573_1795197_+	hypothetical protein	A0A076G6H3	Sinorhizobium_phage	2.4e-18	33.8
WP_027689053.1\|1795701_1795923_+	hypothetical protein	NA	NA	NA	NA
WP_156925173.1\|1796072_1796687_+	hypothetical protein	A9YWZ4	Burkholderia_phage	2.5e-52	53.6
WP_027689055.1\|1796708_1797167_+	DUF2280 domain-containing protein	A0A125RNL6	Pseudomonas_phage	4.8e-32	49.7
WP_027689056.1\|1797153_1798557_+\|terminase	phage terminase large subunit	A0A0S4KXH6	Pseudomonas_phage	4.8e-75	36.8
WP_027689057.1\|1798553_1799942_+	DUF1073 domain-containing protein	A0A076G6H8	Sinorhizobium_phage	1.9e-185	69.6
WP_027689058.1\|1799938_1800226_+	hypothetical protein	NA	NA	NA	NA
WP_027689059.1\|1800247_1801372_+	hypothetical protein	A0A076G8G2	Sinorhizobium_phage	2.6e-140	72.8
WP_027689060.1\|1801372_1801819_+	hypothetical protein	A0A076G7F5	Sinorhizobium_phage	3.8e-42	57.6
WP_027689061.1\|1801831_1802872_+	hypothetical protein	A0A076GD16	Sinorhizobium_phage	2.4e-127	64.5
WP_027689062.1\|1802927_1803263_+	hypothetical protein	A0A076G6Z4	Sinorhizobium_phage	8.6e-31	58.8
WP_027689063.1\|1803307_1805197_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_156925153.1\|1805212_1805515_-	hypothetical protein	NA	NA	NA	NA
WP_027689065.1\|1805715_1806225_+	hypothetical protein	A0A076G6I4	Sinorhizobium_phage	6.9e-56	69.1
WP_027689066.1\|1806217_1806586_+	hypothetical protein	A0A076G8G5	Sinorhizobium_phage	2.0e-28	50.9
WP_027689067.1\|1806582_1806777_+	hypothetical protein	NA	NA	NA	NA
WP_171481040.1\|1806789_1806960_+	hypothetical protein	NA	NA	NA	NA
WP_027689068.1\|1806956_1807286_+	twin-arginine translocation signal domain-containing protein	NA	NA	NA	NA
WP_027689069.1\|1807285_1808338_+\|head	head morphogenesis protein SPP1	A0A076G6I6	Sinorhizobium_phage	1.0e-114	64.2
WP_027689070.1\|1808337_1808805_+	hypothetical protein	A0A076G8G8	Sinorhizobium_phage	1.5e-44	60.6
WP_051320237.1\|1808878_1809787_+	HNH endonuclease	A0A218KCC2	Bacillus_phage	1.2e-18	32.5
WP_027689071.1\|1809958_1810390_+	hypothetical protein	A0A076G7G6	Sinorhizobium_phage	1.0e-60	77.6
WP_027689072.1\|1810450_1811191_+	hypothetical protein	A0A076GD25	Sinorhizobium_phage	3.2e-94	72.4
WP_027689073.1\|1811190_1811625_+	hypothetical protein	A0A076G701	Sinorhizobium_phage	3.1e-49	70.8
WP_085065891.1\|1811651_1811951_+	hypothetical protein	A0A076G6J1	Sinorhizobium_phage	3.7e-33	66.0
WP_027689074.1\|1811955_1814847_+	hypothetical protein	A0A076G7H2	Sinorhizobium_phage	1.7e-204	47.9
WP_027689075.1\|1814849_1815581_+	hypothetical protein	A0A076GD29	Sinorhizobium_phage	1.9e-78	57.2
WP_027689076.1\|1815580_1816195_+	hypothetical protein	A0A076G707	Sinorhizobium_phage	3.2e-76	66.2
WP_027689077.1\|1816205_1816622_+	hypothetical protein	A0A076G6J4	Sinorhizobium_phage	4.6e-34	52.2
WP_042941205.1\|1816618_1818820_+	hypothetical protein	A0A076G8H4	Sinorhizobium_phage	1.3e-260	64.4
WP_027689079.1\|1818834_1821306_+	hypothetical protein	A0A076G7H5	Sinorhizobium_phage	1.2e-49	54.1
WP_027689080.1\|1821302_1821569_-	hypothetical protein	A0A068CH68	Rhizobium_phage	1.2e-14	44.3
WP_051320238.1\|1822820_1823111_+	hypothetical protein	A0A076G8H8	Sinorhizobium_phage	7.0e-13	49.4
WP_051320239.1\|1823265_1823532_+	hypothetical protein	A0A068CDF0	Rhizobium_phage	6.4e-37	88.6
WP_027689083.1\|1823528_1823711_+	hypothetical protein	A0A068CCA1	Rhizobium_phage	9.7e-21	88.3
WP_051320240.1\|1823710_1824190_+	hypothetical protein	A0A068CH76	Rhizobium_phage	1.8e-74	92.4
WP_027689085.1\|1824400_1824640_-	hypothetical protein	NA	NA	NA	NA
WP_027689086.1\|1824792_1825836_+	ATP-dependent DNA ligase	A0A068CDF3	Rhizobium_phage	7.8e-155	79.8
WP_018073430.1\|1826337_1826670_-	nuclease	G8DH70	Emiliania_huxleyi_virus	1.8e-12	39.3

DBSCAN-SWA_6

3089757 : 3103286

Vibrio_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018074040.1\|3089757_3091815_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.7e-36	33.6
WP_018074038.1\|3092509_3093547_-	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	7.1e-15	68.6
WP_018074037.1\|3093657_3094845_-	glycine C-acetyltransferase	D2TEZ5	Emiliania_huxleyi_virus	1.5e-37	28.6
WP_018074036.1\|3095010_3095739_-	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	4.7e-50	42.4
WP_018074035.1\|3095909_3097778_-	DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	2.4e-77	35.7
WP_018074034.1\|3097777_3099787_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.6e-87	41.5
WP_018074032.1\|3100458_3101349_+	hypothetical protein	NA	NA	NA	NA
WP_018074031.1\|3101352_3101808_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	5.3e-15	38.7
WP_032996063.1\|3102080_3103286_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	1.5e-40	33.2

DBSCAN-SWA_7

4061175 : 4068302

Mycobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018068191.1\|4061175_4061886_+	7-cyano-7-deazaguanine synthase QueC	A0A2P1JXV3	Rhodococcus_phage	9.3e-51	49.6
WP_018068190.1\|4061885_4062242_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_026170605.1\|4062238_4062967_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	1.3e-39	37.6
WP_018068188.1\|4062971_4064195_-	adenylate/guanylate cyclase domain-containing protein	M1HLN3	Pelagibacter_phage	2.7e-13	28.8
WP_027689383.1\|4064298_4065273_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	2.3e-137	73.8
WP_018068187.1\|4065508_4067713_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	1.5e-211	52.1
WP_018243700.1\|4068080_4068302_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	7.9e-17	52.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP053207

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

336094 : 345191

Planktothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_027688800.1\|336094_337150_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.6e-27	35.0
WP_027688799.1\|337149_337929_+	glycerophosphodiester phosphodiesterase	A0A173GBD0	Staphylococcus_phage	3.7e-08	35.2
WP_027688798.1\|337912_338917_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	2.7e-19	28.0
WP_024320120.1\|338916_339726_+	inositol monophosphatase	NA	NA	NA	NA
WP_027688797.1\|339800_341456_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.9e-18	34.8
WP_027688796.1\|341584_342448_-	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA
WP_027688795.1\|342520_343615_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA
WP_027688794.1\|343626_344409_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.3e-18	32.4
WP_027688793.1\|344405_345191_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.1e-15	33.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP053209

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP053205

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP053207

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection