CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_021828	Listeria monocytogenes plasmid unnamed, complete sequence	0 crisprs	cas5,csa3	0	0	6	0
NC_021838	Listeria monocytogenes, complete sequence	4 crisprs	csa3,csn2,cas2,cas1,cas9,DinG,cas3,DEDDh,cas5,cas7,cas8b2,cas6,RT,casR,WYL	5	43	9	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 3664

Marinitoga_camini_virus(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012952173.1\|254_599_-	TnpV protein	NA	NA	NA	NA
WP_003728485.1\|1311_1710_-	hypothetical protein	NA	NA	NA	NA
WP_003728486.1\|1883_2219_+	helix-turn-helix transcriptional regulator	A0A139ZPK3	Marinitoga_camini_virus	2.8e-05	35.0
WP_003728487.1\|2255_2786_-	hypothetical protein	NA	NA	NA	NA
WP_003728488.1\|2899_3664_-	Fic family protein	A0A0G3Y4Q5	Ostreid_herpesvirus	2.6e-06	29.4

DBSCAN-SWA_2

8339 : 11011

Lactococcus_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728496.1\|8339_9566_+\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	4.7e-135	60.6
WP_013315180.1\|9576_10332_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.4e-81	63.2
WP_023553716.1\|10423_11011_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.5e-33	41.7

DBSCAN-SWA_3

14448 : 24054

Enterococcus_phage(16.67%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728501.1\|14448_15423_+	AAA family ATPase	F0PIG8	Enterococcus_phage	2.4e-33	35.0
WP_003728502.1\|15400_15697_+	hypothetical protein	NA	NA	NA	NA
WP_003728503.1\|15747_17028_-	Y-family DNA polymerase	O64031	Bacillus_phage	5.2e-92	44.9
WP_003728504.1\|17015_17360_-	hypothetical protein	NA	NA	NA	NA
WP_003728505.1\|17564_18299_-	AAA family ATPase	NA	NA	NA	NA
WP_013315188.1\|18473_19814_-\|transposase	IS3 family transposase	A0A0C5AC89	Paenibacillus_phage	1.1e-31	38.6
WP_003728507.1\|20089_22204_-\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	3.4e-117	39.1
WP_003728509.1\|22631_22868_-	helix-turn-helix transcriptional regulator	A0A097PBE6	Streptococcus_pyogenes_phage	6.7e-14	53.4
WP_003731679.1\|22830_23109_+	hypothetical protein	NA	NA	NA	NA
WP_003728510.1\|23228_23456_-	hypothetical protein	NA	NA	NA	NA
WP_003728511.1\|23445_24054_-	recombinase family protein	A0A1W5LU24	Ralstonia_phage	1.0e-21	42.9

DBSCAN-SWA_4

27383 : 44475

Lactobacillus_phage(27.27%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728514.1\|27383_27638_+\|transposase	transposase	Q6J1X3	Lactobacillus_phage	1.6e-13	46.4
WP_115914824.1\|27634_28522_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	7.3e-69	51.1
WP_003731678.1\|28611_29328_-	AP2 domain-containing protein	O03945	Lactobacillus_phage	3.8e-20	31.0
WP_003728517.1\|29343_30066_-	CRISPR-associated protein Cas5	NA	NA	NA	NA
WP_003728518.1\|30069_30495_-	hypothetical protein	NA	NA	NA	NA
WP_003728519.1\|30495_30744_-	hypothetical protein	NA	NA	NA	NA
WP_003728520.1\|30865_31354_-	hypothetical protein	NA	NA	NA	NA
WP_003769263.1\|31512_31890_-	DUF3850 domain-containing protein	C9E2N9	Enterococcus_phage	2.2e-14	55.1
WP_003731676.1\|31908_32571_-	DUF2786 domain-containing protein	NA	NA	NA	NA
WP_003728462.1\|32570_32897_-	hypothetical protein	A0A2K9V3N4	Faecalibacterium_phage	3.2e-06	40.8
WP_003728463.1\|33027_33279_+	hypothetical protein	NA	NA	NA	NA
WP_003728464.1\|33339_33582_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_003728465.1\|33575_33917_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_003728466.1\|34109_36245_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.6e-247	64.5
WP_003728467.1\|36244_36604_-	Cd(II)-sensing metalloregulatory transcriptional repressor CadC	E4ZFI8	Streptococcus_phage	3.1e-26	50.0
WP_003728468.1\|36883_37438_+	recombinase family protein	A0A0F7LA37	Escherichia_phage	7.0e-38	53.4
WP_003728469.1\|37441_40357_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.9e-174	36.7
WP_003728471.1\|41539_43636_-	copper-translocating P-type ATPase CopB	A0A218MNH6	uncultured_virus	1.1e-70	31.0
WP_003728472.1\|43911_44475_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	2.0e-40	51.1

DBSCAN-SWA_5

48267 : 50912

Streptococcus_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043993356.1\|48267_48909_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	3.0e-101	83.6
WP_003728476.1\|49028_50912_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	5.6e-87	35.3

DBSCAN-SWA_6

54124 : 56793

Erysipelothrix_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728481.1\|54124_55489_-	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.9e-07	23.5
WP_002389568.1\|56112_56793_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	2.6e-119	90.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_021838

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CRISPR-Cas detection and classification

Crispr_ID: NC_021838_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021838_1

335906-338583

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	PILER-CR
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	PILER-CR

40 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NC_021838_1

>merge|NC_021838|1|335906-338583|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAACAAACATAAGTTCAATCTCTTCCCCATCACTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGTAGGGGCGGGGCTTCTATATAAGTGCTAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGAATGGATTTATTACGGTCATTTTGCCCAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCGCTGCTCACTTACGAAAAAACAGACTATAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTACTGATCTACTCCACCGCTTAACATCGTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACACTCCCTGTTATCTACAAATATCGTTGCCCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCACATTAGCGTCGTCTAATTTTTCCGTCGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGGCTCCTTTATGATCTGATTTATTGCTTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAAGTCAAACACTTTAATCGCGGCACCAATAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAAGTCAAACACTTTAATCGCGGCACCAATAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAACTCGTAGTTTTTGTTTTCAGATTTAGGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTGTTACTGCTTCGCCGATGCTTGTTTTACCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCCAAAGGAGCTAATTTACTCCCTAAACCTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTGAGGCTAGCGGATATACTTTTGAATACGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTATACAAAAGTAATAGAGATAATAAATACTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTAGCAAGAGCGATATTATCAATATTATTTCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACACCGAAAGATTAAGCTTAGACATTGTATATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACATACACCCACGCTACAAATAGATAACACACGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCAGACTGGCCGGAAGAAAAAGCGACTCTGGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTAATGGACAAAGCTACCGAAGACACAAAAGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGGAGTACCTCTTCCGGAATATCGAAAAGAGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTATCCATGCCATCATAGCCCCAAGCATTGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTGAGGAGAGCCCGTCCAGCGTCGAAGTGGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGAGTCTTGCGTACTAAACCTTATCTGAGGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAATTGCGCTTGCCAACATTAAATGCCCCGTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGTATATTAGCCATACAATAAGCCCCCATATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGGGCATTGGCTGAATGACTACATTGCTCTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTACGAGATTATTCAGAACCAAATGCAAGAGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCTAAGAAGACCAATGCTGAAACTGAAGCGCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTAAACGGCGTATTCACAGGTGAAACTGAAGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCAAGTTGAAGATATTAACTACATTCAGACAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTGCTAATTCTTTAGCAGTATCTAAAGTTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTACGAGGAGAGACAGTACAAACGTGAAAAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTAATGATGAGTTACTTGGAATTTGTACAATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTAGTAGTATTCTTAGCAGACAATAAAAGTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCTTTTACAGTTACAGCATTGAATAATATTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACATATACGAGTAGAAAGGAAACATCTATATGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCGCCCCTGCATGTGTATACTATGGTACGAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCCATATTAGCACAGTTATTATACTACTATCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCGCACCTGTGACACCTAACTGGTCTATTGCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NC_021838|1|1|335906-338583|CRISPRCasFinder
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAAC	AAACATAAGTTCAATCTCTTCCCCATCACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTAGGGGCGGGGCTTCTATATAAGTGCTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAATGGATTTATTACGGTCATTTTGCCCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCGCTGCTCACTTACGAAAAAACAGACTATA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACTGATCTACTCCACCGCTTAACATCGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACTCCCTGTTATCTACAAATATCGTTGCCC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCACATTAGCGTCGTCTAATTTTTCCGTCG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGGCTCCTTTATGATCTGATTTATTGCTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAGTCAAACACTTTAATCGCGGCACCAATA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAGTCAAACACTTTAATCGCGGCACCAATA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACTCGTAGTTTTTGTTTTCAGATTTAGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGTTACTGCTTCGCCGATGCTTGTTTTACC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CCAAAGGAGCTAATTTACTCCCTAAACCTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGAGGCTAGCGGATATACTTTTGAATACG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TATACAAAAGTAATAGAGATAATAAATACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAGCAAGAGCGATATTATCAATATTATTTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACCGAAAGATTAAGCTTAGACATTGTATAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATACACCCACGCTACAAATAGATAACACAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAGACTGGCCGGAAGAAAAAGCGACTCTGG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAATGGACAAAGCTACCGAAGACACAAAAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGAGTACCTCTTCCGGAATATCGAAAAGAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTATCCATGCCATCATAGCCCCAAGCATTG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGAGGAGAGCCCGTCCAGCGTCGAAGTGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAGTCTTGCGTACTAAACCTTATCTGAGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATTGCGCTTGCCAACATTAAATGCCCCGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTATATTAGCCATACAATAAGCCCCCATAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGGGCATTGGCTGAATGACTACATTGCTCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACGAGATTATTCAGAACCAAATGCAAGAGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTAAGAAGACCAATGCTGAAACTGAAGCGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAAACGGCGTATTCACAGGTGAAACTGAAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGTTGAAGATATTAACTACATTCAGACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGCTAATTCTTTAGCAGTATCTAAAGTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACGAGGAGAGACAGTACAAACGTGAAAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAATGATGAGTTACTTGGAATTTGTACAAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAGTAGTATTCTTAGCAGACAATAAAAGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTTTTACAGTTACAGCATTGAATAATATTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATATACGAGTAGAAAGGAAACATCTATATG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CGCCCCTGCATGTGTATACTATGGTACGAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CCATATTAGCACAGTTATTATACTACTATC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CGCACCTGTGACACCTAACTGGTCTATTGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NC_021838|1|1|335906-338583|CRT
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAAC	AAACATAAGTTCAATCTCTTCCCCATCACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTAGGGGCGGGGCTTCTATATAAGTGCTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAATGGATTTATTACGGTCATTTTGCCCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCGCTGCTCACTTACGAAAAAACAGACTATA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACTGATCTACTCCACCGCTTAACATCGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACTCCCTGTTATCTACAAATATCGTTGCCC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCACATTAGCGTCGTCTAATTTTTCCGTCG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGGCTCCTTTATGATCTGATTTATTGCTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAGTCAAACACTTTAATCGCGGCACCAATA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAGTCAAACACTTTAATCGCGGCACCAATA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACTCGTAGTTTTTGTTTTCAGATTTAGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGTTACTGCTTCGCCGATGCTTGTTTTACC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CCAAAGGAGCTAATTTACTCCCTAAACCTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGAGGCTAGCGGATATACTTTTGAATACG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TATACAAAAGTAATAGAGATAATAAATACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAGCAAGAGCGATATTATCAATATTATTTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACCGAAAGATTAAGCTTAGACATTGTATAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATACACCCACGCTACAAATAGATAACACAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAGACTGGCCGGAAGAAAAAGCGACTCTGG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAATGGACAAAGCTACCGAAGACACAAAAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGAGTACCTCTTCCGGAATATCGAAAAGAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTATCCATGCCATCATAGCCCCAAGCATTG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGAGGAGAGCCCGTCCAGCGTCGAAGTGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAGTCTTGCGTACTAAACCTTATCTGAGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATTGCGCTTGCCAACATTAAATGCCCCGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTATATTAGCCATACAATAAGCCCCCATAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGGGCATTGGCTGAATGACTACATTGCTCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACGAGATTATTCAGAACCAAATGCAAGAGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTAAGAAGACCAATGCTGAAACTGAAGCGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAAACGGCGTATTCACAGGTGAAACTGAAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGTTGAAGATATTAACTACATTCAGACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGCTAATTCTTTAGCAGTATCTAAAGTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACGAGGAGAGACAGTACAAACGTGAAAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAATGATGAGTTACTTGGAATTTGTACAAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAGTAGTATTCTTAGCAGACAATAAAAGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTTTTACAGTTACAGCATTGAATAATATTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATATACGAGTAGAAAGGAAACATCTATATG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CGCCCCTGCATGTGTATACTATGGTACGAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CCATATTAGCACAGTTATTATACTACTATC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CGCACCTGTGACACCTAACTGGTCTATTGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NC_021838|1|1|335972-336404|PILER-CR
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTAGGGGCGGGGCTTCTATATAAGTGCTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAATGGATTTATTACGGTCATTTTGCCCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCGCTGCTCACTTACGAAAAAACAGACTATA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACTGATCTACTCCACCGCTTAACATCGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACTCCCTGTTATCTACAAATATCGTTGCCC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCACATTAGCGTCGTCTAATTTTTCCGTCG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGGCTCCTTTATGATCTGATTTATTGCTTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAAGTCAAACACTTTAATCGCGGCACCAATAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAAGTCAAACACTTTAATCGCGGCACCAATAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAACTCGTAGTTTTTGTTTTCAGATTTAGGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTGTTACTGCTTCGCCGATGCTTGTTTTACCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCCAAAGGAGCTAATTTACTCCCTAAACCTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTGAGGCTAGCGGATATACTTTTGAATACGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTATACAAAAGTAATAGAGATAATAAATACTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAGCAAGAGCGATATTATCAATATTATTTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACCGAAAGATTAAGCTTAGACATTGTATAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATACACCCACGCTACAAATAGATAACACAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAGACTGGCCGGAAGAAAAAGCGACTCTGG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAATGGACAAAGCTACCGAAGACACAAAAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGAGTACCTCTTCCGGAATATCGAAAAGAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTATCCATGCCATCATAGCCCCAAGCATTG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGAGGAGAGCCCGTCCAGCGTCGAAGTGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAGTCTTGCGTACTAAACCTTATCTGAGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATTGCGCTTGCCAACATTAAATGCCCCGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTATATTAGCCATACAATAAGCCCCCATAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGGGCATTGGCTGAATGACTACATTGCTCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACGAGATTATTCAGAACCAAATGCAAGAGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTAAGAAGACCAATGCTGAAACTGAAGCGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAAACGGCGTATTCACAGGTGAAACTGAAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGTTGAAGATATTAACTACATTCAGACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGCTAATTCTTTAGCAGTATCTAAAGTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACGAGGAGAGACAGTACAAACGTGAAAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAATGATGAGTTACTTGGAATTTGTACAAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAGTAGTATTCTTAGCAGACAATAAAAGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTTTTACAGTTACAGCATTGAATAATATTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATATACGAGTAGAAAGGAAACATCTATATG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CGCCCCTGCATGTGTATACTATGGTACGAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CCATATTAGCACAGTTATTATACTACTATC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CGCACCTGTGACACCTAACTGGTCTATTGC


>NC_021838|1|2|336897-338583|PILER-CR
	GTAGGGGCGGGGCTTCTATATAAGTGCTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAATGGATTTATTACGGTCATTTTGCCCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCGCTGCTCACTTACGAAAAAACAGACTATA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACTGATCTACTCCACCGCTTAACATCGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACTCCCTGTTATCTACAAATATCGTTGCCC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCACATTAGCGTCGTCTAATTTTTCCGTCG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGGCTCCTTTATGATCTGATTTATTGCTTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAAGTCAAACACTTTAATCGCGGCACCAATAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAAGTCAAACACTTTAATCGCGGCACCAATAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAACTCGTAGTTTTTGTTTTCAGATTTAGGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTGTTACTGCTTCGCCGATGCTTGTTTTACCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCCAAAGGAGCTAATTTACTCCCTAAACCTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTGAGGCTAGCGGATATACTTTTGAATACGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTATACAAAAGTAATAGAGATAATAAATACTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAGCAAGAGCGATATTATCAATATTATTTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACCGAAAGATTAAGCTTAGACATTGTATAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATACACCCACGCTACAAATAGATAACACAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAGACTGGCCGGAAGAAAAAGCGACTCTGG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAATGGACAAAGCTACCGAAGACACAAAAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGAGTACCTCTTCCGGAATATCGAAAAGAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTATCCATGCCATCATAGCCCCAAGCATTG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGAGGAGAGCCCGTCCAGCGTCGAAGTGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAGTCTTGCGTACTAAACCTTATCTGAGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATTGCGCTTGCCAACATTAAATGCCCCGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTATATTAGCCATACAATAAGCCCCCATAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGGGCATTGGCTGAATGACTACATTGCTCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACGAGATTATTCAGAACCAAATGCAAGAGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTAAGAAGACCAATGCTGAAACTGAAGCGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAAACGGCGTATTCACAGGTGAAACTGAAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGTTGAAGATATTAACTACATTCAGACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGCTAATTCTTTAGCAGTATCTAAAGTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACGAGGAGAGACAGTACAAACGTGAAAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAATGATGAGTTACTTGGAATTTGTACAAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TAGTAGTATTCTTAGCAGACAATAAAAGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTTTTACAGTTACAGCATTGAATAATATTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATATACGAGTAGAAAGGAAACATCTATATG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CGCCCCTGCATGTGTATACTATGGTACGAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CCATATTAGCACAGTTATTATACTACTATC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CGCACCTGTGACACCTAACTGGTCTATTGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_021838.1\|WP_003733614.1\|347583_348381_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NC_021838.1\|WP_003730791.1\|335017_335380_-\|hypothetical-protein	unknown	unknown	unknown
NC_021838.1\|WP_003730787.1\|338711_339374_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
NC_021838.1\|WP_003724015.1\|321973_322399_+\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl\|CDD\|225412
NC_021838.1\|WP_003724016.1\|322413_323121_+\|hypothetical-protein	unknown	unknown	unknown
NC_021838.1\|WP_003724014.1\|321535_321958_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_021838.1\|WP_003724017.1\|323179_323785_+\|hypothetical-protein	unknown	unknown	unknown
NC_021838.1\|WP_003724018.1\|323847_325011_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NC_021838.1\|WP_003723648.1\|339363_339705_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NC_021838.1\|WP_003730784.1\|345082_345562_-\|hypothetical-protein	unknown	unknown	unknown
NC_021838.1\|WP_003730792.1\|333600_334452_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381359
NC_021838.1\|WP_003726061.1\|334473_334896_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
NC_021838.1\|WP_003730793.1\|332036_333563_+\|GW-domain-containing-glycosaminoglycan-binding-protein	unknown	unknown	gnl\|CDD\|224619
NC_021838.1\|WP_003730794.1\|330739_331768_-\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NC_021838.1\|WP_003726075.1\|345785_346178_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NC_021838.1\|WP_003728531.1\|348383_349250_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|237454
NC_021838.1\|WP_003730786.1\|339701_340568_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NC_021838.1\|WP_003730783.1\|346831_347578_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NC_021838.1\|WP_003730785.1\|340568_344573_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NC_021838.1\|WP_003727703.1\|346199_346637_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703

Protein	Function_ID	Function_description	E-value
NC_021838.1\|WP_003733614.1\|347583_348381_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	4.31169e-53
NC_021838.1\|WP_003723648.1\|339363_339705_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.60762e-45
NC_021838.1\|WP_003724015.1\|321973_322399_+\|ImmA/IrrE-family-metallo-endopeptidase	gnl\|CDD\|225412	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism].	6.38766e-17
NC_021838.1\|WP_003724014.1\|321535_321958_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.10783e-14
NC_021838.1\|WP_003730783.1\|346831_347578_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	3.89524e-129
NC_021838.1\|WP_003724018.1\|323847_325011_+\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.83105e-40
NC_021838.1\|WP_003730786.1\|339701_340568_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	2.30636e-135
NC_021838.1\|WP_003726075.1\|345785_346178_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	3.78102e-86
NC_021838.1\|WP_003730792.1\|333600_334452_-\|aldo/keto-reductase	gnl\|CDD\|381359	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR). Klebsiella sp. 2,5-diketo-D-gluconic acid reductase (2,5-DKG reductase) is a founding member of aldo-keto reductase family 5 member F1 (AKR5F1). It catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG).	7.09169e-171
NC_021838.1\|WP_003726061.1\|334473_334896_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	4.55324e-42
NC_021838.1\|WP_003730793.1\|332036_333563_+\|GW-domain-containing-glycosaminoglycan-binding-protein	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	9.48061e-69
NC_021838.1\|WP_003730794.1\|330739_331768_-\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	2.79554e-114
NC_021838.1\|WP_003728531.1\|348383_349250_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|237454	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional.	0
NC_021838.1\|WP_003730787.1\|338711_339374_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	5.80993e-114
NC_021838.1\|WP_003730785.1\|340568_344573_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NC_021838.1\|WP_003727703.1\|346199_346637_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	2.08607e-102

>NC_021838.1|WP_003730791.1|335017_335380_-|hypothetical-protein
MKKTSIIFIFCALLLTACSTTTKEIPRQTTEATGTIEQVETESILIKNFKIKNDNNTPELSVRFHISEKYHDETGNKIKRTELNKNDNIKIILTKDFPIQETSPAQIDPKYIQKIILLNK
>NC_021838.1|WP_003726061.1|334473_334896_-|MerR-family-transcriptional-regulator
MNIKQAADMFGLTVDTLRYYERVGVIPPVHRNESGYRDYKTSDLNWVYLVKNLRNAGLSVESLIEFATLAQLRETQNVEAAQKQVLVDQLKELDEKLAEMKKVRELLVYKIDSYDSHIAQFKAGELNADNVEKLWKRDKF
>NC_021838.1|WP_003730792.1|333600_334452_-|aldo/keto-reductase
MKTVKLNNGVEVPILGFGTYQITDAAEAEQAVKDAIKTGYRHIDTAQSYMNEEAVGRGIVASGVDRKELFITTKIWVENVSYKGVMSSFDRSLKRLGLDYIDLLLIHQPFNDVYGAWIAMEELQASGKIRAIGVSNFSPDRVIDLAAFNEVTPQVNQIEVNPFQQQAANLAVLRKEGVAIEAWAPFAEGKNDIFNNPVLTKIGAKYGKSAAQVILRWLVEQDIIVLAKSVKPERMAQNLAIFDFELTEADKGEIASLDQGESQFFSHADPEMVKWMASRKLNV
>NC_021838.1|WP_003730793.1|332036_333563_+|GW-domain-containing-glycosaminoglycan-binding-protein
MDRKFIKPGIILLIVAFLVVSINVGAETGGSRTGQVNLTTSQQAFIDEILPAAQDGYRDGKLLTSVTLAQAILESNWGESGLSQNSNNLFGIKGTYKGESVSMGTMEASGSTTANFRVYPSWKESIEDHTALITENARYQDAVGETNYRKALQAIKDGGYATDPDYVSKLVAIIERYNLDKYDVIYDKIESNQSLAAIGTVAENKEQEVIWSAPYNTENANKIGTLENYLGRNLEISWEAKTEKGLWYFIRENNKDIGWINSNALKISYHQKEDENVHLTKYVDDLSAHVYRLPSPEKQFDNGTIAKYDRKALEVDKKITRGGYAWFRISEGEKVIGWVRADKLNDRLYDRITEQTSYDGYALVSKSATDNVWTAPFNTKNAEKLAPLADYDNEKLELVTRAKAGNTLWYQFKVDGKLVGWASEKDLNVFYTPAKEEPVKQVAYVKDPTAKLYNKPVESTSTNPKAVGFYYGKLLAVDKTATILGEDWLHLKDRQNSLGWIKAIDINS
>NC_021838.1|WP_003730794.1|330739_331768_-|Mrp/NBP35-family-ATP-binding-protein
MLNEQQITRLLYRLQDPVLEASLEETEGVLEVQVLEETANIKIALADPAVETDHFVHNIEELLTQFGVNEINIELEYLPAAVIDRIFQARDNILSEASETKFLAIASGKGGVGKSTVSANLAIALAQQGKKVGLLDADIYGFSIPVLLGTTESPRKENGQIIPVETHGIQMISMDFFVEQGEPVIWRGPMLGKMIKMFLEEVRWGKLDYLLIDLPPGTGDVALDIHTLIPKCNELIVTTPHYAAASVASRAGYMAAKNNHKIIGVIENMSYLTLADGQVLKVFGQGGGEKVAADLETQLLIQLPIEQPEPNGNGYVSAIFNSSSTSGKAYKTLAEKIIPYLS
>NC_021838.1|WP_003724018.1|323847_325011_+|site-specific-integrase
MASYVNLGNNKYELRVSKGYDARGKQIRKTKNVTVKTVKALKLELSNFEAYVYSSDYTEIKDMRFIDFVEKWRLNYAKRELKGNTIDKYNLFLENWIIPYFERKKISKITTMQLLDYFHEVQKKGVGPSALEGHHRVIRSLFKYATLWGITETDVSLSVKKPTYKVPEKNIYNRREIEVLIDRIKILQKYQQVMIKLALYCGLRRGEVIGLTTKDMNYNKNTINVYRAVIKSASEGIKLDETKNKRKRIVPAPAGLMQEIKELAKEKQKNKDKLGLLWKGTKDLDGKTVVLIFSHDDGTPFTPASVTRMFNRFLEKEENNDLTKISFHDLRHSAASFLLEQGINVKVIQNILGHSDIKVTLNTYAHITEDGYSEAAKTFDNFYKSSK
>NC_021838.1|WP_003724017.1|323179_323785_+|hypothetical-protein
MSKYRHLLKKWWLWVIFLLVIIGIVSLFWYTQVYSSEWGKGLSKEDKEVLEKANKSTNEFNKFAKEANSGIKSFNNDATINPQIVINPFTKMGDNITERSDEFIKDYDEYSISIQNILKDDYNNIKKLRDDVVAQQEEIKSIYSNAHNYNRELSTVESRIVENIYQEMHKEQKESLGLKNHEFKKNAEFSDKAIKLMPGVD
>NC_021838.1|WP_003724016.1|322413_323121_+|hypothetical-protein
MKKWIVLCFILLLSLVLYACGEPELDISDSTGKGYYLNQTGKTSDNAKITLKDENGDSKKIETDNNSFTMLFPRLNSKATYTVLAEKDEKTSETEIVVPKQKKLVSYEDLQGQFNYIFETEDDLSISLPESVTSDAEVTNGFKIMSDGNNVMSLLLTYSSNDKIGITDYNDFTYSIAAIMMSLDSENGLDKVLNALNNSMDDQKDTKVSVNEITYQFSTINTSSTNLTTLEIYPS
>NC_021838.1|WP_003724015.1|321973_322399_+|ImmA/IrrE-family-metallo-endopeptidase
MEMSEFIQQQIQKLVNIHETRNPFLIAKEKDILILKEDLGEVYGYYNKINRIKMIHLNNLFSDERQLFTCAHELCHALIHQDENTPQLSKQTIVSEWKVEKEANYFATQLLIDGSHLEHYIDTTDKIINFYGLPEEMKKYI
>NC_021838.1|WP_003724014.1|321535_321958_+|helix-turn-helix-transcriptional-regulator
MFGDRLRSLRENKNLTQQKVADDLNIKRENLSNYERNKREPDYEMLKKLAEYYGVSRSYILGETDKKQYWELDDKDERSIQKDLQKMIDDLSNSDAFAYSKEDGEMDENTKKLLIMSLENSLRIAKEESKKRFTPKKYRK
>NC_021838.1|WP_003730787.1|338711_339374_-|type-II-A-CRISPR-associated-protein-Csn2
MNFNFKLLDDPIQIEDSTIFVIEDVRVFANVTKFFYQYEETEELTIFDAKHQPLKSSELMLITDVLGHDINSAATLKLIYADLEQQLNEKPEVKSMIDKLTATISELIGYELLEHELDLEEDEITVIELFKALGIKIETKSDTVFEKLIEIVQVYKYLSKKKLLVLINVCSYLTEEELLELRQYISLYQVKVLFIEPRKIKGSPQVTLDSDYFLHVENSV
>NC_021838.1|WP_003723648.1|339363_339705_-|CRISPR-associated-endonuclease-Cas2
MSYRYMRMLLMFDMPTDTAKERKAYRQFRRFILSEGFIMHQYSVYSKILLNGTASKAMLARLKQQNPKKGLITLLTVTEKQFARMVYLSGEQNKSIGNSDARLVFLGDDADEF
>NC_021838.1|WP_003730786.1|339701_340568_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRTVVVNSHSKLSYKNQHLVFKSTYQQEMIHLSEIDVLILETTDITLTTMLINCLVAENILILFCDDKRLPIGKVLPFYGRHDSSLQLTKQLEWDAELKAAVWTEIISQKILNQSTYLSMLNYDEKASSLINLHEALAVFDPTNREGHAARIYFNQLFGNDFTREQENDINSGLNYGYTLLLSIFARELVKSGCMTQFGLKHANQFNDFNLASDLMEPFRPLVDQIVYEKRNEDFQVIKRSLFELFTKQFDYNDQHMFLTNIASDYTKKIVKVLNEEREGVPEFRI
>NC_021838.1|WP_003730785.1|340568_344573_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKNPYTIGLDIGTNSVGWAVLTDQYDLVKRKMKVAGNSDKKQIKKNFWGVRLFDDGQTAVDRRMNRTARRRIERRRNRISYLQEIFAVEMANIDANFFCRLNDSFYVDSEKRNSRHPFFATIEEEVAYHKNYRTIYHLREELVNSSEKADLRLVYLALAHIIKYRGNFLIEGALDTKNTSVDEVYKQFIQTYNQVFMSNIEEGALAKVEENTEVASILAGKFTRREKFERILRLYPGEKSTGMFAQFISLIVGNKGNFQKVFNLVEKTDIECAKDSYEEDLEALLAIIGDEYAELFVAAKNTYNAVVLSSIITVTATETNAKLSASMIERFDAHEKELGELKAFIKLHLPKQYQEIFNNAEIDGYAGYIDGKTKQVDFYKYLKTTLENVEGADYFITKIEEENFLRKQRTFDNGVIPHQLHLEELEAILHQQAKYYPFLREGYDKIKSLVTFRIPYFVGPLANGQSEFAWLTRKDDGEIRPWNIEEKVDFGKSAVDFIEKMTNKDTYLPKENVLPKHSLCYQKYMVYNELTKIRYIDDQGKTNYFSGREKQQIFNDLFKQKRKVKKKDLELFLRNINHIESPTIEGLEDSFNASYATYHDLLKVGLKQEILDNPLNTEILEDIVKILTVFEDKRMIKEQLEQFSDVLDGVVLKKLERRHYTGWGRLSAKLLVGIRDKQSHLTILDYLMNDDGLNRNLMQLINDSNLSFKSIIEKEQVSTTDKDLQSIVADLAGSPAIKKGILQSLKIVDELVSIMGYPPQTIVVEMARENQTTGKGKNNSKPRYKSLEKAIKDFGSQILKEHPTDNQELKNNRLYLYYLQNGKDIYTGQELDIHNLSNYDIDHIVPQSFITDNSIDNLVLTSSAGNREKGGDVPPLEIVRKRKVFWEKLYQGNLMSKRKFDYLTKAERGGLTEADKARFIHRQLVETRQITKNVANILHQRFNKETDNHGNTMEQVRIVTLKSALVSQFRKQFQLYKVREVNDYHHAHDAYLNGVVANTLLKVYPQLEPEFVYGEYHQFDWFKANKATAKKQFYTNIMLFFAQKERIIDENGEILWDKKYLETIKKVLDYRQINIVKKTEIQKGEFSKATIKPKGNSSKLIPRKENWDPVKYGGLDSPNMAYAVIIEHAKGKKKIVIEKKLIQINIMERKMFEKDEEAFLEEKGYHQPKVLTKLPKYTLYECEKGRRRMLSSANEAQKGNQLVLSNHLVSLLYHAKNCEASDGKSLKYIEAHRETFSELLAQVSEFATKYTLADANLSKINNLFEQNKEGDIKAIAQSFVDLMAFNAMGAPASFKFFEATIDRKRYTNLKELLSSTIIYQSITGLYESRKRLDD
>NC_021838.1|WP_003730784.1|345082_345562_-|hypothetical-protein
MKGLIINKMHSGYFTNMSEVFNLLPEEELNCMWLVSSYECNIYPFEQIPFEKEYVWMKGTELKEILNQEEVMFIWGNFTSYPSNTKLKDILKYPIPFADGNSDLWKKDVHLSNPLSNTELISWDGSIFLTLSKNTTLIEGLKDDYPDSEDLSTYNSDID
>NC_021838.1|WP_003726075.1|345785_346178_-|30S-ribosomal-protein-S9
MAQVQYYGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAALREVIKQPLVATETLGNYDVLVNVHGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDPRMKERKKYGLKGARRAPQFSKR
>NC_021838.1|WP_003727703.1|346199_346637_-|50S-ribosomal-protein-L13
MRTTYMAKPGEVERKWYVIDATGVSLGRLSSEVASILRGKNKPQFTPHIDTGDFVIIINAGKIGLTGKKATDKIYYRHSQYPGGLKSRTAGEMRTNNPEKLLELSIKGMLPKNSLGRQLFKKLHVYGGSEHEHAAQQPEVYELRG
>NC_021838.1|WP_003730783.1|346831_347578_-|tRNA-pseudouridine(38-40)-synthase-TruA
MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRITASGRTDTGVHAKGQVIHFDSELDITAEKFQKALQAMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLISKTAPPQGLYLWRVDYE
>NC_021838.1|WP_003733614.1|347583_348381_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MMDKMILGRYIPGNSWLHRIDPRAKITAVMAFIAIVFLANNWLTYALMFAYVLYLVLTSKVPFLFFIKGLQPIFWLILITLLLQVFFTKGGTVLVDLGLLQITTLGLTNGAMMFCRFVLIIFMTTLLTLTTSPIELTDGLEKILAPFRLVHLPVHELALMLSISLRFIPTLMDETEKILKAQKARGVEFTSGKWSDRIKAIIPLLVPLFISAFKRAEDLAIAMEARGYRGGKGRTRFRLLRWRFADTLLLISLVVLSGLLFWLRS
>NC_021838.1|WP_003728531.1|348383_349250_-|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MEIKLEQLGYCYQKNSPFEKRALLDVNVSFDSGSYSAIIGHTGSGKSTLLQHLNALLMPTEGKITVGDREIVAGVKQKKLRDLRKKVGIVFQFPEAQLFEETVEKDICFGPMNFGVSEEDAKLRAKKVIYEVGLTEEILSRSPFELSGGQMRRVAIAGVLAMDPEVLVLDEPTAGLDPHGREEIMEMFYNLHKEKGLTTVLVTHSMEDAARYAEKIVLMKAGTVLQIGTPREIFAKPDELVDLGLSVPDVVRFQGLFERKFDVKLTKTCLTIDELTTEMAPYLAKGGA

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Crispr_ID: NC_021838_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021838_2

821705-821859

Unclear

Consensus_repeat	Method
TTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NC_021838_2

>merge|NC_021838|2|821705-821859|CRISPRCasFinder
TTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGACACCGATGCTTCTTGGTTTTAATGCTCCTGCTACATCGGAACCGAGCTCATTCGAATTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC

>NC_021838|2|2|821705-821859|CRISPRCasFinder
TTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC	ACCGATGCTTCTTGGTTTTAATGCTCCTGCTACATCGGAACCGAGCTCATTCGAA
TTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_021838.1\|WP_003722726.1\|811955_812264_+\|septation-regulator-SpoVG	unknown	unknown	gnl\|CDD\|237321
NC_021838.1\|WP_003728175.1\|812650_814024_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|184643
NC_021838.1\|WP_003731749.1\|823808_824132_+\|DUF5502-family-protein	unknown	unknown	gnl\|CDD\|340321
NC_021838.1\|WP_003722725.1\|811528_811837_+\|septation-regulator-SpoVG	unknown	unknown	gnl\|CDD\|237321
NC_021838.1\|WP_003728174.1\|817256_818846_+\|cholesterol-dependent-cytolysin-listeriolysin-O	unknown	unknown	gnl\|CDD\|366559
NC_021838.1\|WP_003722739.1\|825929_826871_-\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|178836
NC_021838.1\|WP_003722728.1\|814074_815031_+\|ribose-phosphate-diphosphokinase	unknown	unknown	gnl\|CDD\|234929
NC_021838.1\|WP_172381192.1\|825177_825897_-\|DNA-alkylation-repair-protein	unknown	unknown	gnl\|CDD\|378033
NC_021838.1\|WP_003722729.1\|815074_815788_-\|listeriolysin-O-transcriptional-regulator-PrfA	unknown	unknown	gnl\|CDD\|223736
NC_021838.1\|WP_003722723.1\|808947_809640_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NC_021838.1\|WP_003731748.1\|822867_823737_+\|phosphatidylcholine-phospholipase-C	unknown	unknown	gnl\|CDD\|214813
NC_021838.1\|WP_003725734.1\|824264_824726_+\|YehR-family-lipoprotein	unknown	unknown	gnl\|CDD\|227145
NC_021838.1\|WP_003725735.1\|824778_825111_-\|putative-heavy-metal-binding-protein	unknown	unknown	gnl\|CDD\|179228
NC_021838.1\|WP_003728173.1\|819180_820713_+\|zinc-metalloproteinase-Mpl	unknown	unknown	gnl\|CDD\|225768
NC_021838.1\|WP_003722740.1\|827164_827788_+\|50S-ribosomal-protein-L25/general-stress-protein-Ctc	unknown	unknown	gnl\|CDD\|235534
NC_021838.1\|WP_003725507.1\|809636_810845_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182528
NC_021838.1\|WP_003725738.1\|828568_829129_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NC_021838.1\|WP_003725737.1\|827877_828462_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NC_021838.1\|WP_003728167.1\|829242_832782_+\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
NC_021838.1\|WP_003726703.1\|816060_817014_-\|phosphatidylinositol-specific-phospholipase-C	unknown	unknown	gnl\|CDD\|176497

Protein	Function_ID	Function_description	E-value
NC_021838.1\|WP_003722726.1\|811955_812264_+\|septation-regulator-SpoVG	gnl\|CDD\|237321	PRK13259, PRK13259, septation regulator SpoVG.	5.03804e-54
NC_021838.1\|WP_003728175.1\|812650_814024_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|184643	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	0
NC_021838.1\|WP_003731749.1\|823808_824132_+\|DUF5502-family-protein	gnl\|CDD\|340321	pfam17606, DUF5502, Family of unknown function (DUF5502). This is a family of unknown function found in Listeria.	1.35733e-43
NC_021838.1\|WP_003722725.1\|811528_811837_+\|septation-regulator-SpoVG	gnl\|CDD\|237321	PRK13259, PRK13259, septation regulator SpoVG.	2.92652e-53
NC_021838.1\|WP_003728174.1\|817256_818846_+\|cholesterol-dependent-cytolysin-listeriolysin-O	gnl\|CDD\|366559	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin.	7.22171e-179
NC_021838.1\|WP_003722739.1\|825929_826871_-\|L-lactate-dehydrogenase	gnl\|CDD\|178836	PRK00066, ldh, L-lactate dehydrogenase; Reviewed.	0
NC_021838.1\|WP_003722728.1\|814074_815031_+\|ribose-phosphate-diphosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NC_021838.1\|WP_172381192.1\|825177_825897_-\|DNA-alkylation-repair-protein	gnl\|CDD\|378033	pfam08713, DNA_alkylation, DNA alkylation repair enzyme. Proteins in this family are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein in this family shows it to adopt a supercoiled alpha helical structure.	3.05419e-22
NC_021838.1\|WP_003722729.1\|815074_815788_-\|listeriolysin-O-transcriptional-regulator-PrfA	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	9.59942e-12
NC_021838.1\|WP_003722723.1\|808947_809640_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	7.27113e-121
NC_021838.1\|WP_003731748.1\|822867_823737_+\|phosphatidylcholine-phospholipase-C	gnl\|CDD\|214813	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.	4.429e-86
NC_021838.1\|WP_003725734.1\|824264_824726_+\|YehR-family-lipoprotein	gnl\|CDD\|227145	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown].	1.52192e-59
NC_021838.1\|WP_003725735.1\|824778_825111_-\|putative-heavy-metal-binding-protein	gnl\|CDD\|179228	PRK01119, PRK01119, putative heavy metal-binding protein.	8.98192e-61
NC_021838.1\|WP_003728173.1\|819180_820713_+\|zinc-metalloproteinase-Mpl	gnl\|CDD\|225768	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism].	8.72102e-140
NC_021838.1\|WP_003722740.1\|827164_827788_+\|50S-ribosomal-protein-L25/general-stress-protein-Ctc	gnl\|CDD\|235534	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed.	2.38585e-63
NC_021838.1\|WP_003725507.1\|809636_810845_+\|ABC-transporter-permease	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	5.06393e-62
NC_021838.1\|WP_003725738.1\|828568_829129_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	1.72721e-108
NC_021838.1\|WP_003725737.1\|827877_828462_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.9401e-09
NC_021838.1\|WP_003728167.1\|829242_832782_+\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NC_021838.1\|WP_003726703.1\|816060_817014_-\|phosphatidylinositol-specific-phospholipase-C	gnl\|CDD\|176497	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated PI-analogues, PIP2 and PIP, to generate two important second messengers, InsP3 and DAG. InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. In contrast, bacterial PI-PLCs contain a single catalytic domain. Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. They participate in Ca2+-independent PI metabolism. They are characterized as phosphatidylinositol-specific phospholipase C (EC 4.6.1.13) that selectively hydrolyze PI, not PIP or PIP2. The TIM-barrel type catalytic domain in bacterial PI-PLCs is very similar to the one in eukaryotic PI-PLCs, in which the catalytic domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. The catalytic mechanism of both prokaryotic and eukaryotic PI-PLCs is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This superfamily also includes a distinctly different type of eukaryotic PLC, glycosylphosphatidylinositol-specific phospholipase C (GPI-PLC), an integral membrane protein characterized in the protozoan parasite Trypanosoma brucei. T. brucei GPI-PLC hydrolyzes the GPI-anchor on the variant specific glycoprotein (VSG), releasing dimyristyl glycerol (DMG), which may facilitate the evasion of the protozoan to the host#s immune system. It does not require Ca2+ for its activity and is more closely related to bacterial PI-PLCs, but not mammalian PI-PLCs.	1.53279e-112

>NC_021838.1|WP_003728173.1|819180_820713_+|zinc-metalloproteinase-Mpl
MKSKLICIIMVIAFQAHFNMAVKADSVGEERLRNNIQAKRNPADLKALPDSCEAKDFYKNFKILDMTKDKLGVTHYTLALSSDGYLTDNDEIKVHVTPDNKITFINGDLQQGQLRITNQIKITEKNAIEKAFEAIGQSEAHVKSYIGNPVKEKEIIINSRTKRLVYNIKLIFAEPEVASWIIQVDAETGAILKKQNMLSEVERADTHKDFQALGKGANRLLQRPLHVMKINDLFYLVDRTHKGLIRTFDLNHKTDASFGKVVSNKTNMFTDPEFSSAVDAHFYASEVYDYYKNVHQLESLDGKGGEIDSFVHYGLNCNNAFWDGREILYGDGDKKNFKPFSCAKTIVGHELTHAVIQYSAGLEYEGQSGALNESFADVFGYFIAPNHWLIGEDVCVRGLRDGRIRSIKDPDKYNQAAHMKDYESLPITEEGDWGGVHFNSGIPNKAAYNTITKLGKEKTEQLYFRALKYYLTKKAQFTDAKKALQQAAKDLYGEDASKKVAEAWEAVGVN
>NC_021838.1|WP_003728174.1|817256_818846_+|cholesterol-dependent-cytolysin-listeriolysin-O
MKKIMLVFITLILVSLPIAQQTEAKDASAFNKENLISSMAPPASPPASPKTPIEKKHADEIDKYIQGLDYNKNNVLVYHGDAVTNVPPRKGYKDGNEYIVVEKKKKSINQNNADIQVVNAISSLTYPGALVKANSELVENQPDVLPVKRDSLTLSIDLPGMTNQDNKIVVKNATKSNVNNAVNTLVERWNEKYAQAYPNVSAKIDYDDEMAYSESQLIAKFGTAFKAVNNSLNVNFGAISEGKMQEEVISFKQIYYNVNVNEPTRPSRFFGKAVTKEQLQALGVNAENPPAYISSVAYGRQVYLKLSTNSHSTKVKAAFDAAVSGKSVSGDVELTNIIKNSSFKAVIYGGSAKDEVQIIDGNLGDLRDILKKGATFNRETPGVPIAYTTNFLKDNELAVIKNNSEYIETTSKAYTDGKINIDHSGGYVAQFNISWDEINYDPEGNEIVQHKNWSENNKSKLAHFTSSIYLPGNARNINVYAKECTGLAWEWWRTVIDDRNLPLVKNRNISIWGTTLYPKYSNSVDNPIE
>NC_021838.1|WP_003726703.1|816060_817014_-|phosphatidylinositol-specific-phospholipase-C
MYKNYLQRTLVLVLCFILCFFTFPLGGKAYSLNNWNKPIKNSVTTKQWMSALPDTTSLAALSIPGTHDTMSYNGDMTWTLTKPLAQTQTMSLYQQLEAGIRYIDIRAKDNLKIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSENHTKKPLVINSHKFGMQFGASNQVIQDDYNGPSVKTKFKEIVQTAYQASKADNKLFLNHISATSLTFTPRQYAAALNNKVEQFVLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKFN
>NC_021838.1|WP_003722729.1|815074_815788_-|listeriolysin-O-transcriptional-regulator-PrfA
MNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN
>NC_021838.1|WP_003722728.1|814074_815031_+|ribose-phosphate-diphosphokinase
MSNEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDGEIQINIEESIRGCHVYVIQSTSNPVNQNLMELLIMIDALKRASAATINIVMPYYGYARQDRKARSREPITAKLVANLIETAGATRMITLDMHAPQIQGFFDIPIDHLNAVRLLSDYFSERHLGDDLVVVSPDHGGVTRARKMADRLKAPIAIIDKRRPRPNVAEVMNIVGNVEGKVCIIIDDIIDTAGTITLAAKALREAGATKVYACCSHPVLSGPAMKRIEESPIEKLVVTNSIALPEEKWIDKMEQLSVAALLGEAIVRVHENASVSSLFE
>NC_021838.1|WP_003728175.1|812650_814024_+|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MSKRYAVVLAAGQGTRMKSKLYKVLHPVCGKPMVEHVVDQISTLNVDKVVTIVGHGAEKVQEHLAGKSEFVKQEEQLGTAHAVLQAKAELAGKDGVTLVVCGDTPLIEASTMEALLKYHHEKRAKATILTTVIEDPTGYGRIIRDDLGIVEKIVEHKDATEKEQRISEINTGTYCFDNKALFEALENVSNDNVQGEYYLPDVIKILKDSDEVVAAYRMESFEESLGVNDRIALAEASRLMQRRINENHMRNGVTLVNPENTYIDIDVKIGQDTVIEPGVMLRGETVIGDDCVVTSGSEIVNSVIGERVHVRTSSIFESKVGDDVQIGPYAHLRPESDIHDHVKIGNYVETKKAVVGEGTKLPHFIYMGDAEIGKNVNVGCGSIAVNYDGKNKAKTIIGDNVFVGCNSNLIAPVKVGDRAFIAAGSTITKDVPDDALGIARAKQDNKLGYAKHLNHGK
>NC_021838.1|WP_003722726.1|811955_812264_+|septation-regulator-SpoVG
MQVTDVRLRRVETDGRMRAIASITLDEEFVVHDIRVIDGNNGLFVAMPSKRGVDGEFRDIAHPINSDTRAKIQEVVLAEYERVGEEEATAVTEEESESVSAE
>NC_021838.1|WP_003722725.1|811528_811837_+|septation-regulator-SpoVG
MEITDVRLRRVETDGRMKAISSITIDGEFVIHDIRVIDGNEGLFVAMPSKRTPDGEFRDIAHPINSGTRAKIQEAVLAAYEVADEPAVNEESSADESIVEEN
>NC_021838.1|WP_003725507.1|809636_810845_+|ABC-transporter-permease
MNVLQSMKMAWKQLKASKLRSFLTMLGIIIGVASVILLVSLGNGVTQEVDDQMGDLGSNLITVVNSSVNPNDKYTYDEVMKYQNIDGVKSVSPELSGQVNATFDYKNSSNKVIGTNDQYKAARSLEMKEGRFLLPIDTEYGQKVAVIGSTVASDLFGFGDPIGETIRLNGMPYKVVGVLKEKGASMMGSSDDQIFIPISSAQRLLKDTNVRTIYVETKSAEDVDFVVNTLESRLAIKFGDEKEQEKNASSAQMGPSYQVINQQEILNAFNTISTTLTTALGAIAAISLVVGGIGIMNIMLVSVSERTREIGIRKALGAKKRAILLQFLIESIVISVCGGIIGIIIGVSGALIFGSVAGISSGITAGTIIFSFVFSLCIGVIFGIAPANKASKLRPIDALRSE
>NC_021838.1|WP_003722723.1|808947_809640_+|ABC-transporter-ATP-binding-protein
MPKPLIDMKNLTKTYTLGGETFKALDDVTFTVEQGEFLSIVGPSGSGKSTLMNMIGCLDVPDEGSYHLDDVDVFKLSDNKLSEIRNKKIGFIFQQFNLLPKLSAFENVELPLIYAGLSVSAREKAAIECLEKVGLLEKRRNLPTQLSGGQQQRVAIARALAGKPQILLADEPTGALDSKTGKEVMGILQELNRAGNTIVMITHDPTIASYGTRSIRIQDGKLFHEEATQA
>NC_021838.1|WP_003731748.1|822867_823737_+|phosphatidylcholine-phospholipase-C
MKFKKVVLGMCLTASVLVFPVTIKASACCDEYLKPPAAPHDIDSKLPHKLSWSADNPTNTDVNTHYWLFKQAEKILAKDVDHMRANLMNELKNFDKQIAQGIYDADHKNPYYDTSTFLSHFYNPDKDNTYLPGFANAKITGAKYFNQSVADYREGKFDTAFYKLGLAIHYYTDISQPMHANNFTAISYPPGYHCAYENYVDTIKHNYQATEDMVVKRFCSDDVKEWLYENAKRAKADYPKIVNAKTKKSYLVGNSEWKKDTVEPTGARLRDSQQTLAGFLEFWSKKTNE
>NC_021838.1|WP_003731749.1|823808_824132_+|DUF5502-family-protein
MYIKGRLIFFFVMFVIALCSVLILLIIKMSVWKEEPFNLSDAKEIECLGSCKIKNTNQKIHFFSIKKNLFEEEGNMAGILNEHERKGADKSIFIVILDDEKGIANEE
>NC_021838.1|WP_003725734.1|824264_824726_+|YehR-family-lipoprotein
MKMLKKGTTVLFVMIMAVMLVACGDKEETKTYSLSQNGVDSKLTYTYKGDKVTKQTAENTMSYASLGVASKEDAEKMLKATSDKFQGIDGLKEKIEYKDDKAIETLEVDYTKISSEDMNKIPGMSSNGDTSKGISMEESAKMLESQGYKEVSK
>NC_021838.1|WP_003725735.1|824778_825111_-|putative-heavy-metal-binding-protein
MIVTTSPNIEGKQIIEYKKIVFGEVITGVNFMKDIGAGLRNFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDYEVLGADNGMLMVTASGTAVVIEAQDY
>NC_021838.1|WP_172381192.1|825177_825897_-|DNA-alkylation-repair-protein
MLFLLYLIYSRGVTRTITFDQLNTELQALENPNTIKIFRNHGCPDSLDLYGLKIGDLKKIIRREKLTKNHELAVELIESNNSDLIYLGLLAINPDKITTEQIEKWNIIFHETWSQLTFGLASIVSKRDDALLFAKTWIESDYDLTKSMGWQIYSEHINNLPEAEALLQRAKETLQTETNRTRYSMNGFIITCGIYKDDLHEKAMEAAKSVGKVHVNLGNTACKVPDAISYIEKARNRTK
>NC_021838.1|WP_003722739.1|825929_826871_-|L-lactate-dehydrogenase
MKDHQKIILVGDGAVGSSYAFACVNLSIGQEFGIIDIDKDRTIGDAMDLSHAVPFSTPKKIYSANYSDCHDADLVVVTAGTAQKPGETRLDLVNRNIKIMKGIVDEVMASGFDGIFLIASNPVDILTYATWKFSGLPKERVIGSGTSLDTARFRMSIADYLKVDARNVHGYILGEHGDTEFPAWSHTTVGGLPITEWISEDEQGAMDTIFVSVRDAAYEIINKKGATFYGVAAALARITKAILNNENAILPLSVYLDGHYGMNDIYIGAPAVVNRQGVRHIVEMNLNDKEKEQMKNSADTLKKVLDDAMKQID
>NC_021838.1|WP_003722740.1|827164_827788_+|50S-ribosomal-protein-L25/general-stress-protein-Ctc
MATTLEVQKRETTQHSEVTRLRSEGKVPGIIYGYKSENVPVSVDSLELIKAVRDNGRNAVFSVTVDGKKLNVLLHEYQVDPLKDVLVHVDLLAVDMNEEVETDVRVVLVGDAPGVKAGGVLQQIIHDVKVSATPEKLPETIELDISSLEIGDVLTTNDLPENKDYVVQAEEEETVVTVSAPRAEEEPTTTEAPEPEAVHGKDEEPVE
>NC_021838.1|WP_003725737.1|827877_828462_+|GNAT-family-N-acetyltransferase
MLDKSVPHISAIMVNHDATNYPEFHLPEGYSFCFYKDGLEEDWCRLQLETGQVLSMDSIRARFETEFGNEKEKLAKRCVFVEAPNGEIIGTAMLWDGNTFGEMASRIHWVAVLDSHGGKGIAKALLSKILGLNKSSFVYLTTQTGSYQAIYLYQKFGFEKYVGKTPENWKTVNFQEEKEAAWQIIENKIAEHQA
>NC_021838.1|WP_003725738.1|828568_829129_+|aminoacyl-tRNA-hydrolase
MKLIAGLGNPGKKYERTRHNVGFMVVDELSFRHQTPWKKSKFNGMTSEIIVGGEKMILVKPLTFMNASGECIRPLMDYYNIPIEDVVIVYDDLDLPVGKIRLRQKGSAGGHNGMKSIIQHVKTQEFNRIRVGVSRPLKGEVIHYVLGDFPKAEQPDIIAAIQKSADAIEDFAQTPFIEVMNKYNQK
>NC_021838.1|WP_003728167.1|829242_832782_+|transcription-repair-coupling-factor
MKGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSLMDVDRLFLYPADELISSELSISSPELRGQRVEALDFLLSGKPGIVIVPVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGIIDIYPITEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDIVKRLEKKMTHTLNELKENEDKQALVENLEEDLEMLRSGVKPDMFFKYIGLAYPDPASLFDYFPKNTAILLDEFGRILETEESLEREEAEWQTETLSRMETVRDVQVSHSFKKLLEANHSPKIYLSLFQKQMASMRVSKTTNIVYKQMQQFHGQMNVLKTELESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESTILKKESDVPKYGMVQFVIGTFQNGFELPLAKVAIISETELFNKKIKKVKKRQKLSNAERIQSYSELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGEDKLFIPVDQLDLVQKYVGAEGKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREFEEAFPYQETEDQLRSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVPVEIDIQADAYIPEYYITDGRQKIEMYKRFRNIETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMVGVGMEGTQLKITINVQNKPLKEWLYQVKSLAEKLRGAMKERASAEN

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Crispr_ID: NC_021838_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021838_3

2172636-2173963

Unclear

I-A

Consensus_repeat	Method
ATTTACATTTCATAATAAGTAGTTAAAAC	CRISPRCasFinder
ATTTACATTTCATAATAAGTAGTTAAAAC	CRT
ATTTACATTTCATAATAAGTAGTTAAAAC	PILER-CR
ATTTACATTTCATAATAAGTAGTTAAAAC	PILER-CR

20 spacers

cas2,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of NC_021838_3

>merge|NC_021838|3|2172636-2173963|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
TTTATGATTTCATAATAAGTAGTTAAAACATTTTTTTCATTTTCTAAGTCCTCATATTTCAAAAATTTACATTTCATAATAAGTAGTTAAAACAAAACTAGCGAATCAATACGGAATTAAGAATTACACATTTACATTTCATAATAAGTAGTTAAAACCCGTTCGCTCTGTAGAACAAAACTTCCCGGATTTCTTATTTACATTTCATAATAAGTAGTTAAAACTCCAAACTCCTTCCGCACATTGGGCAATATTTTATAATTTACATTTCATAATAAGTAGTTAAAACTAAATTACTTTCGAACAATGCCGCTAACGCTTCTATTTACATTTCATAATAAGTAGTTAAAACGTAATGTTCAAATTATAACTTCTGTTCTAGCACTTGTATTTACATTTCATAATAAGTAGTTAAAACGCAAAACAACAAATTGGAAAGATGTTTTTTTTCTATTTACATTTCATAATAAGTAGTTAAAACCGTGAACCTATTTATCAGAAACAACCTATCCAAAATTTACATTTCATAATAAGTAGTTAAAACATTGAGGTGTATTACTGTCGCCAGTTGAGTAACCAGATTTACATTTCATAATAAGTAGTTAAAACAAGTGATACAATGTGTTTTTTATTGTCGATGTGGACATTTACATTTCATAATAAGTAGTTAAAACCTCTACAATCAGTGCATTTCTTTCTTCCCATTTCCAATTTACATTTCATAATAAGTAGTTAAAACACTGGTATTGTTGCAGGTATAACACTACTTGTTACATTTACATTTCATAATAAGTAGTTAAAACGTAATTTGACTAAAAAGTATAATCGTAAAATTACGAAATTTACATTTCATAATAAGTAGTTAAAACAATTTATTCATAGCGGGTGTGGGAGGTTTTGAACTTATTTACATTTCATAATAAGTAGTTAAAACCAACTCGGCTTATTTTTTATGTCAAAAAGTAGGAAGATTTACATTTCATAATAAGTAGTTAAAACGTCGAGGTGTTAACTCTTTCATAAGGTCATAAACGAATTTACATTTCATAATAAGTAGTAGTTAAAACCTGCACCTGTCAAATCGAGTTTGTATCTTAAGGGGGAATTTACATTTCATAATAAGTAGTTAAAACCCCTTGAAAGTTTTCTTTCCGCTCTTATCATTAATATTTACATTTCATAATAAGTAGTTAAAACAATATTTAACTCAATAACCCTTGCTTGTACTGTAATATTTACATTTCATAATAAGTAGTTAAAACGCATGGGAACAATTTGATGCTCTCGGTTTAAGCATTGATTTACATTTCATAATAAGTAGTTAAAAC

>NC_021838|3|3|2172636-2173963|CRISPRCasFinder
TTTATGATTTCATAATAAGTAGTTAAAAC	ATTTTTTTCATTTTCTAAGTCCTCATATTTCAAAA
ATTTACATTTCATAATAAGTAGTTAAAAC	AAAACTAGCGAATCAATACGGAATTAAGAATTACAC
ATTTACATTTCATAATAAGTAGTTAAAAC	CCGTTCGCTCTGTAGAACAAAACTTCCCGGATTTCTT
ATTTACATTTCATAATAAGTAGTTAAAAC	TCCAAACTCCTTCCGCACATTGGGCAATATTTTATA
ATTTACATTTCATAATAAGTAGTTAAAAC	TAAATTACTTTCGAACAATGCCGCTAACGCTTCT
ATTTACATTTCATAATAAGTAGTTAAAAC	GTAATGTTCAAATTATAACTTCTGTTCTAGCACTTGT
ATTTACATTTCATAATAAGTAGTTAAAAC	GCAAAACAACAAATTGGAAAGATGTTTTTTTTCT
ATTTACATTTCATAATAAGTAGTTAAAAC	CGTGAACCTATTTATCAGAAACAACCTATCCAAA
ATTTACATTTCATAATAAGTAGTTAAAAC	ATTGAGGTGTATTACTGTCGCCAGTTGAGTAACCAG
ATTTACATTTCATAATAAGTAGTTAAAAC	AAGTGATACAATGTGTTTTTTATTGTCGATGTGGAC
ATTTACATTTCATAATAAGTAGTTAAAAC	CTCTACAATCAGTGCATTTCTTTCTTCCCATTTCCA
ATTTACATTTCATAATAAGTAGTTAAAAC	ACTGGTATTGTTGCAGGTATAACACTACTTGTTAC
ATTTACATTTCATAATAAGTAGTTAAAAC	GTAATTTGACTAAAAAGTATAATCGTAAAATTACGAA
ATTTACATTTCATAATAAGTAGTTAAAAC	AATTTATTCATAGCGGGTGTGGGAGGTTTTGAACTT
ATTTACATTTCATAATAAGTAGTTAAAAC	CAACTCGGCTTATTTTTTATGTCAAAAAGTAGGAAG
ATTTACATTTCATAATAAGTAGTTAAAAC	GTCGAGGTGTTAACTCTTTCATAAGGTCATAAACGA
ATTTACATTTCATAATAAGTAGTAGTTAA	AACCTGCACCTGTCAAATCGAGTTTGTATCTTAAGGGGGA
ATTTACATTTCATAATAAGTAGTTAAAAC	CCCTTGAAAGTTTTCTTTCCGCTCTTATCATTAAT
ATTTACATTTCATAATAAGTAGTTAAAAC	AATATTTAACTCAATAACCCTTGCTTGTACTGTAAT
ATTTACATTTCATAATAAGTAGTTAAAAC	GCATGGGAACAATTTGATGCTCTCGGTTTAAGCATTG
ATTTACATTTCATAATAAGTAGTTAAAAC

>NC_021838|3|2|2172636-2173963|CRT
TTTATGATTTCATAATAAGTAGTTAAAAC	ATTTTTTTCATTTTCTAAGTCCTCATATTTCAAAA
ATTTACATTTCATAATAAGTAGTTAAAAC	AAAACTAGCGAATCAATACGGAATTAAGAATTACAC
ATTTACATTTCATAATAAGTAGTTAAAAC	CCGTTCGCTCTGTAGAACAAAACTTCCCGGATTTCTT
ATTTACATTTCATAATAAGTAGTTAAAAC	TCCAAACTCCTTCCGCACATTGGGCAATATTTTATA
ATTTACATTTCATAATAAGTAGTTAAAAC	TAAATTACTTTCGAACAATGCCGCTAACGCTTCT
ATTTACATTTCATAATAAGTAGTTAAAAC	GTAATGTTCAAATTATAACTTCTGTTCTAGCACTTGT
ATTTACATTTCATAATAAGTAGTTAAAAC	GCAAAACAACAAATTGGAAAGATGTTTTTTTTCT
ATTTACATTTCATAATAAGTAGTTAAAAC	CGTGAACCTATTTATCAGAAACAACCTATCCAAA
ATTTACATTTCATAATAAGTAGTTAAAAC	ATTGAGGTGTATTACTGTCGCCAGTTGAGTAACCAG
ATTTACATTTCATAATAAGTAGTTAAAAC	AAGTGATACAATGTGTTTTTTATTGTCGATGTGGAC
ATTTACATTTCATAATAAGTAGTTAAAAC	CTCTACAATCAGTGCATTTCTTTCTTCCCATTTCCA
ATTTACATTTCATAATAAGTAGTTAAAAC	ACTGGTATTGTTGCAGGTATAACACTACTTGTTAC
ATTTACATTTCATAATAAGTAGTTAAAAC	GTAATTTGACTAAAAAGTATAATCGTAAAATTACGAA
ATTTACATTTCATAATAAGTAGTTAAAAC	AATTTATTCATAGCGGGTGTGGGAGGTTTTGAACTT
ATTTACATTTCATAATAAGTAGTTAAAAC	CAACTCGGCTTATTTTTTATGTCAAAAAGTAGGAAG
ATTTACATTTCATAATAAGTAGTTAAAAC	GTCGAGGTGTTAACTCTTTCATAAGGTCATAAACGA
ATTTACATTTCATAATAAGTAGTAGTTAA	AACCTGCACCTGTCAAATCGAGTTTGTATCTTAAGGGGGA
ATTTACATTTCATAATAAGTAGTTAAAAC	CCCTTGAAAGTTTTCTTTCCGCTCTTATCATTAAT
ATTTACATTTCATAATAAGTAGTTAAAAC	AATATTTAACTCAATAACCCTTGCTTGTACTGTAAT
ATTTACATTTCATAATAAGTAGTTAAAAC	GCATGGGAACAATTTGATGCTCTCGGTTTAAGCATTG
ATTTACATTTCATAATAAGTAGTTAAAAC

>NC_021838|3|3|2172700-2173569|PILER-CR
ATTTACATTTCATAATAAGTAGTTAAAAC	AAAACTAGCGAATCAATACGGAATTAAGAATTACAC
ATTTACATTTCATAATAAGTAGTTAAAAC	CCGTTCGCTCTGTAGAACAAAACTTCCCGGATTTCTT
ATTTACATTTCATAATAAGTAGTTAAAAC	TCCAAACTCCTTCCGCACATTGGGCAATATTTTATA
ATTTACATTTCATAATAAGTAGTTAAAAC	TAAATTACTTTCGAACAATGCCGCTAACGCTTCT
ATTTACATTTCATAATAAGTAGTTAAAAC	GTAATGTTCAAATTATAACTTCTGTTCTAGCACTTGT
ATTTACATTTCATAATAAGTAGTTAAAAC	GCAAAACAACAAATTGGAAAGATGTTTTTTTTCT
ATTTACATTTCATAATAAGTAGTTAAAAC	CGTGAACCTATTTATCAGAAACAACCTATCCAAA
ATTTACATTTCATAATAAGTAGTTAAAAC	ATTGAGGTGTATTACTGTCGCCAGTTGAGTAACCAG
ATTTACATTTCATAATAAGTAGTTAAAAC	AAGTGATACAATGTGTTTTTTATTGTCGATGTGGAC
ATTTACATTTCATAATAAGTAGTTAAAAC	CTCTACAATCAGTGCATTTCTTTCTTCCCATTTCCA
ATTTACATTTCATAATAAGTAGTTAAAAC	ACTGGTATTGTTGCAGGTATAACACTACTTGTTAC
ATTTACATTTCATAATAAGTAGTTAAAAC	GTAATTTGACTAAAAAGTATAATCGTAAAATTACGAA
ATTTACATTTCATAATAAGTAGTTAAAAC	AATTTATTCATAGCGGGTGTGGGAGGTTTTGAACTT
ATTTACATTTCATAATAAGTAGTTAAAACCAACTCGGCTTATTTTTTATGTCAAAAAGTAGGAAGATTTACATTTCATAATAAGTAGTTAAAACGTCGAGGTGTTAACTCTTTCATAAGGTCATAAACGAATTTACATTTCATAATAAGTAGTAGTTAAAACCTGCACCTGTCAAATCGAGTTTGTATCTTAAGGGGGAATTTACATTTCATAATAAGTAGTTAAAAC	CCCTTGAAAGTTTTCTTTCCGCTCTTATCATTAAT
ATTTACATTTCATAATAAGTAGTTAAAAC	AATATTTAACTCAATAACCCTTGCTTGTACTGTAAT
ATTTACATTTCATAATAAGTAGTTAAAAC	GCATGGGAACAATTTGATGCTCTCGGTTTAAGCATTG


>NC_021838|3|4|2173740-2173963|PILER-CR
	AAAACTAGCGAATCAATACGGAATTAAGAATTACAC
ATTTACATTTCATAATAAGTAGTTAAAAC	CCGTTCGCTCTGTAGAACAAAACTTCCCGGATTTCTT
ATTTACATTTCATAATAAGTAGTTAAAAC	TCCAAACTCCTTCCGCACATTGGGCAATATTTTATA
ATTTACATTTCATAATAAGTAGTTAAAAC	TAAATTACTTTCGAACAATGCCGCTAACGCTTCT
ATTTACATTTCATAATAAGTAGTTAAAAC	GTAATGTTCAAATTATAACTTCTGTTCTAGCACTTGT
ATTTACATTTCATAATAAGTAGTTAAAAC	GCAAAACAACAAATTGGAAAGATGTTTTTTTTCT
ATTTACATTTCATAATAAGTAGTTAAAAC	CGTGAACCTATTTATCAGAAACAACCTATCCAAA
ATTTACATTTCATAATAAGTAGTTAAAAC	ATTGAGGTGTATTACTGTCGCCAGTTGAGTAACCAG
ATTTACATTTCATAATAAGTAGTTAAAAC	AAGTGATACAATGTGTTTTTTATTGTCGATGTGGAC
ATTTACATTTCATAATAAGTAGTTAAAAC	CTCTACAATCAGTGCATTTCTTTCTTCCCATTTCCA
ATTTACATTTCATAATAAGTAGTTAAAAC	ACTGGTATTGTTGCAGGTATAACACTACTTGTTAC
ATTTACATTTCATAATAAGTAGTTAAAAC	GTAATTTGACTAAAAAGTATAATCGTAAAATTACGAA
ATTTACATTTCATAATAAGTAGTTAAAAC	AATTTATTCATAGCGGGTGTGGGAGGTTTTGAACTT
ATTTACATTTCATAATAAGTAGTTAAAACCAACTCGGCTTATTTTTTATGTCAAAAAGTAGGAAGATTTACATTTCATAATAAGTAGTTAAAACGTCGAGGTGTTAACTCTTTCATAAGGTCATAAACGAATTTACATTTCATAATAAGTAGTAGTTAAAACCTGCACCTGTCAAATCGAGTTTGTATCTTAAGGGGGAATTTACATTTCATAATAAGTAGTTAAAAC	CCCTTGAAAGTTTTCTTTCCGCTCTTATCATTAAT
ATTTACATTTCATAATAAGTAGTTAAAAC	AATATTTAACTCAATAACCCTTGCTTGTACTGTAAT
ATTTACATTTCATAATAAGTAGTTAAAAC	GCATGGGAACAATTTGATGCTCTCGGTTTAAGCATTG
ATTTACATTTCATAATAAGTAGTTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_021838.1\|WP_003726690.1\|2167194_2167947_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NC_021838.1\|WP_003731266.1\|2166644_2167088_-\|hypothetical-protein	unknown	unknown	unknown
NC_021838.1\|WP_003731264.1\|2172194_2172563_+\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|226282
NC_021838.1\|WP_003721310.1\|2174160_2174439_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_021838.1\|WP_003727298.1\|2182332_2183763_+\|CapA-family-protein	unknown	unknown	gnl\|CDD\|225399
NC_021838.1\|WP_072217746.1\|2169497_2170502_-\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NC_021838.1\|WP_003731262.1\|2176998_2177781_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NC_021838.1\|WP_003727299.1\|2184341_2186171_-\|lmo0514-family-class-1-internalin	unknown	unknown	gnl\|CDD\|380190
NC_021838.1\|WP_003731263.1\|2174741_2176931_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_021838.1\|WP_003727295.1\|2170633_2172049_-\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NC_021838.1\|WP_003731269.1\|2162352_2163828_-\|hypothetical-protein	unknown	unknown	unknown
NC_021838.1\|WP_003731259.1\|2180321_2181044_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NC_021838.1\|WP_003727297.1\|2181396_2182212_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NC_021838.1\|WP_003726689.1\|2168148_2169465_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|133432
NC_021838.1\|WP_003731267.1\|2164937_2166599_+\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
NC_021838.1\|WP_003731268.1\|2164057_2164798_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NC_021838.1\|WP_003731270.1\|2160863_2162360_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227617
NC_021838.1\|WP_003731261.1\|2177758_2178628_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NC_021838.1\|WP_003731260.1\|2178617_2180306_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
NC_021838.1\|WP_003721301.1\|2183809_2184241_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180

Protein	Function_ID	Function_description	E-value
NC_021838.1\|WP_003726690.1\|2167194_2167947_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	7.01666e-64
NC_021838.1\|WP_003731263.1\|2174741_2176931_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	9.60751e-60
NC_021838.1\|WP_003731264.1\|2172194_2172563_+\|DUF1304-domain-containing-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	1.68051e-41
NC_021838.1\|WP_003721310.1\|2174160_2174439_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.1393e-30
NC_021838.1\|WP_003727298.1\|2182332_2183763_+\|CapA-family-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	2.66378e-99
NC_021838.1\|WP_072217746.1\|2169497_2170502_-\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	5.54874e-21
NC_021838.1\|WP_003731262.1\|2176998_2177781_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	3.98256e-24
NC_021838.1\|WP_003727299.1\|2184341_2186171_-\|lmo0514-family-class-1-internalin	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	2.70695e-122
NC_021838.1\|WP_003731261.1\|2177758_2178628_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	3.68641e-55
NC_021838.1\|WP_003727295.1\|2170633_2172049_-\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	3.97112e-80
NC_021838.1\|WP_003731259.1\|2180321_2181044_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.25848e-32
NC_021838.1\|WP_003727297.1\|2181396_2182212_+\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	4.22926e-50
NC_021838.1\|WP_003726689.1\|2168148_2169465_+\|6-phospho-beta-glucosidase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NC_021838.1\|WP_003731267.1\|2164937_2166599_+\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	7.67986e-148
NC_021838.1\|WP_003731268.1\|2164057_2164798_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	9.74e-52
NC_021838.1\|WP_003731270.1\|2160863_2162360_-\|hypothetical-protein	gnl\|CDD\|227617	COG5298, COG5298, Uncharacterized protein conserved in bacteria [Function unknown].	0
NC_021838.1\|WP_003731260.1\|2178617_2180306_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	3.08159e-26
NC_021838.1\|WP_003721301.1\|2183809_2184241_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27

>NC_021838.1|WP_003731264.1|2172194_2172563_+|DUF1304-domain-containing-protein
MAILAFILTFIVMIEHIYIMILEMFFANTNLAAKTFGVEKELLANKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGMAETVQIFFLSCVVVAALFGGATSSKGILVKQGLPAVLALVVVLLV
>NC_021838.1|WP_003727295.1|2170633_2172049_-|multidrug-efflux-MFS-transporter
MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGESGWGSATVLVSIIVGGLALGLFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQTNGLNQLPPKLYPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGVGPEQMVASLTAGIQNAFVFGLIMACIGLLCSLFIRKAK
>NC_021838.1|WP_072217746.1|2169497_2170502_-|ROK-family-transcriptional-regulator
MAIPRDLKELNKKNIKSILRQQGAMTKAEIAEVTGLSVVTVNKLIRDLVENDEILEQDNSVATGGRRAVSYEINPNFQQVLVISLQEKWKKITYSFSVYNLLGEPEFVEDMSGEDLDITALKRNTKDLVCAFPKISCVVIGVPGIEIGGKLRAMDFPLLLNVQLRETLEAEVNLPVLVETDTNAAILGYKNRPVKEENIVGLYYPERFPPGAGLLMNGEILKGQNGLAGEIKHMPLQVDWDNFDFSVDEIKAHIRKMVLLTMSFYDPETIVLYTNFYFGQKDFTEELTEELKQVYPYAVLPEIVLSRKFTTDYRIGLLAFGIDYLENNMTDWRI
>NC_021838.1|WP_003726689.1|2168148_2169465_+|6-phospho-beta-glucosidase
MTKGIKIATIGGGSSYTPELIEGFIKRQDELPVRELWLVDVEAGREKLEIVGNLAKRMVEKAGVDMEVHLTLDREEALKDADFVTTQLRVGLLDARVKDERIPNSYGVVGQETNGPGGMFKGLRTIPVILDICKDMERLCPDAWLINFANPAGMVTEAVLRYSNQKKVVGLCNGPIGIERNIAETLGVDVSEIYVEFVGLNHMVFAKTVYHNGKDVTKDVVFKMTEDEAGSSLKNINATGWDKTFLRTLNMIPIDYLRYYWQTKQQLEDQARAYAEHGTRAEVVKKVEAELFELYKQEELAEKPKQLEQRGGAYYSEAACNLINSIYNDKRDIQIVNTRNNGAILDIDPDSAVETNCVITRQGPIPLASGRLPIAINGIIQEIKTFERLTAEAAVTGDYDKALLAMTINPLTPSESVAREMLDELLEAHKEYLPNFFK
>NC_021838.1|WP_003726690.1|2167194_2167947_-|MurR/RpiR-family-transcriptional-regulator
MLFLDKNLELNDTELDIYNYIVANLDKVVYMRIRDLATEAHVSTTTILRFCRKFGCNGFSEFRVKLQLYLEEQKLAQIDMADETTYIDFLKRTAQPEFKAQIQNAVEILRDRELVLFAGVGSSGVIAEYGAIYFSSLFTLALHIEDPLNHPFYHLSSKLSDKICMIAISVEGENEDIIRYIHQLKAQNCKVISITNSAKSTIARLSDANIAYYINKEMYQEANITSQLPALYTIENIAREIRTQIDKEKM
>NC_021838.1|WP_003731266.1|2166644_2167088_-|hypothetical-protein
MYSNRKEKVVFTLIMCSLMILCMSSYNIFLENGIGANSFMIILKAFVPFLFIGFLLDFFVVGKIVYRLHAHLVSEDASKFKKIIMMQLLMVTFMCVLMSTLSLIVNQGEWSHLGILILRNYFVALFLQIFIVSPFVRLISPRIFALL
>NC_021838.1|WP_003731267.1|2164937_2166599_+|SulP-family-inorganic-anion-transporter
MFKHILLSLNGYKISYLRNDVISGVGVAALTIPVAMGYAQVAGLPPIYGLYASFLPVIAYVIFASSPQLVFGIDATASAITGSIILGTAGLAAGSKEAIALAPILAFFCAIFLVLFSVLKLGRFAKYISAPVLSGFISGLSVSIIMGQIPKIMGLKESGDSFFSSLGIIFGQFFQSNWISFAMGVVTVIIVITCKKVIPKIPMSLVVLILGTMAAYFFKLDQYNVDIVGKIPVGFPSLALPDFGASSWALAIGGGLVCAIATFAGSLLPSESFAMRNKYTIDDNRELFAYGISNFVAAFSGCSPASASVSRTAANEQFRGKTQMVSIVAATIIALIVAFLSGLLYYMPQPVLSGIVFAALVGIIDVDVLKGLFKVSRREATVWIVAALGTLLVGVIFGVLLGIFLSFINVVSRSMKSPIAILGVIEGRHGYFDLKRKPEAKPIPNVVIYRYSASLFFGNFNKFADGLKEAVQDDTKLVIFEASAIINIDTTATESMKDLLKWLDDKGIEYYFADLIDHLKTSFRKHDLGYIIDNGYTKKTVEDALEAYYAEHK
>NC_021838.1|WP_003731268.1|2164057_2164798_+|MerR-family-transcriptional-regulator
MQIKELAELTGVSVRTLHHYDKIGLLVPQKDDRNGYRIYSENDVDKLQQILFFKELDFPLKKIKQILDDPFFDKNVALDLQRHLLIEKKQRIETMLATLDQTIRNEKGEITMTNKEKFTGFDFSTNPYEEEAKKRWGDKVVEKANEKVNNMNEKEKLTLKESFDAEFRHLASVRELSPESEEAQLAIDHFFHYLNDTHGNIYSLEAFADLGEMYVADERFTKNIDQFGDGLSHFLKEAMNIYAKNK
>NC_021838.1|WP_003731269.1|2162352_2163828_-|hypothetical-protein
MIGKVKSISMWLWHHLTPQIFAVICVFIITLIALFMPPYIGMADNGDFFRIFSSNGLFVNNTNYDALQFGHFVKEFGIYQYFNENQVAIYSSQSIFIQMALLLNKLFWSTTVFDVRFLGGLQLALLLPAIYLLVAGLTAKMKGWPGYVVAALTVFIFADTAYTAYFNSFFSEGLILIMMLYISAGFLLLYQHKYNDYAMLGLIFVASLILITAKQQNAPIAVVIAVCGILVFFIRKNRAFRISAAATFFVIFLSGVVMYAFIPGEFVTINQYQTMTRGVLLDSENPEKSLEEMGMNSEFALLKGTNFYQKYKMIDLDSKLMEKEFYPNYNFVTVLSYYLENPKQFGKMLDLSAQNSFSIRPFEMGNFEKATGYKFKEKTHFFSIYSDVKEKLAPAKFTFLILWALVFLICYGVSAFKHFREKNIRGMLLFDLVVLLIGSGFAVILVTIVGDGEADLTKHNFLFNVCFDLTMLIGAASLLEVYMKKRGERNA
>NC_021838.1|WP_003731270.1|2160863_2162360_-|hypothetical-protein
MRKKLIVSILLAFMIFVVGGHSAIAKSDDGVVVFYDSLATGTENEGNMDALLRMLNSLGKRVTIYSWEENPDLSQTSEIIVLQNKKDGLSNKWTNKLAKSKAKIAYIGGNPPTFLTDKLQLKTKAITEASITIQTQAGLSGKPQLVNETNLITSYKGTSFGEMDAAENGQAAYGVQAGNYAYAPLFQADNTSEFALMDVLKALFDIKTTTNQYAFITGVNPFIDFDLLKKTADTFYEKGIPFIVSAGPVFYNQDFQAARNYAEILRYVQAKNGTIMMNVPAVTYGDSPAGELEKIMQKSVHFFAENDVAPLGVTAELYWNFDKVYGVEGFAPFNTGILLPNQKIIHTTKVNNGSAFEKSPYSVANDFYATTTEGRNFPIDIAITYSFFDNEKELKAAAEELATDNISDFRFQDHGVKTNKDTIESSAGSLYINNQSVTLDGDLNYIKTKNKTVKQAGSLEGFFGYQNTFFTIVIVLSLGIIGVLFVFGYRLYMKKYMK
>NC_021838.1|WP_003721310.1|2174160_2174439_-|CRISPR-associated-endonuclease-Cas2
MYVILIYDISIENGGAKVWRNVFKICKKYLTHVQKSVFEGEITPALLVKLRMELDKYIRDDQDSVIVFSSRQQRWLEKEFWGLTDEKTSNFF
>NC_021838.1|WP_003731263.1|2174741_2176931_-|CRISPR-associated-helicase/endonuclease-Cas3
MQKYLAKSNPEETIQEHTDNLLKNYQRLKKLYPAVEIDWYLLELVCLLHDLGKMNLLFQTKLGNASGKGKEIPHGYLSVAFVPDSKLEEMGYSEDEIKVVYQAIARHHERKYDFSDSEWKKEIIKLEEQWAGFIYSQLGENAEYSSEVEMLYFYPGSRIFEGNSAADAETFKKYVLLKGLLNRIDFAASGGIDVELENDFLMDSMEVQLAHFKAENPEADWNALQKYMMQHQNENIVVIAETGMGKTEAGLLWLGNNKGFFTLPLRAAINAIYERITKNIVTTNQAERVGLLHSETYSQYLLHEGNAEMDIDEYYTRTRQMSLPITICTLDQLFDFVFRYAGFEHKLATLSYSKVIIDEIQMYSPDLLAYLILGLSYIDKFGGKFCIMTATLPGIVTDLLLENGVDFVQPEEKFVSSRIRHSMEMVHTEVESEFIKPFFNNNRILVICNTISKAKKIYSELKEHFQGEEIHLIHSQFIKRDRSAKEKAIFEDGQKDSTKKCIWVATQVVEASLDIDFDLLFTELSDVNGLFQRMGRCYRNRRLDVDTNVYVFDGGAKVCSGVGIDNFIDKLIFENSKTILNEHAGVLTEEKKMELVEQVYSTEALSGSKFYKELIRTINYVKAFESYLMNKADVRRRFRNINSVSVIPEEVWQDNAEEINSYFVTLRKTSKEISTKEKIIARTNLAEFMVSIPDYLYKKGESVVREINRYESVIEFKCGYSSDVGVFMR
>NC_021838.1|WP_003731262.1|2176998_2177781_-|type-I-B-CRISPR-associated-protein-Cas5
MLIMKAIRVKLWQDLVNFKKPTSFQLKETYPLPPYSTVIGMVHTLCGFTSYHEMKISIQGKYFSKVNDLATRYEFKNGMTYDASRHQIKVDKYGVSRGVSTVELLVDLELLLHIIPEDPSLVPIIEKAFREPIEFPSLGRREDIATIQKVEVVDVEKRQPKKSTEISDGYNAYVPISLTENNSVHFKSHESSVGRDKLLGTRYLLTEKYERVNHGTEKAPKFFRKWRKKDVIYSSRIFVSKKDVFFFDEDDYLVFIEEEE
>NC_021838.1|WP_003731261.1|2177758_2178628_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKNKGLAMTIIFQAESANYGESLGNISSLKKISRNNGDQYTYISRQAIRYNLMDQIGEKEAPVKAEGGGDKKVIQFLSEATITDFPELDFFGYLKTEKGSGGQKRSAKVRLSNAISLETFKGDLDFLTNKGQADKLNENMNIAQAEIHKSYYRYTMTIDLDQIGIDGEIALENKEKARRVKKLMDTVAFLYRDIRGRREDLKPLFVIGGVYDVKNPVFQNVVDVADNNIVIKNIKDLLTYEDIKENTRVGIIDGQFANSDEVKAELKAESVPAFFNDIKGKIDAYYESN
>NC_021838.1|WP_003731260.1|2178617_2180306_-|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MRTEIEVRANDWLINAGLIGFLNIVGKENVRIDGQSIYFTADLLEDFETKYFNFFIQEFKETLSWYKIVSYKETMEQFRIDEFASFDEVALGNLNKYMKDVVKFYLKKVNYIKVFPLIDPSANVTKWLENLNTINLTKKQRWDEVKADIIEEVKQTYTQLDLIIDFCASEKGLQYLGAKNLIYSVINKGWSGVSFLFKQTKFIDPYLDYKTTFVDSVLDYLDTDLSKAKYNCFNCNQPIKNLKLDLSFMNDVGFDTARKTSHVWDFNNDVATCPICRLIYSCVPAGFTYVYGEGMFVNDSYGVEELHRVNERMRNSILSFNQDGINSTNTYRALVESITMEHENNRRYELADIQLVRYENEHYRFNLLSKKMLHIVNDSKGILKGLIRCGYKEGNLNVNLYKEVLQHLMNNENLFTLIHKLIYYKQTSVNGLYYNMGHVSGILDINTKFLKEMEVMTNISQNQLWFVQNCGKEFKEGYVKKKSENKISGITYKLLNSLKVNDKDGFMDTLLNSYSYLAMPIPDVFIKMFSDNEAFKSVGYAFMLGVGGEKTKKEDGGNTDEK
>NC_021838.1|WP_003731259.1|2180321_2181044_-|CRISPR-associated-endoribonuclease-Cas6
MRLKINCDFDSKIIPKDFQSKVVSLFKAGIMKSSPERYENLFGGNKHKQYTFSVYLPKPQNKGAEIQLNEANCIINFSTGDAETGIIFYNALISLRGSKILFGAGNNITIKNIQIVPEKKIIGNRTILRTLSPVVSRDHNRETFKNWFYSFEDEEFEPTLKRNMLPYLIDAFGEQARYDLEKLKITPISMKKVVVYCHEIHIESSVGIFELEAEAYLQKYLVENGLGTMTGSGFGMIEQL
>NC_021838.1|WP_003727297.1|2181396_2182212_+|histidine-phosphatase-family-protein
MKKNIFKLMMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGISPKDFADSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>NC_021838.1|WP_003727298.1|2182332_2183763_+|CapA-family-protein
MKRRTYVIITGLVLIFVAGAFWITNSTNQSDQKATQTEPLKKTSPANVKTISSEAKKTLNSLASSGADKASISDLNQLIKELKSYPVEKNDSGAYLQNLTACLEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAESAFTNATKAENKKWRIKSDPAHVAFLPASGVEAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNTDAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKENTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>NC_021838.1|WP_003721301.1|2183809_2184241_-|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NC_021838.1|WP_003727299.1|2184341_2186171_-|lmo0514-family-class-1-internalin
MKKALKLFLATICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSLNNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSISGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSARLSITDDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMNSYTISSGTYDQYFDISHTLDLTADESFDYNQYDATSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITADSQISYKKESTKSVDEFLQEIHSSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDGGHVNPVPPTPEVKPTPQEETDPTIIPEPQSENSEDPVKENNAKTEEKANKTSLTTKENKVEKADKAEKTNQPKTKALPQTGDTNKSTLPIAGVMLSLAALLIFRKSKS

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Crispr_ID: NC_021838_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021838_4

2227324-2227908

Orphan

Consensus_repeat	Method
CATATNAGTTACTGAACTNGTATCAAAATTACTTACATC	CRT

7 spacers

The CRISPR arrays of NC_021838_4

>merge|NC_021838|4|2227324-2227908|CRT
CATGTTAGTCACTGAACTGGTATCAAAGGTACTTAAATCAAGCTTCTCCAGTTTTTCATTATCAGAAAACATGGCAGCCATATTAGTTACTGAACTCGTATCAAAATTACTTACATCTAACGCTTCAAGACTAGTACAACCAGCAAACATGGCACGCATATCAGTTACTAAGCTCGTATTAAAATTACTTACATCCAACTTCTCAAGGGCGCTACAATTTCTAAACATTTGAACCATTGCAGTAGCGGAACTGGTATCGAAATTACTTACATCTAGTTTCTTCAGTTTTTCACAGCCATTAAACACTCTATACATATCAGTTACTGAACTCGTATCAAAATTACTTACATCCAGCTCTTCAAGACTAGTACAATCTTCAAACATGGCATACATATTAGTTACTGAACCGGTATCAAGGTTGCTTACATCCAGCACCTCAAGGTTTCTATTATCATAAAACATGTAAGACATATTAGTTACTGAACTCGTATCAAAATGACTTACATCCAGTTCCTCAAGTGCCCTACAGCTGTTAAACATATCCCACATAGTAGTTACCGCACTAGTATCAAGACCACTCAAATC

>NC_021838|4|3|2227324-2227908|CRT
CATGTTAGTCACTGAACTGGTATCAAAGGTACTTAAATC	AAGCTTCTCCAGTTTTTCATTATCAGAAAACATGGCAGC
CATATTAGTTACTGAACTCGTATCAAAATTACTTACATC	TAACGCTTCAAGACTAGTACAACCAGCAAACATGGCACG
CATATCAGTTACTAAGCTCGTATTAAAATTACTTACATC	CAACTTCTCAAGGGCGCTACAATTTCTAAACATTTGAAC
CATTGCAGTAGCGGAACTGGTATCGAAATTACTTACATC	TAGTTTCTTCAGTTTTTCACAGCCATTAAACACTCTATA
CATATCAGTTACTGAACTCGTATCAAAATTACTTACATC	CAGCTCTTCAAGACTAGTACAATCTTCAAACATGGCATA
CATATTAGTTACTGAACCGGTATCAAGGTTGCTTACATC	CAGCACCTCAAGGTTTCTATTATCATAAAACATGTAAGA
CATATTAGTTACTGAACTCGTATCAAAATGACTTACATC	CAGTTCCTCAAGTGCCCTACAGCTGTTAAACATATCCCA
CATAGTAGTTACCGCACTAGTATCAAGACCACTCAAATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_021838.1\|WP_003731687.1\|2233219_2234770_-\|hydantoinase/oxoprolinase-family-protein	unknown	unknown	gnl\|CDD\|223223
NC_021838.1\|WP_003727314.1\|2219866_2220226_-\|DUF3139-domain-containing-protein	unknown	unknown	gnl\|CDD\|371476
NC_021838.1\|WP_003731690.1\|2241128_2243288_+\|transglutaminase	unknown	unknown	gnl\|CDD\|376628
NC_021838.1\|WP_003731247.1\|2218980_2219541_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379534
NC_021838.1\|WP_003728992.1\|2235863_2237147_-\|cytosine-permease	unknown	unknown	gnl\|CDD\|271377
NC_021838.1\|WP_003740428.1\|2237280_2238876_-\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225306
NC_021838.1\|WP_003721242.1\|2239031_2239979_+\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NC_021838.1\|WP_003728093.1\|2234762_2235863_-\|DUF917-domain-containing-protein	unknown	unknown	gnl\|CDD\|226065
NC_021838.1\|WP_003721253.1\|2223559_2224045_-\|hypothetical-protein	unknown	unknown	unknown
NC_021838.1\|WP_003725196.1\|2224064_2224538_-\|hypothetical-protein	unknown	unknown	unknown
NC_021838.1\|WP_009918902.1\|2221842_2222805_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224004
NC_021838.1\|WP_003731689.1\|2239983_2241132_+\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NC_021838.1\|WP_023553878.1\|2231045_2232584_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|368260
NC_021838.1\|WP_003725185.1\|2243404_2244160_+\|DUF4866-domain-containing-protein	unknown	unknown	gnl\|CDD\|379782
NC_021838.1\|WP_003740435.1\|2223226_2223532_-\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|273478
NC_021838.1\|WP_012681110.1\|2220253_2221081_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368573
NC_021838.1\|WP_014929914.1\|2228700_2230782_-\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NC_021838.1\|WP_014930657.1\|2224603_2226361_-\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NC_021838.1\|WP_003725199.1\|2222884_2223151_-\|hypothetical-protein	unknown	unknown	unknown
NC_021838.1\|WP_003725207.1\|2217170_2218871_-\|oleate-hydratase	unknown	unknown	gnl\|CDD\|227060

Protein	Function_ID	Function_description	E-value
NC_021838.1\|WP_003731687.1\|2233219_2234770_-\|hydantoinase/oxoprolinase-family-protein	gnl\|CDD\|223223	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	1.16889e-106
NC_021838.1\|WP_003727314.1\|2219866_2220226_-\|DUF3139-domain-containing-protein	gnl\|CDD\|371476	pfam11337, DUF3139, Protein of unknown function (DUF3139). This family of proteins with unknown function appears to be restricted to Firmicutes.	1.02958e-22
NC_021838.1\|WP_003731247.1\|2218980_2219541_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379534	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region. This domain is a tetracycline repressor, domain 2, or C-terminus.	2.00111e-25
NC_021838.1\|WP_003721242.1\|2239031_2239979_+\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	7.47241e-102
NC_021838.1\|WP_003740428.1\|2237280_2238876_-\|PucR-family-transcriptional-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	2.42853e-59
NC_021838.1\|WP_003731690.1\|2241128_2243288_+\|transglutaminase	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	4.24069e-28
NC_021838.1\|WP_003725185.1\|2243404_2244160_+\|DUF4866-domain-containing-protein	gnl\|CDD\|379782	pfam16160, DUF4866, Domain of unknown function (DUF4866). This family consists of uncharacterized proteins around 250 residues in length and is mainly found in various human gut Firmicute species and abundant in human gut metagenomic datasets. The function of this family is unknown.	2.72643e-122
NC_021838.1\|WP_003728093.1\|2234762_2235863_-\|DUF917-domain-containing-protein	gnl\|CDD\|226065	COG3535, COG3535, Uncharacterized conserved protein [Function unknown].	0
NC_021838.1\|WP_009918902.1\|2221842_2222805_+\|HD-domain-containing-protein	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	3.39526e-44
NC_021838.1\|WP_003731689.1\|2239983_2241132_+\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.71221e-52
NC_021838.1\|WP_023553878.1\|2231045_2232584_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|368260	pfam05043, Mga, Mga helix-turn-helix domain. M regulator protein trans-acting positive regulator (Mga) is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions. This domain is found in the centre of the Mga proteins. This family also contains a number of bacterial RofA transcriptional regulators that seem to be largely restricted to streptococci. These proteins have been shown to regulate the expression of important bacterial adhesins. This is presumably a DNA-binding domain.	4.85465e-19
NC_021838.1\|WP_003740435.1\|2223226_2223532_-\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	4.51255e-05
NC_021838.1\|WP_012681110.1\|2220253_2221081_-\|hypothetical-protein	gnl\|CDD\|368573	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family. Amidase_YiiX is a family of permuted papain-like amidases. It has amidase specificity for the amide bond between a lipid and an amino acid (or peptide). From the structure, a tetramer, each monomer is made up of a layered alpha-beta fold with a central, 6-stranded, antiparallel beta-sheet that is protected by helices on either side. The catalytic Cys154 in UniProtKB:Q74NK7, Structure 3kw0, is located on the N-terminus of helix alphaF. The two additional helices located above Cys154 contribute to the formation of the active site, where the lysine ligand is bound.	0.00019582
NC_021838.1\|WP_014929914.1\|2228700_2230782_-\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	3.34186e-29
NC_021838.1\|WP_014930657.1\|2224603_2226361_-\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	3.73841e-28
NC_021838.1\|WP_003728992.1\|2235863_2237147_-\|cytosine-permease	gnl\|CDD\|271377	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain. This NCS1 subfamily includes Escherichia coli CodB (cytosine permease), and the Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), and vitamin B6 transporter Tpn1. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	1.15029e-95
NC_021838.1\|WP_003725207.1\|2217170_2218871_-\|oleate-hydratase	gnl\|CDD\|227060	COG4716, COG4716, Myosin-crossreactive antigen [Function unknown].	0

>NC_021838.1|WP_014930657.1|2224603_2226361_-|BspA-family-leucine-rich-repeat-surface-protein
MKKFSMRVVLIISVLFIAFGSANVSIAQERDTTNKLPEEELGSLDTSNIIAEEVAQEKPAEVEQLEEIPITDELMQNPDVLEQPVADSDDTDLTVVSSGDFWTIYRNTVNNEYSLCMFGNVPSSRPTAWNSYLKSIKHIEIEEATLTGSFEAYFRGTVFTVLESVRIEQCNLSGVTSFDMAFYNSGIEKVIIRDNDYPTAPSLLATTYMFSLCRNLSELDLSGLDTSAVTNIYGMFQNCISLEELDLSNFDTSSVTNMYSTFSGCRSLEKLDVSNFDTSSVTTMWAMFFECSSLEELDLSNFDTSSVTTMSYMFQLCPALKSLYLDNFTDAAIMTGMFGGTTSLTYLFVSHNLSTFNNLENTSWYDEKNWVQFSNLSQLQTYHRQQSEPTGYRKGAFLSLTMDAMGGQFEDAEEQKVQNKVSGEYWDEIVPVKEGHYFDGWYLNQDCTNKFDFSLPADASITIYAKWIENYTVIIPASISLNETSELKVEGINRGDKNLSVGLNRTAMSVSESNKLTLANTADTTVQCLAPLSWDGSETNPEKAILTLAPGSEITEGDAVMAIEAPENIQAGKYTGNLVFSIKYE
>NC_021838.1|WP_003725196.1|2224064_2224538_-|hypothetical-protein
MKKKRVVIISLLLLLVSVIGISSYFLFKDKINLLDVDHSAVDWNGKKQKDTSGEENTIAIPGFEKVTLYANETTQAVNFHNPEINDCYFKISLIHPDGSVLWISDLIEPGKGMYSIELEKTLAVGEYENAVLKYECFSLNDQSPLNGSEINLKLVVV
>NC_021838.1|WP_003721253.1|2223559_2224045_-|hypothetical-protein
MNKLVLSTLSVAAMGMVFFSGGTAYAADKEGNTVVEYSVEGDYTLVVPEKVNLSNDNATEMSVKTINRNLEPGKEVEVTLSSGLSADGEIELQRVGAISDVITSSFKSNNSVVPMANPVIGSFSGYAMEETEVSKIQIGNPQGDKKAGAYQTTLTFTAAFK
>NC_021838.1|WP_003740435.1|2223226_2223532_-|LPXTG-cell-wall-anchor-domain-containing-protein
MKRKLVLAMVLISFCGMFLLSPERVQASQTVVEVFISEDDLDVSEENIQEIPKKELAASSDKDNKQPILPKAGDTVTNYTLLGLVLVLIWLIMQRKRKKKE
>NC_021838.1|WP_003725199.1|2222884_2223151_-|hypothetical-protein
MARIEYGEEIQKSLLVLYSRGSTIDSICKEYGIPRYEFHKWMKLHDADKLETKEVKTFLQIRELKQQKNKLEEEILFLNEAINLLESP
>NC_021838.1|WP_009918902.1|2221842_2222805_+|HD-domain-containing-protein
MKITDPLYGTFEIEPVLAELIQSPLVSRLAYVHQGGSSYLVNPLWDLSRLDHSIGVMLFIRKFGGSLEEQIAGLLHDVSHTAFSHVVDYALDFEEEDYHEQIFEDFVKTSTIPAILEKYGYSFEGIFDDISKWKILEQEAPELCADRIDYTLQDLYRHGKISLAEVEEFLQALVMVDGRLYLANIALAEWFVAQYYSEVIDYFYDPLNVYSYEILAEAMRIAFQQETITNADLRLTDAELLAKLNANSDAREKIQLLESPHLEENEVDFTYHHKKKMRLINPSVLVDGRLIPADELSEKVREMNDWASEKSKHGIYIKVT
>NC_021838.1|WP_012681110.1|2220253_2221081_-|hypothetical-protein
MKKRLIGIITALLLVSGILLSPQMAQAETKVDYDALYQQGVSEGIINKADVSLETWIKENESEYNQVYQDGLKDGVYDASLSYEEWIKLNNYGQPPVVDENWEEVPQKPMLKGVYKGYNIKKGDILITNGTSSSGLLGHAAIANGNEYILDIPGAGKTTRQVPTSKWMSDYDPEGWVKVYRLKDSSVANAAANWADKNYYSTKGTSKQNIFPKYGMTGSRYSKNPTYCSKIVLQAYYFGTGNKPVVQVFPSLVTVYDLPNYFSKAYKPQQVKYFK
>NC_021838.1|WP_003727314.1|2219866_2220226_-|DUF3139-domain-containing-protein
MKKYKKWWITIGLVLIICIIGYIYWFAIPKHTANEAVDDYLAAQKINSTQVKTRDIQKDWTRGGYYVTIVFKDDPNLVYEYNYNSKRNTPYHINLLVFKDGSSQEDDQVKHPPLQEQKD
>NC_021838.1|WP_003731247.1|2218980_2219541_-|TetR/AcrR-family-transcriptional-regulator
MAESLITKKAIAGGLMELCQHKRFEKISIADITNICGLNRQTFYYHFTDKYDLLTWTYENDFFHCLADGITLENWDKHVLKMLESIKENADFYKNTVSADASILSFCFSKLTNSLFMDLFEKIDKNGAVNEADRVFYAEFFSYGCSGVLIKWITRGFKEAPETIANQLFRLAKDTEFLANSMYREN
>NC_021838.1|WP_003725207.1|2217170_2218871_-|oleate-hydratase
MKNKKRTLVALTGAAIGTGIAAKKISEQKAAEKERAVDEAIKARYYGDKQVYFVGGGIASLAGAVYLIRDANFDGKNIHIIEGMHILGGSNDGAGSVEHGFVCRGGRMLNEETYENFWDLFSSIPSLDMPNFSVTEEILNFDHLHPTHAQARLVDKDRNILDAHSMGFNNNDRMLMTKLLATPEEKLDNLTIRDWFDEHFFETNFWFMWQTTFAFQKWSSLFEFRRYMNRMMLEFSRIDTLEGVTRTPLNQYESLILPLKTFLDKHHVDFTINQTVEDIDFKDAPGITATALHLSDGSTIKLGPDDDVIMTNACMTDSATLGDMNTPAPKPEEKPISGELWYKVAQKKPNLGNPEPFFAHEEETNWQSFTVTCHGDKLLKRIERFTGNIPGSGALMTFKDSNWLMSTVVAAQPHFKAQDANTTIFWGYGLYPDRVGDFVKKPMKECTGEEILYELMCHLNWQDDFEEIKADIINVIPCYMPYIDAQFEPRAMSDRPAVVPEGSTNFAMISQFVEIPKDMVFTEEYSVRAARIAVYTLLDIDKKICPVTPHNRDPKVLAKATQTMFR
>NC_021838.1|WP_014929914.1|2228700_2230782_-|BspA-family-leucine-rich-repeat-surface-protein
MKKFSMRVVLIISVLFIALGNANVSIAQERDTTNKLPEEELGSLDTSNLIAEEVAQEKPAEVENLEEIPTTDELMQNPEVREQPVADSDDPDLTAVSSGDYWTIYYNSANDEYSLRMFGNVPSSKPSAWNSYLKYIKHIEIEEATLTGDFSSYFRSNVFTVLESVRIERSNLSGVTSFARAFEGDSESESPLEKVIIRDNYYPETPSLTNISRMFTLCRKLSELDVSGLNTSSVTKMDTIFSNANSLKELDVSHFDTSSVTDMSSMFAACNSLEELDVSNFDTSSVTNMKYMLSGLHLKKLDVSNFDTSSVTNMYGMFAYCYNLEELDVSNFDTSSVNNMLHMFYVCNNLEELDLSNFDTSSVTNMFAMFAYCTSLKEIDVSNFDTSSVTTMSAMFFECSSLEALDLSNFDTSSVTTMASMFENSTALKSLYLDNFTDAASMTDMFKGTTSLTYLFVSHNLSTFNRLENTSWYDEKNWVQFSNLSQLQTYHRKQSEPTGYRKGAFLSLTMDAMGGEFEDAEEQKVQNKVSGEYWEEIVPVKEDYYFDGWYLDQNFTNKFDFSLPAAVSTTIYAKWVENYTVIIPASISLNEATELKVEGINRGSKALSVGLNRLATSVSESNELTLANTADTTVQCSAPLSWDGSENNPEKAILTLAPGSEITEGDAVMAIEAPENIQAGKYTGNLVFSINYE
>NC_021838.1|WP_023553878.1|2231045_2232584_-|helix-turn-helix-domain-containing-protein
MREYLDSKSQKKVALLEKIFYAENHTSTQEELLNDLNITYPTLISTIKTINFDIERFGYKAFSIVHSAPNLSYTLKISDNCSIQLIINAYIRESPKFQILETLLLSSFPNLQALAKKVHVSYSGIKKEIKELNEELRERNLYISTGNQVEITGDEFSLRIFYAFLFLVAYSGDRWPFSFVRYDEITDLLESCPKEIYRANSIDKAMMIHYYVAMHLLRDRMNCQIDTTRQFKVALYKACTEESKKSESAFIKKVAKQVPNRSYKEMTYTTQIILSTIVAFGSYSSIEKMPSFFYMDEQLEEMGFMKLVDFASEQVNDNLSIPFSEKEMELLRYSFASINYRYFLLDNLINKFNNIVPGYTDLDRNIRKIHKVNHLEPLISQLVNLKEMDPLKPFEERLTSDYLIILDKRIDFSIHTLPIKVTILSTISNETAVFDFMRYFSSYYNLEIINQVDPVVDLYISDFSVSPEVLTSLRINQPIIYVNTRWLESDYVKINDNLAKIARKKFIANKKN
>NC_021838.1|WP_003731687.1|2233219_2234770_-|hydantoinase/oxoprolinase-family-protein
MYKIGIDVGGTNTDAVILDENQQLIHSVKMPTSEDIETGITESLHRVLSETGIDRSKVTHAMLGTTQCTNAIVERKKLAKVGVLRLGYPATASVLPYTAWPEDMVGFLSGKYKLTGGGYEYDGQVLSEINEAEIRETLASWKGEVESVAVVGVFSSLKNDQELAVQKIIEEELGADIPVSISSSVGSVGLIERENATILNAALFKVIAATSDGFEKALEQEGIAHAEIYLCQNDGTLMSLNYARQFPILTIACGPTNSIRGASYLAGLKDAMVLDVGGTTSDIGVLTDGFPRESSLAVDVGGVRTNFRMPDIISIGLGGGSIVREKDGDITIGPDSVGYRISEEALVFGGKTMTTTDIAVRLGRAEIGNPELVAYIPTDFAEKAYKKIAEMTEDAIDKMKTSSGSVSLVLVGGGSVIIPDEISGVAQIFRDKNGPVANAIGASISQISGQYEQIYIYSQIEREEALQDAEQKAREQATLAGAVTDSIEVVEVEEIPLAYHPGNATRLRVKVVGNLV
>NC_021838.1|WP_003728093.1|2234762_2235863_-|DUF917-domain-containing-protein
MRYLDEQAIENIAIGAAFLGTGGGGDPYIGKMMALTAIKKHGPIKLLSPEEIADDDYFIPAAMMGAPSVLIEKFPKGDEFVRVFEKLGRYVGKEVKGTFPMEAGGVNSMIPIVVAAQLGLPMVDCDGMGRAFPELQMVTFHLDGISATPMAITDEKGNIGIMETIDNKWTERLARVTTVEMGASSLVSLYPCNGAQIKQSSIKNIVTLSEEIGKVIRETSMDEAEKLQKLLDVTHGYHLFEGKITDVVRETRAGFNFGRVKIDGLNKDTGSEVIVHFQNENLVAEKNGEPIAITPDLICMVDLETLMPVTTEALKYGKRVRVMALPADDAWRTDKGIETVGPRYFGYDVDFEPLEELVKKEERRHV
>NC_021838.1|WP_003728992.1|2235863_2237147_-|cytosine-permease
MTEKKSVEQTQSWQSLAFVWTGAMICVPSLLVGGTLISGMPLWEAILIALLGYGVIVLFMIYQGMQSSDLGIPAVSVASQVFGEQGSKKIISILLAIACLGWFGIQANVCGAAFSQFLGIYGINLPVPVSSLIWGVIMLLSAIYGIRILSILNYIAVPVLLFVCIYGLVVSLNDGGLAIVENYKPAGSMSFMTGLAITIGSFALGAVIAGDYSQYTKSRKDVVKAAIVGILPSGVLMITVGAVLALTAGTADISVVFTNLGLPVLGIIGLILAAWTTNAVNAFSGGIAIINVFNISEKYHKVAVAVAGGLGTILAVIGILNHFVPIMSVLSAMVPPVAGVMIASYWIVQKGDKSKWAPVSGVNWLGVSSWLVGAVIAGIPVILTFFPELPQLPNQPLIGIILSLAVYLIGAKVLSGKTNNVENLEGK
>NC_021838.1|WP_003740428.1|2237280_2238876_-|PucR-family-transcriptional-regulator
MSVKLADLMKLPSLKEAKVVSGKSGLSKLVSSISVLEYTEVALLEDDLFDNDEFYGSEIVVSAFVNIRDDVEAQCRTIERLHKVGEVALILYYVGIFVPKMDQKLIDFANELDFTIIVMPENEMSLRYSEVIYEVVEAIVKQEMTDTNFVTESLEQISSVRPPQRNIDTTLKILSDRTHTSLVLTDNSFQVINSITWPRTRHWDFERIIEASKQIGEHELVQLTLDERDFYTARKPIFQDGMQAMHLFMMKEKGVLTADVVMQITEVVQVFMNLWGRNYVEISTAELMKAILNDESVKMRRLGKILNVDVSSIKWMWLVKTEEIRDNEQVLAELKSFVASHFQVSLIDLFEDNIVVLLDNSVAQRDRTHTANEFAMMMKEHGIDLKITVCQGMEQTSDVQSAYSLVNEYKNAANAIYANKSIYSLQEIDFAAKCVEIVDRGELAIAEQMRPLKPLEDNDELIETLSVFLLEGESNYNQAAELLFLHKNTIKYRIQRINELLQYPATKIPESYNLYLAVAIRRILGGNNNNK
>NC_021838.1|WP_003721242.1|2239031_2239979_+|MoxR-family-ATPase
MSIEPSIKIEEIINEVEKVIVGKRHVVKLSLTALLAGGHVLLEDVPGVGKTMMVRTLSKTIGVSFKRIQFTPDLLPADVTGVSIFNPETRDFEFRPGPVMGNIVLADEINRTAPRTQAALLEGMAENSVTVDGITRKLANPFFVMATQNPIEYEGTYALPEAQLDRFLLKINIGYPTVEEEMQLLTLKQYQDPLDQTQQVVTLSELLDLKNKAKQVFIDDVLKNYIIRLVDATRKHPSVALGISPRGSLAFMQAAQAFALIEGRDYVIPDDIQYLAPYIFTHRLILKSEAYYNEETAESIIASILKNTSVPVEKR
>NC_021838.1|WP_003731689.1|2239983_2241132_+|DUF58-domain-containing-protein
MLKKRLLLAFRWIIMLIIYAGLWTYTLFQGDTASWFLTYFFSFILLLLFLSSIYPLKAWKVNRRFVKNTYHDGDLIDMQVSFTRKSRYPVGYLLFQQKIPASFGNVSARQQVVYPLFKKHFTVTLAGFVGVRGIHSFPPVDVETSDAFGLLERSRQLSSEKSLTIYPTYFPDVLEKISEASPENERNAAYWTLKKNSNLHSLREFSSGDRISLIDWKSSAKSDQLMTREFENSATSRLSVIFYGASHPNFELSLRAAYSFIRKISEDNGEIRVTLLGDQTSKFAPAKGTSKLQDISTAFAEIAPVDNLTLQESLDSNLHSGEKILLFTPCIDTMLMQKVTRLTDNKQLQIITFQSEHSKAMDAPAIFLEPASLLSRWEREAK
>NC_021838.1|WP_003731690.1|2241128_2243288_+|transglutaminase
MKRYLTLVMLFILSVLLISEWIYPFAELTELSKANWIILFITLSLGSFFLRLKYYWTIPLHIVMIIFVSGIYYAKGGILAGNWFVSFFQITFNGFRDMVQFRSSDISMDFILIVFLIALWLLSYITTYSILRKQRVMSVLVLTVAYLAVINTFTDYNSNWAIVRTVLEGFLLLHLALASRIAAPNRISADSLKRNGLFYHIFVILLLAVFVFSSLMLPKKAPIFPDPVPTIKNALGINTTRTVGYSEDDTTLGGALKKDNATVFTARAEKGHYWRVESKTVYTGTGWANANSADVISFSSGDNFPIQLTEQTTGATNTAEISFASSNDYMPYPYGTQTVNGAVDSFSANLTIERVGPVDTIKNYTVQLKTPVYNIEKMQNADFSTLSNAFVSQYTQTPKDLPDRVTKLANKVTKDADSIYDKTKAIERYLSASGTFTYSTEDAKETPRGADYVDQFLFETQIGYCDNFSTSMVVMLRSLGIPARWAKGYTPGEGEKKENDAKTTYTITNNNAHSWPEVFFPGTGWVPFEPTATFSNPENFQEPTTETANKPETPNDSTSTPETPNTADKTPEQDNGSSSTGETPKKEEPKTETAASNFEIPSWVWWIPAGLVVTLLALAIIFRRRIRRYLLLRSLRNSPEFGKTYHRLMKLLASYGYVRESSETLRHFSTRVDAELTTTEFSRLTKMYEAQIYSNNLTEKVITAEETQLVQQVIARLTK
>NC_021838.1|WP_003725185.1|2243404_2244160_+|DUF4866-domain-containing-protein
MTTIFPKEQNVAPLFEQILANPTACRRFKDVFLDNLESYQETRGFEKDDTLFAKIILSAYRQSDVSALLLGVCGRTLFELLRQAFLIPKKLTVDNPFFLTDKEGNFIAKKDDISNREQEKFQEIYQSDLHHSETTIFLVDDDDIVHSYEPDFSISTKRINKKRGILVLYSLPDTLKLGMTESEVYAFIWKTFLHIQEIIPSSRIFYGQETSENADELGVFLPIHHFEKKMLQNIEQVNELVDALREQMVNK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_021838_1	1.3\|336074\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	336074-336103	30	NC_021838.1	1449078-1449107	0	1.0
NC_021838_1	1.12\|336669\|30\|NC_021838\|CRISPRCasFinder,CRT	336669-336698	30	NC_021838.1	10815-10844	0	1.0
NC_021838_1	1.12\|336669\|30\|NC_021838\|CRISPRCasFinder,CRT	336669-336698	30	NC_021838.1	317796-317825	0	1.0
NC_021838_1	1.13\|336735\|30\|NC_021838\|CRISPRCasFinder,CRT	336735-336764	30	NC_021838.1	297582-297611	0	1.0
NC_021838_3	3.19\|2173833\|36\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	2173833-2173868	36	NC_021838.1	291638-291673	0	1.0
NC_021838_3	3.19\|2173833\|36\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	2173833-2173868	36	NC_021838.1	3020028-3020063	0	1.0
NC_021838_1	1.32\|337990\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337990-338019	30	NC_021838.1	12870-12899	1	0.967

1. spacer 1.3|336074|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to position: 1449078-1449107, mismatch: 0, identity: 1.0

gaatggatttattacggtcattttgcccaa	CRISPR spacer
gaatggatttattacggtcattttgcccaa	Protospacer
******************************

2. spacer 1.12|336669|30|NC_021838|CRISPRCasFinder,CRT matches to position: 10815-10844, mismatch: 0, identity: 1.0

tgttactgcttcgccgatgcttgttttacc	CRISPR spacer
tgttactgcttcgccgatgcttgttttacc	Protospacer
******************************

3. spacer 1.12|336669|30|NC_021838|CRISPRCasFinder,CRT matches to position: 317796-317825, mismatch: 0, identity: 1.0

tgttactgcttcgccgatgcttgttttacc	CRISPR spacer
tgttactgcttcgccgatgcttgttttacc	Protospacer
******************************

4. spacer 1.13|336735|30|NC_021838|CRISPRCasFinder,CRT matches to position: 297582-297611, mismatch: 0, identity: 1.0

ccaaaggagctaatttactccctaaaccta	CRISPR spacer
ccaaaggagctaatttactccctaaaccta	Protospacer
******************************

5. spacer 3.19|2173833|36|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to position: 291638-291673, mismatch: 0, identity: 1.0

aatatttaactcaataacccttgcttgtactgtaat	CRISPR spacer
aatatttaactcaataacccttgcttgtactgtaat	Protospacer
************************************

6. spacer 3.19|2173833|36|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to position: 3020028-3020063, mismatch: 0, identity: 1.0

aatatttaactcaataacccttgcttgtactgtaat	CRISPR spacer
aatatttaactcaataacccttgcttgtactgtaat	Protospacer
************************************

7. spacer 1.32|337990|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to position: 12870-12899, mismatch: 1, identity: 0.967

ttgctaattctttagcagtatctaaagtta	CRISPR spacer
ttgctaattctttagcagtgtctaaagtta	Protospacer
*******************.**********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_021838_1	1.3\|336074\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	336074-336103	30	KJ094023	Listeria phage LP-101, complete genome	13151-13180	0	1.0
NC_021838_1	1.13\|336735\|30\|NC_021838\|CRISPRCasFinder,CRT	336735-336764	30	MH341451	Listeria phage PSU-VKH-LP019, complete genome	10709-10738	0	1.0
NC_021838_1	1.13\|336735\|30\|NC_021838\|CRISPRCasFinder,CRT	336735-336764	30	DQ003642	Listeria phage A006, complete genome	10725-10754	0	1.0
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	MN172529	Listeria phage LP-039, complete genome	132759-132788	0	1.0
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	MT438761	Listeria virus P61, complete genome	10099-10128	0	1.0
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	MT668624	Listeria phage LP-Mix_6.2, complete genome	135301-135330	0	1.0
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	KJ591604	Listeria phage LMTA-148, complete genome	8664-8693	0	1.0
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	KJ094033	Listeria phage LP-048, complete genome	2187-2216	0	1.0
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	NC_041862	Listeria phage LP-064, complete genome	8109-8138	0	1.0
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	JX126918	Listeria phage LP-125, complete genome	8109-8138	0	1.0
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	132782-132811	0	1.0
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	KJ535721	Listeria phage List-36, complete genome	130430-130459	0	1.0
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	MT438761	Listeria virus P61, complete genome	11622-11651	0	1.0
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NC_047872	Listeria phage LMTA-94, complete genome	132605-132634	0	1.0
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	DQ003638	Listeria phage A511, complete genome	1407-1436	0	1.0
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	DQ003638	Listeria phage A511, complete genome	135901-135930	0	1.0
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	KJ591604	Listeria phage LMTA-148, complete genome	9938-9967	0	1.0
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	KJ591605	Listeria phage LMTA-57, complete genome	6420-6449	0	1.0
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	MN128594	Listeria phage LP-066, complete genome	1223-1252	0	1.0
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	MN128594	Listeria phage LP-066, complete genome	137013-137042	0	1.0
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NC_042048	Listeria phage LMTA-34, complete genome	15008-15037	0	1.0
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NC_041862	Listeria phage LP-064, complete genome	9612-9641	0	1.0
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	KJ094030	Listeria phage LP-083-2, complete genome	6404-6433	0	1.0
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	JX126918	Listeria phage LP-125, complete genome	9612-9641	0	1.0
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NC_024360	Listeria phage LMSP-25, complete genome	15008-15037	0	1.0
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	KJ535721	Listeria phage List-36, complete genome	128990-129019	0	1.0
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	KJ094031	Listeria phage LP-124, complete genome	104289-104318	0	1.0
NC_021838_1	1.23\|337395\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337395-337424	30	MH341452	Listeria phage PSU-VKH-LP040, complete genome	8193-8222	0	1.0
NC_021838_1	1.23\|337395\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337395-337424	30	KJ094022	Listeria phage LP-030-3, complete genome	16573-16602	0	1.0
NC_021838_1	1.23\|337395\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337395-337424	30	KP399678	Listeria phage vB_LmoS_293, complete genome	8180-8209	0	1.0
NC_021838_1	1.30\|337858\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337858-337887	30	MH341453	Listeria phage PSU-VKH-LP041, complete genome	12781-12810	0	1.0
NC_021838_1	1.30\|337858\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337858-337887	30	NC_009813	Listeria phage B054, complete genome	12781-12810	0	1.0
NC_021838_1	1.31\|337924\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337924-337953	30	DQ003637	Listeria phage A500, complete genome	37232-37261	0	1.0
NC_021838_1	1.31\|337924\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337924-337953	30	KJ094022	Listeria phage LP-030-3, complete genome	6787-6816	0	1.0
NC_021838_1	1.32\|337990\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337990-338019	30	DQ003637	Listeria phage A500, complete genome	28012-28041	0	1.0
NC_021838_1	1.34\|338122\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338122-338151	30	DQ003638	Listeria phage A511, complete genome	129539-129568	0	1.0
NC_021838_1	1.35\|338188\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338188-338217	30	NC_047872	Listeria phage LMTA-94, complete genome	2498-2527	0	1.0
NC_021838_1	1.35\|338188\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338188-338217	30	KJ591605	Listeria phage LMTA-57, complete genome	12879-12908	0	1.0
NC_021838_1	1.35\|338188\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338188-338217	30	MK792752	UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome	6613-6642	0	1.0
NC_021838_1	1.35\|338188\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338188-338217	30	MT438761	Listeria virus P61, complete genome	7010-7039	0	1.0
NC_021838_1	1.35\|338188\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338188-338217	30	MT668624	Listeria phage LP-Mix_6.2, complete genome	131100-131129	0	1.0
NC_021838_1	1.35\|338188\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338188-338217	30	KJ668718	Listeria phage LMTA-34 hypothetical proteins and DNA modification protein genes, complete cds	1258-1287	0	1.0
NC_021838_1	1.35\|338188\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338188-338217	30	MT178766	Listeria virus P100plus, complete genome	96120-96149	0	1.0
NC_021838_1	1.35\|338188\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338188-338217	30	MT178767	Listeria virus P200, complete genome	96121-96150	0	1.0
NC_021838_1	1.35\|338188\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338188-338217	30	MN128594	Listeria phage LP-066, complete genome	131590-131619	0	1.0
NC_021838_1	1.35\|338188\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338188-338217	30	NC_042048	Listeria phage LMTA-34, complete genome	8562-8591	0	1.0
NC_021838_1	1.35\|338188\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338188-338217	30	NC_041862	Listeria phage LP-064, complete genome	3914-3943	0	1.0
NC_021838_1	1.35\|338188\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338188-338217	30	KJ094030	Listeria phage LP-083-2, complete genome	981-1010	0	1.0
NC_021838_1	1.35\|338188\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338188-338217	30	JX126918	Listeria phage LP-125, complete genome	3914-3943	0	1.0
NC_021838_1	1.35\|338188\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338188-338217	30	NC_024360	Listeria phage LMSP-25, complete genome	8562-8591	0	1.0
NC_021838_1	1.35\|338188\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338188-338217	30	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	129717-129746	0	1.0
NC_021838_1	1.35\|338188\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338188-338217	30	KJ094031	Listeria phage LP-124, complete genome	98866-98895	0	1.0
NC_021838_1	1.39\|338452\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338452-338481	30	MH299806	Listeria phage LP-KV022, complete genome	52817-52846	0	1.0
NC_021838_1	1.39\|338452\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338452-338481	30	MN114083	Listeria phage LP-013, complete genome	48513-48542	0	1.0
NC_021838_1	1.39\|338452\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338452-338481	30	NC_021785	Listeria phage LP-110, complete genome	10535-10564	0	1.0
NC_021838_1	1.39\|338452\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338452-338481	30	MN128593	Listeria phage LP-031, complete genome	47633-47662	0	1.0
NC_021838_1	1.39\|338452\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338452-338481	30	NC_021787	Listeria phage LP-037, complete genome	5014-5043	0	1.0
NC_021838_1	1.39\|338452\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338452-338481	30	JX442241	Listeria phage P70, complete genome	54951-54980	0	1.0
NC_021838_1	1.39\|338452\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338452-338481	30	KJ094020	Listeria phage LP-026, complete genome	31166-31195	0	1.0
NC_021838_1	1.39\|338452\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338452-338481	30	KJ094021	Listeria phage LP-114, complete genome	38339-38368	0	1.0
NC_021838_1	1.39\|338452\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338452-338481	30	MN114082	Listeria phage LP-010, complete genome	47798-47827	0	1.0
NC_021838_1	1.39\|338452\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338452-338481	30	KJ094026	Listeria phage LP-032 contig 3, partial genome	10007-10036	0	1.0
NC_021838_3	3.5\|2172925\|34\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	2172925-2172958	34	NC_003216	Listeria phage A118, complete genome	19172-19205	0	1.0
NC_021838_3	3.5\|2172925\|34\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	2172925-2172958	34	AJ242593	Bacteriophage A118 complete genome	19172-19205	0	1.0
NC_021838_3	3.9\|2173180\|36\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	2173180-2173215	36	NC_003216	Listeria phage A118, complete genome	18563-18598	0	1.0
NC_021838_3	3.9\|2173180\|36\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	2173180-2173215	36	AJ242593	Bacteriophage A118 complete genome	18563-18598	0	1.0
NC_021838_3	3.14\|2173505\|36\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	2173505-2173540	36	KJ094023	Listeria phage LP-101, complete genome	18341-18376	0	1.0
NC_021838_3	3.18\|2173769\|35\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	2173769-2173803	35	MH341453	Listeria phage PSU-VKH-LP041, complete genome	31167-31201	0	1.0
NC_021838_3	3.19\|2173833\|36\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	2173833-2173868	36	DQ003642	Listeria phage A006, complete genome	16672-16707	0	1.0
NC_021838_1	1.3\|336074\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	336074-336103	30	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	222678-222707	1	0.967
NC_021838_1	1.11\|336603\|30\|NC_021838\|CRISPRCasFinder,CRT	336603-336632	30	MT668624	Listeria phage LP-Mix_6.2, complete genome	132068-132097	1	0.967
NC_021838_1	1.11\|336603\|30\|NC_021838\|CRISPRCasFinder,CRT	336603-336632	30	MT178766	Listeria virus P100plus, complete genome	97088-97117	1	0.967
NC_021838_1	1.11\|336603\|30\|NC_021838\|CRISPRCasFinder,CRT	336603-336632	30	NC_025440	Listeria phage WIL-1, complete genome	37279-37308	1	0.967
NC_021838_1	1.11\|336603\|30\|NC_021838\|CRISPRCasFinder,CRT	336603-336632	30	NC_047872	Listeria phage LMTA-94, complete genome	1530-1559	1	0.967
NC_021838_1	1.11\|336603\|30\|NC_021838\|CRISPRCasFinder,CRT	336603-336632	30	DQ003638	Listeria phage A511, complete genome	129989-130018	1	0.967
NC_021838_1	1.11\|336603\|30\|NC_021838\|CRISPRCasFinder,CRT	336603-336632	30	MT178767	Listeria virus P200, complete genome	97089-97118	1	0.967
NC_021838_1	1.11\|336603\|30\|NC_021838\|CRISPRCasFinder,CRT	336603-336632	30	KJ591605	Listeria phage LMTA-57, complete genome	11911-11940	1	0.967
NC_021838_1	1.11\|336603\|30\|NC_021838\|CRISPRCasFinder,CRT	336603-336632	30	MN128594	Listeria phage LP-066, complete genome	132558-132587	1	0.967
NC_021838_1	1.11\|336603\|30\|NC_021838\|CRISPRCasFinder,CRT	336603-336632	30	NC_042048	Listeria phage LMTA-34, complete genome	9530-9559	1	0.967
NC_021838_1	1.11\|336603\|30\|NC_021838\|CRISPRCasFinder,CRT	336603-336632	30	MK792752	UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome	5645-5674	1	0.967
NC_021838_1	1.11\|336603\|30\|NC_021838\|CRISPRCasFinder,CRT	336603-336632	30	NC_041862	Listeria phage LP-064, complete genome	4882-4911	1	0.967
NC_021838_1	1.11\|336603\|30\|NC_021838\|CRISPRCasFinder,CRT	336603-336632	30	KJ094030	Listeria phage LP-083-2, complete genome	1949-1978	1	0.967
NC_021838_1	1.11\|336603\|30\|NC_021838\|CRISPRCasFinder,CRT	336603-336632	30	JX126918	Listeria phage LP-125, complete genome	4882-4911	1	0.967
NC_021838_1	1.11\|336603\|30\|NC_021838\|CRISPRCasFinder,CRT	336603-336632	30	NC_024360	Listeria phage LMSP-25, complete genome	9530-9559	1	0.967
NC_021838_1	1.11\|336603\|30\|NC_021838\|CRISPRCasFinder,CRT	336603-336632	30	KJ094031	Listeria phage LP-124, complete genome	99834-99863	1	0.967
NC_021838_1	1.12\|336669\|30\|NC_021838\|CRISPRCasFinder,CRT	336669-336698	30	MH341451	Listeria phage PSU-VKH-LP019, complete genome	28776-28805	1	0.967
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	NC_047872	Listeria phage LMTA-94, complete genome	133951-133980	1	0.967
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	MK792752	UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome	2670-2699	1	0.967
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	MT178766	Listeria virus P100plus, complete genome	101688-101717	1	0.967
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NC_025440	Listeria phage WIL-1, complete genome	31699-31728	1	0.967
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	MT178767	Listeria virus P200, complete genome	101689-101718	1	0.967
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	DQ004855	Listeria bacteriophage P100, complete genome	98043-98072	1	0.967
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	1229-1258	1	0.967
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	KT319598	UNVERIFIED: Listeria phage WIL-2 genomic sequence	31421-31450	1	0.967
NC_021838_1	1.17\|336999\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	336999-337028	30	KJ094023	Listeria phage LP-101, complete genome	43273-43302	1	0.967
NC_021838_1	1.23\|337395\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337395-337424	30	NC_003216	Listeria phage A118, complete genome	8179-8208	1	0.967
NC_021838_1	1.23\|337395\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337395-337424	30	AJ242593	Bacteriophage A118 complete genome	8179-8208	1	0.967
NC_021838_1	1.31\|337924\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337924-337953	30	NC_003216	Listeria phage A118, complete genome	39285-39314	1	0.967
NC_021838_1	1.31\|337924\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337924-337953	30	AJ242593	Bacteriophage A118 complete genome	39285-39314	1	0.967
NC_021838_1	1.31\|337924\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337924-337953	30	DQ003642	Listeria phage A006, complete genome	36580-36609	1	0.967
NC_021838_1	1.32\|337990\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337990-338019	30	MH341452	Listeria phage PSU-VKH-LP040, complete genome	28407-28436	1	0.967
NC_021838_1	1.32\|337990\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337990-338019	30	KJ094022	Listeria phage LP-030-3, complete genome	37396-37425	1	0.967
NC_021838_1	1.35\|338188\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338188-338217	30	NC_025440	Listeria phage WIL-1, complete genome	38247-38276	1	0.967
NC_021838_1	1.35\|338188\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338188-338217	30	MN172529	Listeria phage LP-039, complete genome	129892-129921	1	0.967
NC_021838_1	1.35\|338188\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338188-338217	30	DQ003638	Listeria phage A511, complete genome	129021-129050	1	0.967
NC_021838_1	1.35\|338188\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338188-338217	30	KJ591604	Listeria phage LMTA-148, complete genome	6287-6316	1	0.967
NC_021838_1	1.35\|338188\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338188-338217	30	KJ094033	Listeria phage LP-048, complete genome	132349-132378	1	0.967
NC_021838_3	3.15\|2173570\|36\|NC_021838\|CRISPRCasFinder,CRT	2173570-2173605	36	KJ094023	Listeria phage LP-101, complete genome	17910-17945	1	0.972
NC_021838_3	3.20\|2173898\|37\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	2173898-2173934	37	KJ094023	Listeria phage LP-101, complete genome	9186-9222	1	0.973
NC_021838_1	1.11\|336603\|30\|NC_021838\|CRISPRCasFinder,CRT	336603-336632	30	KJ668718	Listeria phage LMTA-34 hypothetical proteins and DNA modification protein genes, complete cds	2226-2255	2	0.933
NC_021838_1	1.11\|336603\|30\|NC_021838\|CRISPRCasFinder,CRT	336603-336632	30	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	130258-130287	2	0.933
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	NC_042048	Listeria phage LMTA-34, complete genome	13576-13605	2	0.933
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	NC_024360	Listeria phage LMSP-25, complete genome	13576-13605	2	0.933
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	KJ591605	Listeria phage LMTA-57, complete genome	7852-7881	2	0.933
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	MN172529	Listeria phage LP-039, complete genome	998-1027	2	0.933
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	MN172529	Listeria phage LP-039, complete genome	134024-134053	2	0.933
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	MT668624	Listeria phage LP-Mix_6.2, complete genome	998-1027	2	0.933
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	MT668624	Listeria phage LP-Mix_6.2, complete genome	136566-136595	2	0.933
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	KJ094033	Listeria phage LP-048, complete genome	3452-3481	2	0.933
NC_021838_1	1.22\|337329\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337329-337358	30	MN114083	Listeria phage LP-013, complete genome	48006-48035	2	0.933
NC_021838_1	1.22\|337329\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337329-337358	30	MN114082	Listeria phage LP-010, complete genome	47291-47320	2	0.933
NC_021838_1	1.24\|337461\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337461-337490	30	NC_003216	Listeria phage A118, complete genome	17880-17909	2	0.933
NC_021838_1	1.24\|337461\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337461-337490	30	AJ242593	Bacteriophage A118 complete genome	17880-17909	2	0.933
NC_021838_1	1.32\|337990\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337990-338019	30	KP399678	Listeria phage vB_LmoS_293, complete genome	29033-29062	2	0.933
NC_021838_1	1.34\|338122\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338122-338151	30	NC_025440	Listeria phage WIL-1, complete genome	37729-37758	2	0.933
NC_021838_1	1.34\|338122\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338122-338151	30	KJ591605	Listeria phage LMTA-57, complete genome	12361-12390	2	0.933
NC_021838_1	1.34\|338122\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338122-338151	30	KJ668718	Listeria phage LMTA-34 hypothetical proteins and DNA modification protein genes, complete cds	1776-1805	2	0.933
NC_021838_1	1.34\|338122\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338122-338151	30	MT178766	Listeria virus P100plus, complete genome	96638-96667	2	0.933
NC_021838_1	1.34\|338122\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338122-338151	30	MT178767	Listeria virus P200, complete genome	96639-96668	2	0.933
NC_021838_1	1.39\|338452\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338452-338481	30	MN904502	Listeria phage LP-018, complete genome	47792-47821	2	0.933
NC_021838_3	3.10\|2173245\|36\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	2173245-2173280	36	MH341453	Listeria phage PSU-VKH-LP041, complete genome	26132-26167	2	0.944
NC_021838_3	3.20\|2173898\|37\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	2173898-2173934	37	MT500540	Listeria phage LP-HM00113468, complete genome	35729-35765	2	0.946
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	KJ668716	Listeria phage LMTA-34 hypothetical protein genes, complete cds	4369-4398	3	0.9
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	DQ003638	Listeria phage A511, complete genome	134220-134249	3	0.9
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	MN128594	Listeria phage LP-066, complete genome	135510-135539	3	0.9
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	KJ094030	Listeria phage LP-083-2, complete genome	4901-4930	3	0.9
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	KJ094031	Listeria phage LP-124, complete genome	102786-102815	3	0.9
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	NC_025440	Listeria phage WIL-1, complete genome	33374-33403	3	0.9
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	KT319598	UNVERIFIED: Listeria phage WIL-2 genomic sequence	33096-33125	3	0.9
NC_021838_1	1.22\|337329\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337329-337358	30	MH299806	Listeria phage LP-KV022, complete genome	52479-52508	3	0.9
NC_021838_1	1.22\|337329\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337329-337358	30	JB137888	Sequence 7 from Patent WO2012159774	837-866	3	0.9
NC_021838_1	1.22\|337329\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337329-337358	30	NC_021785	Listeria phage LP-110, complete genome	10197-10226	3	0.9
NC_021838_1	1.32\|337990\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337990-338019	30	KP399677	Listeria phage vB_LmoS_188, complete genome	27664-27693	3	0.9
NC_021838_1	1.34\|338122\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338122-338151	30	MK792752	UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome	6095-6124	3	0.9
NC_021838_1	1.34\|338122\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338122-338151	30	NC_047872	Listeria phage LMTA-94, complete genome	1980-2009	3	0.9
NC_021838_1	1.34\|338122\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338122-338151	30	NC_042048	Listeria phage LMTA-34, complete genome	9080-9109	3	0.9
NC_021838_1	1.34\|338122\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338122-338151	30	NC_024360	Listeria phage LMSP-25, complete genome	9080-9109	3	0.9
NC_021838_1	1.39\|338452\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338452-338481	30	JB137888	Sequence 7 from Patent WO2012159774	340-369	3	0.9
NC_021838_3	3.4\|2172860\|36\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	2172860-2172895	36	MH341453	Listeria phage PSU-VKH-LP041, complete genome	41996-42031	3	0.917
NC_021838_1	1.32\|337990\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337990-338019	30	NC_020157	Anabaena cylindrica PCC 7122 plasmid pANACY.02, complete sequence	170220-170249	4	0.867
NC_021838_1	1.34\|338122\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338122-338151	30	MT668624	Listeria phage LP-Mix_6.2, complete genome	131618-131647	4	0.867
NC_021838_1	1.34\|338122\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338122-338151	30	MN128594	Listeria phage LP-066, complete genome	132108-132137	4	0.867
NC_021838_1	1.34\|338122\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338122-338151	30	NC_041862	Listeria phage LP-064, complete genome	4432-4461	4	0.867
NC_021838_1	1.34\|338122\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338122-338151	30	KJ094030	Listeria phage LP-083-2, complete genome	1499-1528	4	0.867
NC_021838_1	1.34\|338122\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338122-338151	30	JX126918	Listeria phage LP-125, complete genome	4432-4461	4	0.867
NC_021838_1	1.34\|338122\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338122-338151	30	KJ094031	Listeria phage LP-124, complete genome	99384-99413	4	0.867
NC_021838_3	3.2\|2172729\|36\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	2172729-2172764	36	FW590615	JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME	3844-3879	4	0.889
NC_021838_3	3.2\|2172729\|36\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	2172729-2172764	36	HI504184	Sequence 26 from Patent EP2147092	3844-3879	4	0.889
NC_021838_3	3.2\|2172729\|36\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	2172729-2172764	36	AJ417489	bacteriophage U153 int gene for U153 integrase	3844-3879	4	0.889
NC_021838_3	3.15\|2173570\|36\|NC_021838\|CRISPRCasFinder,CRT	2173570-2173605	36	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	227438-227473	4	0.889
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NC_013373	Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence	38151-38180	5	0.833
NC_021838_1	1.22\|337329\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337329-337358	30	KJ094026	Listeria phage LP-032 contig 3, partial genome	10345-10374	5	0.833
NC_021838_1	1.22\|337329\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337329-337358	30	MN128593	Listeria phage LP-031, complete genome	47295-47324	5	0.833
NC_021838_1	1.22\|337329\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337329-337358	30	NC_021787	Listeria phage LP-037, complete genome	4676-4705	5	0.833
NC_021838_1	1.22\|337329\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337329-337358	30	MN904502	Listeria phage LP-018, complete genome	47454-47483	5	0.833
NC_021838_1	1.22\|337329\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337329-337358	30	JX442241	Listeria phage P70, complete genome	54613-54642	5	0.833
NC_021838_1	1.22\|337329\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337329-337358	30	KJ094020	Listeria phage LP-026, complete genome	30828-30857	5	0.833
NC_021838_1	1.22\|337329\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337329-337358	30	KJ094021	Listeria phage LP-114, complete genome	38019-38048	5	0.833
NC_021838_3	3.4\|2172860\|36\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	2172860-2172895	36	KJ094023	Listeria phage LP-101, complete genome	32760-32795	5	0.861
NC_021838_1	1.11\|336603\|30\|NC_021838\|CRISPRCasFinder,CRT	336603-336632	30	NZ_AP014867	Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK3, complete sequence	63187-63216	6	0.8
NC_021838_1	1.11\|336603\|30\|NC_021838\|CRISPRCasFinder,CRT	336603-336632	30	NC_011730	Gloeothece citriformis PCC 7424 plasmid pP742403, complete sequence	25037-25066	6	0.8
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP031989	Acinetobacter haemolyticus strain 5227 plasmid pAhaem5227b, complete sequence	7271-7300	6	0.8
NC_021838_1	1.19\|337131\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337131-337160	30	NZ_CP021170	Paenibacillus bovis strain BD3526 plasmid unnamed1, complete sequence	32901-32930	6	0.8
NC_021838_1	1.24\|337461\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337461-337490	30	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	1490341-1490370	6	0.8
NC_021838_1	1.26\|337593\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337593-337622	30	NZ_CP014203	Clostridium baratii strain CDC51267 plasmid pNPD11_1, complete sequence	84179-84208	6	0.8
NC_021838_1	1.26\|337593\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337593-337622	30	NC_004574	Ruegeria sp. PR1b plasmid pSD25, complete sequence	34184-34213	6	0.8
NC_021838_1	1.32\|337990\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337990-338019	30	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	347991-348020	6	0.8
NC_021838_3	3.1\|2172665\|35\|NC_021838\|CRISPRCasFinder,CRT	2172665-2172699	35	MN694189	Marine virus AFVG_250M578, complete genome	47879-47913	6	0.829
NC_021838_3	3.7\|2173054\|34\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	2173054-2173087	34	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	1764851-1764884	6	0.824
NC_021838_1	1.11\|336603\|30\|NC_021838\|CRISPRCasFinder,CRT	336603-336632	30	NC_021793	Cellulophaga phage phi48:2, complete genome	2953-2982	7	0.767
NC_021838_1	1.11\|336603\|30\|NC_021838\|CRISPRCasFinder,CRT	336603-336632	30	HQ683709	Planktothrix phage PaV-LD, complete genome	41599-41628	7	0.767
NC_021838_1	1.11\|336603\|30\|NC_021838\|CRISPRCasFinder,CRT	336603-336632	30	HQ683709	Planktothrix phage PaV-LD, complete genome	45663-45692	7	0.767
NC_021838_1	1.11\|336603\|30\|NC_021838\|CRISPRCasFinder,CRT	336603-336632	30	MF417937	Uncultured Caudovirales phage clone 10F_6, partial genome	16982-17011	7	0.767
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	NC_019388	Thermus oshimai JL-2 plasmid pTHEOS02, complete sequence	18295-18324	7	0.767
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	NZ_CP010824	Thermus aquaticus Y51MC23 plasmid pTA16, complete sequence	3497-3526	7	0.767
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NC_008226	Clostridioides difficile 630 plasmid pCD630, complete sequence	2090-2119	7	0.767
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP016319	Clostridioides difficile strain 630 delta erm plasmid pCD630, complete sequence	4992-5021	7	0.767
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_MG019959	Clostridioides difficile isolate ERR017368_NODE12 plasmid pCD-WTSI1, complete sequence	1498-1527	7	0.767
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_MG019961	Clostridioides difficile isolate ERR125910_NODE5 plasmid pCD-WTSI3, complete sequence	1502-1531	7	0.767
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_MG019962	Clostridioides difficile isolate ERR125911_NODE11 plasmid pCD-WTSI4, complete sequence	1498-1527	7	0.767
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_MG019960	Clostridioides difficile isolate ERR022513_NODE32 plasmid pCD-WTSI2, complete sequence	1498-1527	7	0.767
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_MG266000	Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence	2096-2125	7	0.767
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP017574	Bacillus thuringiensis strain SCG04-02 plasmid PSCG364, complete sequence	158655-158684	7	0.767
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP012100	Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence	369433-369462	7	0.767
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NC_008014	Lawsonia intracellularis PHE/MN1-00 plasmid 3, complete sequence	117071-117100	7	0.767
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NC_020130	Lawsonia intracellularis N343 plasmid 3, complete sequence	117093-117122	7	0.767
NC_021838_1	1.19\|337131\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337131-337160	30	NZ_CP049249	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence	948785-948814	7	0.767
NC_021838_1	1.20\|337197\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337197-337226	30	MN694303	Marine virus AFVG_250M806, complete genome	45836-45865	7	0.767
NC_021838_1	1.32\|337990\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337990-338019	30	NC_022774	Bacillus phage Slash, complete genome	76691-76720	7	0.767
NC_021838_1	1.32\|337990\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337990-338019	30	KT345706	Vibrio phage vB_VorS-PVo5, complete genome	58694-58723	7	0.767
NC_021838_1	1.32\|337990\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337990-338019	30	MN693549	Marine virus AFVG_25M89, complete genome	4908-4937	7	0.767
NC_021838_1	1.32\|337990\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337990-338019	30	AP014070	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C2-MedDCM-OCT-S42-C71, * SEQUENCING IN PROGRESS *	20151-20180	7	0.767
NC_021838_1	1.32\|337990\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337990-338019	30	AP014069	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C2-MedDCM-OCT-S40-C35, * SEQUENCING IN PROGRESS *	13878-13907	7	0.767
NC_021838_1	1.1\|335942\|30\|NC_021838\|CRISPRCasFinder,CRT	335942-335971	30	MN855765	Myoviridae sp. isolate 14, complete genome	24949-24978	8	0.733
NC_021838_1	1.6\|336273\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	336273-336302	30	MH791404	UNVERIFIED: Aeromonas phage Assk, partial genome	139787-139816	8	0.733
NC_021838_1	1.6\|336273\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	336273-336302	30	NC_019538	Aeromonas phage CC2, complete genome	139696-139725	8	0.733
NC_021838_1	1.8\|336405\|30\|NC_021838\|CRISPRCasFinder,CRT	336405-336434	30	NZ_CP019039	Bacillus velezensis strain GH1-13 plasmid unnamed, complete sequence	8876-8905	8	0.733
NC_021838_1	1.8\|336405\|30\|NC_021838\|CRISPRCasFinder,CRT	336405-336434	30	NZ_CP019234	Bacillus thuringiensis strain YGd22-03 plasmid pYGD83, complete sequence	12438-12467	8	0.733
NC_021838_1	1.9\|336471\|30\|NC_021838\|CRISPRCasFinder,CRT	336471-336500	30	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	1233492-1233521	8	0.733
NC_021838_1	1.10\|336537\|30\|NC_021838\|CRISPRCasFinder,CRT	336537-336566	30	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	1233492-1233521	8	0.733
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP017256	Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence	132795-132824	8	0.733
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP018746	Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed1	27747-27776	8	0.733
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP028865	Borreliella garinii strain 20047 plasmid lp36, complete sequence	9252-9281	8	0.733
NC_021838_1	1.16\|336933\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	336933-336962	30	NZ_CP009275	Klebsiella variicola strain DX120E plasmid pKV1, complete sequence	21888-21917	8	0.733
NC_021838_1	1.16\|336933\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	336933-336962	30	MT786458	Staphylococcus phage vB_SauH_SAP1, complete genome	114164-114193	8	0.733
NC_021838_1	1.20\|337197\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337197-337226	30	HM452126	Aeromonas phage phiAS5, complete genome	156053-156082	8	0.733
NC_021838_1	1.21\|337263\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337263-337292	30	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	35867-35896	8	0.733
NC_021838_1	1.28\|337725\|31\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337725-337755	31	NZ_CP047439	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-2, complete sequence	32089-32119	8	0.742
NC_021838_1	1.28\|337725\|31\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337725-337755	31	NZ_CP047440	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence	57249-57279	8	0.742
NC_021838_1	1.29\|337792\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337792-337821	30	NZ_CP025513	Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence	1092818-1092847	8	0.733
NC_021838_1	1.31\|337924\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337924-337953	30	AP017924	Ralstonia phage RP12 DNA, complete genome	83724-83753	8	0.733
NC_021838_1	1.31\|337924\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337924-337953	30	AP017925	Ralstonia phage RP31 DNA, complete genome	80469-80498	8	0.733
NC_021838_1	1.31\|337924\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337924-337953	30	AP014501	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S32-C4, * SEQUENCING IN PROGRESS *, 3 ordered pieces	19152-19181	8	0.733
NC_021838_1	1.32\|337990\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337990-338019	30	NZ_CP017574	Bacillus thuringiensis strain SCG04-02 plasmid PSCG364, complete sequence	345792-345821	8	0.733
NC_021838_1	1.32\|337990\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337990-338019	30	NZ_CP010111	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-5, complete sequence	158431-158460	8	0.733
NC_021838_1	1.32\|337990\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337990-338019	30	NZ_CP026415	Acinetobacter sp. ACNIH2 plasmid pACI-55cf, complete sequence	60676-60705	8	0.733
NC_021838_1	1.32\|337990\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337990-338019	30	MN694545	Marine virus AFVG_250M894, complete genome	12846-12875	8	0.733
NC_021838_1	1.32\|337990\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337990-338019	30	NZ_CP031992	Acinetobacter haemolyticus strain 2126ch plasmid pAhaem2126chf, complete sequence	52422-52451	8	0.733
NC_021838_1	1.32\|337990\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337990-338019	30	NZ_CP018872	Acinetobacter haemolyticus strain TJS01 plasmid pAHTJS1, complete sequence	51103-51132	8	0.733
NC_021838_1	1.32\|337990\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337990-338019	30	MH319731	Marine virus AG-345-E02 Ga0172268_11 genomic sequence	38422-38451	8	0.733
NC_021838_1	1.33\|338056\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338056-338085	30	MN035989	Leviviridae sp. isolate H3_Bulk_41_scaffold_462 RNA-dependent RNA polymerase (H3Bulk41462_000001), hypothetical protein (H3Bulk41462_000002), hypothetical protein (H3Bulk41462_000003), and hypothetical protein (H3Bulk41462_000004) genes, complete cds	382-411	8	0.733
NC_021838_1	1.36\|338254\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338254-338283	30	NC_012970	Methylovorus glucosetrophus SIP3-4 plasmid pMsip01, complete sequence	63330-63359	8	0.733
NC_021838_1	1.36\|338254\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338254-338283	30	MN552143	Lactococcus phage P1046, complete genome	19997-20026	8	0.733
NC_021838_1	1.36\|338254\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338254-338283	30	NC_010576	Lactococcus phage 1706, complete genome	21200-21229	8	0.733
NC_021838_1	1.36\|338254\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338254-338283	30	MK779875	Lactococcus phage CHPC971, complete genome	20962-20991	8	0.733
NC_021838_1	1.40\|338518\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	338518-338547	30	NZ_CP040765	Paracoccus sp. 2251 plasmid unnamed1, complete sequence	223230-223259	8	0.733
NC_021838_3	3.2\|2172729\|36\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	2172729-2172764	36	NC_019743	Microcoleus sp. PCC 7113 plasmid pMIC7113.08, complete sequence	4997-5032	8	0.778
NC_021838_1	1.3\|336074\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	336074-336103	30	NZ_LR136959	Alteromonas sp. 76-1 plasmid pAlt76, complete sequence	31734-31763	9	0.7
NC_021838_1	1.14\|336801\|30\|NC_021838\|CRISPRCasFinder,CRT	336801-336830	30	NZ_AP017376	Stanieria sp. NIES-3757 plasmid plasmid1 DNA, complete genome	67436-67465	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP039210	Piscirickettsia salmonis strain Psal-103 plasmid unnamed1, complete sequence	65715-65744	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP048067	Piscirickettsia salmonis strain Ps-8079A plasmid Ps8079A-p1, complete sequence	52445-52474	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP039033	Piscirickettsia salmonis strain Psal-070 plasmid unnamed1, complete sequence	68222-68251	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP038894	Piscirickettsia salmonis strain Psal-006a plasmid unnamed1, complete sequence	68982-69011	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP038924	Piscirickettsia salmonis strain Psal-011 plasmid unnamed1, complete sequence	103349-103378	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP038953	Piscirickettsia salmonis strain Psal-040 plasmid unnamed1, complete sequence	136654-136683	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP038958	Piscirickettsia salmonis strain Psal-041 plasmid unnamed1, complete sequence	90864-90893	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP039196	Piscirickettsia salmonis strain Psal-161 plasmid unnamed1, complete sequence	154015-154044	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP038812	Piscirickettsia salmonis strain Psal-001 plasmid unnamed1, complete sequence	83314-83343	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP013769	Piscirickettsia salmonis strain PM23019A plasmid p1PS3, complete sequence	48925-48954	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP033942	Piscirickettsia salmonis strain EM-90 plasmid pPSEM90-5, complete sequence	18798-18827	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP039228	Piscirickettsia salmonis strain SR1 plasmid unnamed1, complete sequence	112577-112606	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP013761	Piscirickettsia salmonis strain AY6492A plasmid p4PS1, complete sequence	50274-50303	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP013774	Piscirickettsia salmonis strain PM37984A plasmid p1PS4, complete sequence	125910-125939	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP013779	Piscirickettsia salmonis strain PM51819A plasmid p1PS5, complete sequence	8585-8614	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP050945	Piscirickettsia salmonis strain Ps-2192A plasmid Ps2192A-p7, complete sequence	171443-171472	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP038892	Piscirickettsia salmonis strain Psal-005 plasmid unnamed1, complete sequence	103636-103665	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP038914	Piscirickettsia salmonis strain Psal-010a plasmid unnamed1, complete sequence	68221-68250	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP038968	Piscirickettsia salmonis strain Psal-068 plasmid unnamed1, complete sequence	83316-83345	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP039202	Piscirickettsia salmonis strain Psal-163 plasmid unnamed1, complete sequence	99674-99703	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP039205	Piscirickettsia salmonis strain Psal-182 plasmid unnamed1, complete sequence	90282-90311	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP039235	Piscirickettsia salmonis strain BI1 plasmid unnamed1, complete sequence	50265-50294	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP039241	Piscirickettsia salmonis strain MR5 plasmid unnamed1, complete sequence	113202-113231	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP039042	Piscirickettsia salmonis strain Psal-072 plasmid unnamed2, complete sequence	68983-69012	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP039187	Piscirickettsia salmonis strain Psal-159 plasmid unnamed1, complete sequence	99678-99707	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP038948	Piscirickettsia salmonis strain Psal-028 plasmid unnamed1, complete sequence	130763-130792	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP038933	Piscirickettsia salmonis strain Psal-025 plasmid unnamed1, complete sequence	143191-143220	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP038973	Piscirickettsia salmonis strain Psal-069 plasmid unnamed1, complete sequence	103637-103666	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP039036	Piscirickettsia salmonis strain Psal-071 plasmid unnamed1, complete sequence	68983-69012	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP039066	Piscirickettsia salmonis strain Psal-107 plasmid unnamed1, complete sequence	99678-99707	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP038887	Piscirickettsia salmonis strain Psal-004 plasmid unnamed1, complete sequence	38330-38359	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP039215	Piscirickettsia salmonis strain Psal-104a plasmid unnamed1, complete sequence	83262-83291	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP038909	Piscirickettsia salmonis strain Psal-009 plasmid unnamed1, complete sequence	85913-85942	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP038938	Piscirickettsia salmonis strain Psal-026 plasmid unnamed1, complete sequence	57693-57722	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP038963	Piscirickettsia salmonis strain Psal-051 plasmid unnamed1, complete sequence	68983-69012	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP038877	Piscirickettsia salmonis strain Psal-002 plasmid unnamed1, complete sequence	83263-83292	9	0.7
NC_021838_1	1.15\|336867\|30\|NC_021838\|CRISPRCasFinder,CRT	336867-336896	30	NZ_CP038882	Piscirickettsia salmonis strain Psal-003 plasmid unnamed1, complete sequence	39289-39318	9	0.7
NC_021838_1	1.20\|337197\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337197-337226	30	MN393079	Salmonella virus VSiA, complete genome	26795-26824	9	0.7
NC_021838_1	1.20\|337197\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337197-337226	30	MH424444	Salmonella virus VSiP, complete genome	26915-26944	9	0.7
NC_021838_1	1.21\|337263\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	337263-337292	30	NZ_CP045296	Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence	142346-142375	9	0.7
NC_021838_3	3.1\|2172665\|35\|NC_021838\|CRISPRCasFinder,CRT	2172665-2172699	35	MK448625	Streptococcus satellite phage Javan738, complete genome	5960-5994	9	0.743
NC_021838_3	3.1\|2172665\|35\|NC_021838\|CRISPRCasFinder,CRT	2172665-2172699	35	MK448449	Streptococcus satellite phage Javan356, complete genome	4490-4524	9	0.743
NC_021838_3	3.1\|2172665\|35\|NC_021838\|CRISPRCasFinder,CRT	2172665-2172699	35	MK448636	Streptococcus satellite phage Javan749, complete genome	6112-6146	9	0.743
NC_021838_3	3.1\|2172665\|35\|NC_021838\|CRISPRCasFinder,CRT	2172665-2172699	35	NZ_CP045037	Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence	34734-34768	9	0.743
NC_021838_3	3.1\|2172665\|35\|NC_021838\|CRISPRCasFinder,CRT	2172665-2172699	35	NZ_CP018177	Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence	11325-11359	9	0.743
NC_021838_3	3.1\|2172665\|35\|NC_021838\|CRISPRCasFinder,CRT	2172665-2172699	35	NZ_CP018181	Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence	63608-63642	9	0.743
NC_021838_3	3.7\|2173054\|34\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	2173054-2173087	34	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	39302-39335	9	0.735
NC_021838_3	3.18\|2173769\|35\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	2173769-2173803	35	NZ_CP013615	Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence	176358-176392	9	0.743

1. spacer 1.3|336074|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

gaatggatttattacggtcattttgcccaa	CRISPR spacer
gaatggatttattacggtcattttgcccaa	Protospacer
******************************

2. spacer 1.13|336735|30|NC_021838|CRISPRCasFinder,CRT matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 0, identity: 1.0

ccaaaggagctaatttactccctaaaccta	CRISPR spacer
ccaaaggagctaatttactccctaaaccta	Protospacer
******************************

3. spacer 1.13|336735|30|NC_021838|CRISPRCasFinder,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 0, identity: 1.0

ccaaaggagctaatttactccctaaaccta	CRISPR spacer
ccaaaggagctaatttactccctaaaccta	Protospacer
******************************

4. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 0, identity: 1.0

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
ttgaggctagcggatatacttttgaatacg	Protospacer
******************************

5. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to MT438761 (Listeria virus P61, complete genome) position: , mismatch: 0, identity: 1.0

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
ttgaggctagcggatatacttttgaatacg	Protospacer
******************************

6. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to MT668624 (Listeria phage LP-Mix_6.2, complete genome) position: , mismatch: 0, identity: 1.0

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
ttgaggctagcggatatacttttgaatacg	Protospacer
******************************

7. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to KJ591604 (Listeria phage LMTA-148, complete genome) position: , mismatch: 0, identity: 1.0

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
ttgaggctagcggatatacttttgaatacg	Protospacer
******************************

8. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to KJ094033 (Listeria phage LP-048, complete genome) position: , mismatch: 0, identity: 1.0

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
ttgaggctagcggatatacttttgaatacg	Protospacer
******************************

9. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to NC_041862 (Listeria phage LP-064, complete genome) position: , mismatch: 0, identity: 1.0

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
ttgaggctagcggatatacttttgaatacg	Protospacer
******************************

10. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to JX126918 (Listeria phage LP-125, complete genome) position: , mismatch: 0, identity: 1.0

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
ttgaggctagcggatatacttttgaatacg	Protospacer
******************************

11. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 0, identity: 1.0

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
ttgaggctagcggatatacttttgaatacg	Protospacer
******************************

12. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to KJ535721 (Listeria phage List-36, complete genome) position: , mismatch: 0, identity: 1.0

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
ttgaggctagcggatatacttttgaatacg	Protospacer
******************************

13. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to MT438761 (Listeria virus P61, complete genome) position: , mismatch: 0, identity: 1.0

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaaagtaatagagataataaatact	Protospacer
******************************

14. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NC_047872 (Listeria phage LMTA-94, complete genome) position: , mismatch: 0, identity: 1.0

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaaagtaatagagataataaatact	Protospacer
******************************

15. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 0, identity: 1.0

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaaagtaatagagataataaatact	Protospacer
******************************

16. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 0, identity: 1.0

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaaagtaatagagataataaatact	Protospacer
******************************

17. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to KJ591604 (Listeria phage LMTA-148, complete genome) position: , mismatch: 0, identity: 1.0

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaaagtaatagagataataaatact	Protospacer
******************************

18. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to KJ591605 (Listeria phage LMTA-57, complete genome) position: , mismatch: 0, identity: 1.0

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaaagtaatagagataataaatact	Protospacer
******************************

19. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to MN128594 (Listeria phage LP-066, complete genome) position: , mismatch: 0, identity: 1.0

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaaagtaatagagataataaatact	Protospacer
******************************

20. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to MN128594 (Listeria phage LP-066, complete genome) position: , mismatch: 0, identity: 1.0

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaaagtaatagagataataaatact	Protospacer
******************************

21. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NC_042048 (Listeria phage LMTA-34, complete genome) position: , mismatch: 0, identity: 1.0

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaaagtaatagagataataaatact	Protospacer
******************************

22. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NC_041862 (Listeria phage LP-064, complete genome) position: , mismatch: 0, identity: 1.0

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaaagtaatagagataataaatact	Protospacer
******************************

23. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to KJ094030 (Listeria phage LP-083-2, complete genome) position: , mismatch: 0, identity: 1.0

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaaagtaatagagataataaatact	Protospacer
******************************

24. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to JX126918 (Listeria phage LP-125, complete genome) position: , mismatch: 0, identity: 1.0

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaaagtaatagagataataaatact	Protospacer
******************************

25. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NC_024360 (Listeria phage LMSP-25, complete genome) position: , mismatch: 0, identity: 1.0

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaaagtaatagagataataaatact	Protospacer
******************************

26. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to KJ535721 (Listeria phage List-36, complete genome) position: , mismatch: 0, identity: 1.0

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaaagtaatagagataataaatact	Protospacer
******************************

27. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to KJ094031 (Listeria phage LP-124, complete genome) position: , mismatch: 0, identity: 1.0

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaaagtaatagagataataaatact	Protospacer
******************************

28. spacer 1.23|337395|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 0, identity: 1.0

tgaggagagcccgtccagcgtcgaagtgga	CRISPR spacer
tgaggagagcccgtccagcgtcgaagtgga	Protospacer
******************************

29. spacer 1.23|337395|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 0, identity: 1.0

tgaggagagcccgtccagcgtcgaagtgga	CRISPR spacer
tgaggagagcccgtccagcgtcgaagtgga	Protospacer
******************************

30. spacer 1.23|337395|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 0, identity: 1.0

tgaggagagcccgtccagcgtcgaagtgga	CRISPR spacer
tgaggagagcccgtccagcgtcgaagtgga	Protospacer
******************************

31. spacer 1.30|337858|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 0, identity: 1.0

taaacggcgtattcacaggtgaaactgaag	CRISPR spacer
taaacggcgtattcacaggtgaaactgaag	Protospacer
******************************

32. spacer 1.30|337858|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 0, identity: 1.0

taaacggcgtattcacaggtgaaactgaag	CRISPR spacer
taaacggcgtattcacaggtgaaactgaag	Protospacer
******************************

33. spacer 1.31|337924|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 0, identity: 1.0

caagttgaagatattaactacattcagaca	CRISPR spacer
caagttgaagatattaactacattcagaca	Protospacer
******************************

34. spacer 1.31|337924|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 0, identity: 1.0

caagttgaagatattaactacattcagaca	CRISPR spacer
caagttgaagatattaactacattcagaca	Protospacer
******************************

35. spacer 1.32|337990|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 0, identity: 1.0

ttgctaattctttagcagtatctaaagtta	CRISPR spacer
ttgctaattctttagcagtatctaaagtta	Protospacer
******************************

36. spacer 1.34|338122|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 0, identity: 1.0

taatgatgagttacttggaatttgtacaat	CRISPR spacer
taatgatgagttacttggaatttgtacaat	Protospacer
******************************

37. spacer 1.35|338188|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_047872 (Listeria phage LMTA-94, complete genome) position: , mismatch: 0, identity: 1.0

tagtagtattcttagcagacaataaaagta	CRISPR spacer
tagtagtattcttagcagacaataaaagta	Protospacer
******************************

38. spacer 1.35|338188|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ591605 (Listeria phage LMTA-57, complete genome) position: , mismatch: 0, identity: 1.0

tagtagtattcttagcagacaataaaagta	CRISPR spacer
tagtagtattcttagcagacaataaaagta	Protospacer
******************************

39. spacer 1.35|338188|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 0, identity: 1.0

tagtagtattcttagcagacaataaaagta	CRISPR spacer
tagtagtattcttagcagacaataaaagta	Protospacer
******************************

40. spacer 1.35|338188|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MT438761 (Listeria virus P61, complete genome) position: , mismatch: 0, identity: 1.0

tagtagtattcttagcagacaataaaagta	CRISPR spacer
tagtagtattcttagcagacaataaaagta	Protospacer
******************************

41. spacer 1.35|338188|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MT668624 (Listeria phage LP-Mix_6.2, complete genome) position: , mismatch: 0, identity: 1.0

tagtagtattcttagcagacaataaaagta	CRISPR spacer
tagtagtattcttagcagacaataaaagta	Protospacer
******************************

42. spacer 1.35|338188|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ668718 (Listeria phage LMTA-34 hypothetical proteins and DNA modification protein genes, complete cds) position: , mismatch: 0, identity: 1.0

tagtagtattcttagcagacaataaaagta	CRISPR spacer
tagtagtattcttagcagacaataaaagta	Protospacer
******************************

43. spacer 1.35|338188|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 0, identity: 1.0

tagtagtattcttagcagacaataaaagta	CRISPR spacer
tagtagtattcttagcagacaataaaagta	Protospacer
******************************

44. spacer 1.35|338188|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 0, identity: 1.0

tagtagtattcttagcagacaataaaagta	CRISPR spacer
tagtagtattcttagcagacaataaaagta	Protospacer
******************************

45. spacer 1.35|338188|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MN128594 (Listeria phage LP-066, complete genome) position: , mismatch: 0, identity: 1.0

tagtagtattcttagcagacaataaaagta	CRISPR spacer
tagtagtattcttagcagacaataaaagta	Protospacer
******************************

46. spacer 1.35|338188|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_042048 (Listeria phage LMTA-34, complete genome) position: , mismatch: 0, identity: 1.0

tagtagtattcttagcagacaataaaagta	CRISPR spacer
tagtagtattcttagcagacaataaaagta	Protospacer
******************************

47. spacer 1.35|338188|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_041862 (Listeria phage LP-064, complete genome) position: , mismatch: 0, identity: 1.0

tagtagtattcttagcagacaataaaagta	CRISPR spacer
tagtagtattcttagcagacaataaaagta	Protospacer
******************************

48. spacer 1.35|338188|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ094030 (Listeria phage LP-083-2, complete genome) position: , mismatch: 0, identity: 1.0

tagtagtattcttagcagacaataaaagta	CRISPR spacer
tagtagtattcttagcagacaataaaagta	Protospacer
******************************

49. spacer 1.35|338188|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to JX126918 (Listeria phage LP-125, complete genome) position: , mismatch: 0, identity: 1.0

tagtagtattcttagcagacaataaaagta	CRISPR spacer
tagtagtattcttagcagacaataaaagta	Protospacer
******************************

50. spacer 1.35|338188|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_024360 (Listeria phage LMSP-25, complete genome) position: , mismatch: 0, identity: 1.0

tagtagtattcttagcagacaataaaagta	CRISPR spacer
tagtagtattcttagcagacaataaaagta	Protospacer
******************************

51. spacer 1.35|338188|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 0, identity: 1.0

tagtagtattcttagcagacaataaaagta	CRISPR spacer
tagtagtattcttagcagacaataaaagta	Protospacer
******************************

52. spacer 1.35|338188|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ094031 (Listeria phage LP-124, complete genome) position: , mismatch: 0, identity: 1.0

tagtagtattcttagcagacaataaaagta	CRISPR spacer
tagtagtattcttagcagacaataaaagta	Protospacer
******************************

53. spacer 1.39|338452|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MH299806 (Listeria phage LP-KV022, complete genome) position: , mismatch: 0, identity: 1.0

ccatattagcacagttattatactactatc	CRISPR spacer
ccatattagcacagttattatactactatc	Protospacer
******************************

54. spacer 1.39|338452|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MN114083 (Listeria phage LP-013, complete genome) position: , mismatch: 0, identity: 1.0

ccatattagcacagttattatactactatc	CRISPR spacer
ccatattagcacagttattatactactatc	Protospacer
******************************

55. spacer 1.39|338452|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_021785 (Listeria phage LP-110, complete genome) position: , mismatch: 0, identity: 1.0

ccatattagcacagttattatactactatc	CRISPR spacer
ccatattagcacagttattatactactatc	Protospacer
******************************

56. spacer 1.39|338452|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MN128593 (Listeria phage LP-031, complete genome) position: , mismatch: 0, identity: 1.0

ccatattagcacagttattatactactatc	CRISPR spacer
ccatattagcacagttattatactactatc	Protospacer
******************************

57. spacer 1.39|338452|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_021787 (Listeria phage LP-037, complete genome) position: , mismatch: 0, identity: 1.0

ccatattagcacagttattatactactatc	CRISPR spacer
ccatattagcacagttattatactactatc	Protospacer
******************************

58. spacer 1.39|338452|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to JX442241 (Listeria phage P70, complete genome) position: , mismatch: 0, identity: 1.0

ccatattagcacagttattatactactatc	CRISPR spacer
ccatattagcacagttattatactactatc	Protospacer
******************************

59. spacer 1.39|338452|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ094020 (Listeria phage LP-026, complete genome) position: , mismatch: 0, identity: 1.0

ccatattagcacagttattatactactatc	CRISPR spacer
ccatattagcacagttattatactactatc	Protospacer
******************************

60. spacer 1.39|338452|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ094021 (Listeria phage LP-114, complete genome) position: , mismatch: 0, identity: 1.0

ccatattagcacagttattatactactatc	CRISPR spacer
ccatattagcacagttattatactactatc	Protospacer
******************************

61. spacer 1.39|338452|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MN114082 (Listeria phage LP-010, complete genome) position: , mismatch: 0, identity: 1.0

ccatattagcacagttattatactactatc	CRISPR spacer
ccatattagcacagttattatactactatc	Protospacer
******************************

62. spacer 1.39|338452|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ094026 (Listeria phage LP-032 contig 3, partial genome) position: , mismatch: 0, identity: 1.0

ccatattagcacagttattatactactatc	CRISPR spacer
ccatattagcacagttattatactactatc	Protospacer
******************************

63. spacer 3.5|2172925|34|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

taaattactttcgaacaatgccgctaacgcttct	CRISPR spacer
taaattactttcgaacaatgccgctaacgcttct	Protospacer
**********************************

64. spacer 3.5|2172925|34|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

taaattactttcgaacaatgccgctaacgcttct	CRISPR spacer
taaattactttcgaacaatgccgctaacgcttct	Protospacer
**********************************

65. spacer 3.9|2173180|36|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

attgaggtgtattactgtcgccagttgagtaaccag	CRISPR spacer
attgaggtgtattactgtcgccagttgagtaaccag	Protospacer
************************************

66. spacer 3.9|2173180|36|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

attgaggtgtattactgtcgccagttgagtaaccag	CRISPR spacer
attgaggtgtattactgtcgccagttgagtaaccag	Protospacer
************************************

67. spacer 3.14|2173505|36|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

aatttattcatagcgggtgtgggaggttttgaactt	CRISPR spacer
aatttattcatagcgggtgtgggaggttttgaactt	Protospacer
************************************

68. spacer 3.18|2173769|35|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 0, identity: 1.0

cccttgaaagttttctttccgctcttatcattaat	CRISPR spacer
cccttgaaagttttctttccgctcttatcattaat	Protospacer
***********************************

69. spacer 3.19|2173833|36|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 0, identity: 1.0

aatatttaactcaataacccttgcttgtactgtaat	CRISPR spacer
aatatttaactcaataacccttgcttgtactgtaat	Protospacer
************************************

70. spacer 1.3|336074|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 1, identity: 0.967

gaatggatttattacggtcattttgcccaa	CRISPR spacer
gaatggatttattacggtcattttgctcaa	Protospacer
**************************.***

71. spacer 1.11|336603|30|NC_021838|CRISPRCasFinder,CRT matches to MT668624 (Listeria phage LP-Mix_6.2, complete genome) position: , mismatch: 1, identity: 0.967

aactcgtagtttttgttttcagatttagga	CRISPR spacer
aactcgtaatttttgttttcagatttagga	Protospacer
********.*********************

72. spacer 1.11|336603|30|NC_021838|CRISPRCasFinder,CRT matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 1, identity: 0.967

aactcgtagtttttgttttcagatttagga	CRISPR spacer
aactcgtagtttttgttttcagattttgga	Protospacer
************************** ***

73. spacer 1.11|336603|30|NC_021838|CRISPRCasFinder,CRT matches to NC_025440 (Listeria phage WIL-1, complete genome) position: , mismatch: 1, identity: 0.967

aactcgtagtttttgttttcagatttagga	CRISPR spacer
aactcgtaatttttgttttcagatttagga	Protospacer
********.*********************

74. spacer 1.11|336603|30|NC_021838|CRISPRCasFinder,CRT matches to NC_047872 (Listeria phage LMTA-94, complete genome) position: , mismatch: 1, identity: 0.967

aactcgtagtttttgttttcagatttagga	CRISPR spacer
aactcgtaatttttgttttcagatttagga	Protospacer
********.*********************

75. spacer 1.11|336603|30|NC_021838|CRISPRCasFinder,CRT matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 1, identity: 0.967

aactcgtagtttttgttttcagatttagga	CRISPR spacer
aactcgtaatttttgttttcagatttagga	Protospacer
********.*********************

76. spacer 1.11|336603|30|NC_021838|CRISPRCasFinder,CRT matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 1, identity: 0.967

aactcgtagtttttgttttcagatttagga	CRISPR spacer
aactcgtagtttttgttttcagattttgga	Protospacer
************************** ***

77. spacer 1.11|336603|30|NC_021838|CRISPRCasFinder,CRT matches to KJ591605 (Listeria phage LMTA-57, complete genome) position: , mismatch: 1, identity: 0.967

aactcgtagtttttgttttcagatttagga	CRISPR spacer
aactcgtagtttttgttttcagattttgga	Protospacer
************************** ***

78. spacer 1.11|336603|30|NC_021838|CRISPRCasFinder,CRT matches to MN128594 (Listeria phage LP-066, complete genome) position: , mismatch: 1, identity: 0.967

aactcgtagtttttgttttcagatttagga	CRISPR spacer
aactcgtaatttttgttttcagatttagga	Protospacer
********.*********************

79. spacer 1.11|336603|30|NC_021838|CRISPRCasFinder,CRT matches to NC_042048 (Listeria phage LMTA-34, complete genome) position: , mismatch: 1, identity: 0.967

aactcgtagtttttgttttcagatttagga	CRISPR spacer
aactcgtaatttttgttttcagatttagga	Protospacer
********.*********************

80. spacer 1.11|336603|30|NC_021838|CRISPRCasFinder,CRT matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 1, identity: 0.967

aactcgtagtttttgttttcagatttagga	CRISPR spacer
aactcgtaatttttgttttcagatttagga	Protospacer
********.*********************

81. spacer 1.11|336603|30|NC_021838|CRISPRCasFinder,CRT matches to NC_041862 (Listeria phage LP-064, complete genome) position: , mismatch: 1, identity: 0.967

aactcgtagtttttgttttcagatttagga	CRISPR spacer
aactcgtaatttttgttttcagatttagga	Protospacer
********.*********************

82. spacer 1.11|336603|30|NC_021838|CRISPRCasFinder,CRT matches to KJ094030 (Listeria phage LP-083-2, complete genome) position: , mismatch: 1, identity: 0.967

aactcgtagtttttgttttcagatttagga	CRISPR spacer
aactcgtaatttttgttttcagatttagga	Protospacer
********.*********************

83. spacer 1.11|336603|30|NC_021838|CRISPRCasFinder,CRT matches to JX126918 (Listeria phage LP-125, complete genome) position: , mismatch: 1, identity: 0.967

aactcgtagtttttgttttcagatttagga	CRISPR spacer
aactcgtaatttttgttttcagatttagga	Protospacer
********.*********************

84. spacer 1.11|336603|30|NC_021838|CRISPRCasFinder,CRT matches to NC_024360 (Listeria phage LMSP-25, complete genome) position: , mismatch: 1, identity: 0.967

aactcgtagtttttgttttcagatttagga	CRISPR spacer
aactcgtaatttttgttttcagatttagga	Protospacer
********.*********************

85. spacer 1.11|336603|30|NC_021838|CRISPRCasFinder,CRT matches to KJ094031 (Listeria phage LP-124, complete genome) position: , mismatch: 1, identity: 0.967

aactcgtagtttttgttttcagatttagga	CRISPR spacer
aactcgtaatttttgttttcagatttagga	Protospacer
********.*********************

86. spacer 1.12|336669|30|NC_021838|CRISPRCasFinder,CRT matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 1, identity: 0.967

tgttactgcttcgccgatgcttgttttacc	CRISPR spacer
tgttactgcttcgccaatgcttgttttacc	Protospacer
***************.**************

87. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to NC_047872 (Listeria phage LMTA-94, complete genome) position: , mismatch: 1, identity: 0.967

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
ttgaggctagcggatatacttttgaatatg	Protospacer
****************************.*

88. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 1, identity: 0.967

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
tcgaggctagcggatatacttttgaatacg	Protospacer
*.****************************

89. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 1, identity: 0.967

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaaagtaatagagataataaacact	Protospacer
**************************.***

90. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NC_025440 (Listeria phage WIL-1, complete genome) position: , mismatch: 1, identity: 0.967

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaacgtaatagagataataaatact	Protospacer
******** *********************

91. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 1, identity: 0.967

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaaagtaatagagataataaacact	Protospacer
**************************.***

92. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to DQ004855 (Listeria bacteriophage P100, complete genome) position: , mismatch: 1, identity: 0.967

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaaagtaatagagataataaacact	Protospacer
**************************.***

93. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 1, identity: 0.967

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaaagtaatagagacaataaatact	Protospacer
*******************.**********

94. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to KT319598 (UNVERIFIED: Listeria phage WIL-2 genomic sequence) position: , mismatch: 1, identity: 0.967

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaacgtaatagagataataaatact	Protospacer
******** *********************

95. spacer 1.17|336999|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.967

accgaaagattaagcttagacattgtatat	CRISPR spacer
accgaaagattaaacttagacattgtatat	Protospacer
*************.****************

96. spacer 1.23|337395|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.967

tgaggagagcccgtccagcgtcgaagtgga	CRISPR spacer
tgaggagagcccgtccagcgtcgaagtggg	Protospacer
*****************************.

97. spacer 1.23|337395|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.967

tgaggagagcccgtccagcgtcgaagtgga	CRISPR spacer
tgaggagagcccgtccagcgtcgaagtggg	Protospacer
*****************************.

98. spacer 1.31|337924|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.967

caagttgaagatattaactacattcagaca	CRISPR spacer
caagttgaagatattaactacatccagaca	Protospacer
***********************.******

99. spacer 1.31|337924|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.967

caagttgaagatattaactacattcagaca	CRISPR spacer
caagttgaagatattaactacatccagaca	Protospacer
***********************.******

100. spacer 1.31|337924|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.967

caagttgaagatattaactacattcagaca	CRISPR spacer
caagttgaagatattaactacatccagaca	Protospacer
***********************.******

101. spacer 1.32|337990|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 1, identity: 0.967

ttgctaattctttagcagtatctaaagtta	CRISPR spacer
ttgctaattctttagcagtgtctaaagtta	Protospacer
*******************.**********

102. spacer 1.32|337990|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 1, identity: 0.967

ttgctaattctttagcagtatctaaagtta	CRISPR spacer
ttgctaattctttagcagtgtctaaagtta	Protospacer
*******************.**********

103. spacer 1.35|338188|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_025440 (Listeria phage WIL-1, complete genome) position: , mismatch: 1, identity: 0.967

tagtagtattcttagcagacaataaaagta	CRISPR spacer
tagtagtattcttagcagacaacaaaagta	Protospacer
**********************.*******

104. spacer 1.35|338188|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 1, identity: 0.967

tagtagtattcttagcagacaataaaagta	CRISPR spacer
tagtagtattcttagcagacaacaaaagta	Protospacer
**********************.*******

105. spacer 1.35|338188|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 1, identity: 0.967

tagtagtattcttagcagacaataaaagta	CRISPR spacer
tagtagtattcttagcagacaacaaaagta	Protospacer
**********************.*******

106. spacer 1.35|338188|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ591604 (Listeria phage LMTA-148, complete genome) position: , mismatch: 1, identity: 0.967

tagtagtattcttagcagacaataaaagta	CRISPR spacer
tagtagtattcttagcagacaacaaaagta	Protospacer
**********************.*******

107. spacer 1.35|338188|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ094033 (Listeria phage LP-048, complete genome) position: , mismatch: 1, identity: 0.967

tagtagtattcttagcagacaataaaagta	CRISPR spacer
tagtagtattcttagcagacaacaaaagta	Protospacer
**********************.*******

108. spacer 3.15|2173570|36|NC_021838|CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.972

caactcggcttattttttatgtcaaaaagtaggaag	CRISPR spacer
caattcggcttattttttatgtcaaaaagtaggaag	Protospacer
***.********************************

109. spacer 3.20|2173898|37|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.973

gcatgggaacaatttgatgctctcggtttaagcattg	CRISPR spacer
gcatgggaacaatttgatgctctaggtttaagcattg	Protospacer
*********************** *************

110. spacer 1.11|336603|30|NC_021838|CRISPRCasFinder,CRT matches to KJ668718 (Listeria phage LMTA-34 hypothetical proteins and DNA modification protein genes, complete cds) position: , mismatch: 2, identity: 0.933

aactcgtagtttttgttttcagatttagga	CRISPR spacer
aactcgtaatttttgttttcagattttgga	Protospacer
********.***************** ***

111. spacer 1.11|336603|30|NC_021838|CRISPRCasFinder,CRT matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 2, identity: 0.933

aactcgtagtttttgttttcagatttagga	CRISPR spacer
aactcgtagtttttgttctcagattttgga	Protospacer
*****************.******** ***

112. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to NC_042048 (Listeria phage LMTA-34, complete genome) position: , mismatch: 2, identity: 0.933

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
ttgaggctagtggatatacttttgaatatg	Protospacer
**********.*****************.*

113. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to NC_024360 (Listeria phage LMSP-25, complete genome) position: , mismatch: 2, identity: 0.933

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
ttgaggctagtggatatacttttgaatatg	Protospacer
**********.*****************.*

114. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to KJ591605 (Listeria phage LMTA-57, complete genome) position: , mismatch: 2, identity: 0.933

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
ttgaggctagtggatatacttttgaatatg	Protospacer
**********.*****************.*

115. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 2, identity: 0.933

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaacgtaatagagataataaacact	Protospacer
******** *****************.***

116. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 2, identity: 0.933

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaacgtaatagagataataaacact	Protospacer
******** *****************.***

117. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to MT668624 (Listeria phage LP-Mix_6.2, complete genome) position: , mismatch: 2, identity: 0.933

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaacgtaatagagataataaacact	Protospacer
******** *****************.***

118. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to MT668624 (Listeria phage LP-Mix_6.2, complete genome) position: , mismatch: 2, identity: 0.933

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaacgtaatagagataataaacact	Protospacer
******** *****************.***

119. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to KJ094033 (Listeria phage LP-048, complete genome) position: , mismatch: 2, identity: 0.933

tatacaaaagtaatagagataataaatact	CRISPR spacer
tatacaaacgtaatagagataataaacact	Protospacer
******** *****************.***

120. spacer 1.22|337329|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MN114083 (Listeria phage LP-013, complete genome) position: , mismatch: 2, identity: 0.933

ttatccatgccatcatagccccaagcattg	CRISPR spacer
ttatccattccatcatatccccaagcattg	Protospacer
******** ******** ************

121. spacer 1.22|337329|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MN114082 (Listeria phage LP-010, complete genome) position: , mismatch: 2, identity: 0.933

ttatccatgccatcatagccccaagcattg	CRISPR spacer
ttatccattccatcatatccccaagcattg	Protospacer
******** ******** ************

122. spacer 1.24|337461|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 2, identity: 0.933

gagtcttgcgtactaaaccttatctgagga	CRISPR spacer
gagtcttgcgtactaaattttatctgagga	Protospacer
*****************..***********

123. spacer 1.24|337461|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 2, identity: 0.933

gagtcttgcgtactaaaccttatctgagga	CRISPR spacer
gagtcttgcgtactaaattttatctgagga	Protospacer
*****************..***********

124. spacer 1.32|337990|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 2, identity: 0.933

ttgctaattctttagcagtatctaaagtta	CRISPR spacer
ttgctaattctttagcagtgtctaaagtca	Protospacer
*******************.********.*

125. spacer 1.34|338122|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_025440 (Listeria phage WIL-1, complete genome) position: , mismatch: 2, identity: 0.933

taatgatgagttacttggaatttgtacaat	CRISPR spacer
tgatgatgagttacttgggatttgtacaat	Protospacer
*.****************.***********

126. spacer 1.34|338122|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ591605 (Listeria phage LMTA-57, complete genome) position: , mismatch: 2, identity: 0.933

taatgatgagttacttggaatttgtacaat	CRISPR spacer
tgatgatgagttacttgggatttgtacaat	Protospacer
*.****************.***********

127. spacer 1.34|338122|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ668718 (Listeria phage LMTA-34 hypothetical proteins and DNA modification protein genes, complete cds) position: , mismatch: 2, identity: 0.933

taatgatgagttacttggaatttgtacaat	CRISPR spacer
tgaggatgagttacttggaatttgtacaat	Protospacer
*.* **************************

128. spacer 1.34|338122|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 2, identity: 0.933

taatgatgagttacttggaatttgtacaat	CRISPR spacer
tgatgatgagttacttgggatttgtacaat	Protospacer
*.****************.***********

129. spacer 1.34|338122|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 2, identity: 0.933

taatgatgagttacttggaatttgtacaat	CRISPR spacer
tgatgatgagttacttgggatttgtacaat	Protospacer
*.****************.***********

130. spacer 1.39|338452|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MN904502 (Listeria phage LP-018, complete genome) position: , mismatch: 2, identity: 0.933

ccatattagcacagttattatactactatc	CRISPR spacer
ctattttagcacagttattatactactatc	Protospacer
*.** *************************

131. spacer 3.10|2173245|36|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 2, identity: 0.944

aagtgatacaatgtgttttttattgtcgatgtggac	CRISPR spacer
aagtgatacaatgtgttttttgttgtcaatgtggac	Protospacer
*********************.*****.********

132. spacer 3.20|2173898|37|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 2, identity: 0.946

gcatgggaacaatttgatgctctcggtttaagcattg	CRISPR spacer
gcatgggaacaatttgatgctcttgggttaagcattg	Protospacer
***********************.** **********

133. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to KJ668716 (Listeria phage LMTA-34 hypothetical protein genes, complete cds) position: , mismatch: 3, identity: 0.9

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
ttgaggctagtgggtatacttttgaatatg	Protospacer
**********.**.**************.*

134. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 3, identity: 0.9

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
tcgaggctagcgggtatacttttgaatatg	Protospacer
*.***********.**************.*

135. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to MN128594 (Listeria phage LP-066, complete genome) position: , mismatch: 3, identity: 0.9

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
tcgaggctagcgggtatacttttgaatatg	Protospacer
*.***********.**************.*

136. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to KJ094030 (Listeria phage LP-083-2, complete genome) position: , mismatch: 3, identity: 0.9

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
tcgaggctagcgggtatacttttgaatatg	Protospacer
*.***********.**************.*

137. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to KJ094031 (Listeria phage LP-124, complete genome) position: , mismatch: 3, identity: 0.9

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
tcgaggctagcgggtatacttttgaatatg	Protospacer
*.***********.**************.*

138. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to NC_025440 (Listeria phage WIL-1, complete genome) position: , mismatch: 3, identity: 0.9

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
tcgaggctagcgggtatacttttgaatatg	Protospacer
*.***********.**************.*

139. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to KT319598 (UNVERIFIED: Listeria phage WIL-2 genomic sequence) position: , mismatch: 3, identity: 0.9

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
tcgaggctagcgggtatacttttgaatatg	Protospacer
*.***********.**************.*

140. spacer 1.22|337329|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MH299806 (Listeria phage LP-KV022, complete genome) position: , mismatch: 3, identity: 0.9

ttatccatgccatcatagccccaagcattg	CRISPR spacer
ttatccattccatcatatccccaagcatta	Protospacer
******** ******** ***********.

141. spacer 1.22|337329|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 3, identity: 0.9

ttatccatgccatcatagccccaagcattg	CRISPR spacer
ttatccatgccatcatatccccacgcatta	Protospacer
***************** ***** *****.

142. spacer 1.22|337329|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_021785 (Listeria phage LP-110, complete genome) position: , mismatch: 3, identity: 0.9

ttatccatgccatcatagccccaagcattg	CRISPR spacer
ttatccattccatcatatccccaagcatta	Protospacer
******** ******** ***********.

143. spacer 1.32|337990|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 3, identity: 0.9

ttgctaattctttagcagtatctaaagtta	CRISPR spacer
tcgctaattccttagcagtgtctaaagtta	Protospacer
*.********.********.**********

144. spacer 1.34|338122|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 3, identity: 0.9

taatgatgagttacttggaatttgtacaat	CRISPR spacer
tggtgatgagttacttgggatttgtacaat	Protospacer
*..***************.***********

145. spacer 1.34|338122|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_047872 (Listeria phage LMTA-94, complete genome) position: , mismatch: 3, identity: 0.9

taatgatgagttacttggaatttgtacaat	CRISPR spacer
tgatgacgagttacttgggatttgtacaat	Protospacer
*.****.***********.***********

146. spacer 1.34|338122|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_042048 (Listeria phage LMTA-34, complete genome) position: , mismatch: 3, identity: 0.9

taatgatgagttacttggaatttgtacaat	CRISPR spacer
tgatgacgagttacttgggatttgtacaat	Protospacer
*.****.***********.***********

147. spacer 1.34|338122|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_024360 (Listeria phage LMSP-25, complete genome) position: , mismatch: 3, identity: 0.9

taatgatgagttacttggaatttgtacaat	CRISPR spacer
tgatgacgagttacttgggatttgtacaat	Protospacer
*.****.***********.***********

148. spacer 1.39|338452|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 3, identity: 0.9

ccatattagcacagttattatactactatc	CRISPR spacer
ctatattagtactgttattatactactatc	Protospacer
*.*******.** *****************

149. spacer 3.4|2172860|36|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 3, identity: 0.917

tccaaactccttccgcacattgggcaatattttata	CRISPR spacer
cccaaactccttccacacattggacaatattttata	Protospacer
.*************.********.************

150. spacer 1.32|337990|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_020157 (Anabaena cylindrica PCC 7122 plasmid pANACY.02, complete sequence) position: , mismatch: 4, identity: 0.867

ttgctaattctttagcagtatct--aaagtta	CRISPR spacer
ttgctaattgtgtagcagtatctacaaagt--	Protospacer
********* * ***********  *****

151. spacer 1.34|338122|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MT668624 (Listeria phage LP-Mix_6.2, complete genome) position: , mismatch: 4, identity: 0.867

taatgatgagttacttggaatttgtacaat	CRISPR spacer
tgacaatgagttacttgggatttgtacaat	Protospacer
*.*..*************.***********

152. spacer 1.34|338122|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MN128594 (Listeria phage LP-066, complete genome) position: , mismatch: 4, identity: 0.867

taatgatgagttacttggaatttgtacaat	CRISPR spacer
tgacaatgagttacttgggatttgtacaat	Protospacer
*.*..*************.***********

153. spacer 1.34|338122|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_041862 (Listeria phage LP-064, complete genome) position: , mismatch: 4, identity: 0.867

taatgatgagttacttggaatttgtacaat	CRISPR spacer
tgacaatgagttacttgggatttgtacaat	Protospacer
*.*..*************.***********

154. spacer 1.34|338122|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ094030 (Listeria phage LP-083-2, complete genome) position: , mismatch: 4, identity: 0.867

taatgatgagttacttggaatttgtacaat	CRISPR spacer
tgacaatgagttacttgggatttgtacaat	Protospacer
*.*..*************.***********

155. spacer 1.34|338122|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to JX126918 (Listeria phage LP-125, complete genome) position: , mismatch: 4, identity: 0.867

taatgatgagttacttggaatttgtacaat	CRISPR spacer
tgacaatgagttacttgggatttgtacaat	Protospacer
*.*..*************.***********

156. spacer 1.34|338122|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ094031 (Listeria phage LP-124, complete genome) position: , mismatch: 4, identity: 0.867

taatgatgagttacttggaatttgtacaat	CRISPR spacer
tgacaatgagttacttgggatttgtacaat	Protospacer
*.*..*************.***********

157. spacer 3.2|2172729|36|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to FW590615 (JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME) position: , mismatch: 4, identity: 0.889

aaaactagcgaatcaatacggaattaagaattacac	CRISPR spacer
aaaactagcaaatcaatacggaattaaggattataa	Protospacer
*********.******************.****.*

158. spacer 3.2|2172729|36|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to HI504184 (Sequence 26 from Patent EP2147092) position: , mismatch: 4, identity: 0.889

aaaactagcgaatcaatacggaattaagaattacac	CRISPR spacer
aaaactagcaaatcaatacggaattaaggattataa	Protospacer
*********.******************.****.*

159. spacer 3.2|2172729|36|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to AJ417489 (bacteriophage U153 int gene for U153 integrase) position: , mismatch: 4, identity: 0.889

aaaactagcgaatcaatacggaattaagaattacac	CRISPR spacer
aaaactagcaaatcaatacggaattaaggattataa	Protospacer
*********.******************.****.*

160. spacer 3.15|2173570|36|NC_021838|CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 4, identity: 0.889

caactcggcttattttttatgtcaaaaagtaggaag	CRISPR spacer
gagcaaggcttattttttatgtcaaaaagtaggaag	Protospacer
 *.*  ******************************

161. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NC_013373 (Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence) position: , mismatch: 5, identity: 0.833

tatacaaaagtaatagagataataaatact-	CRISPR spacer
aagactaaaataatagagataataaa-acta	Protospacer
 * ** ***.**************** ***

162. spacer 1.22|337329|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ094026 (Listeria phage LP-032 contig 3, partial genome) position: , mismatch: 5, identity: 0.833

ttatccatgccatcatagccccaagcattg	CRISPR spacer
tctttcattccatcataaccccaagcattg	Protospacer
*. *.*** ********.************

163. spacer 1.22|337329|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MN128593 (Listeria phage LP-031, complete genome) position: , mismatch: 5, identity: 0.833

ttatccatgccatcatagccccaagcattg	CRISPR spacer
tctttcattccatcataaccccaagcattg	Protospacer
*. *.*** ********.************

164. spacer 1.22|337329|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_021787 (Listeria phage LP-037, complete genome) position: , mismatch: 5, identity: 0.833

ttatccatgccatcatagccccaagcattg	CRISPR spacer
tctttcattccatcataaccccaagcattg	Protospacer
*. *.*** ********.************

165. spacer 1.22|337329|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MN904502 (Listeria phage LP-018, complete genome) position: , mismatch: 5, identity: 0.833

ttatccatgccatcatagccccaagcattg	CRISPR spacer
tctttcattccatcataaccccaagcattg	Protospacer
*. *.*** ********.************

166. spacer 1.22|337329|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to JX442241 (Listeria phage P70, complete genome) position: , mismatch: 5, identity: 0.833

ttatccatgccatcatagccccaagcattg	CRISPR spacer
tctttcattccatcataaccccaagcattg	Protospacer
*. *.*** ********.************

167. spacer 1.22|337329|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ094020 (Listeria phage LP-026, complete genome) position: , mismatch: 5, identity: 0.833

ttatccatgccatcatagccccaagcattg	CRISPR spacer
tctttcattccatcataaccccaagcattg	Protospacer
*. *.*** ********.************

168. spacer 1.22|337329|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ094021 (Listeria phage LP-114, complete genome) position: , mismatch: 5, identity: 0.833

ttatccatgccatcatagccccaagcattg	CRISPR spacer
tctttcattccatcataaccccaagcattg	Protospacer
*. *.*** ********.************

169. spacer 3.4|2172860|36|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 5, identity: 0.861

tccaaactccttccgcacattgggcaatattttata	CRISPR spacer
tccaagctccttccgcacattgggcaaaattcaatg	Protospacer
*****.********************* ***. **.

170. spacer 1.11|336603|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_AP014867 (Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK3, complete sequence) position: , mismatch: 6, identity: 0.8

aactcgtagtttttgttttcagatttagga	CRISPR spacer
attatgtagtttttgttttcagatttagtt	Protospacer
* . .***********************

171. spacer 1.11|336603|30|NC_021838|CRISPRCasFinder,CRT matches to NC_011730 (Gloeothece citriformis PCC 7424 plasmid pP742403, complete sequence) position: , mismatch: 6, identity: 0.8

aactcgtagtttttgttttcagatttagga	CRISPR spacer
aaacgggagtttttgttttgagatttagaa	Protospacer
** . * ************ ********.*

172. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP031989 (Acinetobacter haemolyticus strain 5227 plasmid pAhaem5227b, complete sequence) position: , mismatch: 6, identity: 0.8

tatacaaaagtaatagagataataaatact	CRISPR spacer
tattagaaagtaatagagataatagaaaca	Protospacer
***  .******************.* **

173. spacer 1.19|337131|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021170 (Paenibacillus bovis strain BD3526 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

--cagactggccggaagaaaaagcgactctgg	CRISPR spacer
aatggac--gctggaagaaaaagcgaatctgg	Protospacer
  ..***  **.************** *****

174. spacer 1.24|337461|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 6, identity: 0.8

gagtcttgcgtactaaaccttatctgagga	CRISPR spacer
cggatttgcgtacgacaccttatctgagga	Protospacer
 .* .******** * **************

175. spacer 1.26|337593|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014203 (Clostridium baratii strain CDC51267 plasmid pNPD11_1, complete sequence) position: , mismatch: 6, identity: 0.8

gtatattagccatacaataagcccccatat	CRISPR spacer
ctttcttagccataccatatgcccccatag	Protospacer
 * * ********** *** *********

176. spacer 1.26|337593|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_004574 (Ruegeria sp. PR1b plasmid pSD25, complete sequence) position: , mismatch: 6, identity: 0.8

gtatattagccatacaataagcccccatat	CRISPR spacer
gcaaaatcgccatgcaataagcccccatag	Protospacer
*.* * * *****.***************

177. spacer 1.32|337990|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 6, identity: 0.8

ttgctaattctttagcagtatctaaagtta	CRISPR spacer
ttcctaattttttagcagtatctctaattt	Protospacer
** ******.*************  *.**

178. spacer 3.1|2172665|35|NC_021838|CRISPRCasFinder,CRT matches to MN694189 (Marine virus AFVG_250M578, complete genome) position: , mismatch: 6, identity: 0.829

atttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
aattttttcattttctaagccctcattttttatta	Protospacer
* *****************.****** ***.*  *

179. spacer 3.7|2173054|34|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 6, identity: 0.824

gcaaaacaacaaattggaaagatgttttttttct	CRISPR spacer
gtgataaaacaaataggaaagatgtttttttgct	Protospacer
*..* * ******* **************** **

180. spacer 1.11|336603|30|NC_021838|CRISPRCasFinder,CRT matches to NC_021793 (Cellulophaga phage phi48:2, complete genome) position: , mismatch: 7, identity: 0.767

aactcgtagtttttgttttcagatttagga	CRISPR spacer
attctatagttgttgttttcagatttagaa	Protospacer
* ....***** ****************.*

181. spacer 1.11|336603|30|NC_021838|CRISPRCasFinder,CRT matches to HQ683709 (Planktothrix phage PaV-LD, complete genome) position: , mismatch: 7, identity: 0.767

aactcgtag-----tttttgttttcagatttagga	CRISPR spacer
-----gtaagttcctttttggtttcagatttagga	Protospacer
     ***.     ****** **************

182. spacer 1.11|336603|30|NC_021838|CRISPRCasFinder,CRT matches to HQ683709 (Planktothrix phage PaV-LD, complete genome) position: , mismatch: 7, identity: 0.767

aactcgtag-----tttttgttttcagatttagga	CRISPR spacer
-----gtgggttcttttttggtttcagatttagga	Protospacer
     **.*     ****** **************

183. spacer 1.11|336603|30|NC_021838|CRISPRCasFinder,CRT matches to MF417937 (Uncultured Caudovirales phage clone 10F_6, partial genome) position: , mismatch: 7, identity: 0.767

aactcgtagtttttgttttcagatttagga	CRISPR spacer
gagttgtagtttttagtttcagatttagtt	Protospacer
.* *.*********. ************

184. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to NC_019388 (Thermus oshimai JL-2 plasmid pTHEOS02, complete sequence) position: , mismatch: 7, identity: 0.767

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
tttaggctagcggttatacttttgtttgga	Protospacer
** ********** **********  *. .

185. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP010824 (Thermus aquaticus Y51MC23 plasmid pTA16, complete sequence) position: , mismatch: 7, identity: 0.767

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
tttaggctagcggttatacttttgtttgga	Protospacer
** ********** **********  *. .

186. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NC_008226 (Clostridioides difficile 630 plasmid pCD630, complete sequence) position: , mismatch: 7, identity: 0.767

tatacaaaagtaatagagataataaatact	CRISPR spacer
attgggaaagtaatagagatactaaataat	Protospacer
  *. .*************** ****** *

187. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP016319 (Clostridioides difficile strain 630 delta erm plasmid pCD630, complete sequence) position: , mismatch: 7, identity: 0.767

tatacaaaagtaatagagataataaatact	CRISPR spacer
attgggaaagtaatagagatactaaataat	Protospacer
  *. .*************** ****** *

188. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_MG019959 (Clostridioides difficile isolate ERR017368_NODE12 plasmid pCD-WTSI1, complete sequence) position: , mismatch: 7, identity: 0.767

tatacaaaagtaatagagataataaatact	CRISPR spacer
attgggaaagtaatagagatactaaataat	Protospacer
  *. .*************** ****** *

189. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_MG019961 (Clostridioides difficile isolate ERR125910_NODE5 plasmid pCD-WTSI3, complete sequence) position: , mismatch: 7, identity: 0.767

tatacaaaagtaatagagataataaatact	CRISPR spacer
attgggaaagtaatagagatactaaataat	Protospacer
  *. .*************** ****** *

190. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_MG019962 (Clostridioides difficile isolate ERR125911_NODE11 plasmid pCD-WTSI4, complete sequence) position: , mismatch: 7, identity: 0.767

tatacaaaagtaatagagataataaatact	CRISPR spacer
attgggaaagtaatagagatactaaataat	Protospacer
  *. .*************** ****** *

191. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_MG019960 (Clostridioides difficile isolate ERR022513_NODE32 plasmid pCD-WTSI2, complete sequence) position: , mismatch: 7, identity: 0.767

tatacaaaagtaatagagataataaatact	CRISPR spacer
attgggaaagtaatagagatactaaataat	Protospacer
  *. .*************** ****** *

192. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_MG266000 (Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence) position: , mismatch: 7, identity: 0.767

tatacaaaagtaatagagataataaatact	CRISPR spacer
attgggaaagtaatagagatactaaataat	Protospacer
  *. .*************** ****** *

193. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP017574 (Bacillus thuringiensis strain SCG04-02 plasmid PSCG364, complete sequence) position: , mismatch: 7, identity: 0.767

tatacaaaagtaatagagataataaatact	CRISPR spacer
aatgaaaaaataatagagattataaatatg	Protospacer
 **. ****.********** *******.

194. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP012100 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence) position: , mismatch: 7, identity: 0.767

tatacaaaagtaatagagataataaatact	CRISPR spacer
aatgaaaaaataatagagattataaatatg	Protospacer
 **. ****.********** *******.

195. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NC_008014 (Lawsonia intracellularis PHE/MN1-00 plasmid 3, complete sequence) position: , mismatch: 7, identity: 0.767

tatacaaaagtaatagagataataaatact	CRISPR spacer
aaaataaaaataatagagataataagtaaa	Protospacer
 * *.****.***************.**

196. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NC_020130 (Lawsonia intracellularis N343 plasmid 3, complete sequence) position: , mismatch: 7, identity: 0.767

tatacaaaagtaatagagataataaatact	CRISPR spacer
aaaataaaaataatagagataataagtaaa	Protospacer
 * *.****.***************.**

197. spacer 1.19|337131|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049249 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

cagactggccggaagaaaaagcgactctgg	CRISPR spacer
gaataaggccggaagaaaaagcgcctctag	Protospacer
 *.   ***************** ****.*

198. spacer 1.20|337197|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MN694303 (Marine virus AFVG_250M806, complete genome) position: , mismatch: 7, identity: 0.767

-taatggacaaagctaccgaagacacaaaag	CRISPR spacer
gtgac-atcaaagctatcgaagacactaaag	Protospacer
 *.*. . ********.********* ****

199. spacer 1.32|337990|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_022774 (Bacillus phage Slash, complete genome) position: , mismatch: 7, identity: 0.767

ttgctaattctttagcagtatctaaagtta	CRISPR spacer
tgcggaattgtttagcagcatctaaagttt	Protospacer
*    **** ********.**********

200. spacer 1.32|337990|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to KT345706 (Vibrio phage vB_VorS-PVo5, complete genome) position: , mismatch: 7, identity: 0.767

ttgctaattctttagcagtatctaaagtta	CRISPR spacer
taagtaattgtttagcagtatctaaatcaa	Protospacer
* . ***** **************** . *

201. spacer 1.32|337990|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MN693549 (Marine virus AFVG_25M89, complete genome) position: , mismatch: 7, identity: 0.767

ttgctaattctttagcagtatctaaagtta	CRISPR spacer
tagctaattctttagcagcatctgaacaat	Protospacer
* ****************.****.**

202. spacer 1.32|337990|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to AP014070 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C2-MedDCM-OCT-S42-C71, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

ttgctaattctttagcagtatctaaagtta	CRISPR spacer
tgtcatactctttagcagtagctaaagttt	Protospacer
*  *  *.************ ********

203. spacer 1.32|337990|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to AP014069 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C2-MedDCM-OCT-S40-C35, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

ttgctaattctttagcagtatctaaagtta	CRISPR spacer
tgtcatactctttagcagtagctaaagttt	Protospacer
*  *  *.************ ********

204. spacer 1.1|335942|30|NC_021838|CRISPRCasFinder,CRT matches to MN855765 (Myoviridae sp. isolate 14, complete genome) position: , mismatch: 8, identity: 0.733

aaacataagttcaatctcttccccatcact	CRISPR spacer
acctttaagttcaacctctttcccatcagc	Protospacer
*  . *********.*****.******* .

205. spacer 1.6|336273|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MH791404 (UNVERIFIED: Aeromonas phage Assk, partial genome) position: , mismatch: 8, identity: 0.733

actccctgttatctacaaatatcgttgccc	CRISPR spacer
tctccctgttatatacaaatatgggataac	Protospacer
 *********** ********* *     *

206. spacer 1.6|336273|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_019538 (Aeromonas phage CC2, complete genome) position: , mismatch: 8, identity: 0.733

actccctgttatctacaaatatcgttgccc	CRISPR spacer
tctccctgttatatacaaatatgggataac	Protospacer
 *********** ********* *     *

207. spacer 1.8|336405|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP019039 (Bacillus velezensis strain GH1-13 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

aggctcctttatgatctgatttattgcttt	CRISPR spacer
gtatccaattatgatctgttttattgcttt	Protospacer
. ...*  ********** ***********

208. spacer 1.8|336405|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP019234 (Bacillus thuringiensis strain YGd22-03 plasmid pYGD83, complete sequence) position: , mismatch: 8, identity: 0.733

aggctcctttatgatctgatttattgcttt	CRISPR spacer
ctgctcctttatgatcttattaatttttac	Protospacer
  *************** *** *** .* .

209. spacer 1.9|336471|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 8, identity: 0.733

aagtcaaacactttaatcgcggcaccaata	CRISPR spacer
tcgtcaaacgctttgatcgcggcaccggcg	Protospacer
  *******.****.***********....

210. spacer 1.10|336537|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 8, identity: 0.733

aagtcaaacactttaatcgcggcaccaata	CRISPR spacer
tcgtcaaacgctttgatcgcggcaccggcg	Protospacer
  *******.****.***********....

211. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP017256 (Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence) position: , mismatch: 8, identity: 0.733

tatacaaaagtaatagagataataaatact	CRISPR spacer
gatacaaaagtaaaagagttaataatctag	Protospacer
 ************ **** ****** .

212. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP018746 (Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed1) position: , mismatch: 8, identity: 0.733

tatacaaaagtaatagagataataaatact	CRISPR spacer
aaagtaaaagtaaaagaaataataaataaa	Protospacer
 * ..******** ***.**********

213. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP028865 (Borreliella garinii strain 20047 plasmid lp36, complete sequence) position: , mismatch: 8, identity: 0.733

tatacaaaagtaatagagataataaatact	CRISPR spacer
aaagtaaaagtaaaagaaataataaataaa	Protospacer
 * ..******** ***.**********

214. spacer 1.16|336933|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009275 (Klebsiella variicola strain DX120E plasmid pKV1, complete sequence) position: , mismatch: 8, identity: 0.733

tagcaagagcgatattatcaatattatttc	CRISPR spacer
cagcaagagcgatattattaatgacgatac	Protospacer
.*****************.***. .. * *

215. spacer 1.16|336933|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MT786458 (Staphylococcus phage vB_SauH_SAP1, complete genome) position: , mismatch: 8, identity: 0.733

tagcaagagcgatattatcaatattatttc	CRISPR spacer
ttattagagccatattatcaatattacctt	Protospacer
* .. ***** ***************..*.

216. spacer 1.20|337197|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to HM452126 (Aeromonas phage phiAS5, complete genome) position: , mismatch: 8, identity: 0.733

taatggacaaagctaccgaagacacaaaag	CRISPR spacer
agatggtgaaagctaccgaagacaccatcc	Protospacer
 .****  ***************** *

217. spacer 1.21|337263|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 8, identity: 0.733

ggagtacctcttccggaatatcgaaaagag	CRISPR spacer
cccttacctcttccggcatatcgaacatcg	Protospacer
    ************ ******** *  *

218. spacer 1.28|337725|31|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047439 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-2, complete sequence) position: , mismatch: 8, identity: 0.742

tacgagattattcagaaccaaatgcaagaga	CRISPR spacer
aaaaagattattcaaaaccaaaagcaaggtt	Protospacer
 * .**********.******* *****.

219. spacer 1.28|337725|31|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047440 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence) position: , mismatch: 8, identity: 0.742

tacgagattattcagaaccaaatgcaagaga	CRISPR spacer
aaaaagattattcaaaaccaaaagcaaggtt	Protospacer
 * .**********.******* *****.

220. spacer 1.29|337792|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025513 (Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

ctaagaagaccaatgctgaaactgaagcgc	CRISPR spacer
tgaagaagaccaatggtgacactgacggca	Protospacer
. ************* *** ***** *

221. spacer 1.31|337924|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to AP017924 (Ralstonia phage RP12 DNA, complete genome) position: , mismatch: 8, identity: 0.733

caagttgaagatattaactacattcagaca	CRISPR spacer
gtccttgaagatattaacttcaatcagagc	Protospacer
    *************** ** *****

222. spacer 1.31|337924|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to AP017925 (Ralstonia phage RP31 DNA, complete genome) position: , mismatch: 8, identity: 0.733

caagttgaagatattaactacattcagaca	CRISPR spacer
gtccttgaagatattaacttcaatcagagc	Protospacer
    *************** ** *****

223. spacer 1.31|337924|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to AP014501 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S32-C4, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces) position: , mismatch: 8, identity: 0.733

caagttgaagatattaactacattcagaca	CRISPR spacer
caagatgaagatattaattacatcggtcta	Protospacer
**** ************.*****. .  .*

224. spacer 1.32|337990|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017574 (Bacillus thuringiensis strain SCG04-02 plasmid PSCG364, complete sequence) position: , mismatch: 8, identity: 0.733

ttgctaattctttagcagtatctaaagtta	CRISPR spacer
ccccatgtgctttaacagtatctaaagtta	Protospacer
.. *  .* *****.***************

225. spacer 1.32|337990|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010111 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-5, complete sequence) position: , mismatch: 8, identity: 0.733

ttgctaattctttagcagtatctaaagtta	CRISPR spacer
ccccatgtgctttaacagtatctaaagtta	Protospacer
.. *  .* *****.***************

226. spacer 1.32|337990|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026415 (Acinetobacter sp. ACNIH2 plasmid pACI-55cf, complete sequence) position: , mismatch: 8, identity: 0.733

ttgctaattctttagcagtatctaaagtta	CRISPR spacer
ttgctaattctttagaagcatcttcttctg	Protospacer
*************** **.****    .*.

227. spacer 1.32|337990|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MN694545 (Marine virus AFVG_250M894, complete genome) position: , mismatch: 8, identity: 0.733

ttgctaattctttagcagtatctaaagtta	CRISPR spacer
ccattaattgtttagcagtctctaaagatg	Protospacer
....***** ********* ******* *.

228. spacer 1.32|337990|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031992 (Acinetobacter haemolyticus strain 2126ch plasmid pAhaem2126chf, complete sequence) position: , mismatch: 8, identity: 0.733

ttgctaattctttagcagtatctaaagtta	CRISPR spacer
ttgctaattctttagaagcatcttcttctg	Protospacer
*************** **.****    .*.

229. spacer 1.32|337990|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018872 (Acinetobacter haemolyticus strain TJS01 plasmid pAHTJS1, complete sequence) position: , mismatch: 8, identity: 0.733

ttgctaattctttagcagtatctaaagtta	CRISPR spacer
ttgctaattctttagaagcatcttcttctg	Protospacer
*************** **.****    .*.

230. spacer 1.32|337990|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MH319731 (Marine virus AG-345-E02 Ga0172268_11 genomic sequence) position: , mismatch: 8, identity: 0.733

ttgctaattctttagcagtatctaaagtta	CRISPR spacer
gtcttaattttttagcagtatctaatatat	Protospacer
 * .*****.*************** .*

231. spacer 1.33|338056|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MN035989 (Leviviridae sp. isolate H3_Bulk_41_scaffold_462 RNA-dependent RNA polymerase (H3Bulk41462_000001), hypothetical protein (H3Bulk41462_000002), hypothetical protein (H3Bulk41462_000003), and hypothetical protein (H3Bulk41462_000004) genes, complete cds) position: , mismatch: 8, identity: 0.733

tacgaggagagacagtacaaacgtgaaaaa------	CRISPR spacer
tacgaagagagacagtagaaacg------atttccc	Protospacer
*****.*********** *****      *

232. spacer 1.36|338254|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_012970 (Methylovorus glucosetrophus SIP3-4 plasmid pMsip01, complete sequence) position: , mismatch: 8, identity: 0.733

cttttacagttacagcattgaataatattt	CRISPR spacer
cgacagcagttgcagcattgaaaaatatta	Protospacer
*  . .*****.********** ******

233. spacer 1.36|338254|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MN552143 (Lactococcus phage P1046, complete genome) position: , mismatch: 8, identity: 0.733

cttttacagttacagcattgaataatattt	CRISPR spacer
cagttacagttactgcattgaatagattag	Protospacer
*  ********** **********.  *

234. spacer 1.36|338254|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_010576 (Lactococcus phage 1706, complete genome) position: , mismatch: 8, identity: 0.733

cttttacagttacagcattgaataatattt	CRISPR spacer
cagttacagttactgcattgaatagattag	Protospacer
*  ********** **********.  *

235. spacer 1.36|338254|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MK779875 (Lactococcus phage CHPC971, complete genome) position: , mismatch: 8, identity: 0.733

cttttacagttacagcattgaataatattt	CRISPR spacer
cagttacagttactgcattgaatagattag	Protospacer
*  ********** **********.  *

236. spacer 1.40|338518|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040765 (Paracoccus sp. 2251 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

cgcacctgtgacacctaactggtctattgc	CRISPR spacer
gggctgagtgacaccgaactggtctatggc	Protospacer
 *  .  ******** *********** **

237. spacer 3.2|2172729|36|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_019743 (Microcoleus sp. PCC 7113 plasmid pMIC7113.08, complete sequence) position: , mismatch: 8, identity: 0.778

---aaaactagcgaatcaatacggaattaagaattacac	CRISPR spacer
ttcagagtta---aatcaatacggcagtaagaattacac	Protospacer
   *.*..**   *********** * ************

238. spacer 1.3|336074|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR136959 (Alteromonas sp. 76-1 plasmid pAlt76, complete sequence) position: , mismatch: 9, identity: 0.7

gaatggatttattacggtcattttgcccaa	CRISPR spacer
ctattgatttattacgatcattttgaaagc	Protospacer
  ** ***********.********   .

239. spacer 1.14|336801|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_AP017376 (Stanieria sp. NIES-3757 plasmid plasmid1 DNA, complete genome) position: , mismatch: 9, identity: 0.7

ttgaggctagcggatatacttttgaatacg	CRISPR spacer
cagaggctagaggatatacttttacagtta	Protospacer
. ******** ************. *  ..

240. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP039210 (Piscirickettsia salmonis strain Psal-103 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

241. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP048067 (Piscirickettsia salmonis strain Ps-8079A plasmid Ps8079A-p1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

242. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP039033 (Piscirickettsia salmonis strain Psal-070 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

243. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP038894 (Piscirickettsia salmonis strain Psal-006a plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

244. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP038924 (Piscirickettsia salmonis strain Psal-011 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

245. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP038953 (Piscirickettsia salmonis strain Psal-040 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

246. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP038958 (Piscirickettsia salmonis strain Psal-041 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

247. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP039196 (Piscirickettsia salmonis strain Psal-161 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

248. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP038812 (Piscirickettsia salmonis strain Psal-001 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

249. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP013769 (Piscirickettsia salmonis strain PM23019A plasmid p1PS3, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

250. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP033942 (Piscirickettsia salmonis strain EM-90 plasmid pPSEM90-5, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

251. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP039228 (Piscirickettsia salmonis strain SR1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

252. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP013761 (Piscirickettsia salmonis strain AY6492A plasmid p4PS1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

253. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP013774 (Piscirickettsia salmonis strain PM37984A plasmid p1PS4, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

254. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP013779 (Piscirickettsia salmonis strain PM51819A plasmid p1PS5, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

255. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP050945 (Piscirickettsia salmonis strain Ps-2192A plasmid Ps2192A-p7, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

256. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP038892 (Piscirickettsia salmonis strain Psal-005 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

257. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP038914 (Piscirickettsia salmonis strain Psal-010a plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

258. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP038968 (Piscirickettsia salmonis strain Psal-068 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

259. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP039202 (Piscirickettsia salmonis strain Psal-163 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

260. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP039205 (Piscirickettsia salmonis strain Psal-182 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

261. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP039235 (Piscirickettsia salmonis strain BI1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

262. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP039241 (Piscirickettsia salmonis strain MR5 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

263. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP039042 (Piscirickettsia salmonis strain Psal-072 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

264. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP039187 (Piscirickettsia salmonis strain Psal-159 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

265. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP038948 (Piscirickettsia salmonis strain Psal-028 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

266. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP038933 (Piscirickettsia salmonis strain Psal-025 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

267. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP038973 (Piscirickettsia salmonis strain Psal-069 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

268. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP039036 (Piscirickettsia salmonis strain Psal-071 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

269. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP039066 (Piscirickettsia salmonis strain Psal-107 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

270. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP038887 (Piscirickettsia salmonis strain Psal-004 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

271. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP039215 (Piscirickettsia salmonis strain Psal-104a plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

272. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP038909 (Piscirickettsia salmonis strain Psal-009 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

273. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP038938 (Piscirickettsia salmonis strain Psal-026 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

274. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP038963 (Piscirickettsia salmonis strain Psal-051 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

275. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP038877 (Piscirickettsia salmonis strain Psal-002 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

276. spacer 1.15|336867|30|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP038882 (Piscirickettsia salmonis strain Psal-003 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tatacaaaagtaatagagataataaatact	CRISPR spacer
ctcacaaaagtaatagatataaaaaaagac	Protospacer
. .************** **** *** . .

277. spacer 1.20|337197|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MN393079 (Salmonella virus VSiA, complete genome) position: , mismatch: 9, identity: 0.7

taatggacaaagctaccgaagacacaaaag	CRISPR spacer
tcgaatacaaagcaaccgaagacacaatgc	Protospacer
* . . ******* ************* .

278. spacer 1.20|337197|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to MH424444 (Salmonella virus VSiP, complete genome) position: , mismatch: 9, identity: 0.7

taatggacaaagctaccgaagacacaaaag	CRISPR spacer
tcgaatacaaagcaaccgaagacacaatgc	Protospacer
* . . ******* ************* .

279. spacer 1.21|337263|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045296 (Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

ggagtacctcttccggaatatcgaaaagag	CRISPR spacer
accattcctcatccggaatatcgaaaaatt	Protospacer
.  .* **** ****************.

280. spacer 3.1|2172665|35|NC_021838|CRISPRCasFinder,CRT matches to MK448625 (Streptococcus satellite phage Javan738, complete genome) position: , mismatch: 9, identity: 0.743

atttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
caggtcttcactttctaagtcctcatagttcatac	Protospacer
    *.****.**************** **** *

281. spacer 3.1|2172665|35|NC_021838|CRISPRCasFinder,CRT matches to MK448449 (Streptococcus satellite phage Javan356, complete genome) position: , mismatch: 9, identity: 0.743

atttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
caggtcttcactttctaagtcctcatagttcatac	Protospacer
    *.****.**************** **** *

282. spacer 3.1|2172665|35|NC_021838|CRISPRCasFinder,CRT matches to MK448636 (Streptococcus satellite phage Javan749, complete genome) position: , mismatch: 9, identity: 0.743

atttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
caggtcttcactttctaagtcctcatagttcagac	Protospacer
    *.****.**************** ****.*

283. spacer 3.1|2172665|35|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP045037 (Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

atttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
cataacttcatttactaagtccttatatttcttaa	Protospacer
  *  .******* *********.*******  **

284. spacer 3.1|2172665|35|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP018177 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence) position: , mismatch: 9, identity: 0.743

atttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
cataacttcatttactaagtccttatatttcttaa	Protospacer
  *  .******* *********.*******  **

285. spacer 3.1|2172665|35|NC_021838|CRISPRCasFinder,CRT matches to NZ_CP018181 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence) position: , mismatch: 9, identity: 0.743

atttttttcattttctaagtcctcatatttcaaaa	CRISPR spacer
cataacttcatttactaagtccttatatttcttaa	Protospacer
  *  .******* *********.*******  **

286. spacer 3.7|2173054|34|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

-----gcaaaacaacaaattggaaagatgttttttttct	CRISPR spacer
tttttggaaa-----aaattggaaatatgtttttttctt	Protospacer
     * ***     ********** **********..*

287. spacer 3.18|2173769|35|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 9, identity: 0.743

cccttgaaagttttctttccgctcttatcattaat	CRISPR spacer
tccttgaaagttttctttgctctctttttaatttc	Protospacer
.***************** * ***** *.* *  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

636 : 20159

Listeria_phage(88.89%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_051149954.1\|636_1983_-\|terminase	PBSX family phage terminase large subunit	A0A0B5CYJ6	Listeria_phage	1.4e-252	93.8
WP_003733717.1\|1948_2674_-	helix-turn-helix domain-containing protein	A0A0B5CTX0	Listeria_phage	4.4e-80	68.5
WP_003733718.1\|2717_2945_-	hypothetical protein	A0A0B5CTV3	Listeria_phage	2.4e-32	94.7
WP_003733719.1\|3220_3655_-	hypothetical protein	A8ASQ1	Listeria_phage	1.8e-57	76.4
WP_003733720.1\|3719_4217_-	Holliday junction resolvase RecU	A0A1L2JY30	Aeribacillus_phage	1.8e-32	49.3
WP_003733721.1\|4206_4389_-	hypothetical protein	A8ASP6	Listeria_phage	1.1e-16	79.4
WP_003733722.1\|4407_4890_-	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	8.5e-56	73.1
WP_003733723.1\|4890_5145_-	hypothetical protein	A0A059T5G2	Listeria_phage	3.4e-40	92.8
WP_003731837.1\|5290_5899_-	hypothetical protein	A8ATU1	Listeria_phage	1.4e-55	49.5
WP_117125109.1\|6288_6531_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_003731843.1\|6668_6884_-	hypothetical protein	NA	NA	NA	NA
WP_003731842.1\|6895_7063_-	hypothetical protein	A8ASN5	Listeria_phage	9.2e-18	80.0
WP_023553762.1\|7075_7606_-	hypothetical protein	A0A059T5F9	Listeria_phage	2.5e-85	85.2
WP_003733626.1\|7602_8523_-	hypothetical protein	U5Q085	Bacillus_phage	2.3e-33	59.7
WP_003733627.1\|8533_9445_-	recombinase RecT	NA	NA	NA	NA
WP_023553765.1\|9437_10949_-	ATPase	A0A2I7SC81	Paenibacillus_phage	1.7e-73	36.2
WP_003733629.1\|11181_11370_-	hypothetical protein	Q9T175	Listeria_phage	1.2e-21	80.6
WP_003733630.1\|11477_11693_-	hypothetical protein	Q9T176	Listeria_phage	9.7e-20	67.6
WP_003733631.1\|11689_12223_-	hypothetical protein	Q9T177	Listeria_phage	5.5e-80	87.6
WP_003733633.1\|12345_13125_-	phage antirepressor Ant	A0A059T6E7	Listeria_phage	2.1e-141	98.1
WP_003727749.1\|13188_13431_+	hypothetical protein	A0A059T7Q3	Listeria_phage	1.8e-38	100.0
WP_003727748.1\|13423_13585_-	hypothetical protein	A0A059T7X7	Listeria_phage	1.2e-19	98.1
WP_003727747.1\|13616_13898_-	hypothetical protein	A0A0B5CTX3	Listeria_phage	1.0e-40	100.0
WP_003733634.1\|13894_14131_-	hypothetical protein	A0A059T5E9	Listeria_phage	3.3e-37	100.0
WP_003733635.1\|14142_14337_-	hypothetical protein	A0A059T6E5	Listeria_phage	6.9e-25	93.8
WP_003733636.1\|14340_14592_-	helix-turn-helix transcriptional regulator	A8ATX6	Listeria_phage	1.9e-38	97.6
WP_003733637.1\|14740_15223_+	helix-turn-helix transcriptional regulator	A8ATX5	Listeria_phage	1.9e-31	78.0
WP_003733638.1\|15378_15546_+	hypothetical protein	NA	NA	NA	NA
WP_003733640.1\|15835_16558_+	hypothetical protein	A0A059T7P9	Listeria_phage	2.8e-103	97.9
WP_003733641.1\|16580_17186_+	hypothetical protein	NA	NA	NA	NA
WP_003749252.1\|17198_17621_+	hypothetical protein	NA	NA	NA	NA
WP_003733643.1\|17836_18724_+	hypothetical protein	A0A0B5CYL8	Listeria_phage	5.6e-162	100.0
WP_003733644.1\|18800_20159_+	recombinase family protein	Q8LTD8	Listeria_phage	2.5e-254	98.5

DBSCAN-SWA_2

164369 : 172211

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003725407.1\|164369_165341_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
WP_003731212.1\|165348_166317_-	YvcK family protein	A1IMD5	Streptococcus_phage	1.8e-68	43.6
WP_003722606.1\|166318_167194_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
WP_003731211.1\|167301_169032_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	2.8e-173	53.0
WP_003741152.1\|169073_170135_-	galactose mutarotase	NA	NA	NA	NA
WP_003731209.1\|170151_171135_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	1.5e-51	38.1
WP_003722610.1\|171251_172211_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7

DBSCAN-SWA_3

258669 : 325011

Listeria_phage(85.45%)

protease,tail,integrase,terminase,tRNA,holin

attL 285901:285950|attR 325099:325148

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728400.1\|258669_260340_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_003723610.1\|260336_260786_-	DUF1934 domain-containing protein	NA	NA	NA	NA
WP_003726106.1\|260863_261517_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_071661788.1\|261551_261776_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA
WP_003731604.1\|261810_263133_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.9e-28	32.4
WP_003726109.1\|263147_263984_-	lipoyl-[GcvH]:protein N-lipoyltransferase	NA	NA	NA	NA
WP_003723615.1\|264301_264502_-	hypothetical protein	NA	NA	NA	NA
WP_003723616.1\|264524_264848_-	YxeA family protein	NA	NA	NA	NA
WP_014930032.1\|265001_266663_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003726112.1\|266797_267412_-	SdpI family protein	NA	NA	NA	NA
WP_003726113.1\|267435_268068_-	nicotinamidase	NA	NA	NA	NA
WP_003726114.1\|268068_268593_-	dihydrofolate reductase	NA	NA	NA	NA
WP_003731606.1\|268595_269594_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_003731607.1\|269690_269963_-	hypothetical protein	NA	NA	NA	NA
WP_003726117.1\|270011_270923_-	cation transporter	NA	NA	NA	NA
WP_003731608.1\|271300_272128_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_003731609.1\|272242_273118_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_003728392.1\|273128_273422_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003733660.1\|273371_273578_-	hypothetical protein	NA	NA	NA	NA
WP_003728390.1\|273646_274315_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.5e-38	41.6
WP_003726476.1\|274314_275403_-	ABC transporter permease	NA	NA	NA	NA
WP_003731610.1\|275481_276861_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.5e-57	44.3
WP_003731611.1\|276857_277535_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.4e-58	48.6
WP_003726479.1\|277581_278367_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_003731613.1\|278428_278905_-	DUF1641 domain-containing protein	NA	NA	NA	NA
WP_003728388.1\|278904_281892_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA
WP_003728387.1\|282389_283232_+	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	NA	NA	NA	NA
WP_003728386.1\|283281_284763_-	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_003728385.1\|284863_285751_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
285901:285950	attL	NA	NA	NA	NA
WP_003731277.1\|286374_286608_+	hypothetical protein	A8ATW9	Listeria_phage	4.3e-13	100.0
WP_003731276.1\|286639_286891_+	hypothetical protein	A8ATW8	Listeria_phage	2.0e-40	100.0
WP_003722518.1\|286891_287341_+	anti-CRISPR protein AcrIIA1	A8ATW7	Listeria_phage	2.4e-76	100.0
WP_003733661.1\|287365_287863_+	AP2 domain-containing protein	A8ATW6	Listeria_phage	3.8e-91	100.0
WP_003722520.1\|288137_288911_+	DUF3825 domain-containing protein	A8ATW5	Listeria_phage	9.5e-150	100.0
WP_003733663.1\|288951_289797_-	M15 family metallopeptidase	A0A059T7Y8	Listeria_phage	2.7e-137	94.7
WP_003722522.1\|289796_290078_-\|holin	holin	A8ASL4	Listeria_phage	3.4e-41	94.6
WP_003722523.1\|290090_290456_-	hypothetical protein	Q9T1A0	Listeria_phage	7.4e-12	100.0
WP_023553771.1\|290494_292660_-\|tail	phage tail protein	A8ATW1	Listeria_phage	0.0e+00	94.3
WP_003733727.1\|292672_294241_-\|tail	phage tail family protein	A8ATW0	Listeria_phage	3.1e-304	99.2
WP_023553773.1\|294237_299028_-\|tail	phage tail tape measure protein	A0A0B5CTS6	Listeria_phage	0.0e+00	88.4
WP_077286899.1\|299032_299344_-	hypothetical protein	A0A0B5D116	Listeria_phage	3.4e-42	97.8
WP_003733698.1\|299340_299772_-	hypothetical protein	A8ATV7	Listeria_phage	4.0e-73	97.9
WP_003733697.1\|299827_300517_-	Ig domain-containing protein	A8ATV6	Listeria_phage	2.8e-100	85.6
WP_003725064.1\|300521_300893_-	hypothetical protein	A8ATV5	Listeria_phage	8.5e-64	100.0
WP_003733696.1\|300889_301207_-	HK97 gp10 family phage protein	A8ATV4	Listeria_phage	4.6e-50	96.2
WP_003733695.1\|301196_301562_-	hypothetical protein	A8ATV3	Listeria_phage	9.9e-65	99.2
WP_003723785.1\|301561_301915_-	hypothetical protein	A8ATV2	Listeria_phage	8.4e-61	99.1
WP_003723786.1\|301915_302071_-	hypothetical protein	A0A0B5CYK6	Listeria_phage	1.0e-18	98.0
WP_003723787.1\|302084_302957_-	hypothetical protein	A0A0B5CTX8	Listeria_phage	2.3e-152	93.8
WP_003733694.1\|302979_303534_-	hypothetical protein	A8ATU9	Listeria_phage	3.8e-84	88.6
WP_003733693.1\|303628_304672_-	hypothetical protein	A0A0B5D111	Listeria_phage	1.0e-194	97.4
WP_003733692.1\|304676_306236_-	hypothetical protein	A8ATU7	Listeria_phage	9.2e-293	96.9
WP_003725072.1\|306250_307597_-\|terminase	PBSX family phage terminase large subunit	A0A0B5CYJ6	Listeria_phage	2.7e-253	94.1
WP_003733714.1\|307562_308303_-	hypothetical protein	A8ATU5	Listeria_phage	7.0e-134	98.8
WP_003725074.1\|308342_308570_-	hypothetical protein	A0A0B5CTV3	Listeria_phage	1.8e-32	94.7
WP_097529926.1\|308854_309274_-	hypothetical protein	A8ASQ1	Listeria_phage	8.8e-17	42.5
WP_003733712.1\|309562_309979_-	hypothetical protein	A0A2H4JEJ9	uncultured_Caudovirales_phage	1.2e-10	38.9
WP_003733711.1\|310093_310492_-	hypothetical protein	A8AU00	Listeria_phage	1.0e-54	78.8
WP_110109835.1\|310457_310598_-	BH0509 family protein	A8ATZ9	Listeria_phage	5.7e-05	50.0
WP_003733709.1\|310623_311106_-	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	1.7e-59	76.2
WP_003733708.1\|311106_311319_-	hypothetical protein	NA	NA	NA	NA
WP_003733707.1\|311323_311818_-	hypothetical protein	A0A1S5SDR7	Streptococcus_phage	6.1e-33	47.6
WP_023553777.1\|311840_312053_-	hypothetical protein	NA	NA	NA	NA
WP_031674202.1\|312158_312473_-	hypothetical protein	NA	NA	NA	NA
WP_162007589.1\|312489_312723_-	DUF3850 domain-containing protein	A0A059T7N3	Listeria_phage	1.2e-15	68.5
WP_003733704.1\|312742_313009_-	hypothetical protein	R4IBL5	Listeria_phage	1.3e-34	88.4
WP_023553779.1\|313005_313632_-	DUF1642 domain-containing protein	A8ATD8	Listeria_phage	3.1e-34	45.4
WP_003731843.1\|313628_313844_-	hypothetical protein	NA	NA	NA	NA
WP_003731842.1\|313855_314023_-	hypothetical protein	A8ASN5	Listeria_phage	9.2e-18	80.0
WP_023553782.1\|314035_314566_-	hypothetical protein	A0A059T5F9	Listeria_phage	3.5e-87	86.4
WP_003733679.1\|314562_315477_-	DnaD domain-containing protein	A0A0B5D175	Listeria_phage	8.4e-129	84.9
WP_003723965.1\|315514_316426_-	recombinase RecT	NA	NA	NA	NA
WP_003723967.1\|316418_317930_-	hypothetical protein	A0A2I7SC81	Paenibacillus_phage	6.1e-76	36.2
WP_003722564.1\|318162_318351_-	hypothetical protein	Q9T175	Listeria_phage	1.8e-22	82.3
WP_003733681.1\|318453_318660_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003733682.1\|318649_319180_-	hypothetical protein	A0A0B5D173	Listeria_phage	2.7e-79	89.6
WP_003733683.1\|319303_320080_-	phage antirepressor Ant	A0A0B5D0I2	Listeria_phage	6.9e-140	97.7
WP_003733684.1\|320143_320341_+	hypothetical protein	Q9T179	Listeria_phage	4.0e-20	96.0
WP_003722567.1\|320342_320624_-	hypothetical protein	A8ATX8	Listeria_phage	1.8e-37	95.7
WP_003733686.1\|320649_320934_-	hypothetical protein	A0A0B5D168	Listeria_phage	4.5e-41	85.1
WP_003733687.1\|320945_321140_-	hypothetical protein	A0A059T6E5	Listeria_phage	1.4e-25	95.3
WP_003733688.1\|321160_321370_-	helix-turn-helix domain-containing protein	A0A0B5D0D3	Listeria_phage	3.5e-30	95.6
WP_003724014.1\|321535_321958_+	helix-turn-helix transcriptional regulator	A0A0B5CYL9	Listeria_phage	7.7e-69	98.6
WP_003724015.1\|321973_322399_+	ImmA/IrrE family metallo-endopeptidase	A0A0B5CTZ7	Listeria_phage	2.2e-76	100.0
WP_003724016.1\|322413_323121_+	hypothetical protein	A0A0B5CTT6	Listeria_phage	2.8e-124	100.0
WP_003724017.1\|323179_323785_+	hypothetical protein	NA	NA	NA	NA
WP_003724018.1\|323847_325011_+\|integrase	site-specific integrase	S5MNZ2	Brevibacillus_phage	4.4e-50	31.2
325099:325148	attR	NA	NA	NA	NA

DBSCAN-SWA_4

740858 : 747385

Listeria_phage(33.33%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728215.1\|740858_741311_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9
WP_003721740.1\|741316_741652_-	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_003724946.1\|741868_742297_+	hypothetical protein	NA	NA	NA	NA
WP_003731177.1\|742308_742725_+	hypothetical protein	A8ASQ1	Listeria_phage	6.5e-20	37.9
WP_003728212.1\|743004_743394_+	DUF5072 family protein	NA	NA	NA	NA
WP_003721744.1\|743406_743919_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_003721745.1\|743966_744269_+	hypothetical protein	NA	NA	NA	NA
WP_003740367.1\|744310_744715_+	hypothetical protein	NA	NA	NA	NA
WP_003731178.1\|744701_746570_+	membrane protein	A0A097PAU2	Streptococcus_pyogenes_phage	3.5e-20	45.8
WP_003731179.1\|746566_747385_+\|tail	phage tail family protein	A0A060AFE1	Staphylococcus_phage	5.5e-39	35.0

DBSCAN-SWA_5

856318 : 864604

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003729814.1\|856318_857611_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.5e-17	33.0
WP_003731571.1\|857691_858405_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	3.9e-41	38.3
WP_003722248.1\|858416_858662_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003726212.1\|858665_859349_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003731570.1\|859341_861561_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	6.5e-159	40.8
WP_003722245.1\|861545_862973_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
WP_003726210.1\|862991_864041_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.2e-63	44.4
WP_003731569.1\|864037_864604_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	2.8e-26	38.5

DBSCAN-SWA_6

1355433 : 1414031

Streptococcus_phage(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003726416.1\|1355433_1357140_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_003726415.1\|1357180_1358443_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_003731335.1\|1358456_1359599_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_003727496.1\|1359613_1360402_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_003727497.1\|1360415_1361174_-	isoprenyl transferase	R9W0U9	Flavobacterium_phage	4.4e-22	42.1
WP_003723450.1\|1361404_1361962_-	ribosome recycling factor	NA	NA	NA	NA
WP_003723449.1\|1361961_1362690_-	UMP kinase	NA	NA	NA	NA
WP_003727498.1\|1362982_1363357_+	hypothetical protein	NA	NA	NA	NA
WP_012681273.1\|1363334_1364540_+	helicase SNF2	L0P6E9	Lactobacillus_phage	7.0e-91	46.6
WP_003731336.1\|1364529_1365834_+	DUF3440 domain-containing protein	A0A220GKF8	Streptococcus_phage	1.2e-133	52.1
WP_003726669.1\|1365843_1366350_+	ParB-like nuclease domain-containing protein	A0A220GKT8	Streptococcus_phage	1.4e-56	66.7
WP_003726668.1\|1366371_1367103_+	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	2.3e-81	58.0
WP_003726667.1\|1367151_1367391_-	YneF family protein	NA	NA	NA	NA
WP_003731337.1\|1367611_1369606_-	transketolase	NA	NA	NA	NA
WP_003727501.1\|1369752_1369980_-	DUF896 domain-containing protein	NA	NA	NA	NA
WP_003727502.1\|1370073_1370403_-	cell division suppressor protein YneA	NA	NA	NA	NA
WP_003723438.1\|1370558_1371173_+	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	9.3e-15	62.1
WP_003726565.1\|1371203_1371728_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003731338.1\|1371761_1373057_-	arsenic transporter	A0A2H4PQU3	Staphylococcus_phage	1.3e-146	62.1
WP_003723435.1\|1373200_1374535_-	type I glutamate--ammonia ligase	A0A1V0SJ53	Klosneuvirus	2.0e-06	26.4
WP_003719570.1\|1374605_1374974_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_003727505.1\|1375175_1376402_-	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_012681271.1\|1376394_1377618_-	GTPase HflX	NA	NA	NA	NA
WP_003719566.1\|1377728_1377962_-	RNA chaperone Hfq	NA	NA	NA	NA
WP_003726658.1\|1378083_1379001_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_003723738.1\|1379127_1380804_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_003726657.1\|1381036_1381735_-	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	6.4e-12	31.9
WP_003727507.1\|1381947_1383834_+	peptidoglycan O-acetyltransferase OatA	B5WZU0	Pseudomonas_phage	3.8e-43	32.2
WP_003731305.1\|1383866_1385687_-	class 1 internalin InlK	NA	NA	NA	NA
WP_003726814.1\|1386314_1386782_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_003727509.1\|1386864_1389324_-	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	1.1e-101	31.8
WP_003727510.1\|1389320_1391288_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	5.1e-123	42.5
WP_003731304.1\|1391468_1391876_-	CoA-binding protein	NA	NA	NA	NA
WP_003726698.1\|1392033_1392630_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003726697.1\|1392671_1393544_-	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_003724130.1\|1393546_1393858_-	hypothetical protein	NA	NA	NA	NA
WP_003727513.1\|1393880_1394300_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003726695.1\|1394402_1395182_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_003727514.1\|1395202_1396612_-\|protease	ATP-dependent protease ATPase subunit HslU	W6AS21	Erwinia_phage	7.5e-44	27.8
WP_003724001.1\|1396625_1397165_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_003731303.1\|1397185_1398088_-	tyrosine recombinase XerC	A0A142K7N4	Mycobacterium_phage	1.8e-14	29.5
WP_003731302.1\|1398370_1399675_-\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_003727517.1\|1399737_1401816_-	type I DNA topoisomerase	A0A1V0SB35	Catovirus	5.4e-107	37.5
WP_003727518.1\|1402088_1402949_-	DNA-protecting protein DprA	NA	NA	NA	NA
WP_003727519.1\|1403082_1403868_-	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	6.7e-26	37.6
WP_003726396.1\|1403864_1404728_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_003727520.1\|1404737_1405280_-	type I signal peptidase SipZ	NA	NA	NA	NA
WP_003731301.1\|1405381_1405951_-	type I signal peptidase SipY	NA	NA	NA	NA
WP_003726393.1\|1405985_1406552_-	type I signal peptidase SipX	NA	NA	NA	NA
WP_003723886.1\|1406670_1407930_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2
WP_003723884.1\|1408114_1409398_-	trigger factor	NA	NA	NA	NA
WP_003727521.1\|1409512_1410451_-	hypothetical protein	NA	NA	NA	NA
WP_003727523.1\|1411393_1411927_-\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003727524.1\|1412050_1412266_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003723563.1\|1412416_1412812_+	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
WP_003727526.1\|1412891_1414031_+\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_7

1439262 : 1481835

Listeria_phage(94.34%)

protease,tail,capsid,integrase,terminase,holin,portal

attL 1437238:1437261|attR 1481853:1481876

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1437238:1437261	attL	NA	NA	NA	NA
WP_023553808.1\|1439262_1439496_-	hypothetical protein	A8ATC5	Listeria_phage	2.8e-36	97.4
WP_023553810.1\|1439937_1440147_+	hypothetical protein	A0A059T7Z0	Listeria_phage	1.9e-28	100.0
WP_023553812.1\|1440476_1440854_+	anti-CRISPR protein AcrIIA3	A0A059T686	Listeria_phage	1.2e-60	90.4
WP_023553814.1\|1440885_1441236_+	AcrIIA2 family anti-CRISPR protein	Q9T195	Listeria_phage	1.8e-55	96.6
WP_012581438.1\|1441240_1441690_+	anti-CRISPR protein AcrIIA1	Q9T196	Listeria_phage	3.8e-74	97.3
WP_012951560.1\|1441909_1442908_-	DUF3644 domain-containing protein	A0A0N9RUA4	Staphylococcus_phage	3.9e-71	44.8
WP_023553816.1\|1443010_1443718_-	M15 family metallopeptidase	A8ATW4	Listeria_phage	1.2e-130	98.7
WP_003723294.1\|1443717_1443999_-\|holin	phage holin	A8ATW3	Listeria_phage	3.0e-45	100.0
WP_003733957.1\|1443998_1444304_-	hypothetical protein	A0A059T5E6	Listeria_phage	1.8e-43	100.0
WP_023553818.1\|1444354_1445446_-	hypothetical protein	A0A059T7R4	Listeria_phage	7.3e-188	91.2
WP_023553820.1\|1445435_1447730_-\|tail	phage tail protein	A0A059T7Y6	Listeria_phage	0.0e+00	98.8
WP_023553822.1\|1447745_1449395_-\|tail	phage tail family protein	A0A059T682	Listeria_phage	0.0e+00	99.6
WP_023553824.1\|1449387_1454307_-\|tail	phage tail tape measure protein	A0A059T5F4	Listeria_phage	0.0e+00	94.6
WP_009931626.1\|1454310_1454472_-	hypothetical protein	A0A059T6F4	Listeria_phage	4.3e-20	98.0
WP_014929553.1\|1454522_1454855_-	hypothetical protein	A0A059T7R2	Listeria_phage	2.5e-51	96.4
WP_014929552.1\|1454925_1455513_-\|tail	phage tail protein	A0A059T7Y4	Listeria_phage	2.9e-106	98.5
WP_009929557.1\|1455533_1455917_-	hypothetical protein	A0A059T681	Listeria_phage	9.4e-66	97.6
WP_009929555.1\|1455913_1456315_-	hypothetical protein	A8ATA2	Listeria_phage	4.9e-65	94.7
WP_009929554.1\|1456311_1456677_-	hypothetical protein	A0A059T6F2	Listeria_phage	7.1e-63	98.3
WP_023553826.1\|1456660_1456960_-	hypothetical protein	A0A059T7R0	Listeria_phage	1.2e-47	99.0
WP_023550473.1\|1456969_1457140_-	hypothetical protein	A0A059T7Y2	Listeria_phage	1.8e-21	98.2
WP_023553829.1\|1457146_1458298_-\|capsid	phage major capsid protein	A0A059T678	Listeria_phage	1.8e-213	99.2
WP_009928004.1\|1458324_1459041_-\|protease	Clp protease ClpP	A0A1S5SFF8	Streptococcus_phage	5.5e-67	57.4
WP_009928005.1\|1459037_1460168_-\|portal	phage portal protein	A0A059T6F0	Listeria_phage	4.6e-209	95.5
WP_009928006.1\|1460218_1460608_+	DUF2513 domain-containing protein	A0A1Q1PVT8	Staphylococcus_phage	4.8e-17	39.8
WP_023553831.1\|1460617_1462261_-\|terminase	terminase large subunit	A0A059T7Q8	Listeria_phage	0.0e+00	98.2
WP_031668694.1\|1462257_1462614_-\|terminase	P27 family phage terminase small subunit	A0A059T7Y1	Listeria_phage	1.0e-45	96.0
WP_003731652.1\|1462662_1462977_-	HNH endonuclease	A8ATF8	Listeria_phage	3.2e-56	98.1
WP_003731654.1\|1463566_1463992_-	DUF722 domain-containing protein	A0A059T6H4	Listeria_phage	1.8e-73	99.3
WP_003731655.1\|1464004_1464232_-	hypothetical protein	NA	NA	NA	NA
WP_003731656.1\|1464292_1464448_-	hypothetical protein	NA	NA	NA	NA
WP_003731657.1\|1464476_1464746_-	hypothetical protein	NA	NA	NA	NA
WP_023553835.1\|1464742_1465282_-	DUF3310 domain-containing protein	A8ATF5	Listeria_phage	8.6e-73	76.0
WP_003731659.1\|1465728_1465941_-	hypothetical protein	NA	NA	NA	NA
WP_012951539.1\|1465942_1466260_-	VRR-NUC domain-containing protein	A8ATF4	Listeria_phage	7.3e-48	89.3
WP_023553837.1\|1466598_1468872_-	primase	R4IBW2	Listeria_phage	0.0e+00	95.5
WP_023553839.1\|1468894_1469380_-	DUF669 domain-containing protein	R4ICE5	Listeria_phage	1.1e-87	98.8
WP_031659492.1\|1469404_1470661_-	DEAD/DEAH box helicase	R4IBK4	Listeria_phage	6.0e-218	94.5
WP_023553843.1\|1470724_1471414_-	AAA family ATPase	R4IDY8	Listeria_phage	4.8e-129	98.3
WP_003731665.1\|1471433_1471913_-	siphovirus Gp157 family protein	R4IBM0	Listeria_phage	7.6e-57	76.7
WP_023553845.1\|1471916_1472294_-	hypothetical protein	A8ATE8	Listeria_phage	2.7e-41	66.9
WP_023553848.1\|1472290_1472464_-	hypothetical protein	A8ATE7	Listeria_phage	4.0e-24	98.2
WP_003731670.1\|1472797_1473064_-	hypothetical protein	NA	NA	NA	NA
WP_003731671.1\|1473053_1473284_-	hypothetical protein	NA	NA	NA	NA
WP_003731672.1\|1473280_1473514_-	hypothetical protein	NA	NA	NA	NA
WP_003731705.1\|1473968_1474241_-	hypothetical protein	A8ATE2	Listeria_phage	2.0e-46	100.0
WP_003731704.1\|1474237_1474567_-	hypothetical protein	A8ATE1	Listeria_phage	1.1e-57	100.0
WP_014601509.1\|1474567_1474777_-	hypothetical protein	A8ATE0	Listeria_phage	1.7e-32	100.0
WP_014601510.1\|1474773_1475175_-	hypothetical protein	A8ATD9	Listeria_phage	2.6e-74	100.0
WP_014929526.1\|1475252_1475399_-	hypothetical protein	A8ATZ0	Listeria_phage	1.7e-20	100.0
WP_014601511.1\|1475395_1475956_-	DUF1642 domain-containing protein	A8ATY9	Listeria_phage	9.4e-107	100.0
WP_023553856.1\|1475960_1476416_-	class I SAM-dependent methyltransferase	A8ATY8	Listeria_phage	1.5e-81	92.1
WP_031644438.1\|1476424_1476955_-	hypothetical protein	A0A059T5F9	Listeria_phage	8.9e-99	98.3
WP_009931096.1\|1477142_1477295_-	hypothetical protein	A0A059T7S2	Listeria_phage	3.4e-19	98.0
WP_023553860.1\|1477529_1477715_-	hypothetical protein	A8ATD3	Listeria_phage	5.4e-27	93.4
WP_003730996.1\|1477717_1477960_-	hypothetical protein	A8ATD2	Listeria_phage	3.9e-41	93.8
WP_003730995.1\|1477981_1478173_-	helix-turn-helix transcriptional regulator	A0A059T5F8	Listeria_phage	5.4e-22	87.1
WP_003730994.1\|1478239_1478443_+	hypothetical protein	NA	NA	NA	NA
WP_014601389.1\|1478843_1479167_+	helix-turn-helix transcriptional regulator	Q8W5Y0	Listeria_phage	6.3e-39	73.8
WP_014601388.1\|1479183_1479636_+	ImmA/IrrE family metallo-endopeptidase	R4IBK9	Listeria_phage	1.0e-74	86.0
WP_014930257.1\|1479687_1480551_+	hypothetical protein	NA	NA	NA	NA
WP_023553862.1\|1480680_1481835_+\|integrase	site-specific integrase	A8ATC7	Listeria_phage	3.0e-208	95.3
1481853:1481876	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1601953 : 1609375

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012681222.1\|1601953_1603510_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	2.3e-17	28.1
WP_003724635.1\|1603638_1604043_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_003724634.1\|1604102_1604411_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003727000.1\|1604423_1605248_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	9.7e-68	52.6
WP_003721509.1\|1605259_1606750_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
WP_003727001.1\|1606958_1607972_-	glycosyltransferase	A0A1V0SAH6	Catovirus	1.8e-10	31.2
WP_003727002.1\|1607986_1608970_-	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	2.0e-11	33.8
WP_003730941.1\|1608991_1609375_-	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7

DBSCAN-SWA_9

3015185 : 3030470

Listeria_phage(94.12%)

holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003733517.1\|3015185_3015617_+	hypothetical protein	A8ATJ2	Listeria_phage	4.1e-25	81.7
WP_003733518.1\|3015613_3016114_+	AP2 domain-containing protein	A8ATW6	Listeria_phage	1.4e-64	71.8
WP_012951560.1\|3016319_3017318_-	DUF3644 domain-containing protein	A0A0N9RUA4	Staphylococcus_phage	3.9e-71	44.8
WP_003733520.1\|3017420_3018266_-	M15 family metallopeptidase	A0A059T7Y8	Listeria_phage	1.9e-135	92.6
WP_003733521.1\|3018265_3018532_-\|holin	phage holin	A0A059T684	Listeria_phage	9.8e-38	93.1
WP_003733522.1\|3018531_3018834_-	hypothetical protein	A0A059T5E6	Listeria_phage	7.7e-39	92.1
WP_014601493.1\|3018884_3021050_-\|tail	phage tail protein	A8ATW1	Listeria_phage	0.0e+00	94.5
WP_003733727.1\|3021062_3022631_-\|tail	phage tail family protein	A8ATW0	Listeria_phage	3.1e-304	99.2
WP_023553906.1\|3022627_3027427_-\|tail	phage tail tape measure protein	A8ATV9	Listeria_phage	0.0e+00	90.2
WP_077286899.1\|3027431_3027743_-	hypothetical protein	A0A0B5D116	Listeria_phage	3.4e-42	97.8
WP_003733698.1\|3027739_3028171_-	hypothetical protein	A8ATV7	Listeria_phage	4.0e-73	97.9
WP_003733697.1\|3028226_3028916_-	Ig domain-containing protein	A8ATV6	Listeria_phage	2.8e-100	85.6
WP_003725064.1\|3028920_3029292_-	hypothetical protein	A8ATV5	Listeria_phage	8.5e-64	100.0
WP_003733696.1\|3029288_3029606_-	HK97 gp10 family phage protein	A8ATV4	Listeria_phage	4.6e-50	96.2
WP_003733695.1\|3029595_3029961_-	hypothetical protein	A8ATV3	Listeria_phage	9.9e-65	99.2
WP_003723785.1\|3029960_3030314_-	hypothetical protein	A8ATV2	Listeria_phage	8.4e-61	99.1
WP_003723786.1\|3030314_3030470_-	hypothetical protein	A0A0B5CYK6	Listeria_phage	1.0e-18	98.0

Anti-CRISPR protein detection

Acr_ID: NC_021838.1|WP_003731276.1|286639_286891_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NC_021838.1|WP_003731672.1|1473280_1473514_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_021838.1|WP_003731276.1|286639_286891_+|hypothetical-protein

286639_286891_+

83 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|65	1.0	1	1.0

258669-325011

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location
NC_021838_1	TypeII	1.12\|336669\|30\|NC_021838\|CRISPRCasFinder,CRT	336669-336698	30	317796-317825
NC_021838_1	TypeII	1.13\|336735\|30\|NC_021838\|CRISPRCasFinder,CRT	336735-336764	30	297582-297611
NC_021838_3	Unclear	3.19\|2173833\|36\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	2173833-2173868	36	291638-291673

1. spacer 1.12|336669|30|NC_021838|CRISPRCasFinder,CRT matches to NC_021838 position: 317796-317825, mismatch: 0

tgttactgcttcgccgatgcttgttttacc	CRISPR spacer
tgttactgcttcgccgatgcttgttttacc	Protospacer
******************************

2. spacer 1.13|336735|30|NC_021838|CRISPRCasFinder,CRT matches to NC_021838 position: 297582-297611, mismatch: 0

ccaaaggagctaatttactccctaaaccta	CRISPR spacer
ccaaaggagctaatttactccctaaaccta	Protospacer
******************************

3. spacer 3.19|2173833|36|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_021838 position: 291638-291673, mismatch: 0

aatatttaactcaataacccttgcttgtactgtaat	CRISPR spacer
aatatttaactcaataacccttgcttgtactgtaat	Protospacer
************************************

NC_021838.1|WP_003731672.1|1473280_1473514_-|hypothetical-protein

1473280_1473514_-

77 aa aa

1439262-1481835

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_021838_1	TypeII	1.3\|336074\|30\|NC_021838\|CRISPRCasFinder,CRT,PILER-CR	336074-336103	30	1449107-1449078	0

1. spacer 1.3|336074|30|NC_021838|CRISPRCasFinder,CRT,PILER-CR matches to NC_021838 position: 1449107-1449078, mismatch: 0

gaatggatttattacggtcattttgcccaa	CRISPR spacer
gaatggatttattacggtcattttgcccaa	Protospacer
******************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_021828

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_021838

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information