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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_021825 Listeria monocytogenes strain J1-108, complete genome 1 crisprs WYL,RT,csa3,cas3,DEDDh,DinG,casR 0 0 208 0

Results visualization

1. NC_021825
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_021825_1 981930-982514 Orphan NA
7 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 39691 58 Listeria_phage(98.15%) plate,integrase,tail,terminase,portal,holin attL 21973:21987|attR 40083:40097
DBSCAN-SWA_2 55348 : 59845 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_3 65801 : 72047 5 Megavirus(33.33%) NA NA
DBSCAN-SWA_4 75519 : 76056 1 Listeria_phage(100.0%) NA NA
DBSCAN-SWA_5 79553 : 85282 5 Acanthocystis_turfacea_Chlorella_virus(66.67%) NA NA
DBSCAN-SWA_6 91537 : 97368 8 Enterobacteria_phage(33.33%) NA NA
DBSCAN-SWA_7 121578 : 130304 6 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_8 141983 : 143396 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_9 155357 : 165288 10 Streptococcus_phage(42.86%) NA NA
DBSCAN-SWA_10 179837 : 180656 1 Stx2-converting_phage(100.0%) NA NA
DBSCAN-SWA_11 185317 : 186148 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_12 199816 : 205553 7 Bifidobacterium_phage(50.0%) NA NA
DBSCAN-SWA_13 218682 : 219306 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_14 226440 : 227328 1 Amsacta_moorei_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_15 233020 : 243055 7 Tupanvirus(33.33%) NA NA
DBSCAN-SWA_16 249418 : 267638 17 Bacillus_phage(33.33%) tRNA NA
DBSCAN-SWA_17 288336 : 289914 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_18 293366 : 296830 2 Bodo_saltans_virus(50.0%) NA NA
DBSCAN-SWA_19 305131 : 309071 5 Streptococcus_virus(50.0%) NA NA
DBSCAN-SWA_20 315175 : 322098 5 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_21 328491 : 336633 6 Paramecium_bursaria_Chlorella_virus(25.0%) NA NA
DBSCAN-SWA_22 345382 : 347468 2 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_23 356225 : 363143 7 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_24 373876 : 374857 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_25 399499 : 401974 3 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_26 406594 : 409013 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_27 424317 : 428206 4 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_28 438719 : 440042 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_29 444449 : 449650 3 Only_Syngen_Nebraska_virus(33.33%) NA NA
DBSCAN-SWA_30 461498 : 467130 6 Pectobacterium_bacteriophage(33.33%) NA NA
DBSCAN-SWA_31 480588 : 482178 2 Lactococcus_phage(50.0%) NA NA
DBSCAN-SWA_32 487042 : 491136 5 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_33 495371 : 507532 10 Planktothrix_phage(28.57%) protease NA
DBSCAN-SWA_34 510621 : 513476 4 Bacillus_virus(66.67%) NA NA
DBSCAN-SWA_35 517131 : 520002 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_36 528217 : 536062 7 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_37 539981 : 542754 3 Agrobacterium_phage(33.33%) NA NA
DBSCAN-SWA_38 555085 : 556378 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_39 559832 : 562694 2 Lactococcus_phage(50.0%) NA NA
DBSCAN-SWA_40 575511 : 577220 3 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_41 584539 : 593765 11 Bacillus_phage(40.0%) NA NA
DBSCAN-SWA_42 596788 : 603411 7 Cedratvirus(25.0%) NA NA
DBSCAN-SWA_43 609094 : 609595 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_44 614771 : 615767 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_45 629249 : 629834 1 Aureococcus_anophage(100.0%) NA NA
DBSCAN-SWA_46 634202 : 634883 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_47 659307 : 660549 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_48 668773 : 669553 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_49 675577 : 676903 1 Phaeocystis_globosa_virus(100.0%) NA NA
DBSCAN-SWA_50 680798 : 681146 1 Clostridium_phage(100.0%) NA NA
DBSCAN-SWA_51 685920 : 689628 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_52 697097 : 701185 4 Moraxella_phage(33.33%) NA NA
DBSCAN-SWA_53 704848 : 708872 6 Indivirus(33.33%) NA NA
DBSCAN-SWA_54 724605 : 725511 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_55 734935 : 738546 3 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_56 745295 : 750985 5 Actinomyces_phage(33.33%) NA NA
DBSCAN-SWA_57 756982 : 758147 3 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_58 762629 : 765174 3 Lactococcus_phage(50.0%) integrase attL 756264:756278|attR 764347:764361
DBSCAN-SWA_59 772410 : 773746 2 Mycobacterium_phage(50.0%) NA NA
DBSCAN-SWA_60 780856 : 785965 4 Cronobacter_phage(50.0%) NA NA
DBSCAN-SWA_61 795731 : 802492 6 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_62 807528 : 809589 3 Klosneuvirus(50.0%) NA NA
DBSCAN-SWA_63 824647 : 826661 2 Powai_lake_megavirus(50.0%) NA NA
DBSCAN-SWA_64 832864 : 833482 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_65 841197 : 849324 9 Listeria_phage(80.0%) NA NA
DBSCAN-SWA_66 858939 : 859842 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_67 881572 : 882868 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_68 886838 : 890917 4 Lactobacillus_phage(50.0%) NA NA
DBSCAN-SWA_69 903388 : 904834 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_70 911000 : 916538 4 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_71 928353 : 938146 9 uncultured_virus(40.0%) tRNA,protease NA
DBSCAN-SWA_72 942777 : 952180 11 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_73 998321 : 999980 2 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_74 1010298 : 1013724 3 Cyanophage(50.0%) NA NA
DBSCAN-SWA_75 1018072 : 1019008 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_76 1052108 : 1053302 1 Mycobacterium_virus(100.0%) NA NA
DBSCAN-SWA_77 1066771 : 1068250 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_78 1074392 : 1074710 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_79 1081427 : 1084170 3 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_80 1090007 : 1093625 4 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_81 1102326 : 1103730 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_82 1109677 : 1110955 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_83 1119106 : 1122645 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_84 1126280 : 1133549 9 Megavirus(25.0%) NA NA
DBSCAN-SWA_85 1154533 : 1159890 4 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_86 1169934 : 1170642 1 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_87 1185587 : 1188430 3 Anomala_cuprea_entomopoxvirus(50.0%) NA NA
DBSCAN-SWA_88 1202958 : 1207528 4 Indivirus(33.33%) NA NA
DBSCAN-SWA_89 1229671 : 1239673 11 Geobacillus_virus(25.0%) NA NA
DBSCAN-SWA_90 1244863 : 1250448 6 Planktothrix_phage(66.67%) NA NA
DBSCAN-SWA_91 1254660 : 1255566 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_92 1266049 : 1266979 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_93 1300775 : 1301870 1 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_94 1311902 : 1318092 7 Acanthocystis_turfacea_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_95 1333793 : 1335464 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_96 1339263 : 1341906 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_97 1349548 : 1354190 4 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_98 1370415 : 1374104 2 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_99 1391487 : 1393429 3 Yellowstone_lake_mimivirus(50.0%) NA NA
DBSCAN-SWA_100 1397241 : 1400457 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_101 1403540 : 1403981 1 Faustovirus(100.0%) NA NA
DBSCAN-SWA_102 1408950 : 1409448 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_103 1423369 : 1424941 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_104 1428085 : 1432595 4 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_105 1444319 : 1448577 4 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_106 1461173 : 1462400 1 Phage_TP(100.0%) NA NA
DBSCAN-SWA_107 1471131 : 1473845 2 Pseudomonas_phage(50.0%) NA NA
DBSCAN-SWA_108 1477591 : 1478356 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_109 1483308 : 1490583 7 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_110 1493654 : 1496318 2 Acanthamoeba_polyphaga_mimivirus(50.0%) protease NA
DBSCAN-SWA_111 1511092 : 1512286 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_112 1528558 : 1529383 1 Micromonas_pusilla_virus(100.0%) NA NA
DBSCAN-SWA_113 1536414 : 1537077 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_114 1544850 : 1545402 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_115 1550080 : 1551484 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_116 1556800 : 1558639 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_117 1567687 : 1571243 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_118 1580110 : 1592155 12 Hokovirus(33.33%) NA NA
DBSCAN-SWA_119 1609449 : 1612813 2 Aureococcus_anophage(50.0%) NA NA
DBSCAN-SWA_120 1673782 : 1674589 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_121 1677718 : 1681637 6 Leuconostoc_phage(33.33%) NA NA
DBSCAN-SWA_122 1684863 : 1689186 3 Tupanvirus(50.0%) tRNA NA
DBSCAN-SWA_123 1696479 : 1703653 7 Canid_alphaherpesvirus(25.0%) NA NA
DBSCAN-SWA_124 1710653 : 1710755 1 Listeria_phage(100.0%) NA NA
DBSCAN-SWA_125 1719716 : 1722144 3 Lactococcus_phage(50.0%) NA NA
DBSCAN-SWA_126 1733295 : 1805968 69 Streptococcus_phage(21.74%) tRNA,protease NA
DBSCAN-SWA_127 1821401 : 1824211 2 Prochlorococcus_phage(100.0%) NA NA
DBSCAN-SWA_128 1830783 : 1834509 5 Enterococcus_phage(33.33%) NA NA
DBSCAN-SWA_129 1841894 : 1843322 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_130 1848232 : 1851970 3 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_131 1856360 : 1867384 8 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_132 1872707 : 1873754 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_133 1877527 : 1888837 9 Catovirus(20.0%) NA NA
DBSCAN-SWA_134 1906326 : 1910745 4 Organic_Lake_phycodnavirus(50.0%) holin NA
DBSCAN-SWA_135 1920257 : 1920866 1 Bacillus_thuringiensis_phage(100.0%) NA NA
DBSCAN-SWA_136 1926605 : 1930683 4 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_137 1933759 : 1936859 2 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_138 1947545 : 1954427 7 Catovirus(50.0%) NA NA
DBSCAN-SWA_139 1959131 : 1965459 5 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_140 1975385 : 1976015 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_141 1979780 : 1989657 6 Bacillus_phage(50.0%) tRNA NA
DBSCAN-SWA_142 1993885 : 2015690 19 Bacillus_phage(30.0%) tRNA NA
DBSCAN-SWA_143 2023694 : 2024012 1 Enterococcus_phage(100.0%) protease NA
DBSCAN-SWA_144 2033485 : 2036137 1 Catovirus(100.0%) tRNA NA
DBSCAN-SWA_145 2042512 : 2053160 8 Tupanvirus(20.0%) tRNA NA
DBSCAN-SWA_146 2060783 : 2065167 2 Streptomyces_phage(50.0%) NA NA
DBSCAN-SWA_147 2073904 : 2078039 4 Wolbachia_phage(33.33%) NA NA
DBSCAN-SWA_148 2087104 : 2089693 2 Cronobacter_phage(50.0%) tRNA NA
DBSCAN-SWA_149 2095969 : 2100054 3 Mycobacterium_phage(50.0%) NA NA
DBSCAN-SWA_150 2118435 : 2120787 3 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_151 2126467 : 2127388 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_152 2134492 : 2140866 2 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_153 2144010 : 2147569 2 Aureococcus_anophage(50.0%) NA NA
DBSCAN-SWA_154 2157350 : 2164929 5 Staphylococcus_phage(80.0%) tRNA NA
DBSCAN-SWA_155 2172139 : 2175483 4 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_156 2183266 : 2185556 2 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_157 2204648 : 2205110 1 Clostridium_botulinum_D_phage(100.0%) NA NA
DBSCAN-SWA_158 2212434 : 2216984 7 uncultured_Caudovirales_phage(33.33%) NA NA
DBSCAN-SWA_159 2231708 : 2234526 3 Catovirus(50.0%) NA NA
DBSCAN-SWA_160 2253164 : 2258438 6 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_161 2264351 : 2270594 7 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_162 2275186 : 2279423 2 Ralstonia_phage(50.0%) NA NA
DBSCAN-SWA_163 2283762 : 2295207 11 Prochlorococcus_phage(25.0%) NA NA
DBSCAN-SWA_164 2301322 : 2307038 9 Golden_Marseillevirus(25.0%) NA NA
DBSCAN-SWA_165 2327120 : 2329088 3 Acanthamoeba_polyphaga_lentillevirus(33.33%) NA NA
DBSCAN-SWA_166 2340462 : 2354186 12 Pandoravirus(33.33%) tRNA NA
DBSCAN-SWA_167 2359783 : 2367400 8 Halovirus(25.0%) NA NA
DBSCAN-SWA_168 2372563 : 2377976 5 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_169 2386961 : 2389601 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_170 2395983 : 2403700 8 Bacillus_phage(40.0%) NA NA
DBSCAN-SWA_171 2412422 : 2413028 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_172 2416739 : 2423534 5 Temperate_phage(33.33%) tRNA NA
DBSCAN-SWA_173 2427466 : 2434918 8 Bacillus_phage(50.0%) tRNA NA
DBSCAN-SWA_174 2439617 : 2445319 5 Tetraselmis_virus(33.33%) NA NA
DBSCAN-SWA_175 2449163 : 2457165 10 Faustovirus(16.67%) NA NA
DBSCAN-SWA_176 2465442 : 2468229 3 Diadromus_pulchellus_ascovirus(50.0%) NA NA
DBSCAN-SWA_177 2476156 : 2485476 9 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_178 2489579 : 2496868 8 Lactobacillus_phage(40.0%) NA NA
DBSCAN-SWA_179 2500100 : 2501576 1 Cyanophage(100.0%) NA NA
DBSCAN-SWA_180 2505665 : 2510669 4 Yellowstone_lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_181 2515916 : 2517218 1 Geobacillus_virus(100.0%) NA NA
DBSCAN-SWA_182 2544334 : 2553523 8 Lactococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_183 2569965 : 2570913 1 Acidianus_two-tailed_virus(100.0%) NA NA
DBSCAN-SWA_184 2618856 : 2619156 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_185 2624085 : 2626689 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_186 2641341 : 2642016 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_187 2647027 : 2650412 5 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_188 2659397 : 2660318 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_189 2673316 : 2674837 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_190 2684926 : 2685583 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_191 2726124 : 2727743 2 Mycobacterium_phage(50.0%) NA NA
DBSCAN-SWA_192 2739269 : 2763700 23 Bacillus_phage(27.27%) NA NA
DBSCAN-SWA_193 2778887 : 2790736 6 Anomala_cuprea_entomopoxvirus(33.33%) NA NA
DBSCAN-SWA_194 2797998 : 2800317 2 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_195 2804406 : 2809307 8 Bacillus_virus(50.0%) tRNA NA
DBSCAN-SWA_196 2815730 : 2818193 1 Enterobacteria_phage(100.0%) protease NA
DBSCAN-SWA_197 2831762 : 2833259 1 Catovirus(100.0%) tRNA NA
DBSCAN-SWA_198 2837022 : 2844228 5 Streptococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_199 2855121 : 2855454 1 Rhodobacter_phage(100.0%) NA NA
DBSCAN-SWA_200 2865092 : 2867473 2 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_201 2870483 : 2872896 3 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_202 2876772 : 2877999 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_203 2890928 : 2899057 7 Hokovirus(25.0%) tRNA NA
DBSCAN-SWA_204 2912644 : 2913349 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_205 2926001 : 2927510 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_206 2930908 : 2941637 17 Listeria_phage(33.33%) tail,holin NA
DBSCAN-SWA_207 2945460 : 2952277 4 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_208 2981132 : 2981569 2 Listeria_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage