CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_021817	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	1	0
NC_021844	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189, complete sequence	4 crisprs	PD-DExK,csa3,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas14j	0	11	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

47490 : 59182

Rhodococcus_phage(12.5%)

transposase,integrase

attL 41296:41309|attR 59216:59229

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
41296:41309	attL	NA	NA	NA	NA
WP_020833575.1\|47490_47997_-	antirestriction protein ArdA	A0A1I9S7Y0	Rhodococcus_phage	1.1e-08	28.9
WP_020833576.1\|48402_49182_-	hypothetical protein	NA	NA	NA	NA
WP_020833577.1\|49236_49656_-	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_020833578.1\|49666_49888_-	hypothetical protein	NA	NA	NA	NA
WP_020833579.1\|49887_50565_-	DNA methylase	A0A2I7RE86	Vibrio_phage	1.5e-29	37.4
WP_020833580.1\|50924_51596_+	SOS response-associated peptidase family protein	A0A2H4J5W2	uncultured_Caudovirales_phage	8.2e-81	61.3
WP_020833581.1\|52198_53473_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	1.3e-156	64.5
WP_020833582.1\|53554_54529_-	ParB/RepB/Spo0J family partition protein	A0A1B0V750	Salmonella_phage	8.8e-84	53.2
WP_000427674.1\|54528_55734_-	AAA family ATPase	A0A077SL49	Escherichia_phage	1.4e-163	69.6
WP_001749329.1\|56422_56677_-	hypothetical protein	NA	NA	NA	NA
WP_000728920.1\|57307_58249_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	1.4e-73	55.0
WP_020833584.1\|58399_59182_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.7e-50	90.2
59216:59229	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_021844

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CRISPR-Cas detection and classification

Crispr_ID: NC_021844_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021844_1

140331-140425

Unclear

Consensus_repeat	Method
ACCGGGTCTACTGGCTCAGGGTCTAC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NC_021844_1

>merge|NC_021844|1|140331-140425|CRISPRCasFinder
ACCGGGTCTACTGGCTCAGGGTCTACTGGATCAGGGTCCACCGGATCGGGAATAACAGGGTCAGGGATAACCGGGTCTACTGGATCAGGGTCTAC

>NC_021844|1|1|140331-140425|CRISPRCasFinder
ACCGGGTCTACTGGCTCAGGGTCTAC	TGGATCAGGGTCCACCGGATCGGGAATAACAGGGTCAGGGATA
ACCGGGTCTACTGGATCAGGGTCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_021844.1\|WP_001065324.1\|135700_136180_+\|membrane-protein	unknown	unknown	unknown
NC_021844.1\|WP_000131285.1\|132659_135386_+\|magnesium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|237914
NC_021844.1\|WP_001082117.1\|135407_135500_+\|protein-MgtR	unknown	unknown	unknown
NC_021844.1\|WP_020838470.1\|137873_138731_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|226233
NC_021844.1\|WP_020838477.1\|153353_155435_-\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
NC_021844.1\|WP_000135058.1\|158264_158540_-\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|188073
NC_021844.1\|WP_000984812.1\|142227_142845_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225360
NC_021844.1\|WP_023193155.1\|130336_131239_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NC_021844.1\|WP_020838473.1\|146242_148561_+\|alpha-xylosidase	unknown	unknown	gnl\|CDD\|236731
NC_021844.1\|WP_001521985.1\|138741_139206_+\|hypothetical-protein	unknown	unknown	unknown
NC_021844.1\|WP_000115428.1\|150493_151885_-\|xanthine/proton-symporter-XanP	unknown	unknown	gnl\|CDD\|273276
NC_021844.1\|WP_000392700.1\|131744_132440_+\|MgtC-family-protein	unknown	unknown	gnl\|CDD\|185283
NC_021844.1\|WP_000749531.1\|129352_130294_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|182167
NC_021844.1\|WP_000462250.1\|152112_153318_+\|sodium/glutamate-symporter	unknown	unknown	gnl\|CDD\|129314
NC_021844.1\|WP_020838475.1\|148663_150373_-\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|282957
NC_021844.1\|WP_001541135.1\|137707_137821_+\|hypothetical-protein	unknown	unknown	unknown
NC_021844.1\|WP_001068433.1\|155440_156130_-\|tRNA-(guanosine(18)-2'-O)-methyltransferase-TrmH	unknown	unknown	gnl\|CDD\|236837
NC_021844.1\|WP_000834259.1\|144848_146231_+\|glycoside-pentoside-hexuronide-family-transporter	unknown	unknown	gnl\|CDD\|183145
NC_021844.1\|WP_000106461.1\|136408_137089_-\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238494
NC_021844.1\|WP_000280481.1\|156134_158246_-\|bifunctional-GTP-diphosphokinase/guanosine-3',5'-bis-pyrophosphate-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236843

Protein	Function_ID	Function_description	E-value
NC_021844.1\|WP_000131285.1\|132659_135386_+\|magnesium-translocating-P-type-ATPase	gnl\|CDD\|237914	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.	0
NC_021844.1\|WP_020838470.1\|137873_138731_+\|transcriptional-regulator	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	1.41293e-40
NC_021844.1\|WP_020838477.1\|153353_155435_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NC_021844.1\|WP_000135058.1\|158264_158540_-\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|188073	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit. This small component of highly purified E. coli RNA polymerase is not required for transcription, but acts in assembly and is present in stochiometric amounts. The trusted cutoff excludes archaeal homologs but captures some organellar sequences. [Transcription, DNA-dependent RNA polymerase].	4.81124e-23
NC_021844.1\|WP_000984812.1\|142227_142845_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225360	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription].	0.00157369
NC_021844.1\|WP_023193155.1\|130336_131239_-\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	4.11447e-51
NC_021844.1\|WP_020838473.1\|146242_148561_+\|alpha-xylosidase	gnl\|CDD\|236731	PRK10658, PRK10658, putative alpha-glucosidase; Provisional.	0
NC_021844.1\|WP_000462250.1\|152112_153318_+\|sodium/glutamate-symporter	gnl\|CDD\|129314	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS). [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_021844.1\|WP_000115428.1\|150493_151885_-\|xanthine/proton-symporter-XanP	gnl\|CDD\|273276	TIGR00801, Uric_acid_permease, uracil-xanthine permease. The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40) Most of the functionally characterized members of the NCS2 family are transporters specific for nucleobases including both purines and pyrimidines. However, two closely related rat members of the family, SVCT1 and SVCT2, localized to different tissues of the body, cotransport L-ascorbate and Na+ with a high degree of specificity and high affinity for the vitamin. The NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39). [Transport and binding proteins, Nucleosides, purines and pyrimidines].	2.19228e-145
NC_021844.1\|WP_000392700.1\|131744_132440_+\|MgtC-family-protein	gnl\|CDD\|185283	PRK15385, PRK15385, MgtC family protein.	2.70737e-155
NC_021844.1\|WP_000749531.1\|129352_130294_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	4.91857e-146
NC_021844.1\|WP_001068433.1\|155440_156130_-\|tRNA-(guanosine(18)-2'-O)-methyltransferase-TrmH	gnl\|CDD\|236837	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional.	1.84412e-177
NC_021844.1\|WP_020838475.1\|148663_150373_-\|AsmA-family-protein	gnl\|CDD\|282957	pfam05170, AsmA, AsmA family. The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.	1.86094e-21
NC_021844.1\|WP_000834259.1\|144848_146231_+\|glycoside-pentoside-hexuronide-family-transporter	gnl\|CDD\|183145	PRK11462, PRK11462, putative transporter; Provisional.	0
NC_021844.1\|WP_000106461.1\|136408_137089_-\|isochorismatase-family-protein	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	3.05871e-58
NC_021844.1\|WP_000280481.1\|156134_158246_-\|bifunctional-GTP-diphosphokinase/guanosine-3',5'-bis-pyrophosphate-3'-pyrophosphohydrolase	gnl\|CDD\|236843	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase.	0

>NC_021844.1|WP_001521985.1|138741_139206_+|hypothetical-protein
MLACLTLLFLGVGLGHLFHLYTEKNRDPEKCTAPVIVFYNNTQANLTLDFMYSLKKRTGVVSISGTYYVDNKMSGVIRRDVSYVWSENKDSTHFISTDINKVTRDETLSDAVIETVLPDFYVYPGKSISYTILTQGHRGFMFTIGKRPIFFCTH
>NC_021844.1|WP_020838470.1|137873_138731_+|transcriptional-regulator
MSCYAATASDYTQWCLLTLSNYVMFWHGNNAMLWIINDNIEFNPEMNRLASLSRPDLNIILTTPASRCLRLLLENAPSVVSQQTFFQKVWEEDGMVVSANTLYQNISIIRRGLRTVGENEDTLIITVPRRGFQIEPSVSIMTIRKDFAQAIEKKGETPPRMSGRWFKHYVPVLWMTGTFAVGILLGTISWQTVPDKDFYDRYTLVETTQGCHFFSRNEDIESGSRFASYKSMILKTGMDCQKYPWVYFPSSSRTPAVTALICQQPYKTRGDTGCVTLFFRGVTHG
>NC_021844.1|WP_001541135.1|137707_137821_+|hypothetical-protein
MIFSPQYKTGDLTNKKTKRTFTPESAIMRKAVSTLTC
>NC_021844.1|WP_000106461.1|136408_137089_-|isochorismatase-family-protein
MSTPANFNGQRPAIDANDAVMLLIDHQSGLFQTVGDMPMPELRARAAALAKIATLCNMPVITTASVPQGPNGPLIPEIHANAPHAQYVARKGEINAWDNADFVQAVKATGRKTLIIAGTITSVCMAFPAISAVAEGYKVFAVIDASGTYSKMAQEITMARVVQAGVVPMDTAAVASELQRTWNREDAAEWADVYTKIFPAYQLLIESYTKAQEVVKNNELLDSQRA
>NC_021844.1|WP_001065324.1|135700_136180_+|membrane-protein
MNNRRGLTAVLATLITFSLSATPVLANPGNGNGGGHGNNAANQGNNGNGHKGNAGQKTEHRKNGGKPDHVESDISYAVARQLAVNLGLTGYQSLPPGIAKNLARGKPLPPGIAKKTVPASMLGQLPYYPGYEWKIVGDNLVLIALSTAVVTAIINGVFD
>NC_021844.1|WP_001082117.1|135407_135500_+|protein-MgtR
MNRSPDKIIALIFLLISLLVLCLALWQIVF
>NC_021844.1|WP_000131285.1|132659_135386_+|magnesium-translocating-P-type-ATPase
MTDMNIENRKLNRPASENDKQHKKVFPIEAEAFHSPEETLARLNSHRQGLTIEEASERLKVYGRNEVAHEQVPPALIQLLQAFNNPFIYVLMALAGVSFITDYWLPLRRGEETDLTGVLIILTMVSLSGLLRFWQEFRTNRAAQALKKMVRTTATVLRRGPGNIGAVQEEIPIEELVPGDVVFLAAGDLVPADVRLLASRDLFISQSILSGESLPVEKYDVMADVAGKDSEQLPDKDKSLLDLGNICLMGTNVTSGRAQAVVVATGSRTWFGSLAKSIVGTRTQTAFDRGVNSVSWLLIRFMLIMVPVVLLINGFSKGDWVEASLFALAVAVGLTPEMLPMIVSSNLAKGAIAMSRRKVIVKRLNAIQNFGAMDVLCTDKTGTLTQDNIFLEHHLDVSGVKSGRVLMLAWLNSSSQSGARNVMDRAILRFGEGRIAPSTKARFIKRDELPFDFVRRRVSVLVEDAQHGDRCLICKGAVEEMMMVATHLREGDRVVALTETRRELLLAKTEDYNAQGFRVLLIATRKLDGSGNNPTLSVEDETELTIEGMLTFLDPPKESAGKAIAALRDNGVAVKVLTGDNPVVTARICLEVGIDTHDILTGTQVEAMSDAELASEVEKRAVFARLTPLQKTRILQALQKNGHTVGFLGDGINDAPALRDADVGISVDSAADIAKESSDIILLEKDLMVLEEGVIKGRETFGNIIKYLNMTASSNFGNVFSVLVASAFIPFLPMLAIHLLIQNLMYDISQLSLPWDKMDKEFLRKPRKWDAKNIGRFMLWIGPTSSIFDITTFALMWYVFAANNVEAQALFQSGWFIEGLLSQTLVVHMLRTQKIPFIQSRATLPVLLTTGLIMAIGIYIPFSPLGAMVGLEPLPLSYFPWLVATLLSYCLVAQGMKRFYIKRFGQWF
>NC_021844.1|WP_000392700.1|131744_132440_+|MgtC-family-protein
MEERMLMFPYILNLLAAMLLGALIGAERQWRQRMAGLRTNALVATGAAVFILSSMTTSPDSPGRIAAQIVSGIGFLGAGVIMREGMNVRGLNTAATLWCSAGIGVLCGLGQFKNALAATIIILCANILLREAAQRINQLPVSAEGEKRYILKVTCNKEDESEVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIHWSIDSQ
>NC_021844.1|WP_023193155.1|130336_131239_-|EamA-family-transporter
MGSTRKGMLNVLIAAVLWGSSGVCAQYIMEQSRMSSQFLTMIRLLFAGLILVTFSFMHGDKIFSILKNRKDALSLLIFSVVGALTVQLTFLLTIEKSNAATATVLQFLSPTIIVAWFALARRTRPSILVLTAILTSLIGTFLLVTHGNPTSLSISSAALFWGIASAFAAAFYTTWPSRLIAQYGTLPVVGWSMSFGGLILLPFYAKEGTHFAVSGSLILAFFYLVVIGTSLTFSLYLKGAQLIGGPKASILSCAEPLSSALLSLLLLGISFTLPDWLGTLLILSSVILISLDSRRRARAA
>NC_021844.1|WP_000749531.1|129352_130294_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MKKSPTSMPHDAVFKTFLRHPDTARDFLNIHLPHSLRIRCDLTTLKLAPDSFIEKNLRAFYSDVLWSLKTCEGDGYIYVVIEHQSTPDAHMAFRLMRYATAAMQRHLDAGHKTLPLVIPMLFYHGAKSPYPFSLCWLDEFDDPALARQLYATAFPLVDITVVPDNEIMQHRRIAMLELVQKHIRQRDLMGLVERLAVLLITGNANDSQLKALFNYLLIQHGSTPRFGKFIREVARRVPQHKERLMTIVDRIRESGRRKGKREGVQQGIQQGIHQGKQEEALRIAHTMLEQGIEREMVLMITGLSDEEIKAKRH
>NC_021844.1|WP_000984812.1|142227_142845_-|helix-turn-helix-transcriptional-regulator
MMRKPSQIVHCISCDLSCQLFPDSAVRVQYCHNAAFSIWPDGNAFLKKGFIEKLLLDRHNHLSSGFIFVDFSFPNLRRFTDLQWADSLANSGMHIVLISDRSLTPLANYWILKSNKIQGIIYSDDDDIVQQQKMHRLFTGRLANSKRGRTLNYTEFILLKRFVSGISIQQIVNIDNIDIKKLYVHKLRLENKLGHSIHKIISNIL
>NC_021844.1|WP_000834259.1|144848_146231_+|glycoside-pentoside-hexuronide-family-transporter
MKSEILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSLNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVKLIGGENKALGFQGGIAALSVVAFLMLAFCFFTTKERVEAPATHTSMREDLRDIWHNDQWRIVGLLTILNILAVCVRGGAMMYYVTWILGKPGVFVAFLTTYCVGNLIGSALAKPLTDWKCKVSVFWWTNALLAVISVAMFFVPMHATIAMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLALGGALIGWMLAGGGYDAAAKTQNSATISIIIALFTIVPAICYLLSAAIAKRYYTLKSPFLKTILEQLAQGAHRNEQEFTHKELQN
>NC_021844.1|WP_020838473.1|146242_148561_+|alpha-xylosidase
MKISDGNWLIQPGLNLIHPVQVFDVEQHGNEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQEGVIGVRMEHFQGALDNGPHYPLNVLQDINVEMQNNAEFAELKSGSLSVRVTKGELWSLDFLRNGVRITGSQLKNNGYVQDTNSGRNYMFERLDLGVGDTVYGLGERFTALVRNGQTVETWNRDGGTSTEQSYKNIPFYITNRGYGVLVNHPQCVSFEIGSEKVSKVQFSVESEYLEYFVIDGPTPKDVLNRYTQFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPVTFPDPKGMIRRLKAKGLKVCVWINPYIGQKPPVFQELKEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPQACEWYADKLKGLVEMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKETVGVEEAVLFARSASVGAQQFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTEQKCRMMPYLYREAARANEAGTPMMRAMMLEFPDDPACDYLDRQYMLGDAVMVAPVFSEAGDVEFYLPEGRWTHLWRNDEVQGSRWHKQQHDFLSLPVYVRDNTLLALGNNSQKPDYAWHEGTAFQLFHLDDGCEAVCEVPATDGSTIFTLQAKRTGNTITVSGEGKARNWTLCLRNITQISGTKCGSYAGSELGVVVTPQGNEVVITL
>NC_021844.1|WP_020838475.1|148663_150373_-|AsmA-family-protein
MKLIGRLLLYVLIACLVVIFGFYFLLQTRWGADHISNWVSENSGYHLTFDVMDHRFSAPSHLLLENVTFGRDGQPATLVAKTVDIGLSIRQLTAPLHVDTILLQDGTLNISVQTAPFPFEADRLQLRNMALNSPGSEWRLSAQRVNGGVMPWRPEAGRVLGNKAQIQLSAGSLTLNDVPATNVLIEGSIDHNQVMLNTVGADMARGALTGVARRNADGSWVVENLRLNDIRLQSDKSLSEFFAPLTTVPSLQIGRLEVTDSSLQGPDWAVTDLDLSLRNLTLRKEDWQSREGKLSMNASEFIYGSLHLLDPILNAEFSPQGVALRQFTTRWEGGMVRTSGAWLRESKALILDDTAIAGLEYTLPENWKQLWMKPLPDWLNSLTLKKFSASRNLVIDIDPAFPWQITALDGYGANLELVQHHQWGVWSGNATLNAAAATFNRVDVRRPSLSLTANASTVNISDLSAFTGKGILEATASVSQLPQRQTQISLNGRGVPMDVLQQWGWPALPIAGDGNIQLTASGNIQADAPLKPTVNGQLHAVNAQKQQITQTMQAGVVSGGEVTSTEPTL
>NC_021844.1|WP_000115428.1|150493_151885_-|xanthine/proton-symporter-XanP
MSVNAIEPADAQPVAQTQNSELIYRLEDRPPLPQTLFAACQHLLAMFVAVITPALLICQALGLPAQDTQHIISMSLFASGVASIIQIKAWGPVGSGLLSIQGTSFNFVAPLIMGGTALKTGGADVPTMMAALFGTLMLASCTEMVLSRILHLARRIITPLVSGVVVMIIGLSLIQVGLTSIGGGYAAMSDNTFGAPKNLLLAGVVLAIIILLNRQRNPYLRVASLVIAMAAGYLLAWFMGMLPENNAPVSQDILMVPTPLYYGLGIDWNLLLPLMLVFMITSLETIGDITATSDVSEQPVSGPLYMKRLKGGVLANGLNSFVSAVFNTFPNSCFGQNNGVIQLTGVASRYVGFVVALMLIVLGLFPAVSGFVQHIPEPVLGGATLVMFGTIAASGVRIVSREPLNRRAILIIALSLAVGLGVSQQPQILQFAPEWVKNLLSSGIAAGGITAIVLNLILPPEKP
>NC_021844.1|WP_000462250.1|152112_153318_+|sodium/glutamate-symporter
MFELDTLSTLVAATLVLLLGRKLVQSVSLLKKYTIPEPVAGGLLVAVALLVLKKSVGWEVNFDMTLRDPLMLAFFATIGLNANLASLRKGGRVVGVFLVVVVGLLLMQNAIGIGMASLLGLDPLMGLIAGSITLSGGHGTGAAWSKLFVERYGFANATEVAMACATFGLVLGGLIGGPVARYLVKHSTTPDGMPDDQAVPTAFEKPDVGRMITSLVLIETIALIAICLTVGKIVAQLLAGTVLELPVFVCVLFVGVILSNGLALVGFYRVFERAVSVLGNVSLSLFLAMALMSLKLWELASLALPMLAILVVQTIFMALYAIFVTWRMMGKNYDAAVLAAGHCGFGLGATPTAIANMQAITDRFGPSHMAFLVVPMVGAFFIDIVNALVIKLYLMLPIFAQ
>NC_021844.1|WP_020838477.1|153353_155435_-|ATP-dependent-DNA-helicase-RecG
MSGRLLDAVPLNSLTGVGAAQSSKLAKIGLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYATVEGEVLNCNITFGGRRMMTCQISDGSGILTMRFFNFNAAMKNSLTTGRRVLAYGEAKRGKYGAEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAIAELLPPELAQGMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSMLALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQRIARHIHERYPQQAQALIERWMPETERYSNA
>NC_021844.1|WP_001068433.1|155440_156130_-|tRNA-(guanosine(18)-2'-O)-methyltransferase-TrmH
MNPKRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAIWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLFEGGYPVLAKVAKRKGLPYPRVNQQGEIDADADWWATMQAAG
>NC_021844.1|WP_000280481.1|156134_158246_-|bifunctional-GTP-diphosphokinase/guanosine-3',5'-bis-pyrophosphate-3'-pyrophosphohydrolase
MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVHDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETSTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLSSGQTVEIITAPGARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLAEIPQENIQRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQQGEAVVPTVAQSNHGHLPIKGADGVLITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCRNIRGYQKEPEKFMAVEWDKETEQEFITEIKVEMFNHQGALANLTAAINTTTSNIQSLNTEEKDGRVYSTFIRLTARDRVHLANIMRKIRVMPDVIKVTRNRN
>NC_021844.1|WP_000135058.1|158264_158540_-|DNA-directed-RNA-polymerase-subunit-omega
MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR

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Crispr_ID: NC_021844_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021844_2

647305-647405

Orphan

Consensus_repeat	Method
GCTTCAGTGGCGAACGTCGTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021844_2

>merge|NC_021844|2|647305-647405|CRISPRCasFinder
GCTTCAGTGGCGAACGTCGTGAAGGCGGTCGTAATTTCAGCGGCGAACGTCGTGAAGGCGGTCGTGGTGATGGTCGTCGCTTCAGCGGCGAACGTCGTGAA

>NC_021844|2|2|647305-647405|CRISPRCasFinder
GCTTCAGTGGCGAACGTCGTGAA	GGCGGTCGTAATTTCAGCGGCGAACGTCGTGAAGGCGGTCGTGGTGATGGTCGTC
GCTTCAGCGGCGAACGTCGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_021844.1\|WP_014343907.1\|651494_652391_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NC_021844.1\|WP_000130438.1\|650309_651317_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182505
NC_021844.1\|WP_000802069.1\|644512_645397_+\|lipoprotein-NlpI	unknown	unknown	gnl\|CDD\|236875
NC_021844.1\|WP_020839006.1\|648923_649454_-\|hypothetical-protein	unknown	unknown	unknown
NC_021844.1\|WP_000908562.1\|654111_654615_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NC_021844.1\|WP_001031038.1\|635834_637337_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NC_021844.1\|WP_000207657.1\|633383_634727_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NC_021844.1\|WP_010723222.1\|645502_645583_+\|protein-YrbN	unknown	unknown	gnl\|CDD\|380282
NC_021844.1\|WP_000532745.1\|649612_650332_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225577
NC_021844.1\|WP_000105461.1\|635354_635807_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NC_021844.1\|WP_000089674.1\|640661_641606_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235333
NC_021844.1\|WP_001670767.1\|642267_644403_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NC_021844.1\|WP_000380404.1\|654956_655400_+\|YhbP-family-protein	unknown	unknown	gnl\|CDD\|235127
NC_021844.1\|WP_000059465.1\|641756_642026_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NC_021844.1\|WP_000421309.1\|652381_653377_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NC_021844.1\|WP_000884721.1\|653593_654118_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NC_021844.1\|WP_000133064.1\|637361_640040_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NC_021844.1\|WP_001040199.1\|640260_640662_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NC_021844.1\|WP_000224385.1\|647618_648863_+\|tryptophan-permease	unknown	unknown	gnl\|CDD\|182492
NC_021844.1\|WP_000928379.1\|654601_654919_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979

Protein	Function_ID	Function_description	E-value
NC_021844.1\|WP_014343907.1\|651494_652391_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NC_021844.1\|WP_000130438.1\|650309_651317_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
NC_021844.1\|WP_000802069.1\|644512_645397_+\|lipoprotein-NlpI	gnl\|CDD\|236875	PRK11189, PRK11189, lipoprotein NlpI; Provisional.	0
NC_021844.1\|WP_000908562.1\|654111_654615_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	7.2703e-63
NC_021844.1\|WP_001031038.1\|635834_637337_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
NC_021844.1\|WP_000207657.1\|633383_634727_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NC_021844.1\|WP_010723222.1\|645502_645583_+\|protein-YrbN	gnl\|CDD\|380282	NF033440, small_YrbN, protein YrbN. YrbN, a small protein of only 26 amino acids, is found in at least these genera: Escherichia, Salmonella, Enterobacter, Klebsiella, and Yersinia. It is known to be expressed in E. coli.	1.66225e-08
NC_021844.1\|WP_000532745.1\|649612_650332_+\|murein-L,D-transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.17265e-108
NC_021844.1\|WP_000105461.1\|635354_635807_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	4.39218e-79
NC_021844.1\|WP_000089674.1\|640661_641606_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235333	PRK05033, truB, tRNA pseudouridine synthase B; Provisional.	0
NC_021844.1\|WP_001670767.1\|642267_644403_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NC_021844.1\|WP_000380404.1\|654956_655400_+\|YhbP-family-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	1.36854e-99
NC_021844.1\|WP_000059465.1\|641756_642026_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	7.70279e-54
NC_021844.1\|WP_000421309.1\|652381_653377_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	3.77757e-116
NC_021844.1\|WP_000884721.1\|653593_654118_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	1.82299e-84
NC_021844.1\|WP_000133064.1\|637361_640040_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NC_021844.1\|WP_001040199.1\|640260_640662_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	9.9646e-53
NC_021844.1\|WP_000224385.1\|647618_648863_+\|tryptophan-permease	gnl\|CDD\|182492	PRK10483, PRK10483, tryptophan permease; Provisional.	0
NC_021844.1\|WP_000928379.1\|654601_654919_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	4.3214e-44

>NC_021844.1|WP_010723222.1|645502_645583_+|protein-YrbN
MKIADQFHDELCRLAAINFEAHVLHG
>NC_021844.1|WP_000802069.1|644512_645397_+|lipoprotein-NlpI
MKPFLRWCFVATALTLAGCSNSAWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPYRSLWLYLVEQKLNEKQAKEALKARFEKSDKEQWGWNIVEFYLGDISEATLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ
>NC_021844.1|WP_001670767.1|642267_644403_+|polyribonucleotide-nucleotidyltransferase
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPEAPASEQAE
>NC_021844.1|WP_000059465.1|641756_642026_+|30S-ribosomal-protein-S15
MSLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR
>NC_021844.1|WP_000089674.1|640661_641606_+|tRNA-pseudouridine(55)-synthase-TruB
MSRPRRRGRDIHGVLLLDKPQGMSSNDVLQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVQERPVTFSAEQLASALETFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEVHCSKGTYIRTIIDDLGEKLGCGAHVTYLRRLTVSKYPVDRMVTLEHLQTLVAQAEQQGVPAAQLLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTTGAPLKGLVRVTEGEDDKFIGMGEIDDEGRVAPRRLVVEYPA
>NC_021844.1|WP_001040199.1|640260_640662_+|30S-ribosome-binding-factor-RbfA
MAKEFGRPQRVAQEMQKEIAIILQREIKDPRLGMMTTVSGVEMSRDLAYAKVFVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTNVVKHDEERRVNPDDSKED
>NC_021844.1|WP_000133064.1|637361_640040_+|translation-initiation-factor-IF-2
MTDVTLKALAAERQVSVDRLVQQFADAGIRKSADDSVSAQEKQTLLAHLNREAVSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERLAAEEQAQREAEEQARREAEEQAKREAQQKAEREAAEQAKREAAEKAKREAAEKDKVSNQQTDDMTKTAQAEKARRENEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTATPEPVEDTSDYHVTTSQHARQAEDENDREVEGGRGRGRNAKAARPAKKGKHAESKADREEARAAVRGGKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETDNGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAGVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIESESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGTIKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDMIEVFEIIEIQRTIA
>NC_021844.1|WP_001031038.1|635834_637337_+|transcription-termination/antitermination-protein-NusA
MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTDEKAGELIMAARNICWFGDEA
>NC_021844.1|WP_000105461.1|635354_635807_+|ribosome-maturation-factor-RimP
MSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF
>NC_021844.1|WP_000207657.1|633383_634727_-|argininosuccinate-synthase
MTTILKHLPAGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEFLNSSVKIVNPIMGVKFWDESVKIPAEVVTVRFEQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHSHGRQLGKLLYQGRWFDSQALMLRDGLQRWVASQITGEVTLELRRGNDYSILNTVSDNLTYKPERLTMEKGDSVFSPDDRIGQLTMRNLDITDTREKLFGYAKAGLLTASSATGLPQVENLENKGK
>NC_021844.1|WP_000224385.1|647618_648863_+|tryptophan-permease
MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALVFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFAFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESHASYTPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPRTIVKCLIYGTLLALALYSVWLLGTMGNIPRPEFIGIAQKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAMGRFKTALLTFLPPMIGGLLYPNGFLYAIGYAGLAATIWAAIVPALLARKSRERFGSPKFRVWGGKPMIALILVFGVGNAVIHILSSFNLLPVYQ
>NC_021844.1|WP_020839006.1|648923_649454_-|hypothetical-protein
MSEPASFFLHAHITESNLKKFFHSPATNIKDYDDWLPWFTEEQRLYGDPAKMLNNLATCNSGESEKNIYAEHINFNKETQIVTMDHIFLSESYEIFMPLMACVRGIEKFITPGENNFALIYYYWWGSEIAIALEFDANGSRITANPKAENLTIADAFFDEHGEALAEELYNKQGVI
>NC_021844.1|WP_000532745.1|649612_650332_+|murein-L,D-transpeptidase
MGRKGLLAIVLLSLFIAFILKFFWLTPYDEDVYLPVEKPVASSLKIIHPGDQLFIRILKAEDKLELWASANNKPYKLYKTWTICAWSGGLGPKHKQGDGKSPEGFYATNKGLLNPNSRYHLAFNIGYPNAYDRANGYTGDFIMVHGNCVSAGCYAMTDAGIEEIYQLVAQALNSGQKSVPVHIFPFTMNDENMRQAQAWPEYNFWRMLKPGYDYFEKNRRLPTITVENRRYKISPTTLP
>NC_021844.1|WP_000130438.1|650309_651317_-|LLM-class-flavin-dependent-oxidoreductase
MTDKTIPFSVLDLAPIPEGSSAKEAFTHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQPTMRALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEQIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRTQFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIENMETFWSPSEQYGVQQALSMSLVGDKAKVRHGLESILRETQADEIMVNGQIFDHQARLHSFDLAMDVKEELLG
>NC_021844.1|WP_014343907.1|651494_652391_-|U32-family-peptidase
MAVRGAMKYSLGPVLYYWPKETLEDFYQQAAKSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAASGKQVVLSTLALVQASSELSELKRYVDNGDFLLEASDLGVVNLCAERKLPFVAGHALNCYNAVTLRRLLKEGMVRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRDVLSQENQQVFVLNGIQTMSGYVYNLGNELTSMQGLVDIVRLSPLGTETFAMLDAFRANENGGAPLPLAAHSDCNGYWKRLAGLELQA
>NC_021844.1|WP_000421309.1|652381_653377_-|U32-family-peptidase
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAIRFYHRNFDVHRVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNDVLIDRYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKAAPQNFVPQRDWMETLGAMSEGTQTTLGAYHRKWQ
>NC_021844.1|WP_000884721.1|653593_654118_+|SCP2-domain-containing-protein
MLDKLRSRLVHAGPSLMSVPVKLTPFALKRQVLEQVLSWQFRQALADGELEFLEGRWLSIHVRDIDLKWYTTVENEKLIVSQQADADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRVMLLQLADFVEAGMKNSPETKQTSVGEPC
>NC_021844.1|WP_000908562.1|654111_654615_+|N-acetyltransferase
MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGLVATDDEGQVVGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNEFGYAAVVTLGDPALYSRFGFELAAHYDLHCRWPGTESAFQVHRLAEDALEGVTGLVEYHDHFNRF
>NC_021844.1|WP_000928379.1|654601_654919_-|GIY-YIG-nuclease-family-protein
MLMATMTPWYLYLIRTADNALYTGITTDVARRYRQHQTGKGAKALRGKGELTLAFAAQVGDRSLALRIEYRIKQLTKRQKERLVTEREAFEALLSSLQTPVLKND
>NC_021844.1|WP_000380404.1|654956_655400_+|YhbP-family-protein
MDTLTAIGRWLAKQHVVTWCVHHEGELWCANAFYLFDAQNVALYLLTDDKTRHAQMSGACAPVAGTVNGQPKTVARIRGVQFKGEIRRLEGQESDAARKAYLRRFPVARVLPAPVWEIRLDEIKFTDNTLGFGKKLHWLRDSRAQQA

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Crispr_ID: NC_021844_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021844_3

1046724-1047424

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

11 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NC_021844_3

>merge|NC_021844|3|1046724-1047424|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTTGACGGTGACGTCAGTGCCGAAGGCGAAATAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGCTTACGCTATTTACGACGTTATTGAGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCCGATAGCGACGCTTCTGTAGTCACTGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGCGTGTTCCCCGCGCCAGCGGGGATAAGCCGCGTCACTTTCTGACATTTTATTCAGTTCGTTAGTGTTCCCCGTGCCAGCGGGGATAAACCGTCATTTCTGGACGGGGCTGTGTGACGAATACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGTCCAATTAACCCAAACTTTGCGCGCTTAATATGTTCCCCGCGCTAGCGGGGATAAACCGGGATATGTGAAGTTCAGGTAGCCCATTACGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGATCGAGAGTGCGAAGAGGCAGAACGGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGACGAGTTCTGGAAATGGTTAGCTGATAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTCATCGGCAGCGTCACGCAATATGAAGATGTGTTCCCCGCGCCAACAAGGATAGCCGT

>NC_021844|3|1|1046724-1047363|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACGGTGACGTCAGTGCCGAAGGCGAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCTTACGCTATTTACGACGTTATTGAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCGATAGCGACGCTTCTGTAGTCACTGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC
GTGTTCCCCGCGCCAGCGGGGATAAGCCG	CGTCACTTTCTGACATTTTATTCAGTTCGTTA
GTGTTCCCCGTGCCAGCGGGGATAAACCG	TCATTTCTGGACGGGGCTGTGTGACGAATACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCCAATTAACCCAAACTTTGCGCGCTTAAT
ATGTTCCCCGCGCTAGCGGGGATAAACCG	GGATATGTGAAGTTCAGGTAGCCCATTACGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NC_021844|3|3|1046724-1047424|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACGGTGACGTCAGTGCCGAAGGCGAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCTTACGCTATTTACGACGTTATTGAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCGATAGCGACGCTTCTGTAGTCACTGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC
GTGTTCCCCGCGCCAGCGGGGATAAGCCG	CGTCACTTTCTGACATTTTATTCAGTTCGTTA
GTGTTCCCCGTGCCAGCGGGGATAAACCG	TCATTTCTGGACGGGGCTGTGTGACGAATACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCCAATTAACCCAAACTTTGCGCGCTTAAT
ATGTTCCCCGCGCTAGCGGGGATAAACCG	GGATATGTGAAGTTCAGGTAGCCCATTACGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NC_021844|3|1|1046724-1047424|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACGGTGACGTCAGTGCCGAAGGCGAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCTTACGCTATTTACGACGTTATTGAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCGATAGCGACGCTTCTGTAGTCACTGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC
GTGTTCCCCGCGCCAGCGGGGATAAGCCG	CGTCACTTTCTGACATTTTATTCAGTTCGTTA
GTGTTCCCCGTGCCAGCGGGGATAAACCG	TCATTTCTGGACGGGGCTGTGTGACGAATACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCCAATTAACCCAAACTTTGCGCGCTTAAT
ATGTTCCCCGCGCTAGCGGGGATAAACCG	GGATATGTGAAGTTCAGGTAGCCCATTACGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_021844.1\|WP_000210863.1\|1042601_1044239_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NC_021844.1\|WP_001199961.1\|1045755_1046427_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NC_021844.1\|WP_000842511.1\|1040377_1040965_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169
NC_021844.1\|WP_020839107.1\|1047521_1048319_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NC_021844.1\|WP_020839109.1\|1050991_1052704_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NC_021844.1\|WP_020839111.1\|1054998_1057662_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_021844.1\|WP_020839103.1\|1035801_1036272_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
NC_021844.1\|WP_077909651.1\|1037598_1040298_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
NC_021844.1\|WP_020839113.1\|1059229_1059778_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_021844.1\|WP_020839108.1\|1049192_1050992_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NC_021844.1\|WP_020839110.1\|1053601_1054555_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NC_021844.1\|WP_020839104.1\|1036286_1036769_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
NC_021844.1\|WP_001591403.1\|1059791_1060850_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NC_021844.1\|WP_020839105.1\|1036812_1037586_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177
NC_021844.1\|WP_001645986.1\|1052779_1053514_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_021844.1\|WP_000210451.1\|1041573_1042374_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NC_021844.1\|WP_001079648.1\|1035268_1035805_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NC_021844.1\|WP_000036734.1\|1044321_1045620_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_021844.1\|WP_000108313.1\|1048406_1048769_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NC_021844.1\|WP_020839112.1\|1057673_1059233_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192

Protein	Function_ID	Function_description	E-value
NC_021844.1\|WP_000210863.1\|1042601_1044239_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_021844.1\|WP_001199961.1\|1045755_1046427_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NC_021844.1\|WP_000842511.1\|1040377_1040965_-\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	6.76622e-100
NC_021844.1\|WP_020839107.1\|1047521_1048319_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	6.94953e-101
NC_021844.1\|WP_020839109.1\|1050991_1052704_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NC_021844.1\|WP_020839111.1\|1054998_1057662_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NC_021844.1\|WP_020839103.1\|1035801_1036272_-\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	4.46584e-100
NC_021844.1\|WP_077909651.1\|1037598_1040298_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
NC_021844.1\|WP_020839113.1\|1059229_1059778_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	5.28868e-33
NC_021844.1\|WP_020839108.1\|1049192_1050992_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NC_021844.1\|WP_020839110.1\|1053601_1054555_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NC_021844.1\|WP_020839104.1\|1036286_1036769_-\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	1.30857e-99
NC_021844.1\|WP_001591403.1\|1059791_1060850_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.5515e-136
NC_021844.1\|WP_020839105.1\|1036812_1037586_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NC_021844.1\|WP_001645986.1\|1052779_1053514_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.50033e-138
NC_021844.1\|WP_000210451.1\|1041573_1042374_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NC_021844.1\|WP_001079648.1\|1035268_1035805_-\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	3.25472e-123
NC_021844.1\|WP_000036734.1\|1044321_1045620_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_021844.1\|WP_000108313.1\|1048406_1048769_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NC_021844.1\|WP_020839112.1\|1057673_1059233_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	1.08811e-170

>NC_021844.1|WP_001199961.1|1045755_1046427_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NC_021844.1|WP_000036734.1|1044321_1045620_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NC_021844.1|WP_000210863.1|1042601_1044239_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NC_021844.1|WP_000210451.1|1041573_1042374_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NC_021844.1|WP_000842511.1|1040377_1040965_-|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDSILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NC_021844.1|WP_077909651.1|1037598_1040298_-|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSLSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVISDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGMFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPSTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>NC_021844.1|WP_020839105.1|1036812_1037586_-|fimbria/pilus-periplasmic-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAAGLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKGNETASGFKNLLIAPREKVTSPIKGASLGSSPVVSYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NC_021844.1|WP_020839104.1|1036286_1036769_-|fimbrial-protein
MLVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>NC_021844.1|WP_020839103.1|1035801_1036272_-|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSAKALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NC_021844.1|WP_001079648.1|1035268_1035805_-|fimbrial-protein
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETVAQQRLDINAVQGTAFMLKEGITTINLQARLQKYAGEDVMPGEFKGSATVSFEYQ
>NC_021844.1|WP_020839107.1|1047521_1048319_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKVRPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTMWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NC_021844.1|WP_000108313.1|1048406_1048769_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NC_021844.1|WP_020839108.1|1049192_1050992_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGSVNDIHTSPYTKDAPLAATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRSFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NC_021844.1|WP_020839109.1|1050991_1052704_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFSADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NC_021844.1|WP_001645986.1|1052779_1053514_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NC_021844.1|WP_020839110.1|1053601_1054555_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMDVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NC_021844.1|WP_020839111.1|1054998_1057662_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKVHCDRAFAYQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDCAACGYSANEGLIGMMGE
>NC_021844.1|WP_020839112.1|1057673_1059233_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTLWLPVRFKDGSTGKLAPVNLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAQLEHAFQFGAETPSFMQDFEELPDNKITIASLLPETPGIQTTELNTDHFIKRGVMECFCPHCAALALFSMQLNAPSGGQGYRTGLRGGGPLTTLIELQEYQGERQTPLWRKLWLNVMPQDAADLPLPVVYDAAVFPWLAATRTSEPPAHTITTDEQVNKLQAYWGMPRRIRLDFATIRQGVCNICGNNSDELLIQMLVKNYGVNYDRWRHPLTPHRLQIKNSKGFEPVITQPGGLLWRDWLGLSQENPTEKNTEYPAQVIKVFNARELRNIKVGLWGFGADFKKMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRSALKEAWFANAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NC_021844.1|WP_020839113.1|1059229_1059778_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKADWHVTALAITAILAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSRLSAVKNPDELLRHLRRAVQLLDGSVNLISLADDIFRWCQEQDDLLNHHRRQQRPTEFLRIRWALEYYQAGDNEQD
>NC_021844.1|WP_001591403.1|1059791_1060850_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILIESGIDAKKAVEYVKNIANYFGKVKAEKKPKDELTNAETGQLVHISPAEFEGVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLAEKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMKDVLDFICA

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Crispr_ID: NC_021844_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021844_4

1063546-1064185

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

10 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_021844_4

>merge|NC_021844|4|1063546-1064185|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTATAATTGGCGTCCATATATCTGGATATTTACGTGTTCCCCGCGCCAGCGGGGATAAACCGATTGTTTCCCGCTTGCGCTTGCATCGCCGGATGTGTTCCCCGCGCCAGCGGGGATAAACCGCTTACTATCAGCTCGCGTGCTGTTTGCAGGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGATGCCAAACTGGTCAAGCTGGCGATTATCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAAATAAACTCCTTGAGCAGCGGCAAGCAACGTGTTCCCCGCGCCAGCGGGGATAAACCGTGTGAACGTCGGATAAATACCGATTCCGCCTGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGTTTCTTGTGACGCTTCTATTCAGGACAAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGATCGCGCAAATCGCTGCGAGTATTCAGGGTGTTCCCCGCGTCAGCGGGGATAAACCGTCCACGTCGCCCGCCATCAGGTTCGCCAGCTCGTGTTCCCCGCGTCAGCCGGGAGAAACCGAACTGGTACACCCGCCTGACGTTTGTTCAGCTGTGTTCCCCGCGTCAGCGGGGATAAACAC

>NC_021844|4|2|1063546-1064002|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TATAATTGGCGTCCATATATCTGGATATTTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATGCCAAACTGGTCAAGCTGGCGATTATCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTGAACGTCGGATAAATACCGATTCCGCCTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTTCTTGTGACGCTTCTATTCAGGACAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NC_021844|4|4|1063546-1064185|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TATAATTGGCGTCCATATATCTGGATATTTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATGCCAAACTGGTCAAGCTGGCGATTATCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTGAACGTCGGATAAATACCGATTCCGCCTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTTCTTGTGACGCTTCTATTCAGGACAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGATCGCGCAAATCGCTGCGAGTATTCAGG
GTGTTCCCCGCGTCAGCGGGGATAAACCG	TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC
GTGTTCCCCGCGTCAGCCGGGAGAAACCG	AACTGGTACACCCGCCTGACGTTTGTTCAGCT
GTGTTCCCCGCGTCAGCGGGGATAAACAC

>NC_021844|4|2|1063546-1064185|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TATAATTGGCGTCCATATATCTGGATATTTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATGCCAAACTGGTCAAGCTGGCGATTATCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTGAACGTCGGATAAATACCGATTCCGCCTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTTCTTGTGACGCTTCTATTCAGGACAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGATCGCGCAAATCGCTGCGAGTATTCAGG
GTGTTCCCCGCGTCAGCGGGGATAAACCG	TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC
GTGTTCCCCGCGTCAGCCGGGAGAAACCG	AACTGGTACACCCGCCTGACGTTTGTTCAGCT
GTGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_021844.1\|WP_001219245.1\|1070050_1070530_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NC_021844.1\|WP_020839118.1\|1069340_1070051_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NC_021844.1\|WP_001518648.1\|1063155_1063449_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NC_021844.1\|WP_020839112.1\|1057673_1059233_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NC_021844.1\|WP_020839117.1\|1067840_1068446_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NC_021844.1\|WP_020839111.1\|1054998_1057662_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_021844.1\|WP_000517480.1\|1069010_1069322_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NC_021844.1\|WP_020839115.1\|1061588_1062239_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NC_021844.1\|WP_001221538.1\|1071556_1072318_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_021844.1\|WP_020839110.1\|1053601_1054555_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NC_021844.1\|WP_001645986.1\|1052779_1053514_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_021844.1\|WP_001092269.1\|1066414_1067854_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NC_021844.1\|WP_001537530.1\|1068496_1068820_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NC_021844.1\|WP_020839114.1\|1060860_1061607_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_021844.1\|WP_001591403.1\|1059791_1060850_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NC_021844.1\|WP_020839116.1\|1062235_1063156_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_021844.1\|WP_000490481.1\|1064199_1065246_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NC_021844.1\|WP_000372384.1\|1065496_1066405_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NC_021844.1\|WP_020839113.1\|1059229_1059778_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_021844.1\|WP_000134246.1\|1070526_1071576_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884

Protein	Function_ID	Function_description	E-value
NC_021844.1\|WP_001219245.1\|1070050_1070530_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
NC_021844.1\|WP_020839118.1\|1069340_1070051_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.27466e-119
NC_021844.1\|WP_001518648.1\|1063155_1063449_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NC_021844.1\|WP_020839112.1\|1057673_1059233_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	1.08811e-170
NC_021844.1\|WP_020839117.1\|1067840_1068446_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.56869e-145
NC_021844.1\|WP_020839111.1\|1054998_1057662_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NC_021844.1\|WP_000517480.1\|1069010_1069322_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NC_021844.1\|WP_020839115.1\|1061588_1062239_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	7.28128e-76
NC_021844.1\|WP_001221538.1\|1071556_1072318_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NC_021844.1\|WP_020839110.1\|1053601_1054555_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NC_021844.1\|WP_001645986.1\|1052779_1053514_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.50033e-138
NC_021844.1\|WP_001092269.1\|1066414_1067854_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NC_021844.1\|WP_001537530.1\|1068496_1068820_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
NC_021844.1\|WP_020839114.1\|1060860_1061607_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.10155e-49
NC_021844.1\|WP_001591403.1\|1059791_1060850_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.5515e-136
NC_021844.1\|WP_020839116.1\|1062235_1063156_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.39311e-157
NC_021844.1\|WP_000490481.1\|1064199_1065246_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NC_021844.1\|WP_000372384.1\|1065496_1066405_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NC_021844.1\|WP_020839113.1\|1059229_1059778_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	5.28868e-33
NC_021844.1\|WP_000134246.1\|1070526_1071576_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0

>NC_021844.1|WP_001518648.1|1063155_1063449_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NC_021844.1|WP_020839116.1|1062235_1063156_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIKPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NC_021844.1|WP_020839115.1|1061588_1062239_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPMLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLRETSVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>NC_021844.1|WP_020839114.1|1060860_1061607_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHDLPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGSAADVLREAYRWYQDQFNALKLPLPGLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NC_021844.1|WP_001591403.1|1059791_1060850_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILIESGIDAKKAVEYVKNIANYFGKVKAEKKPKDELTNAETGQLVHISPAEFEGVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLAEKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMKDVLDFICA
>NC_021844.1|WP_020839113.1|1059229_1059778_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKADWHVTALAITAILAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSRLSAVKNPDELLRHLRRAVQLLDGSVNLISLADDIFRWCQEQDDLLNHHRRQQRPTEFLRIRWALEYYQAGDNEQD
>NC_021844.1|WP_020839112.1|1057673_1059233_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTLWLPVRFKDGSTGKLAPVNLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAQLEHAFQFGAETPSFMQDFEELPDNKITIASLLPETPGIQTTELNTDHFIKRGVMECFCPHCAALALFSMQLNAPSGGQGYRTGLRGGGPLTTLIELQEYQGERQTPLWRKLWLNVMPQDAADLPLPVVYDAAVFPWLAATRTSEPPAHTITTDEQVNKLQAYWGMPRRIRLDFATIRQGVCNICGNNSDELLIQMLVKNYGVNYDRWRHPLTPHRLQIKNSKGFEPVITQPGGLLWRDWLGLSQENPTEKNTEYPAQVIKVFNARELRNIKVGLWGFGADFKKMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRSALKEAWFANAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NC_021844.1|WP_020839111.1|1054998_1057662_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKVHCDRAFAYQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDCAACGYSANEGLIGMMGE
>NC_021844.1|WP_020839110.1|1053601_1054555_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMDVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NC_021844.1|WP_001645986.1|1052779_1053514_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NC_021844.1|WP_000490481.1|1064199_1065246_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NC_021844.1|WP_000372384.1|1065496_1066405_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NC_021844.1|WP_001092269.1|1066414_1067854_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NC_021844.1|WP_020839117.1|1067840_1068446_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPLVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NC_021844.1|WP_001537530.1|1068496_1068820_+|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NC_021844.1|WP_000517480.1|1069010_1069322_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NC_021844.1|WP_020839118.1|1069340_1070051_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NC_021844.1|WP_001219245.1|1070050_1070530_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NC_021844.1|WP_000134246.1|1070526_1071576_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NC_021844.1|WP_001221538.1|1071556_1072318_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_021844_3	3.8\|1047181\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1047181-1047212	32	NZ_CP034699	Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence	177960-177991	1	0.969
NC_021844_3	3.8\|1047181\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1047181-1047212	32	NZ_CP034710	Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence	67131-67162	1	0.969
NC_021844_4	4.9\|1064064\|32\|NC_021844\|CRISPRCasFinder,CRT	1064064-1064095	32	NZ_CP041350	Komagataeibacter xylinus strain CGMCC 17276 plasmid pB, complete sequence	279-310	5	0.844
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	850282-850313	6	0.812
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	887728-887759	6	0.812
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	856045-856076	6	0.812
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	835457-835488	6	0.812
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	953948-953979	6	0.812
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	431895-431926	6	0.812
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	843687-843718	6	0.812
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	833486-833517	6	0.812
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	457962-457993	6	0.812
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1502459-1502490	6	0.812
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	1188725-1188756	6	0.812
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	1094940-1094971	6	0.812
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	574071-574102	6	0.812
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	758103-758134	6	0.812
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	92938-92969	6	0.812
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1622461-1622492	6	0.812
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	174090-174121	6	0.812
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	996227-996258	6	0.812
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	856529-856560	6	0.812
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1026857-1026888	6	0.812
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	801217-801248	6	0.812
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	887731-887762	6	0.812
NC_021844_4	4.9\|1064064\|32\|NC_021844\|CRISPRCasFinder,CRT	1064064-1064095	32	NZ_CP014675	Kozakia baliensis strain DSM 14400 plasmid pKB14400_1, complete sequence	171734-171765	6	0.812
NC_021844_4	4.9\|1064064\|32\|NC_021844\|CRISPRCasFinder,CRT	1064064-1064095	32	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	562790-562821	6	0.812
NC_021844_4	4.9\|1064064\|32\|NC_021844\|CRISPRCasFinder,CRT	1064064-1064095	32	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	243956-243987	6	0.812
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NZ_CP030829	Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence	360377-360408	7	0.781
NC_021844_4	4.4\|1063758\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1063758-1063789	32	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	1108376-1108407	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1129847-1129878	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1783651-1783682	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	2012965-2012996	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1726765-1726796	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1171924-1171955	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1042739-1042770	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1783787-1783818	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	1726762-1726793	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	236953-236984	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	148007-148038	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1726763-1726794	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1108332-1108363	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1041836-1041867	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1074580-1074611	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1074569-1074600	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1783312-1783343	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1042731-1042762	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1042087-1042118	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1042722-1042753	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1783257-1783288	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	370077-370108	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	235444-235475	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	350195-350226	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1129950-1129981	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1129944-1129975	7	0.781
NC_021844_4	4.8\|1064003\|32\|NC_021844\|CRISPRCasFinder,CRT	1064003-1064034	32	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1129927-1129958	7	0.781
NC_021844_4	4.9\|1064064\|32\|NC_021844\|CRISPRCasFinder,CRT	1064064-1064095	32	NZ_CP041350	Komagataeibacter xylinus strain CGMCC 17276 plasmid pB, complete sequence	180897-180928	7	0.781
NC_021844_4	4.9\|1064064\|32\|NC_021844\|CRISPRCasFinder,CRT	1064064-1064095	32	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	549969-550000	7	0.781
NC_021844_4	4.9\|1064064\|32\|NC_021844\|CRISPRCasFinder,CRT	1064064-1064095	32	AP021850	Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome	10007-10038	7	0.781
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	43093-43124	8	0.75
NC_021844_3	3.1\|1046753\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046753-1046784	32	NZ_CP053442	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence	152052-152083	8	0.75
NC_021844_3	3.5\|1046998\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046998-1047029	32	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	135469-135500	8	0.75
NC_021844_3	3.5\|1046998\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046998-1047029	32	NZ_CP031801	Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence	11654-11685	8	0.75
NC_021844_4	4.1\|1063575\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1063575-1063606	32	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	101688-101719	8	0.75
NC_021844_4	4.4\|1063758\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1063758-1063789	32	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	633490-633521	8	0.75
NC_021844_4	4.4\|1063758\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1063758-1063789	32	MN116494	Klebsiella phage vB_KpnP_Bp5, complete genome	14650-14681	8	0.75
NC_021844_4	4.5\|1063819\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1063819-1063850	32	JQ680367	Unidentified phage clone 2203_scaffold802 genomic sequence	371-402	8	0.75
NC_021844_4	4.9\|1064064\|32\|NC_021844\|CRISPRCasFinder,CRT	1064064-1064095	32	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	324002-324033	8	0.75
NC_021844_4	4.9\|1064064\|32\|NC_021844\|CRISPRCasFinder,CRT	1064064-1064095	32	NZ_CP022369	Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence	315007-315038	8	0.75
NC_021844_4	4.9\|1064064\|32\|NC_021844\|CRISPRCasFinder,CRT	1064064-1064095	32	NZ_CP032342	Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence	285481-285512	8	0.75
NC_021844_4	4.9\|1064064\|32\|NC_021844\|CRISPRCasFinder,CRT	1064064-1064095	32	NZ_CP033321	Azospirillum brasilense strain Cd plasmid p3, complete sequence	122710-122741	8	0.75
NC_021844_4	4.9\|1064064\|32\|NC_021844\|CRISPRCasFinder,CRT	1064064-1064095	32	NZ_CP033315	Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence	412688-412719	8	0.75
NC_021844_4	4.9\|1064064\|32\|NC_021844\|CRISPRCasFinder,CRT	1064064-1064095	32	MF150911	Ralstonia phage DU_RP_II, complete genome	2434-2465	8	0.75
NC_021844_4	4.9\|1064064\|32\|NC_021844\|CRISPRCasFinder,CRT	1064064-1064095	32	MN996301	Ralstonia phage RpY1, complete genome	18901-18932	8	0.75
NC_021844_4	4.9\|1064064\|32\|NC_021844\|CRISPRCasFinder,CRT	1064064-1064095	32	NC_011273	Mycobacterium phage Myrna, complete genome	58326-58357	8	0.75
NC_021844_3	3.3\|1046875\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1046875-1046906	32	NZ_CP051686	Duganella sp. GN2-R2 plasmid unnamed1, complete sequence	45237-45268	9	0.719
NC_021844_4	4.4\|1063758\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1063758-1063789	32	MN586053	Arthrobacter phage BeatusComedenti, complete genome	46641-46672	9	0.719
NC_021844_4	4.4\|1063758\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1063758-1063789	32	KT964103	Klebsiella phage vB_KpnP_KpV41, complete genome	15489-15520	9	0.719
NC_021844_4	4.4\|1063758\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1063758-1063789	32	NC_031254	Arthrobacter phage Kitkat, complete genome	46736-46767	9	0.719
NC_021844_4	4.9\|1064064\|32\|NC_021844\|CRISPRCasFinder,CRT	1064064-1064095	32	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	85269-85300	9	0.719
NC_021844_4	4.9\|1064064\|32\|NC_021844\|CRISPRCasFinder,CRT	1064064-1064095	32	NZ_CP022369	Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence	181739-181770	9	0.719
NC_021844_4	4.9\|1064064\|32\|NC_021844\|CRISPRCasFinder,CRT	1064064-1064095	32	NZ_CP015040	Rhodovulum sp. P5 plasmid pRGUI01, complete sequence	68741-68772	9	0.719
NC_021844_4	4.9\|1064064\|32\|NC_021844\|CRISPRCasFinder,CRT	1064064-1064095	32	NZ_CP016619	Microvirga ossetica strain V5/3m plasmid unnamed2, complete sequence	942394-942425	9	0.719
NC_021844_4	4.9\|1064064\|32\|NC_021844\|CRISPRCasFinder,CRT	1064064-1064095	32	MH588547	Caulobacter phage CcrSC, complete genome	48931-48962	9	0.719
NC_021844_3	3.9\|1047242\|32\|NC_021844\|PILER-CR,CRISPRCasFinder,CRT	1047242-1047273	32	NZ_CP044072	Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence	99817-99848	10	0.688
NC_021844_3	3.11\|1047364\|32\|NC_021844\|CRISPRCasFinder,CRT	1047364-1047395	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688

1. spacer 3.8|1047181|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

2. spacer 3.8|1047181|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

3. spacer 4.9|1064064|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP041350 (Komagataeibacter xylinus strain CGMCC 17276 plasmid pB, complete sequence) position: , mismatch: 5, identity: 0.844

tccacgtcgcccgccatcaggttc-gccagctc	CRISPR spacer
accacgttacccgccatcaggttcggcccgct-	Protospacer
 ******..*************** *** ***

4. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

5. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

6. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

7. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

8. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

9. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

10. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

11. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

12. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

13. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

14. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

15. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

16. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

17. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

18. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

19. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

20. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

21. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

22. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

23. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

24. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

25. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

26. spacer 4.9|1064064|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP014675 (Kozakia baliensis strain DSM 14400 plasmid pKB14400_1, complete sequence) position: , mismatch: 6, identity: 0.812

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
accacgttgcccgccatcaggttcggccccgc	Protospacer
 ******.***************** *  * *

27. spacer 4.9|1064064|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 6, identity: 0.812

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
ttcagtgcgcccgccatcaggctcgccagcac	Protospacer
*.**   **************.******** *

28. spacer 4.9|1064064|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 6, identity: 0.812

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
ttcagtgcgcccgccatcaggctcgccagcac	Protospacer
*.**   **************.******** *

29. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030829 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence) position: , mismatch: 7, identity: 0.781

ttgacggtgacgtcagtgccgaaggcgaaata	CRISPR spacer
tcttcggtgacgacattgccgaaggcgacgta	Protospacer
*.  ******** ** ************ .**

30. spacer 4.4|1063758|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 7, identity: 0.781

gatgccaa-actggtcaagctggcgattatcaa	CRISPR spacer
-gcgccggtgctggtcgagctggcgattatcaa	Protospacer
 ..***.. .******.****************

31. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

32. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

33. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

34. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

35. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

36. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

37. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

38. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

39. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

40. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

41. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

42. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

43. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

44. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

45. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

46. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

47. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

48. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

49. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

50. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

51. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

52. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

53. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

54. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

55. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

56. spacer 4.8|1064003|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

57. spacer 4.9|1064064|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP041350 (Komagataeibacter xylinus strain CGMCC 17276 plasmid pB, complete sequence) position: , mismatch: 7, identity: 0.781

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
accacgttacccgccatcaggttcggccccgc	Protospacer
 ******..**************** *  * *

58. spacer 4.9|1064064|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 7, identity: 0.781

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tcgagaccgcccgccatcaggtgctccagcgc	Protospacer
** * ..*************** * ***** *

59. spacer 4.9|1064064|32|NC_021844|CRISPRCasFinder,CRT matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 7, identity: 0.781

tccacgt---cgcccgccatcaggttcgccagctc	CRISPR spacer
---aggtgcccgcccgcgatcaggtacgccagcgc	Protospacer
   * **   ******* ******* ******* *

60. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

ttgacggtgacgtcagtgccgaaggcgaaata	CRISPR spacer
tcgacggtgacgtccgtgacgaaggtgttcga	Protospacer
*.************ *** ******.*    *

61. spacer 3.1|1046753|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053442 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence) position: , mismatch: 8, identity: 0.75

ttgacggtgacgtcagtgccgaaggcgaaata	CRISPR spacer
ttctggtggacgtccgtgccgaaggcgcaatg	Protospacer
**   *  ****** ************ ***.

62. spacer 3.5|1046998|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
attcactatcagacattttattcagttctgcc	Protospacer
  ***** ** *****************  .

63. spacer 3.5|1046998|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
cgcgcgtgtctgacattgtattcagttcattt	Protospacer
**.   * ********* **********.**

64. spacer 4.1|1063575|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

tataattggcgtccatatatctggatatttac	CRISPR spacer
attatctttcgtctaaatatctggatatttac	Protospacer
  ** .*  ****.* ****************

65. spacer 4.4|1063758|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

gatgccaaactggtcaagctggcgattatcaa--	CRISPR spacer
gatgccaagcaggtcaagctggc--tcaccgccg	Protospacer
********.* ************  *.*.*.

66. spacer 4.4|1063758|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to MN116494 (Klebsiella phage vB_KpnP_Bp5, complete genome) position: , mismatch: 8, identity: 0.75

gatgccaaactggtcaagctggcgattatcaa	CRISPR spacer
tatgacaaactggacaagctggcggtcctata	Protospacer
 *** ******** **********.*. *  *

67. spacer 4.5|1063819|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to JQ680367 (Unidentified phage clone 2203_scaffold802 genomic sequence) position: , mismatch: 8, identity: 0.75

ggaaataaactccttgagcagcggcaagcaac	CRISPR spacer
gcgcttgaacgccttgagcagcggcaggcaag	Protospacer
* .  *.*** ***************.****

68. spacer 4.9|1064064|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
ccgaggtcgcccgctatcaggatcgccacggc	Protospacer
.* * *********.****** ******   *

69. spacer 4.9|1064064|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tcgagaccgcccgccatcaggtgctccagcgt	Protospacer
** * ..*************** * ***** .

70. spacer 4.9|1064064|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP032342 (Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tcgagaccgcccgccatcaggtgctccagcgt	Protospacer
** * ..*************** * ***** .

71. spacer 4.9|1064064|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tcgagaccgcccgccatcaggtgctccagcgt	Protospacer
** * ..*************** * ***** .

72. spacer 4.9|1064064|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tcgagaccgcccgccatcaggtgctccagcgt	Protospacer
** * ..*************** * ***** .

73. spacer 4.9|1064064|32|NC_021844|CRISPRCasFinder,CRT matches to MF150911 (Ralstonia phage DU_RP_II, complete genome) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tccacgtcggccgccatccggttgcgcgcctg	Protospacer
********* ******** ****   *. **

74. spacer 4.9|1064064|32|NC_021844|CRISPRCasFinder,CRT matches to MN996301 (Ralstonia phage RpY1, complete genome) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tccacgtcggccgccatccggttgcgcgcctg	Protospacer
********* ******** ****   *. **

75. spacer 4.9|1064064|32|NC_021844|CRISPRCasFinder,CRT matches to NC_011273 (Mycobacterium phage Myrna, complete genome) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
accacgtcgcctgccaccaggttcacgccgtc	Protospacer
 **********.****.*******.*    **

76. spacer 3.3|1046875|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051686 (Duganella sp. GN2-R2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ccccgatagcgacgcttctgtagtcactggca	CRISPR spacer
gtccgatagcgacacttcggtagtcaggcgtg	Protospacer
 .***********.**** *******   *..

77. spacer 4.4|1063758|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to MN586053 (Arthrobacter phage BeatusComedenti, complete genome) position: , mismatch: 9, identity: 0.719

gatgccaaactggtcaagctggcgattatcaa	CRISPR spacer
gtggagcgtctggtcaagctggggatcatcaa	Protospacer
*  *   . ************* ***.*****

78. spacer 4.4|1063758|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to KT964103 (Klebsiella phage vB_KpnP_KpV41, complete genome) position: , mismatch: 9, identity: 0.719

gatgccaaactggtcaagctggcgattatcaa	CRISPR spacer
tatgacaaactggacaagctggcggccctata	Protospacer
 *** ******** **********... *  *

79. spacer 4.4|1063758|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NC_031254 (Arthrobacter phage Kitkat, complete genome) position: , mismatch: 9, identity: 0.719

gatgccaaactggtcaagctggcgattatcaa	CRISPR spacer
gtggagcgtctggtcaagctggggatcatcaa	Protospacer
*  *   . ************* ***.*****

80. spacer 4.9|1064064|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 9, identity: 0.719

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tccacgtcgcgcgccatcagggtcattgacca	Protospacer
********** ********** **.....*.

81. spacer 4.9|1064064|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 9, identity: 0.719

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
agcccggcgcccgccatcaggctcgccccggc	Protospacer
  * ** **************.*****    *

82. spacer 4.9|1064064|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP015040 (Rhodovulum sp. P5 plasmid pRGUI01, complete sequence) position: , mismatch: 9, identity: 0.719

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
gccacctcgcccgcgatcaggttcatcgacgg	Protospacer
 **** ******** *********..*..*

83. spacer 4.9|1064064|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP016619 (Microvirga ossetica strain V5/3m plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
acatcatcgcccgcgatgaggttcgccagaag	Protospacer
 *  *.******** ** ***********

84. spacer 4.9|1064064|32|NC_021844|CRISPRCasFinder,CRT matches to MH588547 (Caulobacter phage CcrSC, complete genome) position: , mismatch: 9, identity: 0.719

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
gcgatatcgcccgccaccagggtcgccagact	Protospacer
 * *..**********.**** ******* ..

85. spacer 3.9|1047242|32|NC_021844|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatcgagagtgcgaagaggcagaacgggca	CRISPR spacer
gaaggtggcagtgccaagagacagaacgggca	Protospacer
  .. .*. ***** *****.***********

86. spacer 3.11|1047364|32|NC_021844|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgttcatcggcagcgtcacgcaatatgaagat	CRISPR spacer
acatcatcggcatcgtcacgccatatccggca	Protospacer
   ********* ******** ****  .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1763884 : 1773055

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569168.1\|1763884_1764832_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.8e-10	27.8
WP_000824854.1\|1764815_1765547_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|1765527_1765635_-	protein YohO	NA	NA	NA	NA
WP_001240418.1\|1765694_1766426_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_000272850.1\|1766648_1768334_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_000598637.1\|1768330_1769050_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950413.1\|1769096_1769564_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_001197951.1\|1769620_1770151_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703137.1\|1770322_1770781_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_000195334.1\|1771021_1773055_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_2

1943098 : 1950366

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000394197.1\|1943098_1943518_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_017465541.1\|1943520_1944789_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	3.5e-226	91.7
WP_000208509.1\|1945243_1945456_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_024131163.1\|1945466_1945655_+	hypothetical protein	NA	NA	NA	NA
WP_020839256.1\|1945914_1947126_-	porin OmpC	Q1MVN1	Enterobacteria_phage	3.4e-109	56.5
WP_020839257.1\|1947775_1948087_+	hypothetical protein	NA	NA	NA	NA
WP_017441839.1\|1948166_1948862_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
WP_001157322.1\|1948935_1950366_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_3

2860063 : 2961006

Enterobacteria_phage(33.33%)

transposase,tail,terminase,protease,portal,tRNA,lysis,holin,capsid,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020839432.1\|2860063_2860744_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	3.4e-82	71.5
WP_000374046.1\|2861362_2862022_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
WP_000904446.1\|2862108_2862438_+	sulfurtransferase TusE	NA	NA	NA	NA
WP_000072884.1\|2862434_2862716_-	acylphosphatase	NA	NA	NA	NA
WP_017465795.1\|2862764_2863544_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_000859416.1\|2863569_2864118_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000140480.1\|2864332_2865544_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000561983.1\|2865601_2865919_+	heat shock protein HspQ	NA	NA	NA	NA
WP_001537782.1\|2865963_2866377_-	CoA-binding protein	NA	NA	NA	NA
WP_000847719.1\|2866550_2867213_+	DUF2057 family protein	NA	NA	NA	NA
WP_000424187.1\|2867307_2867766_+	methylglyoxal synthase	NA	NA	NA	NA
WP_001261222.1\|2869981_2870428_+	YccF domain-containing protein	NA	NA	NA	NA
WP_000950869.1\|2870446_2872600_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001202375.1\|2872586_2873192_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000288732.1\|2873408_2873918_+	cell division inhibitor SulA	NA	NA	NA	NA
WP_023193195.1\|2874274_2875327_+	porin OmpA	NA	NA	NA	NA
WP_000877172.1\|2875398_2875851_-	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_000156448.1\|2876036_2877797_+\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000227928.1\|2877865_2878384_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_001537784.1\|2878483_2878651_-	ribosome modulation factor	NA	NA	NA	NA
WP_000759136.1\|2878906_2879470_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_000433416.1\|2879466_2881107_-	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000333153.1\|2881111_2882365_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000053044.1\|2882379_2884287_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
WP_020839434.1\|2884299_2886408_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000224075.1\|2886506_2887616_+	MOSC domain-containing protein	NA	NA	NA	NA
WP_001220671.1\|2887612_2888155_-	cell division protein ZapC	NA	NA	NA	NA
WP_000291723.1\|2888320_2889331_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_020839435.1\|2889538_2892151_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	2.2e-20	22.8
WP_000497440.1\|2892577_2892784_+	DinI-like family protein	S4TNM0	Salmonella_phage	1.8e-31	100.0
WP_001536069.1\|2893259_2894060_+	hypothetical protein	NA	NA	NA	NA
WP_010835411.1\|2894627_2896118_+	type III secretion effector GogB	Q9MBM1	Phage_Gifsy-1	1.6e-254	98.6
WP_000143168.1\|2896947_2897529_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.3e-94	88.9
WP_023193196.1\|2897528_2900024_-\|tail	prophage tail fiber N-terminal domain-containing protein	E5G6P0	Salmonella_phage	7.3e-159	76.1
WP_000178849.1\|2900077_2900320_-	hypothetical protein	NA	NA	NA	NA
WP_000514902.1\|2900358_2903721_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.5
WP_001750110.1\|2903782_2904430_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	1.6e-89	78.1
WP_000662738.1\|2904327_2905065_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	9.8e-128	84.2
WP_001152686.1\|2905071_2905770_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	1.6e-103	75.9
WP_000447370.1\|2905779_2906109_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	7.3e-43	71.3
WP_000372075.1\|2906111_2909207_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	4.8e-277	61.7
WP_010989052.1\|2909178_2909517_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
WP_000479607.1\|2909513_2909909_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
WP_000971954.1\|2909959_2910706_-	Ig-like domain-containing protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
WP_000033885.1\|2910713_2911115_-\|tail	tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
WP_000677089.1\|2911111_2911690_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
WP_000817265.1\|2911798_2912929_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q9G0F2	Phage_Gifsy-1	4.0e-213	98.1
WP_000083292.1\|2912961_2913345_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.2e-28	55.6
WP_000201486.1\|2913355_2913715_-	DNA-packaging protein FI	NA	NA	NA	NA
WP_000522566.1\|2913772_2914801_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
WP_000011260.1\|2914855_2915203_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
WP_001189495.1\|2915215_2916712_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	3.3e-98	52.9
WP_000831820.1\|2916701_2918282_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	1.2e-188	62.8
WP_000201416.1\|2918278_2918482_-	gpW family protein	K7PM10	Enterobacteria_phage	2.1e-16	70.8
WP_000623086.1\|2918465_2920397_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	2.0e-257	65.4
WP_001102153.1\|2920368_2920914_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
WP_000669693.1\|2921199_2921601_+	pre-peptidase C-terminal domain-containing protein	NA	NA	NA	NA
WP_001533543.1\|2921836_2922289_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.9e-66	92.7
WP_000984587.1\|2922306_2922759_-	lysozyme	A0A0M4R365	Salmonella_phage	5.1e-79	98.0
WP_001574216.1\|2922742_2923072_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_001110788.1\|2923347_2924034_+	PipA/GogA/GtgA family type III secretion system effector	Q9MBM2	Phage_Gifsy-1	5.1e-131	98.7
WP_000798706.1\|2924394_2924844_+	lipoprotein	NA	NA	NA	NA
WP_001534733.1\|2924979_2925105_-	hypothetical protein	NA	NA	NA	NA
WP_020839436.1\|2925503_2926301_-	antitermination protein	A0A0M4S661	Salmonella_phage	3.4e-150	99.2
WP_001617856.1\|2926290_2926437_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
WP_000784707.1\|2926433_2926661_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	6.6e-19	76.8
WP_000940758.1\|2926657_2927257_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	6.1e-96	82.9
WP_000911591.1\|2927320_2927569_-	hypothetical protein	NA	NA	NA	NA
WP_100148602.1\|2927845_2928226_-	T3SS effector NleG family protein	B6DZB9	Enterobacteria_phage	7.5e-23	51.5
WP_000089413.1\|2928766_2929162_-	DUF977 family protein	A0A088CBK9	Shigella_phage	2.0e-18	39.3
WP_000788952.1\|2929179_2929932_-	ATP-binding protein	A0A088CBP4	Shigella_phage	1.7e-103	77.0
WP_020839439.1\|2929938_2930814_-	hypothetical protein	A0A088CD36	Shigella_phage	1.2e-31	58.5
WP_001669257.1\|2930858_2931353_-	hypothetical protein	NA	NA	NA	NA
WP_001033909.1\|2931339_2931594_-	helix-turn-helix transcriptional regulator	K7PKH4	Enterobacteria_phage	1.2e-16	59.4
WP_001224472.1\|2931690_2932116_+	helix-turn-helix domain-containing protein	K7PH71	Enterobacterial_phage	1.2e-13	56.3
WP_024135615.1\|2932559_2932739_-	hypothetical protein	NA	NA	NA	NA
WP_000613375.1\|2933169_2933454_+	hypothetical protein	K7PGY4	Enterobacteria_phage	1.7e-08	53.2
WP_000799631.1\|2933528_2933864_+	hypothetical protein	NA	NA	NA	NA
WP_000023724.1\|2933993_2937173_+	PD-(D/E)XK nuclease-like domain-containing protein	H6WRX1	Salmonella_phage	0.0e+00	68.2
WP_077906096.1\|2937135_2938293_+	recombinase RecT	S4TTE8	Salmonella_phage	6.7e-216	98.7
WP_001237031.1\|2938335_2938575_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_000065276.1\|2938615_2938864_+	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001262314.1\|2938908_2940201_+	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	1.3e-252	99.5
WP_000191404.1\|2940395_2941598_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_020839440.1\|2941678_2943112_-	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_000544857.1\|2943357_2944572_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA
WP_000762343.1\|2944889_2945351_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_000117867.1\|2945551_2946952_+\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	4.5e-81	35.8
WP_020839441.1\|2947557_2948649_+	porin OmpF	Q1MVN1	Enterobacteria_phage	2.8e-99	51.5
WP_000462653.1\|2948833_2950024_+	aspartate transaminase	NA	NA	NA	NA
WP_001109471.1\|2950085_2950733_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_000357052.1\|2950760_2951309_-	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
WP_020839442.1\|2951568_2953392_-	L,D-transpeptidase	NA	NA	NA	NA
WP_017440920.1\|2953736_2958203_-	chromosome partition protein MukB	NA	NA	NA	NA
WP_000060025.1\|2958202_2958907_-	chromosome partition protein MukE	NA	NA	NA	NA
WP_001288828.1\|2958887_2960210_-	chromosome partition protein MukF	NA	NA	NA	NA
WP_001154028.1\|2960202_2961006_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA

DBSCAN-SWA_4

4092159 : 4102833

Enterobacteria_phage(60.0%)

integrase

attL 4097729:4097745|attR 4106397:4106413

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020839650.1\|4092159_4094493_-	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	84.3
WP_000743150.1\|4094507_4094828_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_001604623.1\|4094824_4095052_-	hypothetical protein	NA	NA	NA	NA
WP_020839651.1\|4095048_4095600_-	ash family protein	Q7M2A7	Enterobacteria_phage	1.1e-35	71.3
WP_000556587.1\|4095596_4095863_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_020839652.1\|4096400_4097138_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	3.1e-81	65.7
WP_000984205.1\|4097134_4097380_+	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	1.6e-31	77.8
WP_020839654.1\|4097396_4097963_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	2.6e-56	62.7
4097729:4097745	attL	NA	NA	NA	NA
WP_020839655.1\|4098182_4098746_-	type II restriction endonuclease PvuII	A0A1B0UXL9	Roseobacter_phage	5.5e-30	42.9
WP_010376679.1\|4098742_4098979_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000970946.1\|4099034_4100030_+	site-specific DNA-methyltransferase	S0A236	Cellulophaga_phage	3.5e-19	24.2
WP_020839656.1\|4100083_4101343_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	3.7e-74	41.2
WP_000152566.1\|4101813_4102833_+	NAD(P)-dependent alcohol dehydrogenase	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	1.7e-42	30.1
4106397:4106413	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_021817

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_021844

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection