CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_021717	Alteromonas mediterranea U7, complete sequence	1 crisprs	DinG,DEDDh,WYL,cas3,Cas9_archaeal,RT,csa3,PrimPol	1	1	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_021717_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_021717_1

512167-512246

Orphan

Consensus_repeat	Method
AAATAAGTGTTGACGTGAGCGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_021717_1

>merge|NC_021717|1|512167-512246|CRISPRCasFinder
AAATAAGTGTTGACGTGAGCGCTTTGAGCGTTCGGAAAGAATGTGACACTTTTTTTAAAATAAGTGTTGACGTGAGCGCT

>NC_021717|1|1|512167-512246|CRISPRCasFinder
AAATAAGTGTTGACGTGAGCGCT	TTGAGCGTTCGGAAAGAATGTGACACTTTTTTTA
AAATAAGTGTTGACGTGAGCGCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_021717.1\|WP_012516940.1\|501858_502863_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NC_021717.1\|WP_020744640.1\|510840_511989_-\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341481
NC_021717.1\|WP_020742731.1\|500850_501804_-\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NC_021717.1\|WP_012516951.1\|518407_519409_+\|branched-chain-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|237363
NC_021717.1\|WP_020742733.1\|504430_505498_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NC_021717.1\|WP_010179497.1\|527388_527700_+\|30S-ribosomal-protein-S10	unknown	unknown	gnl\|CDD\|179076
NC_021717.1\|WP_012516958.1\|528375_528981_+\|50S-ribosomal-protein-L4	unknown	unknown	gnl\|CDD\|235404
NC_021717.1\|WP_012516952.1\|519479_520226_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|184516
NC_021717.1\|WP_020742732.1\|503239_504394_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NC_021717.1\|WP_020742735.1\|506734_507664_+\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|163190
NC_021717.1\|WP_014947966.1\|509393_510011_+\|gluconate-2-dehydrogenase-subunit-3-family-protein	unknown	unknown	gnl\|CDD\|379295
NC_021717.1\|WP_020742736.1\|510076_510844_+\|DUF1080-domain-containing-protein	unknown	unknown	gnl\|CDD\|368908
NC_021717.1\|WP_015066066.1\|507708_509394_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NC_021717.1\|WP_015066070.1\|524120_524615_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NC_021717.1\|WP_012516957.1\|527718_528357_+\|50S-ribosomal-protein-L3	unknown	unknown	gnl\|CDD\|234564
NC_021717.1\|WP_012516959.1\|528977_529277_+\|50S-ribosomal-protein-L23	unknown	unknown	gnl\|CDD\|235586
NC_021717.1\|WP_012516956.1\|524754_526971_-\|GspE/PulE-family-protein	unknown	unknown	gnl\|CDD\|225363
NC_021717.1\|WP_020742738.1\|520402_520864_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380376
NC_021717.1\|WP_088941597.1\|505518_506742_+\|nucleoside-permease	unknown	unknown	gnl\|CDD\|340866
NC_021717.1\|WP_012516954.1\|521338_524056_+\|aconitate-hydratase-AcnA	unknown	unknown	gnl\|CDD\|236445

Protein	Function_ID	Function_description	E-value
NC_021717.1\|WP_012516940.1\|501858_502863_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	5.85089e-120
NC_021717.1\|WP_020744640.1\|510840_511989_-\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341481	cd08551, Fe-ADH, iron-containing alcohol dehydrogenases (Fe-ADH)-like. This family contains large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases, insect-type, or short-chain alcohol dehydrogenases, iron-containing alcohol dehydrogenases, among others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.	9.91617e-165
NC_021717.1\|WP_020742731.1\|500850_501804_-\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	5.64643e-20
NC_021717.1\|WP_012516951.1\|518407_519409_+\|branched-chain-amino-acid-aminotransferase	gnl\|CDD\|237363	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional.	2.65398e-161
NC_021717.1\|WP_020742733.1\|504430_505498_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	2.65696e-39
NC_021717.1\|WP_010179497.1\|527388_527700_+\|30S-ribosomal-protein-S10	gnl\|CDD\|179076	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed.	1.17155e-69
NC_021717.1\|WP_012516958.1\|528375_528981_+\|50S-ribosomal-protein-L4	gnl\|CDD\|235404	PRK05319, rplD, 50S ribosomal protein L4; Provisional.	2.88904e-112
NC_021717.1\|WP_012516952.1\|519479_520226_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|184516	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase.	4.42517e-178
NC_021717.1\|WP_020742732.1\|503239_504394_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	8.68567e-48
NC_021717.1\|WP_020742735.1\|506734_507664_+\|TIM-barrel-protein	gnl\|CDD\|163190	TIGR03234, OH-pyruv-isom, hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.	3.6891e-26
NC_021717.1\|WP_014947966.1\|509393_510011_+\|gluconate-2-dehydrogenase-subunit-3-family-protein	gnl\|CDD\|379295	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3. This family corresponds to subunit 3 of the Gluconate 2-dehydrogenase enzyme that catalyzes the conversion of gluconate to 2-dehydro-D-gluconate EC:1.1.99.3.	3.48671e-36
NC_021717.1\|WP_020742736.1\|510076_510844_+\|DUF1080-domain-containing-protein	gnl\|CDD\|368908	pfam06439, DUF1080, Domain of Unknown Function (DUF1080). This family has structural similarity to an endo-1,3-1,4-beta glucanase belonging to glycoside hydrolase family 16. However, the structure surrounding the active site differs from that of the endo-1,3-1,4-beta glucanase.	4.81418e-43
NC_021717.1\|WP_015066066.1\|507708_509394_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	1.80578e-105
NC_021717.1\|WP_015066070.1\|524120_524615_-\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	2.74835e-06
NC_021717.1\|WP_012516957.1\|527718_528357_+\|50S-ribosomal-protein-L3	gnl\|CDD\|234564	PRK00001, rplC, 50S ribosomal protein L3; Validated.	5.71616e-129
NC_021717.1\|WP_012516959.1\|528977_529277_+\|50S-ribosomal-protein-L23	gnl\|CDD\|235586	PRK05738, rplW, 50S ribosomal protein L23; Reviewed.	5.66701e-45
NC_021717.1\|WP_012516956.1\|524754_526971_-\|GspE/PulE-family-protein	gnl\|CDD\|225363	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion].	2.497e-164
NC_021717.1\|WP_020742738.1\|520402_520864_-\|cupin-domain-containing-protein	gnl\|CDD\|380376	cd06121, cupin_YML079wp, Saccharomyces cerevisiae YML079wp and related proteins, cupin domain. This family includes eukaryotic, bacterial, and archaeal proteins homologous to YML079wp, a Saccharomyces cerevisiae cupin-like protein of unknown function that structurally resembles plant seed storage and ligand-binding proteins (canavalin, glycinin, auxin binding protein) as well as the bacterial RmlC epimerase. YML079wp is non-essential in yeast and localizes to the nucleus and cytoplasm. The presence of a hydrophobic ligand within a well-conserved binding pocket inside the cupin beta-barrel and sequence similarity with bacterial epimerases suggests a possible biochemical function for YML079wp and its homologs. Also included in this family are Shewanella oneidensis So0799, Agrobacterium fabrum Atu3615 and Branchiostoma belcheri Bbduf985. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold and forms a homodimer.	6.09372e-53
NC_021717.1\|WP_088941597.1\|505518_506742_+\|nucleoside-permease	gnl\|CDD\|340866	cd06177, MFS_NHS, Nucleoside:H(+) symporter family of the Major Facilitator Superfamily of transporters. The prototypical members of the Nucleoside:H(+) symporter (NHS) family are Escherichia coli nucleoside permease NupG and xanthosine permease. Nucleoside:H(+) symporters are proton-driven transporters that facilitate the import of nucleosides across the cytoplasmic membrane. NupG is a broad-specificity transporter of purine and pyrimidine nucleosides. Xanthosine permease is involved in the uptake of xanthosine and other nucleosides such as inosine, adenosine, cytidine, uridine and thymidine. The NHS family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.95987e-162
NC_021717.1\|WP_012516954.1\|521338_524056_+\|aconitate-hydratase-AcnA	gnl\|CDD\|236445	PRK09277, PRK09277, aconitate hydratase AcnA.	0

>NC_021717.1|WP_020744640.1|510840_511989_-|iron-containing-alcohol-dehydrogenase
MKVSEFKTAGKLITGLGAIKALADEMTRLGIKDCAVVTDKGVSSSGLLEQVLALLPYPPLHIIDDIPPEPAVNIIEAKLNDLRENKVDGIIALGGGSAIDSAKVLAATYDHSGSISKLFGENTLSERRLPLIVIPTTAGTGSEVTNIAILSDPKAQMKKGIVSHCLLPDIAIVAPEMTKTCPPSITAASGIDAFVHALEAYISVNASPITDALAEKALKLIFNSLVHAYNNGENLAAREDMATGSLMAGLAFGNAGVGAVHALAYPLGGRFHLSHGMSNAVMLPHVLKVNAPFCQDKLYCVAKLLKVCERHHSKDEAIKLLLIAIEKLCRDVDIPASLTHFNISSSCVGELAEEASKVTRLLRNNPKQLSIEEIEDIYRLAF
>NC_021717.1|WP_020742736.1|510076_510844_+|DUF1080-domain-containing-protein
MNKTLVASTVALLMPLSACATTDADTEKSESRLTREQQAAKTEVWEPVPEVVSFDKVGVPSDAISLIGDDLSNWTSVKEGDAKWTLQDGVLTVKPGTGDIKTNAEFCDVQLHVEWRAPQPEAGMEGQQRNNSGIFLQQRYEIQVLDSYQNKTYPNGQAASVYKQSIPLVNAMKAPGEWQTYDIIYKAPTFNGEALATKGYVTVIHNGVVVQNHTEIQGTTEWIGAPKYKAHGCAPLQLQDHGNLVSFKNMWVRPL
>NC_021717.1|WP_014947966.1|509393_510011_+|gluconate-2-dehydrogenase-subunit-3-family-protein
MERRELLKLIATATGTALFAGNVLAYTDVPAVPLSDTLFNEKDVALLNEMGEVIIPQTDTPGAKAANVGATMAVLVTDCYTPLLQKTFLDGIKKISSLSQSRFNKQFVQLTKQEREALFNDLDVEAKAANLANGVYQGVETGKPSQWEPGTDEPTPHYFTLLKQLTLYCFFTSQVGATKVLRYVAIPGRYDGAFPYKKGDKAWAT
>NC_021717.1|WP_015066066.1|507708_509394_+|GMC-family-oxidoreductase
MASNEYDAIVIGSGISGGWAAKELTEKGLKVLMLERGQNIEHIKDYKNAHKEDWDFPHRDLPTQAMKVDYPVLKRDYPLNEKTYGMWANEKENPYTEDKRFDWYRGYHVGGRSLLWGRQSYRLNKEDFEANAKEGIAVDWPIRYDDLAPWYDYVEKFAGISGNRDGLDVLPDGVYQPPMPMNIVEESVAARVKKAYEGARHMVHGRTSNMTQSKPEEGRVHCQYRNKCWLGCPFGGYFSTQASTLPAAVKTGNLTLRPFSIVKEILFDKDKKRATGVEIIDAETNETYVFKSKIIFVNASALNSAWVLMNSATDVWDGGLGSSSGELGHNVMDHHFRVGASAEVEGFDDKYTYGRRPSGFYVPRFRNWGSDKRDYLRGFGYQGGASRSGWRKDIAELGIGAGLKDAITEPGPWTIGMTAFGEILPYHENKVYLNKKVTDKWGLPVLAMDVEIKENELKMRKDMQQDAIEMFEAAGLKNVQGWDADYAPGMGIHEMGTARMGRDPKSSVLNAHNQVWDAPNVFVTDGAAMTSASCVNPSLTYMALTARAADFAVEELKRGNL
>NC_021717.1|WP_020742735.1|506734_507664_+|TIM-barrel-protein
MHNITRRKLLQSMAMTGAGIAGTGLAAAGLATAMPAIASTNGTKGSNTMNTPLKGNVKHSVSRWTYGDLSIEELCQTVKQLGFGAIDLVGPEDWPVLKQYGIDSSMCNGAEISLEDGFIHSELHDELEARYIKHIDLVADAGYTNLICFSGNARGMSREDGLENAVKGLKRILPHAEKRNVVIFMELFNSKVDHPDYMADNSAWAIELCKRLGSKHFSLLYDIYHMQINEGDIIRTIRDNYQYFGHYHTAGVPGRHEIDASQELNYEAIAKAIVETGFKGYLAQEFIPTPKTKANRIASLQQAIHICDV
>NC_021717.1|WP_088941597.1|505518_506742_+|nucleoside-permease
MTMITLRLSLMMFLQFFIWGGWFVTLGTYLSNTLSANGGQIGMSFSTQSWGAIIAPFIVGLIADRFFNAEKILGLLHIVGAVLMYCMYQANDFASFYPYVLAYMIAYMPTLALVNSVSFGQMVDPSKEFGKVRVWGTIGWIVAGLMISYVFSWDSAQSIADGMLKNTFLLCSVASLMLGVFSFTLPNTPPQSSGKAVTIRDILGLDALALLKDKNFFVFFLSSVLICIPLAFYYQNANPFLTEIGVENATGKMTLGQVSEVLFMLALPVFLNRFGIKATLVIGMAAWVVRYALFAFGNADEGLFMLIVGIALHGICYDFFFVSGQIYTNSKAGENVKSAAQGLITLATYGVGMLVGFAVAGAITDTYTMETGAHSWQQVWLFPAGFAAVVLVLFAILFRKEKVNADA
>NC_021717.1|WP_020742733.1|504430_505498_+|sugar-phosphate-isomerase/epimerase
MATNQQPIKGPAIFLAQFMGKEAPFDTLENMAKWAASLGYKGIQVPTDPSLFDLEKAAESQEYCDNIAKICKDAGVEITELSTHLQGQLVAVHPAYDELFDNFAPAHLHGKPQERTEWAINQLKCAAIASKRLGLKAHATFSGALMWHLVYPWPQRPAGLVEQGFAELAKRWKPILDAFDDAGVDVCYEIHPGEDLHDGASFEQFLKAVDDHPRANILFDPSHFVLQQLDYLDFIDRYHSRIKMFHVKDAEFNPNGRNGVYGGYQDWQDRAGRFRSLGDGQVDFKGIFSKLTQYGFTGWAVLEWECCLKDSAQGAAEGAPFIASHIIEPSKYAFDDFAGGDVSEVKNNRILGLER
>NC_021717.1|WP_020742732.1|503239_504394_+|Gfo/Idh/MocA-family-oxidoreductase
MQPIRMGMIGGGEGAFIGAVHRHAAGLDGNYQLVCGAFSRNEENNTRTASALNVSTSRTYDSWQSMLEEEAKLPEQQRMQVVVIVTPNHLHVPISLAAIKARFHVFCEKPAGVSFAEVKELQDVIHASESLYGLAHTYLGYPMVWQARHLVESGKLGNIRKVYVEYPQGWLSGEEETHNKQAQWRTDPAISGATGAMGDIGTHAFGLVEFVLNDSVTSLCGELNTHVEGRRLDDDGAALIKTKKGASGVLIASQVCAGEENALKIRVYGDKGGLEWRQMEPNSVIYRPVDAPYQVFRAGHGQVGLCDAASARCRVPAGHPEGYLEAMANLYTDFAKAVRANQKGKADGVPGINSGIRGMVFIDAMLASTDSDTKWESVSQEGTQ
>NC_021717.1|WP_012516940.1|501858_502863_-|LacI-family-transcriptional-regulator
MANIRDVADSAGVSVATVSRTLQQPERVSPKTRNKVMAAVQAVGYKPNLMAVKFRSGKTHNLVVLVPTVANVFFARVISGMQEAAAELGYSILLANTLGNSEIESHYAKMVSTSQADGLIQLRAHNPFDATMINDNGLLPMVNACEVIDDGQYPVVSLDNRAAAKAMTEHLISLGHTRIAMIKGPNSSPLTQERLVGYKDALAQANIAFDESLLFPGDFTLQAGYNAGETISHLESRPTAVFCENDETAIGAMQAFKQANLHVPNDISVAGFDDIAFSAFVDPPLTTIAQPAEEFGRTAVTLLVDLLNGKIRKAPKVIMPFELIVRESTGKALG
>NC_021717.1|WP_020742731.1|500850_501804_-|sugar-phosphate-isomerase/epimerase
MNLSKTNLSKTAILDAASNIGSGVSRRQFIKYSSGLLAAMSAPAVLASTSSVQGHGSDKGAMMKGMQKSAVGLQLYTLRDIMKVSVPATLKLVADVGYSEMEFAGYFDHSAKEIKQLLDDNGLTAPSAHIQLDAFDTNLSQILDDAQTVGHKYLVVPWLSEAQRGTGIAPYQALADKLNTIGEACKKEGITLAYHNHDFEFEVRDGKTPLDVLITQTDPDLVAMELDLYWTVKAGKNPIDYFKQYPGRFKLWHVKDLAEDGSFADVGTGTINFKEIFAHGKLAGIEHKFVERDQTTDRIATIEQGFKAVSALNKGVS
>NC_021717.1|WP_012516951.1|518407_519409_+|branched-chain-amino-acid-aminotransferase
MAVFGTVFMPQMALATFVNDKWTDTEFVSADSISLHPGAHVLHYSSTCFEGLKAFKHEDGSINIFRMDKNIERFAQSSRLLNLPEIDKAQVEKMIIDIVAKYASEVPEPPGSMYIRPTHIGTEASIGKAAAPSADSMLYVLLSPVGDYFAGGAKPLRLLLDETGMRCAPHMGMVKSGGNYASALPPILKARAEVQADQILFCPNGDVQETGAANFLLIDGNEIITKGLDSSFLHGVTRATVLQIAKDHGMKVSERDITVEELLERAAKPNTEAALSGTAAVLTPVGTFIHNDKEYQVGSGEAGPVTMKLRQALNDIQWGKAEDTHNWLVKVPN
>NC_021717.1|WP_012516952.1|519479_520226_-|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase
MYKLVLIRHGESQWNLENRFTGWHDVDLTDTGVAQAKTAGQLLKDAGFTFDQAYTSVLLRAIKTLNIALEEMGQHYLPVERHWRLNERHYGALTGLDKAETAAKHGEEQVKIWRRSFDIPPPAVEDDSEHFPGHDPRYNNVDADILPRGESLKLTIERVLPYWHDVIRPDIQAGKRVIIAAHGNSLRALVKYLDGMSDEEVLGLNIPTGVPLVYELDENLKPISKEYLGDADAIKAMMDAVAKQGQAK
>NC_021717.1|WP_020742738.1|520402_520864_-|cupin-domain-containing-protein
MTHPLIKKYNLEPHPEGGFYRQVFRSENKTTSYFHGASRPALTHIYFLLLKGQVSRFHRVLHDEVWNHYEGAPLQLFQIQKQQLWERRIGGDNNDYVEVVEAGNFQGAATMGDYSLVGCTVAPGFDFEDFSFIEEPSMKEWIKVAHPDLTRFI
>NC_021717.1|WP_012516954.1|521338_524056_+|aconitate-hydratase-AcnA
MTYKSFSQLEVNGKNFKAVNFDSIGNQYALDRLPFCIKILLENLIRHEDEEFVSSSDIEQVAKWDTDNHADHEVSFVPARVILQDFTGVPAIVDLAAMRDAVNRLGGDAQAINPLNPVELVIDHSVMVDHFAEENALEKNTDIEIERNKERYQFLKWGQSSFDNFKVVPPGRGIVHQVNLEYLARCAFTKEQDSETLVYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPVTMLLPKVVGFRLSGKLPAGVTATDMVLTITQQLREHGVVGKFVEFFGPGLKHLTTADRATIANMAPEYGATCGIFPIDDVALDYLRLTGRDEDQIALVEEYAKFSQLWHDDHSKDAQYHETLELNLDEVVPSLAGPKRPQDRIALDKAAEAFNEWHRSQIDVKVLDEETDLIAEAGLGTSDDVDEDHDSFVEFRGSKFNLEDGAIVIAAITSCTNTSNPSVLVGAGLLAKKAAEKGLTRKPWVKTSLAPGSQVVTQYLEDAGLMDPLESLGFNLVGYGCTTCIGNSGPLPDAITDAIRKAKLTVTSVLSGNRNFEGRIHPDVAANYLASPPLVVAYALAGNMNIDITKEPLGQASDGAPVYLKDIWPTEDEIQQYIAKNVTGDLFKEKYADVFKGSGEWNELEVSKTSVYDWPESTYIKHPPFFEVMEKEPEALTAIENARCLVKVGDSITTDHISPAGAIAKDSPAGEYLQAQGVSPKDFNSYGSRRGNHEVMMRGTFANVRLKNQLAPGTRGSATTHFPSGDSMSIFHAAMRYKDDGVPAVVIGGKEYGTGSSRDWAAKGPSLMGVKAVLAESYERIHRSNLIGMGILPLQFKEGESASTLALKGNESFSVGAVERGQSEVEVKAVTDDGETTAFMMDIRIDTSNEFTYFENGGILHYVIREYLKK
>NC_021717.1|WP_015066070.1|524120_524615_-|sel1-repeat-family-protein
MKKLITLAVTISCLTFSGSTLAQSKTKNHIWKAEYLSTLELGLHALKAQKYEKALKKLTASAKMGNKEGQYYLAQMYFQGWGTPVNYEEGWLWLSVAMEQKTAEWNRSYRQIKKALPEDYITALQPYVDEYISLYGAKAQDLRCEKRAAIGSNIKEIICEKRYY
>NC_021717.1|WP_012516956.1|524754_526971_-|GspE/PulE-family-protein
MEVVNNQQTFAQIKRILNNHSTLLDAYGLLEPMILGLFDAKRMSIFQRRRQHQDLVARFKTGKETLEIKVPISPMSIAGYVALSQKPVVIDDPYNPTLLQSIHPRLRFDGRFDKDSDFKTQNILCVPIMNAGVLMGVIQIINKNDGAFTEDDLKLGNALALILGDKFRFELGGTHNPFDLLVHKSLLEEATLKDIQATTPDIKAFIQRLVSEYRISEDEIGNSLSIHYQVPFIPYLPDKYHRFENESRLNVSYLKRNYVAVIADAHDKPIVLMAEPNNAALLMEIESAMGIDSYEIAVSLPNLILQYLGEHSGSSGPGEMSDILDEIGSSAEDSDEQIDELSDDAPAVVRLVSRILHDAKRLNASDIHIDPEKNAPTRVRMRVDGVCRDMNQVPNSHHSAVIARIKIMSNLNIAEKRVPQDGKLAFRMNGQLVEVRVATIPTVAGEGVVMRILASGGAMPIDKMNLAPSNRARLEDMIKKPHGILLVVGPTGSGKTTTLHAILGYLNTPEKKIWTAEDPVEITQPGLQQVQVSPKIGFNFAAALRAFLRADPDIILIGEMRDKETAHAGIEASLTGHLVLSTLHTNSAPETITRLLDLGLDPVNFSDACVGILAQRLIRTLCGNCKEKYIATETDIAFIERQYGKELMAELNVKTPLELYKANGCEACGNTGYKGRTGVHELLGMTPELRSLVYKEASVADMKVQAAKDGMRTLVQDAIYKVIKGDTDLAQVQIVGGE
>NC_021717.1|WP_010179497.1|527388_527700_+|30S-ribosomal-protein-S10
MPNQRIRIRLKAFDHKLIDQSTAEIVETAKRTGAQVSGPIPLPTRKERYTVLISPHVNKDARDQYEIRTHKRLVDIIEPTDKTVDALMRLDLAAGVDVQISLG
>NC_021717.1|WP_012516957.1|527718_528357_+|50S-ribosomal-protein-L3
MAIGLVGRKVGMTRIFTEDGTSIPVTVIEATPNRVTQLRTEESDGYRALQVTAGTKKANRINKAEAGHFAKAGVEAGRTLVEFRLEENEGADIEVGSEITVEIFNDTKKIDVTGTSKGKGFQGAIKRWNFSSQRMTHGNSLSHRAPGSIGQNQSPGKVFKGKKMAGQLGNKQVTTQSLEVVRVDVENGLILVKGAVPGATGNDVIVKPAVKA
>NC_021717.1|WP_012516958.1|528375_528981_+|50S-ribosomal-protein-L4
MELTLKDAQSALEVSEATFGREFNEALVHQVVVAYGAGARQGTKAQKTRAEVRGGGKKPWRQKGTGRARAGTIRSPIWVGGGRAFAAKPRDFDQKVNKKMYRGAIKSILSELIRQDRLVVVEKFGVDAPKTKALISALNEYELNDVLIVTPEVDENLFLAARNLYKVDVRDVAGIDPVSLIAFEKVLMTADAVKQLEEALA
>NC_021717.1|WP_012516959.1|528977_529277_+|50S-ribosomal-protein-L23
MKEERLLKVLVAPHVSEKSTMAAEANNTVVFKVAKDANKAEIKAAVEKLFEVEVEGVRTVNVKGKTKRHGMSFGKRSDWKKAYVVLKEGQDIDFVGGAE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_021717_1	1.1\|512190\|34\|NC_021717\|CRISPRCasFinder	512190-512223	34	NC_021717.1	34087-34120	0	1.0

1. spacer 1.1|512190|34|NC_021717|CRISPRCasFinder matches to position: 34087-34120, mismatch: 0, identity: 1.0

ttgagcgttcggaaagaatgtgacacttttttta	CRISPR spacer
ttgagcgttcggaaagaatgtgacacttttttta	Protospacer
**********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_021717_1	1.1\|512190\|34\|NC_021717\|CRISPRCasFinder	512190-512223	34	NZ_CP029091	Pseudomonas aeruginosa strain AR441 plasmid unnamed1, complete sequence	65890-65923	10	0.706
NC_021717_1	1.1\|512190\|34\|NC_021717\|CRISPRCasFinder	512190-512223	34	NZ_CP027167	Pseudomonas aeruginosa strain AR_0356 plasmid unnamed3, complete sequence	48906-48939	10	0.706

1. spacer 1.1|512190|34|NC_021717|CRISPRCasFinder matches to NZ_CP029091 (Pseudomonas aeruginosa strain AR441 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

ttgagcgttcggaaagaatgtgacacttttttta	CRISPR spacer
tctgaagttcggaaagtatctgacacttttctcg	Protospacer
*. .. ********** ** **********.*..

2. spacer 1.1|512190|34|NC_021717|CRISPRCasFinder matches to NZ_CP027167 (Pseudomonas aeruginosa strain AR_0356 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.706

ttgagcgttcggaaagaatgtgacacttttttta	CRISPR spacer
tctgaagttcggaaagtatctgacacttttctcg	Protospacer
*. .. ********** ** **********.*..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1062426 : 1071131

Streptococcus_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012517443.1\|1062426_1063719_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	4.2e-134	59.8
WP_020742982.1\|1063778_1065410_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	5.5e-147	50.0
WP_015066372.1\|1065546_1068138_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	6.4e-33	21.7
WP_012517446.1\|1068298_1068838_+	CinA family protein	B5TK85	Pseudomonas_phage	1.0e-25	45.2
WP_012517447.1\|1068958_1070005_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	2.5e-116	62.8
WP_012517448.1\|1070309_1071131_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-26	33.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage