CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_022000	Proteus mirabilis BB2000, complete sequence	2 crisprs	c2c9_V-U4,cas3,DEDDh,DinG,cas14j,csa3	0	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_022000_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_022000_1

2281720-2281862

Orphan

Consensus_repeat	Method
GGTGATATCAATTTCACAGGTGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_022000_1

>merge|NC_022000|1|2281720-2281862|CRISPRCasFinder
GGTGATATCAATTTCACAGGTGGTGGCGCTGGTAATGTCATTAAATCTGATGTTACACAAGGTGATATCAATTTTACAGGTGGCGGCATAGCAAATGTAATAAAACATAACTCTAATTATGGTAATACCAACTTTACTGGTGG

>NC_022000|1|1|2281720-2281862|CRISPRCasFinder
GGTGATATCAATTTCACAGGTGG	TGGCGCTGGTAATGTCATTAAATCTGATGTTACACAA
GGTGATATCAATTTTACAGGTGG	CGGCATAGCAAATGTAATAAAACATAACTCTAATTAT
GGTAATACCAACTTTACTGGTGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_022000.1\|WP_004244087.1\|2305630_2306245_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NC_022000.1\|WP_004248535.1\|2267836_2269087_-\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
NC_022000.1\|WP_004244084.1\|2302510_2302954_+\|prepilin-peptidase-dependent-pilin	unknown	unknown	gnl\|CDD\|236718
NC_022000.1\|WP_004244080.1\|2297830_2300497_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl\|CDD\|236500
NC_022000.1\|WP_020946012.1\|2295940_2297818_-\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|236999
NC_022000.1\|WP_012368227.1\|2300660_2301431_-\|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR	unknown	unknown	gnl\|CDD\|181879
NC_022000.1\|WP_082229489.1\|2271360_2272296_-\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	unknown	unknown	gnl\|CDD\|378065
NC_022000.1\|WP_004248539.1\|2274891_2275752_-\|small-conductance-mechanosensitive-channel-MscS	unknown	unknown	gnl\|CDD\|182386
NC_022000.1\|WP_004244077.1\|2294311_2295739_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
NC_022000.1\|WP_004248538.1\|2273274_2274009_-\|oxidative-stress-defense-protein	unknown	unknown	gnl\|CDD\|236840
NC_022000.1\|WP_020946005.1\|2272331_2273051_-\|hypothetical-protein	unknown	unknown	unknown
NC_022000.1\|WP_020946007.1\|2275843_2276215_-\|YacL-family-protein	unknown	unknown	gnl\|CDD\|235372
NC_022000.1\|WP_020946006.1\|2274099_2274723_-\|arginine-exporter-ArgO	unknown	unknown	gnl\|CDD\|236463
NC_022000.1\|WP_004244067.1\|2276385_2278983_-\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	unknown	unknown	gnl\|CDD\|236424
NC_022000.1\|WP_004250354.1\|2306247_2307000_+\|cell-division-protein-ZapD	unknown	unknown	gnl\|CDD\|235389
NC_022000.1\|WP_020946015.1\|2303053_2304157_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl\|CDD\|236694
NC_022000.1\|WP_020946016.1\|2304153_2305353_+\|protein-transporter	unknown	unknown	gnl\|CDD\|182559
NC_022000.1\|WP_004244058.1\|2269442_2270099_-\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NC_022000.1\|WP_004244059.1\|2270259_2271159_+\|LysR-family-transcriptional-regulator-ArgP	unknown	unknown	gnl\|CDD\|235144
NC_022000.1\|WP_004250361.1\|2301757_2302300_-\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	unknown	unknown	gnl\|CDD\|236984

Protein	Function_ID	Function_description	E-value
NC_022000.1\|WP_004244087.1\|2305630_2306245_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	7.55125e-90
NC_022000.1\|WP_004248535.1\|2267836_2269087_-\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
NC_022000.1\|WP_004244084.1\|2302510_2302954_+\|prepilin-peptidase-dependent-pilin	gnl\|CDD\|236718	PRK10574, PRK10574, putative major pilin subunit; Provisional.	5.15077e-55
NC_022000.1\|WP_004244080.1\|2297830_2300497_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0
NC_022000.1\|WP_020946012.1\|2295940_2297818_-\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|236999	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated.	0
NC_022000.1\|WP_012368227.1\|2300660_2301431_-\|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR	gnl\|CDD\|181879	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR.	1.72207e-168
NC_022000.1\|WP_082229489.1\|2271360_2272296_-\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	gnl\|CDD\|378065	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system. This family was recently identified as belonging to the nucleotidyltransferase superfamily. AbiEii is the cognate toxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	1.04557e-24
NC_022000.1\|WP_004248539.1\|2274891_2275752_-\|small-conductance-mechanosensitive-channel-MscS	gnl\|CDD\|182386	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS.	6.51737e-120
NC_022000.1\|WP_004244077.1\|2294311_2295739_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
NC_022000.1\|WP_004248538.1\|2273274_2274009_-\|oxidative-stress-defense-protein	gnl\|CDD\|236840	PRK11087, PRK11087, oxidative stress defense protein; Provisional.	6.92322e-114
NC_022000.1\|WP_020946007.1\|2275843_2276215_-\|YacL-family-protein	gnl\|CDD\|235372	PRK05248, PRK05248, hypothetical protein; Provisional.	4.35589e-61
NC_022000.1\|WP_020946006.1\|2274099_2274723_-\|arginine-exporter-ArgO	gnl\|CDD\|236463	PRK09304, PRK09304, arginine exporter ArgO.	1.17006e-119
NC_022000.1\|WP_004244067.1\|2276385_2278983_-\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	gnl\|CDD\|236424	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated.	0
NC_022000.1\|WP_004250354.1\|2306247_2307000_+\|cell-division-protein-ZapD	gnl\|CDD\|235389	PRK05287, PRK05287, cell division protein ZapD.	1.19728e-117
NC_022000.1\|WP_020946015.1\|2303053_2304157_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl\|CDD\|236694	PRK10436, PRK10436, hypothetical protein; Provisional.	1.37631e-179
NC_022000.1\|WP_020946016.1\|2304153_2305353_+\|protein-transporter	gnl\|CDD\|182559	PRK10573, PRK10573, protein transport protein HofC.	1.22168e-107
NC_022000.1\|WP_004244058.1\|2269442_2270099_-\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	5.44811e-141
NC_022000.1\|WP_004244059.1\|2270259_2271159_+\|LysR-family-transcriptional-regulator-ArgP	gnl\|CDD\|235144	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator.	1.29397e-161
NC_022000.1\|WP_004250361.1\|2301757_2302300_-\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	gnl\|CDD\|236984	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD.	4.62872e-132

>NC_022000.1|WP_004244067.1|2276385_2278983_-|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase
MLEEYRKHVAERAAEGVVPKPLDATQTAALVELLKSPPKGEEEFLLDLIVNRVPPGVDEAAYVKAGFLTALAKGETTSPLITPEKAVELLGTMQGGYNIHALIEALDNDKLAPIAAKALSHTLLMFDSFYDVEEKAKAGNVYAKQIMQSWADGEWFTERPELAEKITVTVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGSVGPIKQIEALNKKGFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPYVPNKRGGGVVLGGKIAPIFFNTMEDAGALPIEVDVSKLNMGDVIDIYPYKGEIRNHETNELLETFALKTEVLIDEVRAGGRIPLIIGRGLTSKARSALGLPPSTLFRHAKAVEQSDRGFSLAQKMVGRACGRDGIRPGEYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVTTHHTLPDFIMNRGGVSLRPGDGIIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGVTLRDLVHAIPLYAIKEGLLTVEKKGKKNIFSGRILEIEGLPELKVEQAFELADASAERSAAGCTIKLDKAPIIEYLQSNIVLLKWMIAEGYGDRRTLERRITAMENWLADPQLLEADADAEYAAVIEIDLNEIKEPILCAPNDPDDARLLSEVANSKIDEVFIGSCMTNIGHFRAAGKLLDQHKGQLPTRLWVAPPTKMDAAQLTEEGYYSVFGKSGARIEVPGCSLCMGNQARVADGATVVSTSTRNFPNRLGTGANVYLASAELAAVASLLGRLPEPQEYLDFINKVDETAEDTYRYLNFDQLEQYTDKATQVIFQTTV
>NC_022000.1|WP_020946007.1|2275843_2276215_-|YacL-family-protein
MDYEFQRDLTGGILARFSMDHEAIGYWLNDEIQGDISLIDQILTEMDEVKGSQKQWQLIGKEYSLSIDDEEIMVRANTLHFETDDLEEGMSYYDNESIAFCGLDDFATMLQKYRLFILENRRS
>NC_022000.1|WP_004248539.1|2274891_2275752_-|small-conductance-mechanosensitive-channel-MscS
MNELPASLDEATGWFVANQELFIQYAVNIVAAFLILFIGLFVAKMVSKGVARILTLRHIDATVVTFLSVLVRYTVIAFTLIAVLGRLGVQTASVIAVLGAAGLAVGLALQGSLSNFAAGVLIVIFRPIRAGEYVMIGAVEGTVRDVQIFSTTLRSADDRIIVIPNSKIISSEVINLSREPNRRTQIIVGVAYDADIDKVKKVLGDVVAQDKRIQHNQGVTIRLHEMAPSSLNFVVRVWTTNDDAWPVYWDLMENFKRALDANNIGIPFPQMDVYMHQAQNTVMKAE
>NC_022000.1|WP_020946006.1|2274099_2274723_-|arginine-exporter-ArgO
MLTTFFQGFLLSAAMILPIGAQNAFVLQQGSKKQYHLMSAFLCALSDVVLISGGVFGGSALLSQSEYLLLLITWGGVAFLLWYGWNAFKTAFTKEIELSQHKNQVKSRWRVIVTLVAVTWLNPHVYLDTFVVLGSIGGQLSAELRPWFTFGAVFASISWFFALSLLAAWFSPILSQVTAQRIINLFVGCVMWFIALQLAAQGWKNLF
>NC_022000.1|WP_004248538.1|2273274_2274009_-|oxidative-stress-defense-protein
MKVKAMVLASMLALGAPSIALAGAVPEGPHITTSGNATIKATPDMATLNIQVSEKAKDAAQAKKQVDERVAKYFAFLKENGVTKEDIDAANIRTQPNYEYDKKAERSVINGYTATRTVDVKIKKLDQLNTLLDGALAAGLNEINNVEFGVNDPEQYKAKAREVAIKNAIQQASSVAKGFGADLGAVYSVSYRAPEATPYPIARMKMDAMALSAPSPEAVKETYQQQSIEFKDYVDVVFELKTAK
>NC_022000.1|WP_020946005.1|2272331_2273051_-|hypothetical-protein
MKIKPLVEKEINRFEFGKIFTYRDLTPYLSNPETTVKAVSRLVKNGDIKRFAKGQFYRPKKGIFGEMQLSDTEKLKTFMYQNGKRKGYITGMGLYNRLGLTTQIPKTITIASDKSPQRKDFGTVEVKLVKAKVPVSESNREYLEILDVLSNIKKIPDSNPSEVMKVIAKKLKNIKKDGLYELINLASFYSPVTRALLGLLIENININLALELKKQLNPTTHYRIGLDSYWDNAEEWNIE
>NC_022000.1|WP_082229489.1|2271360_2272296_-|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein
MNRTAEYFKIPEVYVEKDYWVTHVLLQLSLSEFRNDFIFKGGTALSKVFGLIKRFSEDVDLAMFNNRGLSSNQIKKCMKVAEETIATGLTYIQKPDESKGSQFRKVYYKFPRIVSGEFGHASDVILLETNSFTSPEPFSFMPTESLIAEFIKKAQIEGGNEIITHYGLEKFEVNVLDIKRTVAEKILGLVRASSEADPKQALADKIRHIYDLCMIKRNKHYSQFFDSNSLWKMMDIVIQADRDQFREAGQWLDQPLHKSVLFSKSSEIWESIRGIFHGEFSELVYDSDLPSDDEVFSLLSSVASLLQKWSD
>NC_022000.1|WP_004244059.1|2270259_2271159_+|LysR-family-transcriptional-regulator-ArgP
MKRPDYRALQALDAVIRERGFERAAQKLCITQSAVSQRIKQLENLFGQPLLVRTVPPQPTEQGQKLLALLHQVEMLEEQWLGDENSGSTPLLLSLAVNADSLATWLLPALHPVLTQLPIRLNIQVEDETRTQERLRRGEVVGAISIQPQALPSCLVDQLGALDYLFVASPDFAQRYFANGVTKSSLLKAPAVAFDHLDDMHQAFLQQNFGLSPGSVPCHIVNSSEAFVQLAKQGSTCCMIPHLQIADELKSGELIDLTPGLCQRRMLYWHRFAPESRTMRKVTDALLDYGRKVLKQDEE
>NC_022000.1|WP_004244058.1|2269442_2270099_-|ribose-5-phosphate-isomerase-RpiA
MTQDELKKAVGWAALEYVKPGTIVGVGTGSTASHFIDALATMKGQIEGAVSSSEASTAKLKSYGIPVFDCNEVDSLDIYVDGADEINHQMQMIKGGGAALTREKIIAAVAKTFVCIVDESKQVDVLGKFPLPVEVIPMARSYVARELVKLGGLPEYRENVVTDNGNVILDVYNLTILNPIELENKINSIAGVVTVGLFANRGADIVLMGTSEGVKTIK
>NC_022000.1|WP_004248535.1|2267836_2269087_-|phosphoglycerate-dehydrogenase
MVKVSLEKEKIKFLLLEGVHQSAVENLRAAGYTNIEYHKGALSGEELKQAIRDARFVGIRSRTHLTEEIFAAAEKLVAVGCFCIGTNQVDLDAAARRGIPVFNAPFSNTRSVAEMVLGELLLLLRRIPEANAKAHRGIWDKQAKGCFEARGKKLGIIGYGHIGTQLGILAESVGLDVYFYDIENKLPLGNATQVRHLSELLNMCDIVSLHVPETPSTKNMIGHEELLRMKPGAILINASRGTVVDIPALAQALESKHLSGAAVDVFPTEPGANNDPNDPFVSELIKFDNVILTPHIGGSTQEAQENIGYEVAGKLAKYSDNGSTLSAVNFPEVSLPSHGDDVNRLLHIHENRPGIMNSINNVFTEENINVAAQYLRTAGNVGYVVIDVTTQTKAQAELVLQKLKGLPGTIRARMLY
>NC_022000.1|WP_004244077.1|2294311_2295739_-|dihydrolipoyl-dehydrogenase
MSTEIKAQVVVLGAGPAGYSAAFRCADLGLDTVLVERHSTLGGVCLNVGCIPSKALLHVAKVIEEAKALSEHGVVFDAPKTDIDKIRIWKDKVISQLTGGLAGMAKGRKVNVVNGEARFTGSHTLSVEGSEGTTTITFENAIVAAGSRPIELPFIPHEDPRVWDSTDALQLKTVPERLLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDVVKVFTKRISKKFNLMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPNGKLLDAGKAGIEVDDRGFIHVDKQMRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVISGKKHYFDPKVIPSIAYTEPEVAWVGMTEKEAKEKGVSYEVATFPWAASGRAIASDCADGMTKLIFDKETNRVIGGAIVGSNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLYESIGMAAEVFEGSITDLPNPKAKKKK
>NC_022000.1|WP_020946012.1|2295940_2297818_-|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase
MSIEIKVPDIGADEVEVTEVMVKVGDRIEEEQSLITVEGDKASMEVPSPQAGIVKEIKIAVGDKVETGSLIMIFDTEEGAQAPAQEAAPAPSAAAPAASELKEVHVPDIGGDEVEVTEVMVNVGDTISEEQSLITVEGDKASMEVPAPFAGVVKEIKIAVGDKVSTGSLIMVFEVAGSAPAPSASAPAPAPAASAPAASAIKDVNVPDIGGDEVEVTEVMVKVGDTIAEEQSLITVEGDKASMEVPAPFAGVVKEIKIAVGDKVKTGSLIMTFEVAGAAPAAQAPAAPAASTSAAPAPSTPAKAPASAPAAKEEFVENEAYVHATPVIRRLAREFGVNLAKVKGTGRKGRILREDVQSYVKELIKRAESAPANAGGGLPGMLPWPKVDFSKFGEIEEVELSRIQKISGANLSRNWVVIPHVNLFDEADITEVEEFRKQQNKEAEKKKLDVKITPLVFVMKAAAKALADMPRFNSSISEDGQKLILKKYINIGIAVDTPNGLVVPVFKDVNKKGILELSYELAEVSKKARAGKLTASDMQGGCFTISSLGGIGTTGFAPIVNAPEVAIMGLSRSSMKPVWNGKEFVPRLMLPMSLSFDHRVIDGADGARFITLINQYMSDLRRLVM
>NC_022000.1|WP_004244080.1|2297830_2300497_-|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MSDMLKNDVDPIETRDWLQAIDSVIREEGVERAQFLIDQVLKQARNGGLDIALGGSVHSDYINTIPVEDEPAYPGNLELERRIRSAIRWNAVMMVLRASKKDLELGGHMASYQSSATLYEVCFNHFFRAHNDNDGGDLVYFQGHISPGIYARAFLEGRLTEEQLNNFRQEIGGKGLSSYPHPKLMPEFWQFPTVSMGLGPLSAIYQAKFLKYLDHRGLKDTTKQRVYAFLGDGEMDEPESKGAITIAVREKLDNLCFVVNCNLQRLDGPVTGNGKIVNELEGIFAGAGWNVIKVMWGDRWDALLRKDTSGKLIQLMNETLDGDYQTFKSRDGAYVREHFFNRYPETAALVKDMTDDEIWALNRGGHDPKKVFAAFQKAKETKDKPTVILAQTIKGYGMGETAEGKNIAHQVKKMNMDGVKHFRDRFNIPVSDEKVAELPYITFDKDSEEYKYLHARRQELEGYLPARRTRFDEKLEIPTLEDFSQLLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDVKGQILQEGINELGAGASWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAFAYEVAVIMQDGLERMYGDKQENVYYYITTLNENYHMPAMPAGAEEGIRKGIYKLESLEGAKGKVQLLGSGSILRHVREAAQILSTEYGIGSDVYSVTSFTELARDGQDCERWNMLHPSEEPRVPYIAQIMNDAPAVASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRHHFEVDTSYVIVAALGELAKRGEIDVKVVEEAIKKYNINPEKVNPRLA
>NC_022000.1|WP_012368227.1|2300660_2301431_-|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR
MAYTKIRQPKLSDVIEQQLEHLILEGTLRPGEKLLPERELAKQFDVSRPSLREAIQKLEAKGFLLRRQGGGTFVQDNLWQSFSDPLAQLLSGHPESQFDLLETRHALEGIAAYYAALRGTDDDLERIKASHARIIDAHDKGDIAAESDAVLQYQLIVTEAAHNVVLLHLLRCMVPMLEQNIRQNFEFLYTRKEMLTAVSEHRTQIYQAIINREPEAAREASHRHLAFIEDVLLDMSREHTRRERSLRRLQQHPDLF
>NC_022000.1|WP_004250361.1|2301757_2302300_-|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD
MEIKQGWLTGVKHVPSPNYDNRPEGEIPSLLIIHNISLPPGQFGGPYIDQLFTNTLAVDDHPFFNEIAHLRVSAHCLIRRDGEIVQYVPFTARAWHAGVSFYKGREKCNDFSIGIELEGTDECDFTPQQYQQLSTLTQQLIEHYPGIKENITGHSDVAPGRKTDPGPHFNWSYYRALLAK
>NC_022000.1|WP_004244084.1|2302510_2302954_+|prepilin-peptidase-dependent-pilin
MNTLNYHSTENGFTLMELMIVIAIISILSSVAIPAYHGYIQKAALTDVLQTLSPYRSAVELCHYEHQYNQCHADASFMPQQFRSRYLTDIHVANGVISAKGKAQLEGLTIVMTPATNSKETLPHWQINCTSTNTALQTLCHKVFKSH
>NC_022000.1|WP_020946015.1|2303053_2304157_+|Flp-pilus-assembly-complex-ATPase-component-TadA
MNNTIHTATEFIEQLLRHSLAQRVSDLHLEPQQNSLRIRARIDNHLVLFSPPDNQLADEILTRLKILANINIAEKRLPQDGQFNWSYQKNNYSIRVATLPTLYGEKIVLRLMNNLQQPQLAQLGFQTIHLTLLKKYLTQPQGMILVTGPTGSGKTLTLYSCLQYLNKDNRNINSIEDPIELPLQGINQTQITEKAGITFATILRALLRQDPDVIMIGEIRDQQTAEIAIKAAQTGHLVLSTLHTNSTQATLARLANLGIAKDLIDSCVKLIISQRLVRCLCSNCKYPSPEQRNFIINNQQIILPNWQATGCQFCYSGYKGRTAIYDCFELAKQSLPSPYALFNSGIELIKKGITSLDEVYQVVGDIE
>NC_022000.1|WP_020946016.1|2304153_2305353_+|protein-transporter
MKLHFIYRYNALTYQGKWLSGNVVAQSKHEVIDQLIQQQKLPVKIRLYRVILFQNSDKQYRIQLLEQLALLLHSGLALLPALTLLKEECRYLHWQCVLNDIIFHLNQGGALSKQLSRYPLYFPANLTHFIYIGEESGKLDEVLLLQTTQLKNQRDLIKKIIKTFQYPLFLLLTLIVITISMLIYVLPEYQSLYSAFNTELPTLTLTLIRCSQWFSQYSLIILLFILIISYSYYTIKHHSAKFRDIEQRCWLNLPYLGVLLRYHQLHIIFQIMTITQQAGLPLLQGLKIITEQLTHSLYQRALTDMIAHITQGKSLSSFMRHNPLFPPICYQFISSAENSGQLQFFCQQLTHWFYHQLEERLDSVKTWLEPILMTLIALITGTLIIAMYLPVLQLGDTIH
>NC_022000.1|WP_004244087.1|2305630_2306245_+|dephospho-CoA-kinase
MTYTVALTGGIGSGKTTIANGFASLGVPLVDADVIARLVVEPDSPGLKALQQHFGDTILLPDGKLNRAQLRHIIFQNQQEKAWVNQLLHPLIQQETQKQIQQIRAPYFIWVVPLLVENKLTHLADRILVVDVTEEEQITRTMQRDGVSRDHVLKILQAQAKREQRLAVADDIIENHDNSLNQDEQIKQLHQHYLELAQKSNTGQ
>NC_022000.1|WP_004250354.1|2306247_2307000_+|cell-division-protein-ZapD
MSEETSTIIFEHPLNEKMRSWLRIENSLIQLNSFQSINSLSSALSFFRAVSEFIEVLDRGEIRAELLKELEKRQKKLQQWLSFPNVDKEIVSHIINELSESACALSKAPRIGQHLKQDKIISLVKQRLSIPGGCCSFDVPTLHLWLNLPQTVRTEKLTCWQEGLYPLQNALNALLTLIRQSDTFKPVLSHSGFYQDSTEEGELLRIKLLASQQIYPQVSGHKNRYAIRFLPLDSEHGTIPSELPFEISCC

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Crispr_ID: NC_022000_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_022000_2

3623311-3623406

Orphan

Consensus_repeat	Method
ATAGCTTAGAAAAATAAGTACTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_022000_2

>merge|NC_022000|2|3623311-3623406|CRISPRCasFinder
ATAGCTTAGAAAAATAAGTACTAATATATTTTAAAAGATAAAACAGAATATAAGTTTATTATCTTGAAATAGATAGCTTAGAAAAATAAGTGCTAA

>NC_022000|2|2|3623311-3623406|CRISPRCasFinder
ATAGCTTAGAAAAATAAGTACTAA	TATATTTTAAAAGATAAAACAGAATATAAGTTTATTATCTTGAAATAG
ATAGCTTAGAAAAATAAGTGCTAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_022000.1\|WP_004246355.1\|3629174_3629501_+\|thioredoxin-TrxA	unknown	unknown	gnl\|CDD\|181812
NC_022000.1\|WP_020946588.1\|3626244_3627753_-\|guanosine-5'-triphosphate,3'-diphosphate-diphosphatase	unknown	unknown	gnl\|CDD\|236826
NC_022000.1\|WP_004246365.1\|3616250_3617177_+\|branched-chain-amino-acid-transaminase	unknown	unknown	gnl\|CDD\|235841
NC_022000.1\|WP_041701503.1\|3631716_3632808_+\|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase	unknown	unknown	gnl\|CDD\|237913
NC_022000.1\|WP_017827031.1\|3614084_3614186_+\|ilv-operon-leader-peptide	unknown	unknown	gnl\|CDD\|170429
NC_022000.1\|WP_020946589.1\|3630062_3631322_+\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|236490
NC_022000.1\|WP_004246367.1\|3614315_3615965_+\|acetolactate-synthase-2-catalytic-subunit	unknown	unknown	gnl\|CDD\|181601
NC_022000.1\|WP_004249680.1\|3610792_3611617_-\|HTH-type-transcriptional-regulator-HdfR	unknown	unknown	gnl\|CDD\|235137
NC_022000.1\|WP_004246366.1\|3615961_3616240_+\|acetolactate-synthase-2-small-subunit	unknown	unknown	gnl\|CDD\|236862
NC_022000.1\|WP_004246363.1\|3619103_3620678_+\|threonine-ammonia-lyase,-biosynthetic	unknown	unknown	gnl\|CDD\|236417
NC_022000.1\|WP_004249670.1\|3632831_3633890_+\|ECA-polysaccharide-chain-length-modulation-protein	unknown	unknown	gnl\|CDD\|236943
NC_022000.1\|WP_004246360.1\|3623457_3623727_-\|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family	unknown	unknown	gnl\|CDD\|379750
NC_022000.1\|WP_020946582.1\|3611732_3612071_+\|DUF413-domain-containing-protein	unknown	unknown	gnl\|CDD\|236825
NC_022000.1\|WP_004253075.1\|3623727_3623976_-\|hypothetical-protein	unknown	unknown	unknown
NC_022000.1\|WP_004246362.1\|3620663_3621551_-\|HTH-type-transcriptional-activator-IlvY	unknown	unknown	gnl\|CDD\|236961
NC_022000.1\|WP_004246356.1\|3627756_3629055_-\|ATP-dependent-RNA-helicase-RhlB	unknown	unknown	gnl\|CDD\|235314
NC_022000.1\|WP_004246349.1\|3634019_3635150_+\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl\|CDD\|223458
NC_022000.1\|WP_020946585.1\|3617249_3619100_+\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|237104
NC_022000.1\|WP_004249675.1\|3621723_3623199_+\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235368
NC_022000.1\|WP_004249673.1\|3624148_3626170_+\|DNA-helicase-Rep	unknown	unknown	gnl\|CDD\|182838

Protein	Function_ID	Function_description	E-value
NC_022000.1\|WP_004246355.1\|3629174_3629501_+\|thioredoxin-TrxA	gnl\|CDD\|181812	PRK09381, trxA, thioredoxin TrxA.	1.85797e-62
NC_022000.1\|WP_020946588.1\|3626244_3627753_-\|guanosine-5'-triphosphate,3'-diphosphate-diphosphatase	gnl\|CDD\|236826	PRK11031, PRK11031, guanosine-5'-triphosphate,3'-diphosphate diphosphatase.	0
NC_022000.1\|WP_004246365.1\|3616250_3617177_+\|branched-chain-amino-acid-transaminase	gnl\|CDD\|235841	PRK06606, PRK06606, branched-chain amino acid transaminase.	0
NC_022000.1\|WP_041701503.1\|3631716_3632808_+\|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase	gnl\|CDD\|237913	PRK15119, PRK15119, UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase.	0
NC_022000.1\|WP_017827031.1\|3614084_3614186_+\|ilv-operon-leader-peptide	gnl\|CDD\|170429	PRK10424, PRK10424, ilv operon leader peptide.	0.00197669
NC_022000.1\|WP_020946589.1\|3630062_3631322_+\|transcription-termination-factor-Rho	gnl\|CDD\|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0
NC_022000.1\|WP_004246367.1\|3614315_3615965_+\|acetolactate-synthase-2-catalytic-subunit	gnl\|CDD\|181601	PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed.	0
NC_022000.1\|WP_004249680.1\|3610792_3611617_-\|HTH-type-transcriptional-regulator-HdfR	gnl\|CDD\|235137	PRK03601, PRK03601, HTH-type transcriptional regulator HdfR.	1.01527e-167
NC_022000.1\|WP_004246366.1\|3615961_3616240_+\|acetolactate-synthase-2-small-subunit	gnl\|CDD\|236862	PRK11152, ilvM, acetolactate synthase 2 small subunit.	3.08752e-35
NC_022000.1\|WP_004246363.1\|3619103_3620678_+\|threonine-ammonia-lyase,-biosynthetic	gnl\|CDD\|236417	PRK09224, PRK09224, threonine ammonia-lyase IlvA.	0
NC_022000.1\|WP_004249670.1\|3632831_3633890_+\|ECA-polysaccharide-chain-length-modulation-protein	gnl\|CDD\|236943	PRK11638, PRK11638, ECA polysaccharide chain length modulation protein.	0
NC_022000.1\|WP_004246360.1\|3623457_3623727_-\|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family	gnl\|CDD\|379750	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ. YafQ is a family of bacterial toxin ribonucleases of type II toxin-antitoxin systems. The E.coli gene is expressed from the dinB operon. The cognate antitoxin for the E. coli protein is DinJ, in family RelB_antitoxin, pfam02604.	1.15858e-41
NC_022000.1\|WP_020946582.1\|3611732_3612071_+\|DUF413-domain-containing-protein	gnl\|CDD\|236825	PRK11027, PRK11027, hypothetical protein; Provisional.	4.02914e-70
NC_022000.1\|WP_004246362.1\|3620663_3621551_-\|HTH-type-transcriptional-activator-IlvY	gnl\|CDD\|236961	PRK11716, PRK11716, HTH-type transcriptional activator IlvY.	0
NC_022000.1\|WP_004246356.1\|3627756_3629055_-\|ATP-dependent-RNA-helicase-RhlB	gnl\|CDD\|235314	PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional.	0
NC_022000.1\|WP_004246349.1\|3634019_3635150_+\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	0
NC_022000.1\|WP_020946585.1\|3617249_3619100_+\|dihydroxy-acid-dehydratase	gnl\|CDD\|237104	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional.	0
NC_022000.1\|WP_004249675.1\|3621723_3623199_+\|ketol-acid-reductoisomerase	gnl\|CDD\|235368	PRK05225, PRK05225, ketol-acid reductoisomerase; Validated.	0
NC_022000.1\|WP_004249673.1\|3624148_3626170_+\|DNA-helicase-Rep	gnl\|CDD\|182838	PRK10919, PRK10919, ATP-dependent DNA helicase Rep; Provisional.	0

>NC_022000.1|WP_004249675.1|3621723_3623199_+|ketol-acid-reductoisomerase
MANYFNTLNLRQQLSQLGKCRFMSRDEFADEANYLKGKKVVIVGCGAQGLNQGLNMRDSGLDIAYALRQEAIDEKRASWRRATENGFEVGTYEALIPQADLVVNLTPDKQHSAVVQAVQPLMKSGAALGYSHGFNIVEVGEKIRDDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDAKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCYDKMVAEGVEPGYAGKLIQFGWETITEALKQGGITLMMDRLSNPAKMRAYALSEQLKEIMAPLFAKHMDDIISGKFSETMMADWANDDKNLLTWREETGASAFENYPEYEGKISEQEYFDHGVLMVAMVKAGVELAFDTMIEAGIIAESAYYESLHELPLIANTIARKRLYEMNVVISDTAEYGNYLFSFAAVPMLKEFMTRLQSGDLAKHVPDSGTDNAQLRDINEAIRQHPIEIVGKKLRGYMTDMKKIAVAN
>NC_022000.1|WP_004246362.1|3620663_3621551_-|HTH-type-transcriptional-activator-IlvY
MDIRDLKLFLHLAESCHFTKTAQAMHVSPSTLSRQIQRLEEQLGHPLFLRDNRQVTLTDAGEQLKRYAQHTLLQYKQLKHTLNQNSPSLSGELRLFCSVTAAYSHLPPILDRFRAENPLVEIKLTTGDAADAVDKVISDEADLGIAGKPEKLPENICFEKIGEIPLVLIAPALPGNVRHLATQEKPDWLNIPFIIPEHGPSRQRIALWFKRHRIQNPLIYATVSGHEAIVSMVALGCGIALIPQVVVDNCPEPVRNRISLLDNISLVEPFELGVCGLHKRLQEPVISAFWRLLHH
>NC_022000.1|WP_004246363.1|3619103_3620678_+|threonine-ammonia-lyase,-biosynthetic
MAAFRPLTSAPSSAEYLKAALSAPVYEAAVVTPLQEMAKISQRLENTILVKREDRQPVHSFKLRGAYNMIAGLTPEQKAKGVVTASAGNHAQGVALSANRMGVKALIVMPIATADIKVDAVRQFGGEALLYGANFDEAKAKAIALAKEMGYTFVPPFDHPAVIAGQATLAMELLQQDVHLDRIFVPVGGGGLIAGVAVLIKQLMPEIKIIGVEAEDAACLKAALEAGHPVELPRVGLFAEGVAVKRIGDETFRLCQKYVDDVITVDSDAICAAVKDLFEDVRAIAEPSGALALAGLKKYVEEHQIKGERLAHVLSGANVNFHGLRYVSERCELGEKREALFAVTIPEQKGSFLRFCQILGQRVVTEFNYRYSDADPENARIFVGVRLSQGLQERKEIVQQLTEAGYQVSDLSDDEMAKLHVRYMVGGRPNQPLKERLFSFEFPEAPGALMKFLKTLGTYWNITLFHYRSHGTDYGRVLVAFELPETEGRFERHLDALGYEYHDETGNPSFQLFLSPQTASLVVE
>NC_022000.1|WP_020946585.1|3617249_3619100_+|dihydroxy-acid-dehydratase
MPKYRSATTTHGRNMAGARALWRATGMTDADFGKPIIAVVNSFTQFVPGHVHLRDLGKLVAEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCISNCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQLIKLDLVDAMIQGANPNVSDADSEQIERSACPTCGSCSGMFTANSMNCLTEALGLSQPGNGSLLATHADRKTLFINAGKRIVELTKRYYEQDDLSALPRNIAKKEAFENAMILDIAMGGSTNTVLHLLAAAQEGDVDFKMEDIDRLSRQVPHLCKVAPSTQKYHMEDVHRAGGVMGILGELDKAGLLNRNVNNILGLSLPETLAQYDVMLSQDEQVKSMYQAGPAGIRTTKAFSQDCRWPTLDTDREQGCIRSKAHAYSQDGGLAVLSGNLAQDGCIVKTAGVDEDNLVFSGPAKVYESQDDAVEAILGGKVVAGDVVIIRYEGPKGGPGMQEMLYPTSYLKSMGLGKACALITDGRFSGGTSGLSIGHVSPEAANGGIIGLVEEGDIVDINIPNREINLRVDEKTLAARREAQLARGDKAWTPKDRQRQVSFALRAYASLATSADKGAVRDKSKLGG
>NC_022000.1|WP_004246365.1|3616250_3617177_+|branched-chain-amino-acid-transaminase
MTKQADYIWFNGEMVPWAEAKVHVMSHALHYGTSVFEGVRCYDSHKGPVVFRHREHMQRLHDSAKIYRMPVAQSVDELMEACRETLRKNQLVSAYIRPLVFIGDVGMGVNPPEGYKTDIIIAAFPWGAYLGEEALDKGIDAMVSSWHRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDVHGYLSEGAGENLFEVKDGVIFTPPFTSSALPGITRDAIIKLAKDLGYEIREQVLSRESLYLADEVFMSGTAAEITPVRSVDGIQVGIGRCGPVTKAIQKAFFGLFTGETEDKYGWLDPVNP
>NC_022000.1|WP_004246366.1|3615961_3616240_+|acetolactate-synthase-2-small-subunit
MNQHNITIEARFCPEILERILRVIRHRGFHICSMNMNITESNYINLALTVSSQRPVDLLCSQLTKLADVAGIQVLHQQQKEKLQFISALSAM
>NC_022000.1|WP_004246367.1|3614315_3615965_+|acetolactate-synthase-2-catalytic-subunit
MNGAQWLVQALRKQRVETVFGYPGGAIMPVYDALYDGGVEHVLCRHEQGAAIAAIGFARSTGTTGVCIATSGPGATNVITGLADALLDSVPVVAITGQVASNLIGTDAFQEVDVLGLSLACTKHSFLVSDVNELPRVVSEAFSIAKQGRPGPVLIDITKDVQLADASHLADYPLPQEQEFPYPEHEIAQALQMLAQAKKPILYVGGGVAMSQGVEALRSFVKQTQIPVVSTLKGLGCANAFDANYLGMLGMHGTKAANYAVQRSDLLIAVGARFDDRVTGRLNTFAPNAKVIHIDIDYAELNKLKQAHIALLGDAKVLLPKLSQPLAIEAWQEEVQQLIAEYAWRYDHPGEAIYAPLLLKQLSDAKPENSIVTTDVGQHQMWSAQHMTFDAPENFITSSGLGTMGFGIPAAIGAQIARPDACVICVSGDGSFMMNVQELGTIKRKQLPIKLVLLDNQRLGMVRQWQELFFEQRYSETILTDNPDFVALAKAFDIPGQRITEKAQVAEAIKCLLTSDGPYLLQVSIDDAENVWPLVPPGASNDEMMEKSK
>NC_022000.1|WP_017827031.1|3614084_3614186_+|ilv-operon-leader-peptide
MNTIVLVISLIIVSVVVIINPLCGAALGRRKAN
>NC_022000.1|WP_020946582.1|3611732_3612071_+|DUF413-domain-containing-protein
MAESFITTNRFFDNKHYPRGFSRHGDFTIKEAQILERHGQAFNELDLGKREPVTEAEKLFVAMCRGEREAATVEEKIWKKYTSRISRPKRFHTLSGGKPQLDPSDDYTDSDD
>NC_022000.1|WP_004249680.1|3610792_3611617_-|HTH-type-transcriptional-regulator-HdfR
MDTELLKTFLEVSKTRHFGRAAESLYLTQSAVSFRIRQLETQLGTNLFTRHRNNIRLTLAGERLIPYAESLMNTWLQAKKEISHASQHSELSIGATASLWDAYLTSWLQEAYLERNELRIESRVSTRQSLVKQLHARELDLLFTTEAPKMDELESKVIGNITFQLMKRASHLNQQSAQFIKIEWSADLSPLSQNSSAPKTEPILTTNSAMIAYQLMKTTNAVAFLPTHWLDLYPDLSPAAVEIIQKPLFAVWLNTSDQQVLIQQLLSQPVSNHQ
>NC_022000.1|WP_004246360.1|3623457_3623727_-|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family
MRKVSYSGQFKKDLKLAEKRGKDINKLKEIILLLVQGKRLPAQLKDHPLTGNWKPRRDLHIEPDWLLIYKIDNDTVHFDRTGSHSDLFK
>NC_022000.1|WP_004253075.1|3623727_3623976_-|hypothetical-protein
MSIKSELIATKVDIELKEAFVAIARNKHRPASQILRDLIRVYVESNQTQPNEKTLNTFAKTDKGDDVFYAEDAHDLFKKLDI
>NC_022000.1|WP_004249673.1|3624148_3626170_+|DNA-helicase-Rep
MRLNPGQQKAVEYVSGPCLVLAGAGSGKTRVITNKIAYLIRQCRYSAKQIAAVTFTNKAAREMKERVAQTLGKQEAKGLMISTFHTLGLEIIKREYKALGIKSNFSLFDDQDQSALLKELTVDLLEEDKDLLSQLKSQISNWKNDMLTPEQVIGRAQSQQDHTFAECFRRYEQHLLSCNVLDFDDLISKPTLLLRTNEEVRARWQQRIRYLLVDEYQDTNTSQYELVKWLVGERARFTVVGDDDQSIYSWRGARPQNLVLLQKDFPQLNVIKLEQNYRSSGRILKSANILIENNPHVFEKRLFSELGYGDELRVLTANNEEHEAERVAGELIAHHFINKTNYKDYAILYRGNHQSRIFEKYLMQNRIPYRISGETSFFSREEIKDILAYLRVITNPDDDAAFLRIVNKPRREIGPMTIQKLGEWAKVRDKSLFNACFDLGLSQTLTGRGLSALQAFSQWMARIVQQSEREPLLAVRDLLHEMDYESWLYETSSSAKAAEMRMKNINQLFSWMSEMLEGDELHEPMTLSQVVNRFTLRDMMERGETDEELDQVQLMTLHASKGLEFPHVFLVGMEEGILPHQSSIDEDNVEEERRLAYVGITRAQKTLTFTLCKERRQYGELIRPEPSRFLYELPQDDLHWDTNKKKVLSAQEKQEKGQKGVAGLKAMLARHKP
>NC_022000.1|WP_020946588.1|3626244_3627753_-|guanosine-5'-triphosphate,3'-diphosphate-diphosphatase
MLKSSSLYAAIDLGSNSFHMLVVREIAGSIQVLSRVKRKVRLAAGLNKENELSEQAMERGWQCLRLFSEYLRDIPAEQIRVVATATLRIAKNADIFVAKASEILGNTVHVISGEEEARLIYRGVAHTTGGAEQRLVVDIGGGSTELVTGTGAKTTQLMSLSMGCVTWLERYFSDRSLTEENFAQAQQAAKAILAPVAEKLIQQGWQVCVGASGTVQALQEIMIAQGMDELITLPKLERLKQKAIECGKLEELEIEGLTFERALVFPSGLAILIAIFETLHIENMILAGGALREGLVYGMLHLSIEQDIRQRTLRNIQRRFQIDIEQAHRVQQLAEHFFIQVSKSWQLDNRCRELLSSACALHEIGLSVDFRQAPSHASYLVSHLDLPGYTPAQRRLIASFLRNQKGIIDLAPLNQQNALPINQAYRLVRLLRLAIIFASRRRDDTLPALRLRTEDEKLIITLPHQWIAEHPLRAENLHEEIQLQSYVHWPLMLEEQNNSRIG
>NC_022000.1|WP_004246356.1|3627756_3629055_-|ATP-dependent-RNA-helicase-RhlB
MSKTYLTEKKFSDFALHPKVIEALEKKGFSNCTQIQALTLPITVKGHDIAGQAQTGTGKTLAFLTSTFHYLLTHPAKEGHEKNQPRALIMAPTRELAVQIYTDAQPLAQSTGVKMGLAYGGDGYDEQLKVLNNGVDIVIGTTGRLIDYVKQGHINLNAIQVVVLDEADRMYDLGFIKDIRWLFRRMPNAAERMNMLFSATLSYRVRELAFEQMNNPEYVEVEPEQKTGFSIKEELFYPSNEEKMRLLQTLIEEEWPERCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVPQKKRLRILEDFTQGNIDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGKSGNSISLACEEYALNLPAIETYIQHAIPVSKYNSDALLTDLPEPKRRHRPRQGQPRRNNSAPRRGNNTQRNNRNKRPSHS
>NC_022000.1|WP_004246355.1|3629174_3629501_+|thioredoxin-TrxA
MSDKILHLSDNTFDVDVLQATGPVLVDFWAEWCGPCKMIAPILDEVATEYAGKLTVAKLNIDENPATAPKYGIRGIPTLILFKNGAVAATKVGALSKTQLKEFLDENI
>NC_022000.1|WP_020946589.1|3630062_3631322_+|transcription-termination-factor-Rho
MNLTELKNTPVSELIALGENMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKEGERYFALLKVNEVNFGKPENARSKILFENLTPLHANNRLRMERGNGSTEDLTARVLDLAAPIGRGQRGLIVAPPKAGKTMLLQNIAANIAHNYPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTSQDELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNEEFFDFMKRS
>NC_022000.1|WP_041701503.1|3631716_3632808_+|UDP-N-acetylglucosamine--undecaprenyl-phosphate-N-acetylglucosaminephosphotransferase
MDILKMSTNVFYVFLFSFAFLFIARKVAKKIGLVDKPNYRKRHHGLIPLVGGISVYFGIVFAFYVSDIYIPHKELYLICAGILVFIGALDDRYDISVKIRATIQALVGIAMMVFGGLKLESLGHAFGPWDMHLGPFGYIVTLFAVWAAINAFNMVDGIDGLLGGLSCVSFGALGILLYQSGSSALAFWCFSFIAAILPYIMLNLGVCGKKFKVFMGDAGSTLIGFTIIWLLISSTQVDPHPINAVTALWIIAIPLMDMVAIMYRRLRKGMSPFSPDRQHIHHLIMRAGFTPRQAFVLITLAAAVLAAIGIIGENLSFVPEWVMLALFLLAFVMYGYCIKRAWRVARFIKRYKRRLRKATQLKH
>NC_022000.1|WP_004249670.1|3632831_3633890_+|ECA-polysaccharide-chain-length-modulation-protein
MNSENNVSRQGFSPDNELDIRGLCCALWSGKRWIIGFALLFALIALGASYLMQPKWSAIAMTERPTVNNLGSYYSQSQFLRNLDTQINPSVTVSQLSIPDEAYQEFVTQISAFDTRREFWLQTDYYKQRKENDAQADAALLDELINNIQFTPADEKKLVNDQLKLIAETANDSSQLLNEYIAFANKRAAEHLNEEVIAAWATRTQSMKALVKRQEMAAQAAYQRQINLLKQSIKVAEKQGISQKQTSIAIDELPDSKLFLLGVPLLQSQLETLMATGPDFDSDYDQNTAMLSTLAVGAKLQDNFQTYRFLRTPEDPVKRDSPRRAFMMVLWGAIGVLVGAGVALVRRSSLKK
>NC_022000.1|WP_004246349.1|3634019_3635150_+|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MKVLTVFGTRPEAIKMAPLVHALANDDSFEAKVCVTAQHREMLDQVLNLFEIKPDYDLNIMKPGQDLTDITCRILEGLKPVLASFQPDVVLVHGDTTTTMAASLAAFYQQIPVGHVEAGLRTGNLYSPWPEEANRTIAGHLAMYHFAPTETAKLNLVREAVADKNIFVTGNTVIDALFWVSERVMGNQTLLDELAVQYPFIQPERKMILVTGHRRESFGGGFERICQALAEIALAHPDVEVVYPVHLNPNVSEPVKRILHGINNIKLIQPQDYLPFVYLMNHAYLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVEAGSVRLVGTDTKRIVSEVTSLLTDENAYHQMSKATNPYGDGHACQRILEALKNNQVTL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

646050 : 657404

Mycobacterium_phage(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004246075.1\|646050_647250_-	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	3.8e-28	37.6
WP_004247427.1\|647858_648827_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	3.5e-133	71.0
WP_004252248.1\|648852_650979_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	1.5e-205	51.3
WP_020945334.1\|651007_651412_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	R4JF54	Bacillus_phage	3.7e-12	38.5
WP_004246071.1\|651423_651648_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	1.4e-13	47.9
WP_017827772.1\|651929_652403_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
WP_004246068.1\|652600_652810_+	transcription antiterminator/RNA stability regulator CspE	A0A1W6JNX5	Morganella_phage	5.9e-22	74.2
WP_004246058.1\|653267_653642_-	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	2.7e-25	52.0
WP_004246057.1\|653657_654623_-	lipoyl synthase	NA	NA	NA	NA
WP_004246056.1\|654724_655369_-	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_026090527.1\|655730_655994_-	YbeD family protein	NA	NA	NA	NA
WP_004246054.1\|656192_657404_-	D-alanyl-D-alanine carboxypeptidase DacA	B6DZZ7	Stx2-converting_phage	8.6e-105	49.1

DBSCAN-SWA_2

857584 : 936604

Bacillus_phage(17.65%)

plate,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004244558.1\|857584_857899_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.5e-13	44.1
WP_004244559.1\|857929_860224_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.3e-170	42.9
WP_004244560.1\|860343_860562_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_020945406.1\|860881_861574_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_020945407.1\|861575_863327_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.8e-18	31.2
WP_020945408.1\|863329_865099_-	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	3.0e-21	23.5
WP_004252032.1\|865240_866200_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.4e-64	45.5
WP_004244566.1\|866742_867237_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_020945409.1\|867364_871207_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.7e-90	49.3
WP_004244569.1\|871318_871924_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_012367706.1\|871934_873284_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.8e-79	40.6
WP_004244571.1\|873417_874707_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.1e-97	46.2
WP_004252020.1\|874886_875219_-	hypothetical protein	NA	NA	NA	NA
WP_020945410.1\|875617_876667_+	ureidoglycolate dehydrogenase	NA	NA	NA	NA
WP_020945411.1\|876739_877645_-	hypothetical protein	NA	NA	NA	NA
WP_004244575.1\|878004_878745_-	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	2.3e-20	27.0
WP_004244576.1\|878852_881135_-	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.0e-159	41.6
WP_004244577.1\|881189_882044_-	formate transporter FocA	NA	NA	NA	NA
WP_036894537.1\|882713_884471_-	30S ribosomal protein S12 methylthiotransferase accessory factor YcaO	NA	NA	NA	NA
WP_020945413.1\|884698_885736_+	L-asparaginase 2	NA	NA	NA	NA
WP_020945414.1\|885810_887085_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_020945415.1\|887221_888652_-	MFS transporter	A0A0M3UL24	Mycobacterium_phage	3.4e-07	24.6
WP_020945416.1\|888788_889877_+	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	5.7e-84	47.0
WP_004252010.1\|890073_891360_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_020945417.1\|891648_892326_+	(d)CMP kinase	NA	NA	NA	NA
WP_004244586.1\|892507_894181_+	30S ribosomal protein S1	NA	NA	NA	NA
WP_004244587.1\|894245_894533_+	integration host factor subunit beta	A7KV42	Bacillus_phage	8.4e-11	40.0
WP_020945418.1\|894975_897345_+	DNA internalization-related competence protein ComEC/Rec2	Q0H255	Geobacillus_phage	3.6e-22	29.7
WP_004244589.1\|897381_899127_+	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	8.4e-61	30.9
WP_012367713.1\|899123_900125_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_004247631.1\|900620_900836_+	cold shock domain-containing protein	NA	NA	NA	NA
WP_004244593.1\|901250_901430_+	hypothetical protein	NA	NA	NA	NA
WP_004244594.1\|901434_902196_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_020945420.1\|902318_903149_-	envelope biogenesis factor ElyC	NA	NA	NA	NA
WP_004244596.1\|903528_904302_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_004244597.1\|904311_905634_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_004247634.1\|905614_906346_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_020945421.1\|906342_910800_+	chromosome partition protein MukB	NA	NA	NA	NA
WP_020945422.1\|911081_911735_-	type A chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	1.2e-100	79.4
WP_041701075.1\|912140_912854_+	acid phosphatase AphA	NA	NA	NA	NA
WP_020945424.1\|913196_914912_+	L,D-transpeptidase	NA	NA	NA	NA
WP_004244605.1\|915243_915792_+	YcbK family protein	NA	NA	NA	NA
WP_004247640.1\|915841_916492_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_004244607.1\|916584_917058_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_020945425.1\|917148_918885_-	TssP	NA	NA	NA	NA
WP_020945426.1\|918877_920233_-	TssO	NA	NA	NA	NA
WP_020945427.1\|920270_923819_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_004244611.1\|923821_925285_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_004244612.1\|925290_925941_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_020945428.1\|925942_926731_-	TssK	NA	NA	NA	NA
WP_020945429.1\|926734_929446_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.1e-83	30.5
WP_004244617.1\|929454_930210_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_017628433.1\|930202_931570_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004244619.1\|931562_932114_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004247648.1\|932115_933384_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_004244621.1\|933388_934426_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_017628432.1\|934389_936165_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004244624.1\|936172_936604_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_3

1011814 : 1051665

Burkholderia_phage(25.0%)

lysis,terminase,integrase

attL 1003114:1003128|attR 1024340:1024354

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1003114:1003128	attL	NA	NA	NA	NA
WP_020945458.1\|1011814_1012660_-	AAA family ATPase	A0A1X9IGI7	Lactococcus_phage	9.8e-31	32.5
WP_020945459.1\|1012749_1013928_-\|integrase	site-specific integrase	A0A2H4J1K3	uncultured_Caudovirales_phage	4.7e-31	30.1
WP_020945460.1\|1013929_1014142_-	hypothetical protein	NA	NA	NA	NA
WP_004250516.1\|1014754_1014934_-	hypothetical protein	NA	NA	NA	NA
WP_020945462.1\|1014981_1015482_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	3.6e-41	57.0
WP_020945463.1\|1015481_1017446_-	hypothetical protein	H9C157	Pectobacterium_phage	2.2e-118	38.0
WP_004250523.1\|1017458_1017719_-	hypothetical protein	A0A1B1W282	Salmonella_phage	7.9e-08	45.3
WP_004250525.1\|1017718_1018051_-	hypothetical protein	H9C158	Pectobacterium_phage	1.6e-05	39.2
WP_004250527.1\|1018507_1019266_-	helix-turn-helix transcriptional regulator	A0A0M3LPF9	Mannheimia_phage	1.5e-27	39.0
WP_004250529.1\|1019370_1019628_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020945464.1\|1019668_1020124_+	hypothetical protein	H9C162	Pectobacterium_phage	9.9e-30	55.4
WP_004250533.1\|1020141_1020366_+	hypothetical protein	H9C163	Pectobacterium_phage	9.5e-18	55.4
WP_020945465.1\|1020367_1021198_+	hypothetical protein	I6NW17	Burkholderia_virus	4.9e-35	51.6
WP_041701082.1\|1021187_1022606_+	AAA family ATPase	H9C165	Pectobacterium_phage	1.4e-170	61.2
WP_041701083.1\|1022660_1022837_+	hypothetical protein	NA	NA	NA	NA
WP_041701085.1\|1022839_1023073_+	hypothetical protein	NA	NA	NA	NA
WP_020945467.1\|1023069_1023234_+	hypothetical protein	NA	NA	NA	NA
WP_020945468.1\|1023673_1024498_-	hypothetical protein	NA	NA	NA	NA
1024340:1024354	attR	NA	NA	NA	NA
WP_041701086.1\|1024617_1025211_+	DUF1367 family protein	K7PKS6	Enterobacteria_phage	4.3e-57	54.7
WP_020945470.1\|1025222_1025534_+	DUF968 domain-containing protein	A0A1I9KFA7	Aeromonas_phage	6.5e-33	66.7
WP_020945471.1\|1025568_1026120_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	3.2e-30	44.3
WP_051175908.1\|1026132_1026564_+	hypothetical protein	NA	NA	NA	NA
WP_041701088.1\|1026678_1027047_-	hypothetical protein	NA	NA	NA	NA
WP_004250558.1\|1027127_1027397_+	hypothetical protein	A0A2H4FNF0	Salmonella_phage	3.3e-17	47.8
WP_004250560.1\|1027396_1027867_+	lysozyme	A0A1W6JNW4	Morganella_phage	1.1e-47	57.5
WP_004250565.1\|1028009_1028471_+\|lysis	lysis protein	A0A2H4JHL8	uncultured_Caudovirales_phage	8.5e-13	34.0
WP_020945474.1\|1028960_1029971_+\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	1.1e-36	37.0
WP_082229490.1\|1030421_1031783_+	TerL protein	A9YWZ6	Burkholderia_phage	2.4e-156	61.6
WP_020945476.1\|1031787_1033290_+	DUF1073 domain-containing protein	A0A2H4P6S9	Pseudomonas_phage	1.6e-100	42.6
WP_020945477.1\|1033327_1034041_+	hypothetical protein	A0A2H5BG15	Pseudoalteromonas_phage	1.0e-33	35.6
WP_020945478.1\|1034037_1035297_+	DUF2213 domain-containing protein	Q6IWU4	Burkholderia_phage	1.2e-45	51.3
WP_020945479.1\|1035296_1035794_+	hypothetical protein	NA	NA	NA	NA
WP_041701089.1\|1035793_1036861_+	DUF2184 domain-containing protein	A0A088C493	Shewanella_sp._phage	2.8e-51	38.9
WP_004250579.1\|1036930_1037272_+	hypothetical protein	Q6IWU7	Burkholderia_phage	2.7e-08	33.6
WP_004250580.1\|1037274_1037706_+	DUF4054 domain-containing protein	Q6IWU8	Burkholderia_phage	7.4e-11	31.0
WP_020945483.1\|1037705_1038164_+	hypothetical protein	Q6IWU9	Burkholderia_phage	1.1e-12	38.6
WP_020945484.1\|1038163_1038535_+	hypothetical protein	NA	NA	NA	NA
WP_020945485.1\|1038521_1039037_+	hypothetical protein	NA	NA	NA	NA
WP_020945486.1\|1039045_1040533_+	DUF3383 domain-containing protein	A0A088C3U1	Shewanella_sp._phage	3.9e-83	38.1
WP_004250586.1\|1040543_1040996_+	hypothetical protein	I7ATP4	Escherichia_phage	5.8e-22	38.1
WP_004250588.1\|1041036_1041495_+	hypothetical protein	Q6IWV4	Burkholderia_phage	6.7e-26	48.5
WP_020945487.1\|1041578_1043930_+	phage protein	A0A2H5BG44	Pseudoalteromonas_phage	6.3e-19	26.2
WP_020945488.1\|1043926_1044454_+	hypothetical protein	NA	NA	NA	NA
WP_020945489.1\|1044453_1044771_+	hypothetical protein	Q6IWP9	Burkholderia_phage	3.3e-08	32.3
WP_041701090.1\|1044736_1045552_+	hypothetical protein	A1Z005	Burkholderia_virus	7.0e-10	25.6
WP_020945491.1\|1045554_1046247_+	hypothetical protein	A0A2H4P6V3	Pseudomonas_phage	1.7e-28	40.1
WP_004250600.1\|1046243_1046588_+	hypothetical protein	NA	NA	NA	NA
WP_020945492.1\|1046580_1047768_+	phage protein	Q6IWQ3	Burkholderia_phage	2.6e-69	40.3
WP_020945493.1\|1047764_1048421_+	DUF2612 domain-containing protein	Q6IWQ4	Burkholderia_phage	9.9e-39	40.9
WP_020945495.1\|1049781_1051665_-	acyltransferase	A0A193GZ69	Enterobacter_phage	1.9e-71	47.8

DBSCAN-SWA_4

1373298 : 1383290

Escherichia_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004242885.1\|1373298_1375356_-	potassium-transporting ATPase subunit KdpB	E4ZFI9	Streptococcus_phage	4.8e-31	26.1
WP_004248043.1\|1375367_1377068_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA
WP_004242887.1\|1377403_1378090_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_004242888.1\|1378089_1378551_+	nucleoside deaminase	S4VYZ2	Pandoravirus	7.0e-15	34.6
WP_004242890.1\|1378603_1379215_-	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	7.3e-28	39.1
WP_004242891.1\|1379354_1380215_-	dimethyl sulfoxide reductase anchor subunit	A0A077SK59	Escherichia_phage	3.7e-25	35.5
WP_004242892.1\|1380216_1380834_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	2.2e-72	58.6
WP_020945635.1\|1380845_1383290_-	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	3.3e-220	50.4

DBSCAN-SWA_5

1722724 : 1762350

Escherichia_phage(29.03%)

holin,terminase,integrase

attL 1753985:1754001|attR 1769604:1769620

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004250905.1\|1722724_1723504_-	nucleotidyltransferase domain-containing protein	A0A2D1GQQ2	Pseudomonas_phage	1.4e-31	39.3
WP_020945793.1\|1723882_1724377_-	hypothetical protein	NA	NA	NA	NA
WP_020945794.1\|1724376_1724721_-	M15 family peptidase	F1BUL3	Cronobacter_phage	7.7e-43	84.3
WP_041701157.1\|1724723_1724996_-\|holin	phage holin family protein	T1SA10	Salmonella_phage	8.5e-13	38.9
WP_020945795.1\|1724992_1725364_-	hypothetical protein	G9L6E6	Escherichia_phage	3.9e-16	39.1
WP_020945796.1\|1725455_1727453_-	acyltransferase	C6ZR20	Salmonella_phage	1.1e-61	32.5
WP_020945797.1\|1727648_1729823_-	hypothetical protein	G9L6E4	Escherichia_phage	8.8e-68	53.1
WP_041701158.1\|1729996_1730248_+	hypothetical protein	NA	NA	NA	NA
WP_020945798.1\|1730604_1731309_+	Rha family transcriptional regulator	S5MQL6	Escherichia_phage	6.9e-30	63.1
WP_020945799.1\|1731339_1731879_-	hypothetical protein	NA	NA	NA	NA
WP_051175910.1\|1731880_1732168_-	hypothetical protein	A0A2R9YJP3	Escherichia_phage	6.7e-08	36.2
WP_020945800.1\|1732164_1735542_-	hypothetical protein	A0A2I7RY58	Vibrio_phage	2.0e-183	36.2
WP_041701161.1\|1735541_1738625_-	hypothetical protein	T1SBJ1	Salmonella_phage	2.2e-165	51.2
WP_020945802.1\|1738627_1739176_-	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	5.9e-45	59.6
WP_041701162.1\|1739175_1739664_-	hypothetical protein	A0A0F6R7N6	Escherichia_coli_O157_typing_phage	2.1e-49	59.9
WP_020945804.1\|1739647_1742110_-	hypothetical protein	A0A0F6TJD3	Escherichia_coli_O157_typing_phage	0.0e+00	69.8
WP_020945805.1\|1742109_1742715_-	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	5.1e-66	60.7
WP_020945806.1\|1742714_1743026_-	hypothetical protein	Q858G5	Salmonella_phage	8.8e-14	38.5
WP_020945807.1\|1743089_1743431_-	hypothetical protein	NA	NA	NA	NA
WP_020945808.1\|1743439_1743871_-	hypothetical protein	A0A193GYT9	Enterobacter_phage	2.5e-30	54.1
WP_004243350.1\|1743929_1744910_-	hypothetical protein	G9L6C5	Escherichia_phage	6.5e-111	59.4
WP_020945809.1\|1744925_1745603_-	hypothetical protein	T1SAP9	Salmonella_phage	8.9e-43	63.6
WP_020945810.1\|1745620_1745935_-	hypothetical protein	NA	NA	NA	NA
WP_020945811.1\|1745931_1747596_-	hypothetical protein	A0A193GYI4	Enterobacter_phage	9.1e-198	65.4
WP_020945812.1\|1747605_1747815_-	hypothetical protein	NA	NA	NA	NA
WP_004243357.1\|1748000_1749485_-	hypothetical protein	G9L6B8	Escherichia_phage	9.5e-231	77.8
WP_036900160.1\|1749484_1750054_-\|terminase	terminase small subunit	G9L6B7	Escherichia_phage	2.0e-43	50.3
WP_020945814.1\|1750092_1750659_-	hypothetical protein	NA	NA	NA	NA
WP_020945815.1\|1750677_1751019_-	hypothetical protein	H9C172	Pectobacterium_phage	4.3e-30	59.0
WP_041701163.1\|1751011_1751371_-	DUF2591 family protein	NA	NA	NA	NA
WP_041701164.1\|1751493_1751889_-	RusA family crossover junction endodeoxyribonuclease	G8C7V6	Escherichia_phage	1.2e-34	60.9
WP_020945818.1\|1751885_1752299_-	hypothetical protein	NA	NA	NA	NA
WP_020945819.1\|1752521_1753004_-	hypothetical protein	NA	NA	NA	NA
WP_020945820.1\|1752972_1753926_-	hypothetical protein	G9L6A8	Escherichia_phage	1.9e-54	48.8
1753985:1754001	attL	NA	NA	NA	NA
WP_020945821.1\|1754264_1754510_-	hypothetical protein	NA	NA	NA	NA
WP_004243373.1\|1754620_1755229_+	hypothetical protein	A0A0F6R8L7	Escherichia_coli_O157_typing_phage	1.5e-28	35.4
WP_041701166.1\|1755625_1757350_+	DNA breaking-rejoining protein	H6WRX1	Salmonella_phage	2.6e-107	51.5
WP_020945824.1\|1757395_1758436_+	recombinase RecT	H6WRX0	Salmonella_phage	1.4e-100	50.7
WP_020945825.1\|1758480_1758735_+	AlpA family phage regulatory protein	A0A2H4J8C8	uncultured_Caudovirales_phage	1.6e-05	39.6
WP_020945826.1\|1758963_1759479_+	hypothetical protein	NA	NA	NA	NA
WP_020945827.1\|1759478_1760036_+	hypothetical protein	NA	NA	NA	NA
WP_020945828.1\|1760110_1760758_+	hypothetical protein	I6PDF5	Cronobacter_phage	3.9e-72	61.1
WP_020945829.1\|1760760_1760958_+	hypothetical protein	A0A1P8DTH3	Proteus_phage	3.7e-18	63.5
WP_041701167.1\|1761153_1762350_-\|integrase	tyrosine-type recombinase/integrase	T1S9J3	Salmonella_phage	1.1e-139	61.9
1769604:1769620	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1959467 : 1967230

Pseudoalteromonas_phage(16.67%)

lysis,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020945911.1\|1959467_1961771_-	hypothetical protein	A0A2H5BG44	Pseudoalteromonas_phage	1.1e-15	23.3
WP_004243627.1\|1961853_1962312_-	hypothetical protein	Q6IWV4	Burkholderia_phage	1.9e-25	48.5
WP_012368088.1\|1962371_1962824_-	hypothetical protein	NA	NA	NA	NA
WP_020945912.1\|1962834_1964322_-	DUF3383 domain-containing protein	A0A088C3U1	Shewanella_sp._phage	1.4e-77	35.7
WP_012368090.1\|1964330_1964843_-	hypothetical protein	NA	NA	NA	NA
WP_004250710.1\|1964879_1965329_-\|lysis	lysis protein	NA	NA	NA	NA
WP_020945913.1\|1965325_1965730_-	phage protein	A0A0A0RQM4	Escherichia_phage	2.2e-25	48.6
WP_004248367.1\|1965732_1966032_-\|holin	phage holin, lambda family	A0A1P8DTE4	Proteus_phage	1.9e-21	51.0
WP_020945914.1\|1966414_1967230_-	antitermination protein	M9NZB0	Enterobacteria_phage	2.1e-54	43.4

DBSCAN-SWA_7

2433296 : 2469657

Klebsiella_phage(17.39%)

lysis,portal,terminase,tail,capsid,protease,head,integrase

attL 2429077:2429093|attR 2464061:2464077

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2429077:2429093	attL	NA	NA	NA	NA
WP_020946061.1\|2433296_2434523_+\|integrase	site-specific integrase	A0A248SL35	Klebsiella_phage	3.3e-35	29.9
WP_020946062.1\|2435458_2436004_+	uroepithelial cell adherence major pilin UcaA	NA	NA	NA	NA
WP_041701675.1\|2436069_2436795_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_020946064.1\|2436804_2439339_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_020946065.1\|2439348_2440431_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_051175911.1\|2440531_2440873_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020946067.1\|2440858_2441860_-	hypothetical protein	NA	NA	NA	NA
WP_020946070.1\|2445639_2446038_-	hypothetical protein	A0A059VK01	Pseudomonas_phage	9.2e-32	47.0
WP_041701214.1\|2446135_2446447_-	hypothetical protein	NA	NA	NA	NA
WP_020946072.1\|2446479_2447061_-	hypothetical protein	Q7Y3Z7	Yersinia_phage	1.5e-51	49.5
WP_020946073.1\|2447060_2447657_-	hypothetical protein	S4TSP7	Salmonella_phage	4.6e-51	52.8
WP_020946074.1\|2447657_2450933_-\|tail	phage tail tape measure protein	B7SE05	Pseudomonas_virus	2.2e-54	47.1
WP_004242485.1\|2451059_2451251_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA
WP_041701216.1\|2451275_2451554_-	DUF4035 domain-containing protein	NA	NA	NA	NA
WP_041701217.1\|2451550_2451967_-	hypothetical protein	NA	NA	NA	NA
WP_041701219.1\|2452031_2452697_-	hypothetical protein	NA	NA	NA	NA
WP_020946078.1\|2452706_2453048_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_041701220.1\|2453053_2453527_-	hypothetical protein	A0A0R6PHU8	Moraxella_phage	5.7e-12	30.9
WP_020946080.1\|2453516_2453846_-\|head	phage head closure protein	NA	NA	NA	NA
WP_020946081.1\|2453845_2454145_-	phage protein	K7PKV5	Enterobacterial_phage	2.8e-33	63.3
WP_020946082.1\|2454183_2455350_-\|capsid	phage major capsid protein	F1C582	Cronobacter_phage	1.6e-169	79.5
WP_020946083.1\|2455353_2456022_-\|head,protease	HK97 family phage prohead protease	K7PM91	Enterobacterial_phage	1.9e-82	65.3
WP_020946084.1\|2456039_2457308_-\|portal	phage portal protein	Q77W97	Enterobacteria_phage	5.1e-201	80.2
WP_041701221.1\|2457307_2459041_-\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	4.5e-147	46.4
WP_006537822.1\|2458994_2459462_-\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	9.5e-44	59.7
WP_020946087.1\|2459580_2459919_-	phage protein	F1C587	Cronobacter_phage	1.4e-41	69.7
WP_020946088.1\|2459915_2460323_-	hypothetical protein	NA	NA	NA	NA
WP_041701224.1\|2460403_2460916_-	KilA-N domain-containing protein	A0A1V0E5P7	Salmonella_phage	1.1e-58	66.3
WP_020946089.1\|2461741_2461945_+	KTSC domain-containing protein	NA	NA	NA	NA
WP_020946090.1\|2462217_2462679_-\|lysis	lysis protein	A0A1P8DTG0	Proteus_phage	7.4e-25	47.4
WP_020946091.1\|2462821_2463292_-	lysozyme	A0A1W6JNW4	Morganella_phage	1.2e-49	61.8
WP_020946092.1\|2463291_2463561_-	phage protein	A0A2H4FNF0	Salmonella_phage	1.6e-19	53.3
WP_020946093.1\|2463626_2464049_-	hypothetical protein	NA	NA	NA	NA
WP_041701226.1\|2464686_2464899_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.5e-25	78.6
2464061:2464077	attR	NA	NA	NA	NA
WP_020946095.1\|2465212_2465596_-	phage antitermination protein	Q777W5	Enterobacteria_phage	2.1e-49	72.8
WP_020946096.1\|2465595_2466570_-	plasmid-related protein	A0A286N2Q0	Klebsiella_phage	8.1e-106	55.4
WP_041701228.1\|2466566_2468132_-	DEAD/DEAH box helicase family protein	A0A286N2P9	Klebsiella_phage	6.3e-217	68.5
WP_020946098.1\|2468388_2468637_-	hypothetical protein	A0A286S2B5	Klebsiella_phage	8.9e-17	56.0
WP_020946099.1\|2468629_2468854_-	hypothetical protein	NA	NA	NA	NA
WP_020946100.1\|2468949_2469657_+	LexA family transcriptional regulator	K7P8B2	Enterobacteria_phage	1.9e-75	61.8

DBSCAN-SWA_8

2738847 : 2747703

Caulobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041701270.1\|2738847_2740416_-	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.2e-11	33.7
WP_012368337.1\|2740816_2741497_+	HAD-IB family hydrolase	NA	NA	NA	NA
WP_004245603.1\|2741593_2742169_-	TerD family protein	K4JRX3	Caulobacter_phage	1.2e-27	40.3
WP_004249446.1\|2742245_2742824_-	tellurium resistance membrane protein TerD	K4JRX3	Caulobacter_phage	2.4e-33	41.5
WP_020946216.1\|2742891_2743917_-	TerC/Alx family metal homeostasis membrane protein	K7QKE8	Escherichia_phage	1.0e-74	47.9
WP_020946217.1\|2743951_2744407_-	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_041701272.1\|2744431_2745580_-	tellurium resistance protein TerA	NA	NA	NA	NA
WP_004245609.1\|2745580_2746165_-	tellurium resistance protein TerZ	K4JRX3	Caulobacter_phage	4.2e-17	30.2
WP_020946219.1\|2746557_2747703_+	hypothetical protein	A0A172Q0Y1	Acinetobacter_phage	4.5e-31	27.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_022000

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection