CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047267	Pseudomonas syringae UB303 chromosome, complete genome	4 crisprs	DEDDh,PD-DExK,csa3,cas3,DinG,RT	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047267_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047267_1

402631-402742

Orphan

Consensus_repeat	Method
AAGTCCGCTCTTGATTCTGGCCGAAGGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047267_1

>merge|NZ_CP047267|1|402631-402742|CRISPRCasFinder
AAGTCCGCTCTTGATTCTGGCCGAAGGCCGCAGGAGCGACCGGGGCGGCGACCCGCTTTGTTCGCGAAGGCTCGTCATGCAGAAGTCCGCTCTGGATTCTGGCCGAAGGCCG

>NZ_CP047267|1|1|402631-402742|CRISPRCasFinder
AAGTCCGCTCTTGATTCTGGCCGAAGGCCG	CAGGAGCGACCGGGGCGGCGACCCGCTTTGTTCGCGAAGGCTCGTCATGCAG
AAGTCCGCTCTGGATTCTGGCCGAAGGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047267.1\|WP_024660830.1\|408836_409772_+\|malonate-decarboxylase-subunit-epsilon	unknown	unknown	gnl\|CDD\|132175
NZ_CP047267.1\|WP_024640822.1\|405390_406266_+\|triphosphoribosyl-dephospho-CoA-synthase	unknown	unknown	gnl\|CDD\|234927
NZ_CP047267.1\|WP_003316688.1\|399768_400029_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|181682
NZ_CP047267.1\|WP_003402969.1\|400003_400816_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP047267.1\|WP_011266403.1\|401820_402600_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP047267.1\|WP_011266400.1\|398962_399508_-\|membrane-protein	unknown	unknown	gnl\|CDD\|226995
NZ_CP047267.1\|WP_024640821.1\|406559_407411_+\|biotin-independent-malonate-decarboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|235954
NZ_CP047267.1\|WP_024660834.1\|396542_397277_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133022
NZ_CP047267.1\|WP_003316680.1\|395083_395533_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|238329
NZ_CP047267.1\|WP_024660831.1\|408201_408840_+\|malonate-decarboxylase-holo-ACP-synthase	unknown	unknown	gnl\|CDD\|234936
NZ_CP047267.1\|WP_024660832.1\|402912_403308_-\|PAAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|269829
NZ_CP047267.1\|WP_003402947.1\|410259_411024_+\|malonate-transporter-subunit-MadM	unknown	unknown	gnl\|CDD\|129890
NZ_CP047267.1\|WP_003402963.1\|403714_405391_+\|malonate-decarboxylase-subunit-alpha	unknown	unknown	gnl\|CDD\|379906
NZ_CP047267.1\|WP_024641099.1\|400791_401511_-\|beta-ketoacyl-synthase-chain-length-factor	unknown	unknown	gnl\|CDD\|379349
NZ_CP047267.1\|WP_003346322.1\|406267_406567_+\|malonate-decarboxylase-subunit-delta	unknown	unknown	gnl\|CDD\|179253
NZ_CP047267.1\|WP_011266401.1\|399504_399759_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|180033
NZ_CP047267.1\|WP_024660829.1\|409841_410258_+\|malonate-transporter-subunit-MadL	unknown	unknown	gnl\|CDD\|367674
NZ_CP047267.1\|WP_003402976.1\|395598_396546_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|226712
NZ_CP047267.1\|WP_003402951.1\|407407_408208_+\|biotin-independent-malonate-decarboxylase-subunit-gamma	unknown	unknown	gnl\|CDD\|369102
NZ_CP047267.1\|WP_080267711.1\|397269_398961_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|223442

Protein	Function_ID	Function_description	E-value
NZ_CP047267.1\|WP_024660830.1\|408836_409772_+\|malonate-decarboxylase-subunit-epsilon	gnl\|CDD\|132175	TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.	3.47962e-107
NZ_CP047267.1\|WP_024640822.1\|405390_406266_+\|triphosphoribosyl-dephospho-CoA-synthase	gnl\|CDD\|234927	PRK01237, PRK01237, triphosphoribosyl-dephospho-CoA synthase; Validated.	1.08099e-155
NZ_CP047267.1\|WP_003316688.1\|399768_400029_-\|acyl-carrier-protein	gnl\|CDD\|181682	PRK09184, PRK09184, acyl carrier protein; Provisional.	4.83973e-23
NZ_CP047267.1\|WP_003402969.1\|400003_400816_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	4.13049e-33
NZ_CP047267.1\|WP_011266403.1\|401820_402600_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.95588e-48
NZ_CP047267.1\|WP_011266400.1\|398962_399508_-\|membrane-protein	gnl\|CDD\|226995	COG4648, COG4648, Predicted membrane protein [Function unknown].	1.68462e-37
NZ_CP047267.1\|WP_024640821.1\|406559_407411_+\|biotin-independent-malonate-decarboxylase-subunit-beta	gnl\|CDD\|235954	PRK07189, PRK07189, malonate decarboxylase subunit beta; Reviewed.	2.75669e-167
NZ_CP047267.1\|WP_024660834.1\|396542_397277_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.21654e-37
NZ_CP047267.1\|WP_003316680.1\|395083_395533_-\|acyl-CoA-thioesterase	gnl\|CDD\|238329	cd00586, 4HBT, 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).	6.06055e-28
NZ_CP047267.1\|WP_024660831.1\|408201_408840_+\|malonate-decarboxylase-holo-ACP-synthase	gnl\|CDD\|234936	PRK01293, PRK01293, phosphoribosyl-dephospho-CoA transferase; Provisional.	2.13303e-97
NZ_CP047267.1\|WP_024660832.1\|402912_403308_-\|PAAR-domain-containing-protein	gnl\|CDD\|269829	cd14744, PAAR_CT_2, proline-alanine-alanine-arginine (PAAR) domain with uncharacterized C-terminal extension. This domain is found in the PAAR (proline-alanine-alanine-arginine) repeat family of mostly beta- and gamma-proteobacteria, and forms a sharp conical extension on the VgrG spike, a trimeric protein complex of the bacterial type VI secretion system (T6SS). Most members contain C-terminal domain extensions corresponding to several uncharacterized domains such as S-type pyocin, DUF2235, DUF2345 and cytotoxic proteins. However, these terminal domains are exposed to solution, and do not distort the binding site of VgrG. The pointed tip of the PAAR domain is stabilized by a zinc atom positioned close to the cone's vertex and is likely to be important for its integrity during penetration of the target cell envelope. VgrG proteins are orthologous to the central baseplate spikes of bacteriophages with contractile tails, and genes encoding proteins with PAAR motifs have been frequently found immediately downstream from vgrG-like genes.	1.93303e-24
NZ_CP047267.1\|WP_003402947.1\|410259_411024_+\|malonate-transporter-subunit-MadM	gnl\|CDD\|129890	TIGR00808, malonate_transporter, malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	3.34774e-121
NZ_CP047267.1\|WP_003402963.1\|403714_405391_+\|malonate-decarboxylase-subunit-alpha	gnl\|CDD\|379906	pfam16957, Mal_decarbox_Al, Malonate decarboxylase, alpha subunit, transporter. Mal_decarbox_Al is a family of Na+-transporting carboxylic acid decarboxylases.	0
NZ_CP047267.1\|WP_024641099.1\|400791_401511_-\|beta-ketoacyl-synthase-chain-length-factor	gnl\|CDD\|379349	pfam13723, Ketoacyl-synt_2, Beta-ketoacyl synthase, N-terminal domain.	1.52943e-90
NZ_CP047267.1\|WP_003346322.1\|406267_406567_+\|malonate-decarboxylase-subunit-delta	gnl\|CDD\|179253	PRK01220, PRK01220, malonate decarboxylase subunit delta; Provisional.	3.01758e-66
NZ_CP047267.1\|WP_011266401.1\|399504_399759_-\|acyl-carrier-protein	gnl\|CDD\|180033	PRK05350, PRK05350, acyl carrier protein; Provisional.	1.4645e-38
NZ_CP047267.1\|WP_024660829.1\|409841_410258_+\|malonate-transporter-subunit-MadL	gnl\|CDD\|367674	pfam03817, MadL, Malonate transporter MadL subunit.	5.98796e-57
NZ_CP047267.1\|WP_003402976.1\|395598_396546_-\|glycosyl-transferase	gnl\|CDD\|226712	COG4261, COG4261, Predicted acyltransferase [General function prediction only].	3.30413e-85
NZ_CP047267.1\|WP_003402951.1\|407407_408208_+\|biotin-independent-malonate-decarboxylase-subunit-gamma	gnl\|CDD\|369102	pfam06833, MdcE, Malonate decarboxylase gamma subunit (MdcE). This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyzes the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase.	2.18971e-93
NZ_CP047267.1\|WP_080267711.1\|397269_398961_-\|AMP-binding-protein	gnl\|CDD\|223442	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism].	9.24238e-27

>NZ_CP047267.1|WP_011266403.1|401820_402600_+|ParA-family-protein
MRRVVFNQKGGVGKSSIACNLAAVSAHEGYRTLLIDLDAQANSTQYLTGLTGQDIPMGIAEFFKNTLSGSPVAKKNHVDIYETPFDNLHVVTATAELADLQPKLEAKHKINKLRKLLDELSEDYERIYLDTPPALNFYAVSALIASDRVLIPFDCDSFSRQALYGLMREIEELKEDHNEGLQVEGIIVNQFQPRASLPQQMLDELIAEGLPVLPVYLNASVKMRESHQANLPLIHLDPRHKLTQQFMELHHLLETNAHP
>NZ_CP047267.1|WP_024641099.1|400791_401511_-|beta-ketoacyl-synthase-chain-length-factor
MITFNIARWQAWAPGLASAEDWQRWSLDPTLLETSDAAPDVSFLPAMQRRRLGRMARMAFAVGWPLTEGLGRVPLVFVSRHGETPRTFEILRDLAASEPLSPTQFSLSVHNAVIGLWSIMRGETSEMTALAATGDGLEYGAFEAAALLAEGAEAVLLVVTEEQPPQAYAQWIDDVPFPYAVGLLLTPGNEWQLSLNTDTQGTTRTQWPHALNLLRALHTDQSVCLHPWNNRLWNWQRSH
>NZ_CP047267.1|WP_003402969.1|400003_400816_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MELATQSLKKGRDAYYWRLLATGISFALFGLSGLCLRLFVFPVLGCLPGNVASHQRRARRTISRLFWLFIRIMARMRVLTYDVQGAEKLGRPGQMIIANHPSLIDVVFLIGLVRDANCVVKRSLWENPFTRGPVRATGYISNDGSMDMLDAAVERLQSGQTLIIFPEGTRTQPGQPPVFHRGAAAIALRGASVITPVTIKVQPTTLTKAEPWYRIPQRRVHFTLRVGADIDPTAFSALGPPPLASRKLNDYLHDYFTKELASDERSAPGH
>NZ_CP047267.1|WP_003316688.1|399768_400029_-|acyl-carrier-protein
MSDLHQDIKLLIIDALGLEDITPEDIGNDMTLFGEGLGLDSVDALELGLAIQKRYGIRIDADAKDTRNHFASVDSLAAFVSARQPA
>NZ_CP047267.1|WP_011266401.1|399504_399759_-|acyl-carrier-protein
MQTREDIFEILRAAMVELFELEPERVTLEANLYQDLEIDSIDAVDLIDHIKRKTGKKIAAEEFKSVRTVKDVVEAVYKLVNTAE
>NZ_CP047267.1|WP_011266400.1|398962_399508_-|membrane-protein
MKRLIGLILVLAGVLYPFAVYWGTEHFAPWQFALLLGSLWLARALTGERRQGSLAMAIVALIFCVVLGALDSHMMLRWYPVLVSTFMLGLFGSSLVYGPPIVEKMARLNRPDLPEAGIRYTRKVTQIWCLFFLVNGLTSAILTLWAPLSWWTLYTGLISYGLMGVLFAVEWIVRPPSAGGK
>NZ_CP047267.1|WP_080267711.1|397269_398961_-|AMP-binding-protein
MDRMNWLNLEHLLLDALPDRLLTLAPTLDHAQFRDQALSVAAGLQARGITHLAVHLEDAADLAIALFAAWRADVHVLLPADLQGQTRERWANQVDLWLTDLPGDTQLSDLRAAPLPAAELDLDQCRLSLCTSGSSGEPKLIEKCLRQLANEVCGLEQLWGAELGSACMIGSVATQHIYGLLFRLLWPLCAARPFVRRQLPFAEDLQRSSREYPSFAWVASPALLKRMGDNLDWHSLAAVRRVFSSGGALPADAAQSLQQRLGQWPTEILGSSETGGIAWRQGGQRWQAFDGVELSQDAQGALRISSPYLPPGHVEQTADAALIGEDGRFELLGRLDRIVKLEEKRVSLPLIEQALAAHEWVSEARLGVVQANRASLGALLVLSDAGLLALRNQGRRALTEALRQHLQPHCETIALPRRWRLLRQMPLNAQGKLPQADVEALLLAPRSKQPEVLEQQNVEGELHLQLSVPPDLAFFSGHFPKAPILPGVVQVDWVISLGQRLLDLPCGFAGMEVLKFQQLVRPGDRLTLTLRFDAARSKLHFAFRNADNAPCSSGRILLEDDHA
>NZ_CP047267.1|WP_024660834.1|396542_397277_-|glycosyltransferase-family-2-protein
MHKPCVIIPVFDHELAVPTVVKAVRNAGLPCILVDDASSPACAAVLKQLAQGEAIYLLRLPVNQGKGGAVMAGFREALRLGFSHALQVDADGQHDLSDIPLFLEQSRQHPDALICGYPQFDESVPKGRLYARYLTHVWVWINTLSLHIRDSMCGFRLYPLAPVVALIDRVQIGRRMDFDSEILVRLSWRGQPMRWLPTRVHYPQDGLSHFRLFHDNALISKMHAKLFFGMLVRLPMILWRRWRP
>NZ_CP047267.1|WP_003402976.1|395598_396546_-|glycosyl-transferase
MSIDKSPREHWASHQERGSFMLMKLTAWGMRVLGRRLLSPVLYGIVLYFFVFGRRARHSIWQYQQHLADWSGKPELRPGQRRVFGQFMAFADALLDKLDVWNGRLGIDQIEIVDQALLRQNLRGQRGQMLVGAHLGNLEVCRALAELGEKVTMNVLVHTKHAERFNRLLGEAGATHLRLIQVSELDPAIMLQLSQRLDEGEWLAIAGDRVALHGGRNVRVDFLGKPANFPQGPWLLAGLLKCPVNLFFCLKGAKGYRVILEPFADAIEWRRSDRAQVIEQWATRYAERLGHYCLEAPQQWFNFYPFWKSADESGS
>NZ_CP047267.1|WP_003316680.1|395083_395533_-|acyl-CoA-thioesterase
MRSKGFLHIDTEIVVPFFDVDMMNIVWHGHYVKYLEVARCALLDHIGHNYMQMLESGYGWPVIDLQLRYVRSAVFGQTLNVRASLVEWENRLKINYLITDAHTGERLTRASTVQVAVDSQSREMQLASPQVFIDAVKNALESTIESASP
>NZ_CP047267.1|WP_024660832.1|402912_403308_-|PAAR-domain-containing-protein
MSFIVREGDLTTTGGFVLAASASEVIERRRVARMGDPVWCPACKEIGFIAQGNPTYIDELVAVATQGHEVQCGCATGSNTLTTSQEHVRADMDATITIPEELANTARHNAEHLARSMKDGSFTPDVLRPLT
>NZ_CP047267.1|WP_003402963.1|403714_405391_+|malonate-decarboxylase-subunit-alpha
MTTTTSPDARWTRRRSEKQRRLEQVRALADGVVLPTDNIVAALEALLVSGDRVVLEGNNQKQADFLSRALAKVDPGKVHDLHMIMPSVGRAEHLDLFEQGIARKLDFSFAGTQSLRISQLLEDGLLEIGAIHTYIELYSRLVVDLIPNVVLAAGFMADRAGNIYTGPSTEDTPALIEPAAFSDGIVIVQVNQLVDDVSELPRVDIPASWVDFVVVADKPFYIEPLFTRDPRHIKPVHVLMAMMAIRGIYEKHNVQSLNHGIGFNTAAIELILPTYGESLGLKGKICRNWTLNPHPTLIPAIESGWVESVHCFGTELGMENYIAARPDVFFTGRDGSLRSNRQLCQLAGQYAVDLFIGATLQVDGDGHSSTVTRGRLAGFGGAPNMGHDPRGRRHATPAWLDMRQQHDDGPAAYLERGKKLVVQMVETFQEGGKPTFVETLDAVEVAKKSGMPLAPIMIYGDDVTHLLTEEGIAYLYKARSLEERQAMIAAVAGVTVIGLRHNPKDTARMRREGLIALPEDLGIRRTDASRELLAAKSIADLVQWSGGLYNPPAKFRSW
>NZ_CP047267.1|WP_024640822.1|405390_406266_+|triphosphoribosyl-dephospho-CoA-synthase
MSALQWTPQPASLAERLADLAVDALIDEADLSPKPALVDRRGSGAHTDLHLGLMHSSALSLWPTFKWMADAATQFGVVGQPLREALGRLGREGEATMLRTTSGVNTHRGAIWALGLLVTAAALDAQECAPEAVCARAAALARIKDRQVLTQNSHGDQVVRRYGVMGAREQAQQGFPAVRLFALPQLQRSRAAGSGEQNARLDALLAIMTTLDDTCVLHRAGIEGLNAMQQGAQRVLDAGGSASLAGRRALNALDQHLLALNASPGGAADLLAGCLFIDGLEPALGLVSRSA
>NZ_CP047267.1|WP_003346322.1|406267_406567_+|malonate-decarboxylase-subunit-delta
METLSFEFPAGQPPKGRALVGVVGSGDLEVLLEPGKPGTLSIQVVTSVNGAALRWQHLFERMFDGQTPPALSIDIHDFGATPGVVRLRLEQGFEEIGHD
>NZ_CP047267.1|WP_024640821.1|406559_407411_+|biotin-independent-malonate-decarboxylase-subunit-beta
MTDNARLLNQHSFIELGARQRARALLDAGSFRELLGPFDRVMSPWLAMQGVVPQADDGVVVAKGTVDGRPVVIAAIEGSFQGGSMGEVGGAKMAGALELAAEDNRNGIPTAAIVLLETGGVRLQEANLGLAAIAEIHAAIVDLRQYQPVIGVLAGSVGCFGGMSIAAGLCSYLLVTQEARLGLNGPQVIEQEAGIEEYDSRDRPFIWSLTGGEQRFASALVDGFAADDVADVRQQVSGWLKQGVPDTHRSSQYPLFLQRLASLDTEPQIDPQSVRTLYQGARS
>NZ_CP047267.1|WP_003402951.1|407407_408208_+|biotin-independent-malonate-decarboxylase-subunit-gamma
MSHSQRGLNWFNALSAGAREVTGLPASLKVADGVLGEQPVRFLAVIADTDNRFPRARQGEVGLLEGWGLAKAVDEAIEQDRDRAEKRALIAIVDVPSQAYGRREEALGIHQALAGAVDSYARARLAGHPVIGLLVGKAMSGAFLAHGYQANRLIALRDPGVMVHAMGKASAARVTLRSVEDLEKLAASIPPMAYDIDSYASLGLLWETLTVKQIEQPAADDLVQVRNVLSSAIKDVQARGVDLSSRLGASNRAASVNVRQLLRAQW
>NZ_CP047267.1|WP_024660831.1|408201_408840_+|malonate-decarboxylase-holo-ACP-synthase
MVISNTGAVLPHDLLWGMPLTALPDDAPQWAVEAVLAGQPVVVRRQAMPAGQVAVGLRGRGREQRYAASMPLADVCRRVMPEQLIDAPTEIHQQWPALQALRQIRPVMEALELDWGVGGSAGFELASGIAALHQDSDLDLILRTPGRLNRRCAAELVEALETSVCRVDVQLQLESGAVALREWARPTGRVLLKTATGARLVADPWHLRQVCA
>NZ_CP047267.1|WP_024660830.1|408836_409772_+|malonate-decarboxylase-subunit-epsilon
MSSLWVFPGQGAQQAGMLHQLPDDAVVRDCLQEAADALGEDVLALDTAEALQATRAVQLCLLIAGVACARVLQARDCVPDYLAGLSIGAYPAAVVSGALAFDDAVRLVALRGELMQSAWPQGYGMTALIGLDQTQVEALIGQVHSANTPVFLANINADNQMVISGSAEAMHQVGQLAKAAGAAAVKRLAVSVPSHCALLDAPAQQLAEAFSRVALQAPTLRYLSGSTARPVLSAEKLRDDLAFNMCRVIDWRSTVETAWERGVRLHIELPPGSVLTGLARKVFQQGSALAFQAARLDSLVALSREEGRRTP
>NZ_CP047267.1|WP_024660829.1|409841_410258_+|malonate-transporter-subunit-MadL
MIIYGVALLAICTLAGVILGDMLGVLLGVKSNVGGVGIAMILLICARLWMEKHGGMSKDCEMGVGFWGALYIPVVVAMAAQQNVVTALKGGPVAVLAAVGSVVLCACTIALISRTNRGEPLPKEEPLLTPEIAPAEGR
>NZ_CP047267.1|WP_003402947.1|410259_411024_+|malonate-transporter-subunit-MadM
MWDLIEKGLEHNGLITAFAFVGIIMWVSVVLSRRLTFGRVHGSAIAIVIGLILAWVGGTLTGGQKGLADITLFSGIGLMGGAMLRDFAIVATAFEVQATEARKAGLIGVIALLLGTILPFIVGASIAWMFGYRDAISMTTIGAGAVTYIVGPVTGAALGATSDVMALSIATGLIKAILVMVGTPMAARWMGLDNPRSAMVFGGLAGTVSGVTAGLAATDRRLVPYGALTATFHTGLGCLLGPSVLYFIVRAIVG

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Crispr_ID: NZ_CP047267_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047267_2

1665038-1665174

Orphan

Consensus_repeat	Method
CCAATCCACCTGACATCACAGAACCGCTGTGTGACGCGGAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047267_2

>merge|NZ_CP047267|2|1665038-1665174|CRISPRCasFinder
CCAATCCACCTGACATCACAGAACCGCTGTGTGACGCGGAGCGTCACGAACGGCATTACCACGCGGAGCGTGGGAACGATAGTCGGGCCCGAACGCCAATCCACCTGACATCACAGAACCTCTGTGTGACGCGGAGC

>NZ_CP047267|2|2|1665038-1665174|CRISPRCasFinder
CCAATCCACCTGACATCACAGAACCGCTGTGTGACGCGGAGC	GTCACGAACGGCATTACCACGCGGAGCGTGGGAACGATAGTCGGGCCCGAACG
CCAATCCACCTGACATCACAGAACCTCTGTGTGACGCGGAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047267.1\|WP_011267125.1\|1657781_1658543_+\|UTRA-domain-containing-protein	unknown	unknown	gnl\|CDD\|132380
NZ_CP047267.1\|WP_004408361.1\|1670280_1670517_-\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|239550
NZ_CP047267.1\|WP_011267130.1\|1670500_1671358_-\|iron-containing-redox-enzyme-family-protein	unknown	unknown	gnl\|CDD\|379634
NZ_CP047267.1\|WP_011267122.1\|1652902_1653892_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP047267.1\|WP_003317454.1\|1666184_1666997_-\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NZ_CP047267.1\|WP_003317453.1\|1665930_1666185_-\|cell-division-topological-specificity-factor-MinE	unknown	unknown	gnl\|CDD\|234718
NZ_CP047267.1\|WP_011267128.1\|1665204_1665840_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP047267.1\|WP_003421288.1\|1654677_1655520_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226616
NZ_CP047267.1\|WP_004408565.1\|1653893_1654691_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NZ_CP047267.1\|WP_024660969.1\|1671357_1672155_-\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
NZ_CP047267.1\|WP_024661200.1\|1655516_1656323_-\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|224441
NZ_CP047267.1\|WP_159372263.1\|1659002_1663061_+\|Ice-nucleation-protein	unknown	unknown	unknown
NZ_CP047267.1\|WP_024643192.1\|1652150_1652804_-\|HAD-IB-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
NZ_CP047267.1\|WP_003368369.1\|1667228_1667969_-\|septum-site-determining-protein-MinC	unknown	unknown	gnl\|CDD\|234730
NZ_CP047267.1\|WP_004408355.1\|1672144_1672663_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047267.1\|WP_011267127.1\|1663312_1664602_-\|M18-family-aminopeptidase	unknown	unknown	gnl\|CDD\|235073
NZ_CP047267.1\|WP_004408362.1\|1669054_1670239_+\|patatin	unknown	unknown	gnl\|CDD\|132848
NZ_CP047267.1\|WP_024660968.1\|1668089_1669022_+\|lipid-A-biosynthesis-lauroyl-acyltransferase	unknown	unknown	gnl\|CDD\|235543
NZ_CP047267.1\|WP_024643193.1\|1651168_1652131_+\|NAD(P)H-quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176180
NZ_CP047267.1\|WP_011267124.1\|1656401_1657469_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270267

Protein	Function_ID	Function_description	E-value
NZ_CP047267.1\|WP_011267125.1\|1657781_1658543_+\|UTRA-domain-containing-protein	gnl\|CDD\|132380	TIGR03337, phnR, phosphonate utilization transcriptional regulator PhnR. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Salmonella, Vibrio Aeromonas hydrophila, Hahella chejuensis and Psychromonas ingrahamii. [Regulatory functions, DNA interactions].	3.71954e-82
NZ_CP047267.1\|WP_004408361.1\|1670280_1670517_-\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|239550	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.	2.48988e-09
NZ_CP047267.1\|WP_011267130.1\|1670500_1671358_-\|iron-containing-redox-enzyme-family-protein	gnl\|CDD\|379634	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme. The CADD, Chlamydia protein associating with death domains, crystal structure reveals a dimer of seven-helical bundles. Each bundle contains a di-iron centre adjacent to an internal cavity that forms an active site similar to that of methane mono-oxygenase hydrolase.	6.59427e-20
NZ_CP047267.1\|WP_011267122.1\|1652902_1653892_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	8.21531e-147
NZ_CP047267.1\|WP_003317454.1\|1666184_1666997_-\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	7.8418e-167
NZ_CP047267.1\|WP_003317453.1\|1665930_1666185_-\|cell-division-topological-specificity-factor-MinE	gnl\|CDD\|234718	PRK00296, minE, cell division topological specificity factor MinE; Reviewed.	1.35704e-46
NZ_CP047267.1\|WP_011267128.1\|1665204_1665840_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	2.57106e-78
NZ_CP047267.1\|WP_003421288.1\|1654677_1655520_-\|ABC-transporter-permease-subunit	gnl\|CDD\|226616	COG4132, COG4132, ABC-type uncharacterized transport system, permease component [General function prediction only].	4.03847e-111
NZ_CP047267.1\|WP_004408565.1\|1653893_1654691_-\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	3.2364e-59
NZ_CP047267.1\|WP_024660969.1\|1671357_1672155_-\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	5.13602e-37
NZ_CP047267.1\|WP_024661200.1\|1655516_1656323_-\|alkaline-phosphatase-family-protein	gnl\|CDD\|224441	COG1524, COG1524, Uncharacterized proteins of the AP superfamily [General function prediction only].	3.67462e-39
NZ_CP047267.1\|WP_024643192.1\|1652150_1652804_-\|HAD-IB-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.91941e-57
NZ_CP047267.1\|WP_003368369.1\|1667228_1667969_-\|septum-site-determining-protein-MinC	gnl\|CDD\|234730	PRK00339, minC, septum site-determining protein MinC.	8.00188e-159
NZ_CP047267.1\|WP_011267127.1\|1663312_1664602_-\|M18-family-aminopeptidase	gnl\|CDD\|235073	PRK02813, PRK02813, putative aminopeptidase 2; Provisional.	0
NZ_CP047267.1\|WP_004408362.1\|1669054_1670239_+\|patatin	gnl\|CDD\|132848	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	2.50264e-39
NZ_CP047267.1\|WP_024660968.1\|1668089_1669022_+\|lipid-A-biosynthesis-lauroyl-acyltransferase	gnl\|CDD\|235543	PRK05646, PRK05646, lipid A biosynthesis lauroyl acyltransferase; Provisional.	0
NZ_CP047267.1\|WP_024643193.1\|1651168_1652131_+\|NAD(P)H-quinone-oxidoreductase	gnl\|CDD\|176180	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	8.68834e-151
NZ_CP047267.1\|WP_011267124.1\|1656401_1657469_-\|extracellular-solute-binding-protein	gnl\|CDD\|270267	cd13549, PBP2_Fbp_like_3, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic domain (Fbp) has high affinity for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.13833e-57

>NZ_CP047267.1|WP_011267127.1|1663312_1664602_-|M18-family-aminopeptidase
MRAELNKGLIDFLKASPTPFHATATLVQHFEAAGFQRLDERDTWAVETGGRYFVTRNDSSIVAFRMGRQSPLSGGIRMVGAHTDSPCLRVKPQPELQRQGFWQLGVEVYGGALLAPWFDRDLSLAGRVTFRRDGKVESQLIDFKLPIAVIPNLAIHLNRTANEGWAINAQNELPPILAQVAGDERADFRALLTDQLAREHGLNADVVLDYELSFYDTQGAAVVGLNGDFLAGARLDNLLSCFAGMQALLNTESDETALLVCTDHEEVGSSSACGADGAMLEQIVQRLLPSSEDYVRTIQKSLLISADNAHGIHPNYADKHDANHGPKLNAGPVIKVNSNQRYATNSETAGFFRHLCMAEEVPVQSFVVRSDMGCGSTIGPITASHLGIRTVDIGLPTFAMHSIRELAGSHDLAHLVKVLSAFYASHELP
>NZ_CP047267.1|WP_159372263.1|1659002_1663061_+|Ice-nucleation-protein
MNLDKALVLRTCANNMADHCGLIWPASGTVESKYWQSTRRHENGLVGLLWGAGTSAFLSVHADARWIVCEVAVADIISLDEPGMVKFPRAEVVHVGDRISASHFISARQADPASTPPPTSMTTATPPPTPTPAAAHVTLPVAASVTLPVAEQASHEVFDVALVIAAAPSVNTLPVTTPQNLQTATYGSTLSGDNHSRLIAGYGSNETAGNHSDLIAGYGSTGTAGSDSSLVAGYGSTQTAGGDSALTAGYGSTQTAREGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGEDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGGDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGEDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGGDSSLTAGYGSTQTAQEGSNLTSGYGSTGTAGADSSLIAGYGSTQTSGSDSALTAGYGSTQTAQQGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGSDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGVDSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGADSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGADSSLIAGYGSTQTSGSESSLTAGYGSTQTAREGSTLTAGYGSTGTAGADSSLIAGYGSTQTSGSESSLTAGYGSTQTAQQGSVLTSGYGSTQTAGAASNLTTGYGSTGTAGHESFIIAGYGSTQTAGHKSILTAGYGSTQTARDGSDLIAGYGSTGTSGSSSSLIAGYGSTQTASYKSMLTAGYGSTQTAREHSDLVAGYGSTSTAGSNSSLIAGYGSTQTAGFKSILTAGYGSTQTAQERSDLVAGYGSTSTAGYSSSLIAGYGSTQTAGYGSTLTTGYGSTQTAQENSSLTTGYGSTSTAGYSSSLIAGYGSTQTAGYESTLTAGYGSTQTAQERSDLVTGYGSTSTAGYASSLIAGYGSTQTAGYESTLTAGYGSTQTAQENSSLTTGYGSTSTAGFASSLIAGYGSTQTAGYKSTLTAGYGSTQTAEYGSSLTAGYGSTATAGQDSSLIAGYGSSLTSGIRSFLTAGYGSTLIAGLRSVLIAGYGSSLTSGIRSTLTAGYGSNQIASYGSSLIAGHESIQVAGNKSMLIAGKGSSQTAGFRSTLIAGAGSVQLAGDRSRLIAGADSNQTAGDRSKLLAGNNSYLTAGDRSKLTGGHDCTLMAGDQSRLTAGKNSILTAGARSKLIGSEGSTLSAGEDSTLIFRLWDGKRYRQLVAKTGENGVEADIPYYVNEDDDIVDKPDEEDDWIEVE
>NZ_CP047267.1|WP_011267125.1|1657781_1658543_+|UTRA-domain-containing-protein
MPRNRAGLVQTDTGMREDVPRAVTTICHALQEQIEHGLLPHGSKLPAERKLSEVFATTRITLREALLQLESQGLIYREERRGWFISPPRLAYDLIRRSHFHAMVCAQGRVPHTQLLSARLQPASAMICEMLELPALSSVIQICRARRIDQRLVLYVEHYLRPELFPGILEHDLNESLTALYARCYDIHCGRVRFDMVPTSLHSEASAALKVSLGSPGLRIARVNYDRKDRLIDCDLEYWRHDAIHVRAEVHGD
>NZ_CP047267.1|WP_011267124.1|1656401_1657469_-|extracellular-solute-binding-protein
MKHLLLASLLGSAMAMSSLVMAADTDLKTLEAAAKAEGAVNSLGMPDDWANWGGIWKDLEAKYGLKHMDTDMSSAQEIAKFEAEKDNASGDIGDVGAAFGPIAAAKGVTQPYKPTTWEQIPTWAKDTDGHWALAYTGTIAFIVNKNLLHGSDIPKSWADLKTGKYKVSIGDVSTAAQAANGVLAAAIAMKGDESNIAPGLALFTDLAKQKRLSLANPTIQTIEKGEIEVGVVWDFNGLSYKAKMTKPDDYVVLIPSDGSVISGYTTIINKYAKHPNAAKLAREYTFSDAGQIRLAEGNARPIRVEHIKLPEDVQAKLLPQDQYKNAKPIKNADAWEKTSKALPQMWNEQVIIEMN
>NZ_CP047267.1|WP_024661200.1|1655516_1656323_-|alkaline-phosphatase-family-protein
MKHNVILIVLDGLNYEVARHAMGHLQAWHAAGRAALYKIECELPALSRPLYECILTGVAPIDSGIVHNNVSRLSNQRSIFHYARDAGLSTAAAAYHWVSELYNRTPFDPARDRHTEAADLPIQHGLFYWADHYPDSHLFADAESLRLSHAPNFLLIHPMNIDDAGHKHGLDTAQYRNSARSADIILADYLQRWLDAGYQVLVTADHGMNNDRSHNGLLPEEREVPLFVIGDAFSLNVDAAPRQTDLCGTVCELLGIPHDKPVCREIFN
>NZ_CP047267.1|WP_003421288.1|1654677_1655520_-|ABC-transporter-permease-subunit
MTTFSRGKWLGLLCLLPFAVFFIVFQIAPLLWVAIHSLQSDAGWGWENFTRAFSSKFYRQAIQYSLEISFWSSLFGIIISVLGAYSLRKVDSRLRDFVNSFANMTSNFAGVPLAFAFIILLGFNGALTLILKQTGIIDDFNLYSKTGLIILYTYFQIPLGVLLLYPAFDAVREDWNESAALLGASSYQFWRYIGLPVLTPALLGTFVILLANALGAYATVYALTTGNFNVLPIRIAAMVAGDITLDPNMASALAMILVGLMTLVTVVHQWLLRRSYHVTR
>NZ_CP047267.1|WP_004408565.1|1653893_1654691_-|ABC-transporter-permease
MSRVERGPASIYHKTVVCLLFLILLLPLAGTFLYSIATSWSATILPSGLTFKWYVALWSDPRFLTAFGQSLLVCVGALILSVVLILPLLFVVHYYFPRLDGLMNILILLPFAVPPVVSSVGLLQLYGSGPMAMVGTPWILIGCYFTVALPFMYRAITNNLQAINLTDLMDAARLLGASTWQAAFMVVLPNLRKGLMIALLLSFSFLFGEFVFANLLVGTRYETLQVYLNNMRNSSGHFNSALVISYFLFVLVLTWAANRLNKDKD
>NZ_CP047267.1|WP_011267122.1|1652902_1653892_-|ABC-transporter-ATP-binding-protein
MSFVSIENLQKSYASTSVFSDINCSIAKGEFVTLLGPSGCGKSTLLRCIAGLTPVNSGRILLDGSDLVPLTPQKRNIGMVFQSYALFPNMTVEQNVAFGLRIQKVSADESTRRVAEILRMVELHDFATRYPHQLSGGQCQRVALARSLVTRPRLLLLDEPLSALDARIRKNLREQIRAIQRELGLTTIFVTHDQEEALTMSDRIFLMNQGRIVQSGDAETLYTAPVDVFAAGFIGNYNLLEADDATRLMQRPINSRVAIRPESIQLSLTGELEGEIRSHSLLGNVIRYRVQARGVKLVVDVLNRSADDLHPDGRRVTLNIEPSALCALD
>NZ_CP047267.1|WP_024643192.1|1652150_1652804_-|HAD-IB-family-hydrolase
MPLAIFDLDETLIGGDCATLWSEQMGRLGWVDSTSFMQRNDELMAAYSEGKLAMEDYMAFSLEPMAGRTPEEIEHLVGPWVEDVIEPIIYSDACTCIAKHRAKGDRILVISASGVHLVKPIAERLGIDEVLGIELDVQHGVYSGATVGVLTYREGKITRLMEWLDAEGENLEGASFYSDSRNDLPLLLKVDHPNVVNPDAVLLEHAQKAGWPVHDWS
>NZ_CP047267.1|WP_024643193.1|1651168_1652131_+|NAD(P)H-quinone-oxidoreductase
MKALQGVEGHVEWVEEPSPALDVGQVRIKVAAAGLNRADLLQREGKYPPPPGVTQTLGLECSGVIAEVGPGSSWVVGDRVCALLAGGAMAEEVVVDGRHVLPVPEGLSLHEAAAIPEVYATAWLNLFELAGLKPGEKVLLHAGASGVGSAGIQLCKAFGNPVWVSVGSAERLAYCVELGAQGGVVRSESLEGLNDFAPFNVILDPVGASYAELNVKLLALDGRWVLIGVMSGREAKVDLAHVLGKRIRLMGSTLRSRDDTFKADLLSDLGQHVWPLFTEGRLKPQLAKSFAIKDAEAAFEELATNTVSGKIVLVIDESLV
>NZ_CP047267.1|WP_011267128.1|1665204_1665840_-|RluA-family-pseudouridine-synthase
MPLSNIRIIHQDAAVLVIDKPTLLLSVPGRADDNKDCLITRLQENGYPEARIVHRLDWETSGIILLARDADTHRELSRQFHDRETEKAYTALCWGQPSLDSGSIDLPLRYDPPTKPRHVVDHEGGKHALTFWKVVERHDTYCRVELTPITGRSHQLRVHMLSIGHPLLGDGLYAHPEALAAYPRLCLHASMLSFTHPGTGERMTFECAAPF
>NZ_CP047267.1|WP_003317453.1|1665930_1666185_-|cell-division-topological-specificity-factor-MinE
MNIFDFFRDRKKGSTASVAKERLQIIVAHERGQRSTPDYLPALQKELVEVIRKYVNIESDQVQVALESQGSCSILELNITLPDR
>NZ_CP047267.1|WP_003317454.1|1666184_1666997_-|septum-site-determining-protein-MinD
MAKILVVTSGKGGVGKTTTSAAIGTGLALRGHKTVIVDFDVGLRNLDLIMGCERRVVYDFVNVVNGEANLQQALIKDKKIEGLFVLAASQTRDKEALTKEGVEKVLMELKESFEYIVCDSPAGIETGAHLAMYFADEAIVVTNPEVSSVRDSDRMLGLLASKSRRAERGEDPIKEHLLLTRYNPERVSKGEMLGVEDVKEILAVTLLGVIPESQAVLKASNQGVPVILDDQSDAGQAYSDAVDRLLGKTLEHRFLDVHKKGFFERLFGGN
>NZ_CP047267.1|WP_003368369.1|1667228_1667969_-|septum-site-determining-protein-MinC
MSQIESQNPEPVFQLKGSMLAITVMELARTNLEALDRQLAAKVAQAPNFFSNTPLILALDKLAPNEGPVDLPGLVRICRQHGLRTLAIRANRIEDIAAAIAVDLPVLPPSGARERVIDPVEAEAPKKIPEKPPEPLIKPTRVITAPVRGGQQIYAQGGDLVVVAPVSPGAELLADGNIHVYGPMRGRALAGIKGDTKARIFCQQLSAELISIAGQYKVSEDLRRDPLWGSPVQISLSGDVLNIIRL
>NZ_CP047267.1|WP_024660968.1|1668089_1669022_+|lipid-A-biosynthesis-lauroyl-acyltransferase
MDRPRLKASFLHPRFWPLWLGLGLLWLIVQLPFCVLLVIGRALGAIMYRVATDRKKIASRNLELCFPHLSAAERKRLLKENFASTGIAFFEMAMSWWWSKKRLARLAHVEGLEHLQNAQEKGEGVILMALHFTTLEIGAALLGQQHTIDGMYREHKSPLFDFVQRRGRERHNLDSLAVERDDVRGMLKLLRAGRAIWYAPDQDYGAKQSIFVPLFGIQAATVTATSKFARLGRAQVVPFTQWRLADGSGYRLVIHPPLDNFPGESDEADCLRINQWVEKAVTECPEQYLWAHRRFKSRPPGEPKLYNKHK
>NZ_CP047267.1|WP_004408362.1|1669054_1670239_+|patatin
MPDPAVAINAVRSPVEPVTGLILSGGGARAAYQVGVLAGIADLLPAGAPNPFPVIVGTSAGAINAVKLASGALHFRIAIHQLTEFWQSFRSHQVLRSDWSGVIHQASRFFGRSLMGFGRNIPVALLNSSPLRELLNERLDLSGIEAAINAHHLRAVAVTAFGYESGQAVTFYQGRGTIEPWLRHRRIGRPTQLTVDHLLASSAIPLLFAPVMLDKEYFGDGAVRQSAPISPALHLGANRVLVVGVSGNPRGLKSERPAPRPPNGMQPSLAQISGHMLNSTFIDNLESDIELLERLNTASALLPDEQIRQPGMEPVEVLVISPSRPLDEIAARHRRELPPALRTFLRGPGATRSSGASVLSYLLFESGYCSELIELGRHDAIAQGAELKRFLRLT
>NZ_CP047267.1|WP_004408361.1|1670280_1670517_-|Rieske-2Fe-2S-domain-containing-protein
MNEPAEFRRPDTFTVHIGQEQYLIPSSCPHREGWLEHGVVNEKRRSITCPLHFSVFSLETGEQLSGPPCGQLQVRRVR
>NZ_CP047267.1|WP_011267130.1|1670500_1671358_-|iron-containing-redox-enzyme-family-protein
MEDLHKQLFLANRALIEKRVPMPQAILAFEQHWIEDAIERSMTADAPDDLAGLRRMLAELVEQESSEVPPSAQYVANDMTLDEFRILVQEFALDGLTEAQVFYHLMPRLSLPAQMPMLRMMIDEFGSGNLKRSHTTLYQDLLRELEMPLDLQFYVDANSSAGFTFPNMFCWLAMRADDASWFAGVITYFETVVPFFFECYTQLCERLQIKAHTYYSEHVHIDVFHAIEGQRLLKAMDVSGDLDPVKAWRGICMGREITNLAFDLAVEKARRLKHFNKEVSLERAC
>NZ_CP047267.1|WP_024660969.1|1671357_1672155_-|dihydrodipicolinate-synthase-family-protein
MSGKSILVPLITPLNAQEQVCEASLERLLGSLAPHVDGYIPCLTSGEGWRLSRQQWLQMLTLTLRHAGERSVIAGIERHSTQEVLDFALLAQDAGAQAVMFTSPLTPGISQQAIIEHYQTIHDATHMDIFMYNEAALSGNEKSFATLKAIAQLPRVIGLKDSPSLSRPQAQVDAIRQEGVDYFIGWEMQLAGDLESDGNVVSLANLEPLLCRTAAARQQPALSQEVATLNQRYLLNAPDWYAHIKRELRARGVINSERVVTEEAA
>NZ_CP047267.1|WP_004408355.1|1672144_1672663_-|hypothetical-protein
MSDFDLPMIDATVFMGMHHADPGVRDKSLEFFSRFYESSVQMNFAQIGICDAIIWKKGRALQDAYYPFMDVLHTDMAIQREGYSEQVLQRAAGETLFRGLPADKKLLAAQVLEQEIPFYTHDPELLRLQVLQPFLQPFESTIRRQTFPKMLQRLYDQSCAMVISNEDFQHVW

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP047267_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047267_3

4421605-4421706

Unclear

Consensus_repeat	Method
GCTCCGCATGGGTATGCCGTTCT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP047267_3

>merge|NZ_CP047267|3|4421605-4421706|CRISPRCasFinder
GCTCCGCATGGGTATGCCGTTCTGGACGCTCTGCCTCCTGCCTTGAGTACGCGGACAGCTCTCTGACTATCGTACCCATGCTCCGCGTGGGTATGCCGTTCT

>NZ_CP047267|3|3|4421605-4421706|CRISPRCasFinder
GCTCCGCATGGGTATGCCGTTCT	GGACGCTCTGCCTCCTGCCTTGAGTACGCGGACAGCTCTCTGACTATCGTACCCAT
GCTCCGCGTGGGTATGCCGTTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047267.1\|WP_159372292.1\|4425832_4428205_+\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|274514
NZ_CP047267.1\|WP_011268646.1\|4417595_4418432_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225543
NZ_CP047267.1\|WP_003425465.1\|4420549_4421413_+\|lipoprotein	unknown	unknown	unknown
NZ_CP047267.1\|WP_003402493.1\|4415485_4415677_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|283241
NZ_CP047267.1\|WP_024650581.1\|4428757_4429657_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176150
NZ_CP047267.1\|WP_024638938.1\|4424926_4425616_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP047267.1\|WP_003425462.1\|4418747_4418927_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047267.1\|WP_011268643.1\|4414296_4415262_-\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|224214
NZ_CP047267.1\|WP_003402477.1\|4422191_4423529_-\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|223587
NZ_CP047267.1\|WP_011268645.1\|4416893_4417526_+\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239322
NZ_CP047267.1\|WP_024659750.1\|4428324_4428738_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047267.1\|WP_080267618.1\|4423679_4424930_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236532
NZ_CP047267.1\|WP_024659747.1\|4431613_4432876_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP047267.1\|WP_011268644.1\|4416347_4416749_-\|DUF2177-family-protein	unknown	unknown	gnl\|CDD\|378319
NZ_CP047267.1\|WP_011268647.1\|4419040_4419607_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047267.1\|WP_103359350.1\|4423531_4423765_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047267.1\|WP_011268648.1\|4419751_4420480_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273922
NZ_CP047267.1\|WP_003363371.1\|4415889_4416270_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047267.1\|WP_024659748.1\|4430588_4431617_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223999
NZ_CP047267.1\|WP_024659749.1\|4429745_4430528_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225158

Protein	Function_ID	Function_description	E-value
NZ_CP047267.1\|WP_159372292.1\|4425832_4428205_+\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|274514	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP047267.1\|WP_011268646.1\|4417595_4418432_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225543	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].	1.89195e-109
NZ_CP047267.1\|WP_003402493.1\|4415485_4415677_-\|CsbD-family-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	5.96802e-09
NZ_CP047267.1\|WP_024650581.1\|4428757_4429657_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176150	cd08461, PBP2_DntR_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.77177e-97
NZ_CP047267.1\|WP_024638938.1\|4424926_4425616_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	9.70776e-76
NZ_CP047267.1\|WP_011268643.1\|4414296_4415262_-\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	2.83791e-66
NZ_CP047267.1\|WP_003402477.1\|4422191_4423529_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	1.82325e-136
NZ_CP047267.1\|WP_011268645.1\|4416893_4417526_+\|thioredoxin-domain-containing-protein	gnl\|CDD\|239322	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.	7.203e-44
NZ_CP047267.1\|WP_080267618.1\|4423679_4424930_-\|HAMP-domain-containing-protein	gnl\|CDD\|236532	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA.	1.31904e-50
NZ_CP047267.1\|WP_011268644.1\|4416347_4416749_-\|DUF2177-family-protein	gnl\|CDD\|378319	pfam09945, DUF2177, Predicted membrane protein (DUF2177). This domain, found in various hypothetical bacterial proteins, has no known function.	4.24722e-43
NZ_CP047267.1\|WP_024659747.1\|4431613_4432876_-\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.58435e-103
NZ_CP047267.1\|WP_011268648.1\|4419751_4420480_+\|hypothetical-protein	gnl\|CDD\|273922	TIGR02001, gcw_chp, conserved hypothetical protein, proteobacterial. This model represents a conserved hypothetical protein about 240 residues in length found so far in Proteobacteria including Shewanella oneidensis, Ralstonia solanacearum, and Colwellia psychrerythraea, usually as part of a paralogous family. The function is unknown.	6.73715e-46
NZ_CP047267.1\|WP_024659749.1\|4429745_4430528_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	1.89478e-62
NZ_CP047267.1\|WP_024659748.1\|4430588_4431617_-\|alpha/beta-hydrolase	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	2.46215e-44

>NZ_CP047267.1|WP_003425465.1|4420549_4421413_+|lipoprotein
MQSLFKAFVTLLMTVALLAGCNQVGLAYRNLDVIIPWTLSDYLDMNSEQKGWLDVRLKQHLSWHCSTQLPEYLTWLDKLEDMVKTDQVTYEGLQARTSEAKEAIAKISKEITPSAVELLSRFDDKQVQEMQESFAKDQRKRENKYLDQPLERQIAERADRMQKRVTPWVGKLNQAQKDRIQAWSASLGEQNKAWIENRTRWQNLFLATVQQRQASDFPQRIAALLQDRETFWTPEYRKAYDQTEKAAISLIVDITALSTPEQRAKLLSRIADMRKDFTDLDCLKSQK
>NZ_CP047267.1|WP_011268648.1|4419751_4420480_+|hypothetical-protein
MLSHRLHVLSFSAMLVCQSVSAQVLERDLGDFDLKLATTPTRSMAQGLVTPTGGSGSFHGGMDLTHESGFYFGQWAPNMGLASDTGMELDSYMGFKKPFDNTLGYELGMIRYSYPDTSQIDSHEFYAGLRMRDSRIGAAFSNDVGTRDSTVFVDLGAIEQLGVGVRMQYANHQFDTPQSAADGGLINGFNDWSLNLSRPWLGIDMNLIYSGSSLSGGDCSVYSGHNARCDGTFTLKAVRSFF
>NZ_CP047267.1|WP_011268647.1|4419040_4419607_+|hypothetical-protein
MTTSWITLWTLSSLWNARMKNWMLFGALVYLGGCASHHCENGPNDSQLTDSPCRAEHLLYQNDMLQAKLLISEDNRENYELAEAMLRRAALDDASGEAEFYQAVLLIRQQADQKQIIDLLQTAAKHKHPLAIALLSQQLSVSDPKLAERYQSEYAQLDVAKSGYPSFEQALVVIRGLIIPSARTTAAN
>NZ_CP047267.1|WP_003425462.1|4418747_4418927_+|hypothetical-protein
MRIKASHSKAKPAPAVETSDSINAQIAAFLKSGGEIQQIAKGVSGQTFAPSKQINLGKK
>NZ_CP047267.1|WP_011268646.1|4417595_4418432_-|GntR-family-transcriptional-regulator
MALIGRYNSLQIVKHTNFGLYLDGAQDGEILLPNRYIPKDVPTEDEDWLNVFIYLDSEDKLLATTEKPKVQVGEFASLKVVEVNSIGVFLDWGLPKDLLLPYSEEKRTLQAGDYCVVHVYLDKHTRRITATARLDRYLDKTPANYSVGQEVDLLVAEATDMGFKAIINNKHWGLIHKNEVFKFMRAGKQEKGYIKEIRSDGNISLSLQPVGAEAASSLNSKILTKLRENNGTLPVSDKSDPQVISGLFGVSKGNFKKAIGALYKQGQIVIHADRIELV
>NZ_CP047267.1|WP_011268645.1|4416893_4417526_+|thioredoxin-domain-containing-protein
MNTVGPLKIDVWSDYVCPFCYLQLAVLEQLQQTYGERLEFNWHAFELRPDPLALLDPSADYLRETWSRSVLPMADRRQVMMKMPSVQPRSRKVLEAAVFARNAGGFEAFHKEAYRAFFEKGLDISETHTLLELATTTGLDRQAMEQALNAGHFEKAVLDDRQLAQKLGLRAVPVVLLRRSDEALEDARVFNGTLPFERLSQEIDALATWA
>NZ_CP047267.1|WP_011268644.1|4416347_4416749_-|DUF2177-family-protein
MKRILIAYFGTLLAFLILDGLWLGVLMGPTYREWLGPLMLDTPVLGPAIAFYLLYGAGVVFFGVMPALRVQRLSHATLCSGLLGLIAYGTYDLTNWATLQGWPAQLALVDHAWGTVVSALAGTAGYLAVRRFA
>NZ_CP047267.1|WP_003363371.1|4415889_4416270_+|hypothetical-protein
MKLDKKLAIARRNQDLGGAVLGVNNTHFAVLDHKRNIWWFDLPVPRLQVGQYEWLHLLLHTPETDQLLHLKVTTVFMRDHMEGLEVRNADKRKPTVSLELSADKDSFLKDMRPKGSNLSFAGFLQK
>NZ_CP047267.1|WP_003402493.1|4415485_4415677_-|CsbD-family-protein
MSSTSDKAKGMANEAVGNVKQAVGKATDNDKLQAEGKVQELKGEGQQTVGKVKDAIKKGVDKA
>NZ_CP047267.1|WP_011268643.1|4414296_4415262_-|YihY/virulence-factor-BrkB-family-protein
MIFPHLRKLKVGKVLVRTVNEFLDDEMSTYASALAYQMLFSLFPFLLFLIALIGFLHLPDFFSWLRLQSEFLLPPQALEQVNPVIDQLQQSKGGLLSIGIVIALWTASAGVRLMMSAMNAAYDVVEGRPIWKRLPLSILYTVGIAGMLLAAAAFMVLGPQVMNWIAAQIGMEDFIVTLWTILRWPAIIILLMVAVALIYYVMPDVKQEFRFITPGSVLAVVVWIVASLAFGFYVKTFADYNAMYGSIGAIIVLLLYFYISAAVLLLGAEMNAVIEHMSAEGKDAGEKEAGDGGEESSETVKQHVSGLGRDHSVPLQKADEA
>NZ_CP047267.1|WP_003402477.1|4422191_4423529_-|DEAD/DEAH-box-helicase
MFSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLKQSFERRVIKEVKGTYGGPKKVKASGKAVGVKKKKTDAKGDKKKVAAKGPTKRKTVNRPKSDLVSQDGMAPLKKRSTPAPAAE
>NZ_CP047267.1|WP_103359350.1|4423531_4423765_+|hypothetical-protein
MLPRRKTKIQLHSVTVSSAGAEFLYHQRPILFTNGRITAIRNAAKPLSAVTTPAAAHRPPDRRPADCVRRSARRAFR
>NZ_CP047267.1|WP_080267618.1|4423679_4424930_-|HAMP-domain-containing-protein
MRPNRLFWKLFLAFWLATSLTFMVGAGLFMFTQSGRGDPSFSTVLDNEVRILQRSGIAAGRALLDTWQPEGQGRVGLYDNQGLLLAGEALENPRFELAVHTREGALVHIRSTQRPNHDDQPSHLNPLITGTVMSALFSWFLSSYLVAPLMKLREAMGKVARGRFDTRVKPDMGRRRDEIVDLAEDCDRMANQLKVMADSQQQLLHDISHELRSPLTRMSAAIGLLRQEPSQLDMLERIERESERMDSLIEELLTLARMQSDVESLTREKVDVISLLAAIVEDAEFEAGLKQCRVRLQAPGSFVAQVDSELLYRAFENVIRNAVRHTAVGTDVVVVANVQAQPLCLMVNVIDQGPGVDEACLQRIFQPFERGPENAAQGFGLGLAIALRAIEMHGGQIAARNRPGGGLVVDVLLPVS
>NZ_CP047267.1|WP_024638938.1|4424926_4425616_-|response-regulator-transcription-factor
MTSVLLVDDDRELTEMLSQYLTRESFDVTCTNSAEEGEIEALSGRHDIVVLDIMMPRISGIEVLRRIRAQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRAVSVVDAVRDVIQAGELMLWPGKREARWQGATLELTGNEFCLLEELARHAGQLVSKQNLSMNALGRPLARYDRSIDVHISSIRHKLGPRNDNQSWIQSVRNLGYMLITP
>NZ_CP047267.1|WP_159372292.1|4425832_4428205_+|outer-membrane-protein-assembly-factor-BamA
MISSRLLLSFCLLISVPLAHADTFSISDIRVNGLQRVSAGSVFAALPLNVGDQADEQRLADASRSLFKTGFFQDINVARDGNVLVINVVERPSIASIEIVGNKVISTDDLMKGLKQSGLSEGEIFQRATLEGVRNELQRQYVSQGRYSASVDTQALPAPRNRIALKITIDEGTVASIQHINVVGNTVFSDEQLADQFQLKTSNWLSFFKNDDKYAREKLSGDLERLRSWYLDRGYINMDINSTQVSLTPDKKGVFITVNITEGDRYTVGSVKLGGDLKVPKDQLEQLILVKPGQVFSRKVMTDSSNLITRRLGNDGYTFANVNGLPKANVADHTVDISFVVDPGKRAYANRINFRGNTKTADEVLRREMRQMEGGWASTYLIDQSKVRLERLGFFKEVNVETPAVPGTDDQVDINYAVEEQASGNITASVGFSQSAGLILGGSISQNNILGTGNFASLGMTRSEYQTKYNFAFTNPYFTPDGVSLGYNVFYNATDYSKYYDDDDEVSYYSLNSVGAGVNLGYPISETSRLTYGLSIQRDTLDPGSYSADEIYDFIEREGDAFTNLKASVGWSESTLNKGVLATRGHSQSLTLTSTVPGSDLQFYKLDYNGQTFLPLSDTTSLRLHTKLGYGNGYGDTDGLPFYENYTAGGQATVRGFKDGTLGPRNTPATGAYASQGQIYYSDRDTEALGGNILISGGMEYLFPMPFVKDQKSLRTSLFWDFGTVYADKCYLTTTQNCGNINIDQMASSVGVGVTWYSPLGPLSFDLAVPIKKPEDAETQVFQFSLGQTF
>NZ_CP047267.1|WP_024659750.1|4428324_4428738_+|hypothetical-protein
MSREVRQITPDVQEIIQHALRSLLGKGFVIALFGSEDATGTMHYHLRIDHDATGLGIEHHDHVEDGFIDDIFMLATRMKAMLKQRETLSRMHGGSQATGQVRLLTWITEDNSQTVMQTAEAAGRECLSALRERRLRA
>NZ_CP047267.1|WP_024650581.1|4428757_4429657_-|LysR-family-transcriptional-regulator
MNNTLRRIDLNLLVTLDALLSEQNVTRAAHRLNLTQPTVSLQLGRLRQVLEDPLLLPGPRGMTPTARAEELREPLRQALAALESALLPGRDFDPATADHTWRVAASDYATIALIWPSLGRLRNSAPGTRLAMLNKHPVSLAADLESGRLDLALHTRDEAPPKLRQRSLIHERYVLAARHDHPDLAQPVSLTRFCELEHAVMSPNGGGFAGSTDQALAALGLSRRVVLSAPHFGSLVSALTCSDLVAVVPERLVRNQPTLVVQEPPLSIPGFEMLMLWPERLHRDPAHRWLRELMVAAID
>NZ_CP047267.1|WP_024659749.1|4429745_4430528_+|NAD(P)H-dependent-oxidoreductase
MNVLIVYAHPEPRSLNGSLKDFAVNHLQNNGHQVQVSDLYQMGWKAIIDANDAPGLETSSRFDPALESQRVFAAGIQPPDIEAEQAKLLWADAVIFQFPLWWFSMPAIMKGWIERVYACGFAYGVGEHSDQHWGDRYGEGTLAGKRAMLTVTMGGWESHYSERGVNGALNDVLFPIQHGILFYPGFDVLAPFPVYRAGKVDSTTFTRICADYGNRLDALFTLEPLPFRRQNDGDYEIPALTLRPELAAGRQGLDIHLRDQ
>NZ_CP047267.1|WP_024659748.1|4430588_4431617_-|alpha/beta-hydrolase
MKKILLMLGLLISSYAATGADMSHGADNFYTSDKVVAQKVLFNNQYKMKVAGNLFIPKGSNPNVKAPAIIVGHPMGAVKEQSANLYAQKLAEQGFVTLSLDLSFWGGSEGQPRNAVSPDLYAEDFSAAVDFLGTQTFVDKKRIGVLGICGSGSFVISAAKIDPRMKAIATVSMYDMGAANRNGLKHSQTLAQRKKIIEQAALQRDVEYSGGDTAYTSGTVHKLTDTSGPIEREFYDFYRTPRGEFTPEGQSPELTTHPTLTSNIKFMNFYPFNDIATISPRPMLFIAGSEAHSLEFSEEAYKLAGQPKQLIIVPEAGHVDLYDRVDLIPFDKLGEFFKNNLK
>NZ_CP047267.1|WP_024659747.1|4431613_4432876_-|MFS-transporter
MQAFDSTLKQSEITTHPPAWGAVFSMALCVVVLIASEFMPVSLLTPIAQDLGISQGQAGQAISISGFFAVLTSLLNTPLTGHLDRKPVLLGFSLLLLVSGVIVTLASNGWLFMTGRALLGIAIGGFWSMSTATVMKLVPKQSVAKGLALINGGNALAATVAAPLGSFMGQYIGWRGAFFLVIPLAALAFAWQWLSLPAMRSQPHNRARNPFRLLRNPQVAVGMSAILLLFMGQFAVFTYLRPFLEEITGVSVNTLSLMLLALGASGLVGTYLIGRLLHKGLYACLIVIPLLMAVLAVALTGLGHSPQAVAIVLAVWGLIATPAPVAWGLWLSRTLPDDAEAGGGLMVATIQLAITAGAGIGGALFDSLGWWSPFAFGGVLLACSAALAWTARDNALLQEKNTGQGRADKRGSISQRGNTP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP047267_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047267_4

5734748-5734834

Orphan

Consensus_repeat	Method
GGGCAGAATCAAGAGCGGACTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047267_4

>merge|NZ_CP047267|4|5734748-5734834|CRISPRCasFinder
GGGCAGAATCAAGAGCGGACTTGCGACCAACATCTTCGCGAACAAGTTGGCTCCCACGCCCGGAGGGCAGAATCAGGAGCGGACTTG

>NZ_CP047267|4|4|5734748-5734834|CRISPRCasFinder
GGGCAGAATCAAGAGCGGACTTG	CGACCAACATCTTCGCGAACAAGTTGGCTCCCACGCCCGGA
GGGCAGAATCAGGAGCGGACTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047267.1\|WP_110393175.1\|5727765_5728074_+\|DUF1534-domain-containing-protein	unknown	unknown	gnl\|CDD\|148905
NZ_CP047267.1\|WP_080278018.1\|5746197_5747277_-\|RHS-repeat-associated-core-domain-containing-protein	unknown	unknown	gnl\|CDD\|274730
NZ_CP047267.1\|WP_024660156.1\|5731666_5734054_+\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|376618
NZ_CP047267.1\|WP_011269267.1\|5728679_5729381_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|226274
NZ_CP047267.1\|WP_003372160.1\|5735734_5736655_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182646
NZ_CP047267.1\|WP_011269275.1\|5745491_5746166_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP047267.1\|WP_002555752.1\|5724224_5724890_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|182650
NZ_CP047267.1\|WP_024659814.1\|5739115_5740213_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP047267.1\|WP_004407356.1\|5734856_5735738_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182574
NZ_CP047267.1\|WP_024660157.1\|5730454_5731396_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP047267.1\|WP_011269271.1\|5736651_5737794_-\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NZ_CP047267.1\|WP_085990147.1\|5724970_5726389_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP047267.1\|WP_003420191.1\|5729456_5730215_+\|DUF2059-domain-containing-protein	unknown	unknown	gnl\|CDD\|378261
NZ_CP047267.1\|WP_002555767.1\|5741789_5743148_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP047267.1\|WP_002555754.1\|5726525_5727755_+\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
NZ_CP047267.1\|WP_024660158.1\|5730266_5730458_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047267.1\|WP_024659815.1\|5740356_5741721_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NZ_CP047267.1\|WP_003413528.1\|5743742_5745119_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP047267.1\|WP_011269266.1\|5728103_5728541_-\|DUF4399-domain-containing-protein	unknown	unknown	gnl\|CDD\|373020
NZ_CP047267.1\|WP_024659813.1\|5737849_5738944_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377

Protein	Function_ID	Function_description	E-value
NZ_CP047267.1\|WP_110393175.1\|5727765_5728074_+\|DUF1534-domain-containing-protein	gnl\|CDD\|148905	pfam07551, DUF1534, Protein of unknown function (DUF1534). This family is found in a group of small bacterial proteins. Its function is not known.	0.00248559
NZ_CP047267.1\|WP_080278018.1\|5746197_5747277_-\|RHS-repeat-associated-core-domain-containing-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	2.19612e-30
NZ_CP047267.1\|WP_024660156.1\|5731666_5734054_+\|penicillin-acylase-family-protein	gnl\|CDD\|376618	pfam01804, Penicil_amidase, Penicillin amidase. Penicillin amidase or penicillin acylase EC:3.5.1.11 catalyzes the hydrolysis of benzylpenicillin to phenylacetic acid and 6-aminopenicillanic acid (6-APA) a key intermediate in the the synthesis of penicillins. Also in the family is cephalosporin acylase and aculeacin A acylase which are involved in the synthesis of related peptide antibiotics.	0
NZ_CP047267.1\|WP_011269267.1\|5728679_5729381_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	6.51827e-48
NZ_CP047267.1\|WP_003372160.1\|5735734_5736655_-\|ABC-transporter-permease-subunit	gnl\|CDD\|182646	PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	9.92225e-152
NZ_CP047267.1\|WP_011269275.1\|5745491_5746166_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.62324e-09
NZ_CP047267.1\|WP_002555752.1\|5724224_5724890_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|182650	PRK10691, PRK10691, fumarylacetoacetate hydrolase family protein.	1.37822e-77
NZ_CP047267.1\|WP_024659814.1\|5739115_5740213_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP047267.1\|WP_004407356.1\|5734856_5735738_-\|ABC-transporter-permease-subunit	gnl\|CDD\|182574	PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	2.58132e-118
NZ_CP047267.1\|WP_024660157.1\|5730454_5731396_-\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	1.89777e-34
NZ_CP047267.1\|WP_011269271.1\|5736651_5737794_-\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NZ_CP047267.1\|WP_085990147.1\|5724970_5726389_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	6.58936e-125
NZ_CP047267.1\|WP_003420191.1\|5729456_5730215_+\|DUF2059-domain-containing-protein	gnl\|CDD\|378261	pfam09832, DUF2059, Uncharacterized protein conserved in bacteria (DUF2059). This domain, found in various prokaryotic proteins, has no known function.	0.00181793
NZ_CP047267.1\|WP_002555767.1\|5741789_5743148_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	3.38043e-153
NZ_CP047267.1\|WP_002555754.1\|5726525_5727755_+\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
NZ_CP047267.1\|WP_024659815.1\|5740356_5741721_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NZ_CP047267.1\|WP_003413528.1\|5743742_5745119_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	2.39638e-154
NZ_CP047267.1\|WP_011269266.1\|5728103_5728541_-\|DUF4399-domain-containing-protein	gnl\|CDD\|373020	pfam14347, DUF4399, Domain of unknown function (DUF4399). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 135 and 1079 amino acids in length.	2.62307e-47
NZ_CP047267.1\|WP_024659813.1\|5737849_5738944_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0

>NZ_CP047267.1|WP_024660156.1|5731666_5734054_+|penicillin-acylase-family-protein
MKRSLFILAIIIALLAGGAGWYVNSKLPVRDGEIAMSRLQAPVTLRYDERGVPHIRAENEADLYRALGYAQAQDRLFQMEMLRRLARGELAEVLGPNLLETDKLFRSLRIREHADAYVARQDKNTPTWKALEAYIDGINQYQDTHARPMEFDALGIPRRRFTPEDTVSIAGYLAYSFAAAFRTEPLLTYVRDQLGPEYLKVFDLDWHPDGMLDSKPALADADWKGLNQLAQLSHKALEDAGLPQFEGSNAWVISGSRTQSGKPILAGDPHIRFSVPSVWYEAQLSAPGFELYGHFPALNPFALLGHNMDFGWSLTMFQNDDVDLIAEKTNPDNPNQVWYHGQWVDMKRTEQQIAVKGQAPVTLTLLESPHGPIVNNVMGKNAGQAPIAMWWSFLVSANPVLDGFYEANRADTLDKMRSAAEKIQSPGLNIVWANAKGDIGWWAAAQLPIRPQGVNPTFILDGSTAQADKLGFYPFSANPHEENPARGYIVSANFQPLSPTGMQIPGYYNPAERGQELNRQLSDASVKWDLAASKALQLDTQTDYAPSILRPLIPVLRSVVSDPDELALVERLASWKGDYPVDSVGATLFNQFLFDLTEETFHDELGDAMFETLLSSRVMDAALPRLAADADSPWWNNRNSPHEESRANTVKVAWRASVSHLRSLYGTNPDEWVWGKAHTLTQGHPLGSQKPLDMIFNVGPYAAPGTHEVPNNLSSSIRPAPWPVGYGPSTRRLIDFADPAHSLGINPVGQSGVPFDKHYSDQAKAFVNGEYLPQRFSEKDVAEHTEGVLRLVPGA
>NZ_CP047267.1|WP_024660157.1|5730454_5731396_-|alpha/beta-hydrolase
MSATFDPDNLRASLLPLSVIDPLSMEGLAYQRFYGLAGLCGENVIRSWLGRLDVAGYEVVGQVWLPDSPVATLFLFHGFYDHMGLYRHVIEWALEQRFAVIACDLPGHGLSSGSRACINDFAEYQLVLQRLLLEAEGLGLPHPWHLCGQSMGGAIVTDHLLHQGADSPAQGEVILLAPLVRPRAWGWSRLSYHLLRPFVNGIARRFTENSNAPAFLPFLMADPLQPLRLPTAWVGALGQWIVRVESAPRSLRSPLIIQGEADMTVDWSHNLAILKDKFSQPQILMLGHARHHLANETPELRARYFDFLKGRLR
>NZ_CP047267.1|WP_024660158.1|5730266_5730458_+|hypothetical-protein
MKDSLALLATGILMAFFAWLFWSSLGQDAFAVFGALMLVITAVDNARLRRQVKALQAGKAEKV
>NZ_CP047267.1|WP_003420191.1|5729456_5730215_+|DUF2059-domain-containing-protein
MRRLFVLLLMFCTSPAWADSYDQLYKSAGWPEQRAHFNDALKAAQQRYSNNLPPAVYQALVNNSNQRFAPQAMDQRASKRLRESLKDPAPSLQFFQSPLGRKIVNAELTATRADQLAKHAQGLPHIEADATRQLLIGHLAQALPAREAGAEVSLAIAGVAADSLSQMIPGLFGGGQAQGMLEGQRERLMAQMSADLNNTLLYVYRDLSDPELEEFSTFAESPEGKAYYQAALAAIRAGLAVGQSASSLNPGQ
>NZ_CP047267.1|WP_011269267.1|5728679_5729381_-|2OG-Fe(II)-oxygenase
MKSRARDTACISLCPISELMDTMHAMRIPSDHPLLLRIVDDLAANGWSQQNIFLPEALTLELEQECRKRAAEGELEPAAIGKGPALEIREGIRGDRIQWLEPGQVQCCDRYLELMDSLRQALNRGLFLGLEDYESHFALYPPGARYLRHVDRFRDDDRRMVSAVLYLNSAWLPEHGGQLRMYLKDEVAYDVQPAGGCLVVFLSGEIPHEVMPASRDRLSLTGWFRRRGNELFQ
>NZ_CP047267.1|WP_011269266.1|5728103_5728541_-|DUF4399-domain-containing-protein
MKSLFSGTMVAGLLLSASMLASAADIPRTAAPEGAEVYIISPKDGETVTSPFKVQFGLKGMGVAPAGVDVPETGHHHLLIDVKDQPAMNAPLPVSDNIRHFGKGQTETEINLPPGQHTLQLLMGDKGHMPLNPSVESKKITINVK
>NZ_CP047267.1|WP_110393175.1|5727765_5728074_+|DUF1534-domain-containing-protein
MPTPCGHERCSCGHLSFLTLQHGNAVHDAPRRKRTQSVQKGMRRRASHDSCDNRSSRSSVGMPFTTLRVARGRRASRKACDAERRTIVAIIVPHAPAWECRS
>NZ_CP047267.1|WP_002555754.1|5726525_5727755_+|phosphoglycerate-dehydrogenase
MSKTSLDKSKIKFLLLEGVHQSAVDVLKAAGYTSIEYHTKSLPEAELKEKIADAHFIGIRSRTQLTEELFDCAKKLVAVGCFCIGTNQVDLNAARERGIAVFNAPYSNTRSVAELVLAEAILLLRGIPEKNASCHRGGWIKSAANSFEIRGKKLGIIGYGSIGTQLSVLAEGLGMQVYFYDTLTKLPLGNATQVSSLNELLGMSDIVTLHVPETSETQWMIGEKEIRAMKKGSILINAARGTVVELDALADAIKDKHLIGAAIDVFPVEPRSNDDIFESPLRGLDNVILTPHIGGSTAEAQANIGLEVAEKLVKYSDNGTSVSSVNFPEVALPAHPGKHRLLHIHENIPGVLSEINKVFAENGINISGQFLQTNEKVGYVVIDVDAEYSDLAQAKLQQIKGTIRSRVLF
>NZ_CP047267.1|WP_085990147.1|5724970_5726389_-|FAD-binding-oxidoreductase
MNRSRVDSMTDRVLIDELQTLVDPGKVLTDAGSLETYGKDWTKQFTPAPLAIVFPKTTEQVQAIVRWANERLVALVPSGGRTGLSAAAVAANGEVVVSFDYMNQVLDLNLTDRTAVCQPGVITRQLQALAEDNGLYYPVDFASSGSSQIGGNIGTNAGGIKVIRYGMTRNWVAGLKVVTGRGDLLELNKDLIKNATGYDLRQLFIGAEGTLGFVVEATMRLDRAPKNLTAMVLGTSDFNSIMPVLHAFHGKLDLTAFEFFSDKSFARVMARGDVPSPFDTPCPFYVLLEFEATTEDLADQALATFEHCVEQGWVLDGVMSQSEQQLRNLWKLREYISETISHFTPYKNDISVTVSKVPEFLAEIDAIVAEHYPDFEVLWYGHIGDGNLHLNILKPESLDKDEFFVKCARVNKWVFETVEKYNGSISAEHGVGMTKRDYLTYSRSPVEIEYMKALKAVFDPNGIMNPGKIFAV
>NZ_CP047267.1|WP_002555752.1|5724224_5724890_-|fumarylacetoacetate-hydrolase-family-protein
MSYQHKYVDGTNIHFPLGKVVCIGRNYAEHAKELGNAVPTEPLLFMKPGSAVVALEGGFTIPADRGSVHYEAEIVVLIGKPLSKNPSREEVLDAISGFAPGLDLTLRDVQSRLREKGLPWELAKCFDGAAVIPPFVPAETFPDLEDIGIRLTLNGKVVQDGNSNMMLNPIVPMIQHMAANFSLQAGDLIMTGTPAGVGPFEAGDQIALELVGQTPFESVVR
>NZ_CP047267.1|WP_004407356.1|5734856_5735738_-|ABC-transporter-permease-subunit
MNRFRFSNLMLVLGLLFIYAPMVILVIYSFNASQLVTVWGGWSVKWYVGLLDNSQLMGSVMRSLEIACYTAVAAVALGTMAAFVLTRISRFKGRTFFGGLVTAPLVMPEVITGLSLLLLFVAMAQMIGWPQERGIMTIWIAHTTFCAAYVAVVVSARLRELDLSIEEAAMDLGARPWKVFLLITIPMIAPSLAAGGMMSFALSLDDLVLASFVSGPGSTTLPMEVFSAVRLGVKPEINAVASLILLAVSLATFLVWFFTRRAENNRKRAIQQAIEESAADAWKQPDPRRAPAA
>NZ_CP047267.1|WP_003372160.1|5735734_5736655_-|ABC-transporter-permease-subunit
MKIRKIKRAFERIKPNGRQMVIGVPFLWLFLFFALPFLIVLKISFAEADVAIPPYTEIFSYADEKLQMVLNFANYTLLSGDDLYVSAYLGSLKMAFISTLLCLLIGYPMAYAIASARKDLQTVLLLLIMMPTWTAILIRVYAWMGILSNNGLLNAFLMWLGLIDAPLQILNTNLAVYIGVVYSYLPFMILPLYANLVKHDTSLLEAASDLGSSTFNSFWKITVPLSKNGVIAGCMLVFIPVVGEFVIPELLGGPETLMIGRVLWQEFFNNRDWPVASALAVIMLLVLIVPIILFNRSQAKELEGKA
>NZ_CP047267.1|WP_011269271.1|5736651_5737794_-|polyamine-ABC-transporter-ATP-binding-protein
MAVASGAYKKALEGGQQPKEVLVRIDRVTKKFDETIAVDDVSLQINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIYLDGVDITDMPPYERPINMMFQSYALFPHMTVADNIAFGLKQDKLGKPEIEARVAEMLKLVQMTQYAKRKPHQLSGGQRQRVALARSLAKKPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAERIAIMHLGWIAQIGSPIDIYETPTSRLVCEFIGSVNLFEGDVIEDMEAHALIRSPELERNIYVGHGVSTSVEDKHITYALRPEKLLITTEQPGFEYNWSRGKVHDIAYLGGHSVFYVELPGGKLVQSFVANAERQGARPTWGDEVYVWWEDDSGVVLRS
>NZ_CP047267.1|WP_024659813.1|5737849_5738944_-|polyamine-ABC-transporter-substrate-binding-protein
MSISILSKALLAAAGLTLTLSAQAESTVHIYNWSDYIGKTTLADFEATTGIKPMYDVFDSNETLEAKLLAGRTGYDVVVPSNHFLGKQIKAGAFQKLDKSLLPNYKNLDPALLKRLEKNDPGNQYAVPYLWGTNGIGYNVEKVKAVLGVDKIDSWAVLFEPENIKKLSSCGVAFLDSADEMLPAVLNYLGLDPNSTKEADYKEAEAKLMAIRPYVTYFHSSKYITDLANGDICVAAGFSGDVFQAKARAEEAGKGVKLAYSIPKEGGNLWFDMLAIPADSKNIKQASAFINYMLDPRVIAKVSDEVGYANPNPASGEFMDQKIRTDAAVYPPQEVLDRLFVNSELPPKVQRVMTRSWTKVKSGK
>NZ_CP047267.1|WP_024659814.1|5739115_5740213_-|polyamine-ABC-transporter-substrate-binding-protein
MKKFGKTLLALSLMGVVATAAQADDKVLHVYNWSDYIAPDTVAKFEKESGIKVVYDVFDSNETLEAKLLAGKSGYDVVVPSNNFLAKQIKAGVYQELDKSKLPNWKNLNESLLKAVSVSDPDNKHAFPYMWGSIGIGINPDKVKAALGADAPVNSWDLLFKPENAAKLKSCGISFLDSPTEMLPIALHYLGYPTDSQDKKQLAEAEALFMKIRPSIGYFHSSKYISDLANGNICVAVGYSGDIYQAKSRAAEAGGKVKVAYNIPKEGAGSFYDMVAIPKDAENVEGAYKFMNFLMRPEVMAEITNAVRFPNGNAAATALVDKEITSDPGVYPPADVQAKLYAIADLPAATQRIMTRSWTKIKSGK
>NZ_CP047267.1|WP_024659815.1|5740356_5741721_-|aspartate-aminotransferase-family-protein
MSANNPQTLEWQALSSEHHLAPFSDYKQLKEKGPRIITRAEGVYLWDSEGNKILDGMSGLWCVAIGYGREELADAASKQMRELPYYNLFFQTAHPPVLELAKAISDIAPEGMNHVFFTGSGSEGNDTMLRMVRHYWALKGQPNKKTIISRVNGYHGSTVAGASLGGMTYMHEQGDLPIPGVVHIPQPYWFGEGGDMTPDEFGIWAAEQLEKKILELGVENVGAFIAEPIQGAGGVIVPPDSYWPKIKEILSRYDILFAADEVICGFGRTSEWFGSDFYGLKPDMMTIAKGLTSGYVPMGGLIVRDEIVAVLNEGGDFNHGFTYSGHPVAAAVALENIRILREEKIVERVRSETAPYLQKRLRELSDHPLVGEVRGVGLLGAIELVKDKTTRERYTDKGAGMICRTFCFDNGLIMRAVGDTMIIAPPLVISFAEIDELVEKARKCLDLTLAVLQG
>NZ_CP047267.1|WP_002555767.1|5741789_5743148_-|glutamine-synthetase
MSTNLDQLTDWLKEHKITEVECMMSDLTGITRGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYELLDPADIDMICRPDQNAVYLVPWAVEPTAQVIHDTYDKQGNPIELSPRNVLKKVLKLYADQGWQPIVAPEMEFYLTKRSDDPDYPLQPPIGRSGRPETGRQSFSIEAANEFDPLFEDVYDWCELQNLDLDTLIHEDGTAQMEINFRHGDALSLADQILVFKRTMREAALKHDVAATFMAKPMTGEPGSAMHLHQSIIDIETGKNIFSNEDGTMSELFLNHVGGLQKFIPELLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDAVPQNRRVENRLPGADANPYLAIAASLLCGFIGMVEGINPSAPVVGRGYERRNLRLPLTIEDALERMENSKTIEKYLGKKFIIGYVAVKRAEHENFKRVISSWEREFLLFAV
>NZ_CP047267.1|WP_003413528.1|5743742_5745119_+|glutamine-synthetase
MSVPPRAVQLNEANAFLKEHPEVLYVDLLIADMNGVVRGKRIERTSLHKVYEKGINLPASLFALDINGSTVESTGLGLDIGDADRICYPIPDTLCNEPWQKRPTAQLLMTMHELEGDPFFADPREVLRQVVAKFDEMGLTICAAFELEFYLIDQENVNGRPQPPRSPISGKRPHSTQVYLIDDLDEYVDCLQDILEGAKEQGIPADAIVKESAPAQFEVNLHHVADAIKACDYAVLLKRLIKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISILDRDGKNIFTSEDPEQNAALRHAIGGVLETLPAQMAFLCPNVNSYRRFGAQFYVPNSPTWGLDNRTVAVRVPTGTADAVRIEHRVAGADANPYLVMASVLAGVHHGLVNKVEPGAPVEGNSYEQHEQSLPNNLRDALRELDDNPVMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NZ_CP047267.1|WP_011269275.1|5745491_5746166_+|TetR/AcrR-family-transcriptional-regulator
MPAAQPRATPMTRAATPRKPQARSQARIDSILDAARTLLAEQGVASLSIYSVAERAGIPPSSVYHFFASVPALLEALTADIHAAFRASLQAPIDHDQLTTWRDLSRIVELRMLAIYNADAAARQLILAQHGLTEINQADRQHDIELGHLMLEVFDRHFQLPALPDDVDVFALAMELGDRVYARSVQLHDEITPRMAEEGMRVFDAYLGLYLPVFLVKRKISPLQ
>NZ_CP047267.1|WP_080278018.1|5746197_5747277_-|RHS-repeat-associated-core-domain-containing-protein
MASLDPIMLCTYRYDPLDRLASSSPVGRADVQRFYQKNRLATEIEGASRRTVFQHEDLLLAQQRHVDGVVDTTLLATDQQRSVLRLVDEAGIEPVAYSPYGHHPAESGLTSLLGFNGERRDPVTGHYLLGNGYRAYNPVLMRFNSPDSLSPFDEGGLNAYGYCGGDPIGFVDPSGHAPYNRLLRRALENARLKSPSRKDRISTRLLRVLGKRSEAPPSREGKPLPISPLASTSAASSPPPSTTSTLQAPDKGRPAMTTPAMTWEYRVKKAEEFHHPVSTAVPTDFEVAKIYLERHLKRLLDVENTILFYKSNRAVDTGNFIEAGPSQFYKAILLRDINAFKVYAAGMSRKHRKAIRKQR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1314890 : 1380262

uncultured_Caudovirales_phage(45.24%)

portal,holin,tail,integrase,head,plate,capsid,terminase,tRNA

attL 1306102:1306117|attR 1348735:1348750

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1306102:1306117	attL	NA	NA	NA	NA
WP_080267591.1\|1314890_1315724_+\|integrase	site-specific integrase	A0A0A0YR56	Pseudomonas_phage	1.2e-92	63.8
WP_024659966.1\|1315938_1316706_+	hypothetical protein	NA	NA	NA	NA
WP_024659965.1\|1316943_1317267_-	hypothetical protein	NA	NA	NA	NA
WP_159372248.1\|1317880_1319914_-	DNA cytosine methyltransferase	Q5QF27	Pseudomonas_virus	4.5e-231	60.8
WP_024659825.1\|1319910_1320402_-	hypothetical protein	NA	NA	NA	NA
WP_024659826.1\|1320502_1320745_-	transcriptional regulator	A0A2H4J8B4	uncultured_Caudovirales_phage	2.9e-20	61.2
WP_024659827.1\|1320741_1321116_-	hypothetical protein	A0A2H4J897	uncultured_Caudovirales_phage	5.4e-42	69.4
WP_024659828.1\|1321112_1321349_-	hypothetical protein	A0A2H4JBX5	uncultured_Caudovirales_phage	1.8e-19	59.5
WP_024659829.1\|1321398_1321971_-	deoxynucleotide monophosphate kinase	A0A2H4J8A1	uncultured_Caudovirales_phage	4.1e-65	64.7
WP_024659830.1\|1322238_1322610_-	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_024659831.1\|1322673_1323390_-	hypothetical protein	A0A0U4JEE2	Pseudomonas_phage	1.0e-36	40.6
WP_024659832.1\|1323490_1323718_+	hypothetical protein	A0A0R6PIJ0	Moraxella_phage	1.9e-10	44.3
WP_024659833.1\|1323945_1324434_+	hypothetical protein	A0A2H4JFM0	uncultured_Caudovirales_phage	1.3e-35	59.4
WP_024659834.1\|1324426_1324633_+	transcriptional regulator	A0A0M3LQ09	Mannheimia_phage	3.9e-10	44.1
WP_024659835.1\|1324629_1327323_+	DNA primase	A0A2H4JF22	uncultured_Caudovirales_phage	0.0e+00	76.4
WP_024659836.1\|1327651_1328134_+	hypothetical protein	NA	NA	NA	NA
WP_024659837.1\|1328482_1329556_+	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_003377395.1\|1330023_1330347_+\|holin	phage holin, lambda family	A0A1V0DYG4	Shewanella_phage	4.0e-09	39.0
WP_159372249.1\|1330343_1330730_+	hypothetical protein	NA	NA	NA	NA
WP_004407095.1\|1330731_1330878_+	hypothetical protein	NA	NA	NA	NA
WP_024659869.1\|1331034_1331556_+	DNA packaging protein	A0A2D1GMW4	Marinobacter_phage	6.2e-20	38.5
WP_024659870.1\|1331599_1333489_+\|terminase	phage terminase large subunit family protein	A0A2D1GMT1	Marinobacter_phage	2.1e-166	50.9
WP_004663043.1\|1333499_1333715_+	hypothetical protein	NA	NA	NA	NA
WP_024659871.1\|1333717_1335319_+\|portal	phage portal protein	A0A067ZJA4	Vibrio_phage	4.8e-95	39.4
WP_024659872.1\|1335321_1336554_+	S49 family peptidase	A0A2H4EXF7	Aeromonas_phage	1.4e-46	41.6
WP_010205763.1\|1336567_1336918_+\|head	head decoration protein	NA	NA	NA	NA
WP_005619096.1\|1336930_1337959_+\|capsid	major capsid protein	A0A0C5ABI0	Bacteriophage	1.8e-71	42.2
WP_024659873.1\|1337960_1338182_+	hypothetical protein	NA	NA	NA	NA
WP_024659874.1\|1338184_1338499_+	hypothetical protein	NA	NA	NA	NA
WP_024659875.1\|1338495_1339146_+	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	7.2e-66	57.5
WP_024659876.1\|1339138_1339666_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	1.9e-53	59.4
WP_159372250.1\|1339665_1340250_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	3.9e-55	76.9
WP_159372251.1\|1340292_1340571_+	hypothetical protein	NA	NA	NA	NA
WP_159372252.1\|1340574_1340901_+\|plate	phage baseplate protein	A0A2H4JA09	uncultured_Caudovirales_phage	2.1e-34	64.8
WP_159372253.1\|1340897_1341779_+\|plate	baseplate assembly protein	A0A2H4JFK9	uncultured_Caudovirales_phage	3.9e-99	64.0
WP_024660490.1\|1341780_1342386_+\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	3.6e-80	70.9
WP_159372254.1\|1342382_1344452_+\|tail	phage tail protein	A0A077K818	Ralstonia_phage	1.3e-84	53.5
WP_159372255.1\|1344460_1345003_+\|tail	phage tail protein	NA	NA	NA	NA
WP_159372256.1\|1345096_1346260_+\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	4.0e-184	83.4
WP_017698634.1\|1346272_1346782_+\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	7.8e-68	74.9
WP_159372257.1\|1346797_1347100_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_159372258.1\|1347238_1349980_+\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	1.4e-99	40.2
1348735:1348750	attR	NA	NA	NA	NA
WP_080267632.1\|1350070_1350835_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	7.1e-97	68.0
WP_024660331.1\|1350809_1351016_+\|tail	phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	5.8e-22	71.6
WP_024660330.1\|1351108_1352152_+	phage late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	5.8e-142	75.3
WP_024660329.1\|1352190_1352736_+	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	6.4e-68	71.1
WP_159372259.1\|1352939_1353734_+	DNA adenine methylase	C7BGE1	Burkholderia_phage	1.4e-100	65.8
WP_080267530.1\|1353821_1354457_+	hypothetical protein	NA	NA	NA	NA
WP_159372260.1\|1354461_1354764_+	hypothetical protein	NA	NA	NA	NA
WP_159372261.1\|1354827_1355322_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_080267619.1\|1356666_1356849_+	DNA-directed DNA polymerase	A0A218MNF2	uncultured_virus	8.5e-09	76.5
WP_159372262.1\|1356935_1358435_+	calcium-binding protein	NA	NA	NA	NA
WP_004406511.1\|1359849_1360914_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_011266903.1\|1360910_1362044_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	3.4e-95	49.3
WP_002552468.1\|1362097_1362433_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	2.2e-10	44.6
WP_004406506.1\|1362496_1364365_+	protein translocase subunit SecD	NA	NA	NA	NA
WP_004666079.1\|1364374_1365286_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	2.9e-49	41.7
WP_003421912.1\|1365394_1365934_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_003314166.1\|1366001_1366817_-	inositol monophosphatase	NA	NA	NA	NA
WP_024660533.1\|1367032_1367797_+\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_024660534.1\|1367796_1368573_+	serine O-acetyltransferase	NA	NA	NA	NA
WP_002552474.1\|1368731_1369223_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
WP_003365095.1\|1369267_1370482_+	IscS subfamily cysteine desulfurase	A0A1X7C038	Faustovirus	1.3e-31	30.5
WP_002552476.1\|1370563_1370950_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	2.7e-52	78.2
WP_003365093.1\|1371021_1371345_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	6.8e-25	51.4
WP_003339753.1\|1371355_1371877_+	co-chaperone HscB	NA	NA	NA	NA
WP_024660535.1\|1371921_1373784_+	Fe-S protein assembly chaperone HscA	F2Y2E1	Organic_Lake_phycodnavirus	8.6e-104	40.3
WP_004406488.1\|1373787_1374129_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_003415412.1\|1374143_1374344_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_002552482.1\|1374440_1374866_+	nucleoside-diphosphate kinase	A0A167REB2	Powai_lake_megavirus	2.2e-15	36.4
WP_011266908.1\|1374899_1376048_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA
WP_003409116.1\|1376074_1376833_+	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA
WP_024660536.1\|1376832_1377837_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003339743.1\|1377840_1378950_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_003409119.1\|1378972_1380262_+\|tRNA	histidine--tRNA ligase	A0A2I2L577	Orpheovirus	3.3e-22	24.2

DBSCAN-SWA_2

3299710 : 3360347

Pseudomonas_phage(54.0%)

tail,integrase,head,terminase,tRNA

attL 3293539:3293555|attR 3308760:3308776

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3293539:3293555	attL	NA	NA	NA	NA
WP_024660817.1\|3299710_3301210_-\|tRNA	methionine--tRNA ligase	NA	NA	NA	NA
WP_003400967.1\|3301202_3301595_-	cupin domain-containing protein	NA	NA	NA	NA
WP_003370754.1\|3301928_3302894_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_024660818.1\|3303117_3303582_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_003400957.1\|3303587_3304571_-	oxidoreductase	NA	NA	NA	NA
WP_024660819.1\|3304620_3305280_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_024660820.1\|3306595_3307363_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003400950.1\|3307363_3308044_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_024651061.1\|3308047_3309136_+	molybdenum ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.0e-20	31.3
3308760:3308776	attR	NA	NA	NA	NA
WP_024660821.1\|3309225_3310296_+	DNA topoisomerase IB	A0A0G2Y4T8	Acanthamoeba_polyphaga_mimivirus	1.3e-43	33.7
WP_024660822.1\|3310735_3311098_+	hypothetical protein	NA	NA	NA	NA
WP_024660823.1\|3311144_3312425_-	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	3.3e-107	48.1
WP_032661965.1\|3312411_3312843_-	translesion error-prone DNA polymerase V autoproteolytic subunit	F1C5A6	Cronobacter_phage	9.7e-19	44.1
WP_159372284.1\|3312964_3313654_+	hypothetical protein	A0A2H4J5W2	uncultured_Caudovirales_phage	1.3e-57	48.9
WP_024660177.1\|3313682_3314924_-	hypothetical protein	A0A059VA35	Pseudomonas_phage	2.5e-208	87.7
WP_010439676.1\|3314920_3315133_-	hypothetical protein	A0A059VK06	Pseudomonas_phage	1.5e-09	51.4
WP_024660178.1\|3315145_3315673_-	DUF2514 domain-containing protein	A0A059VF51	Pseudomonas_phage	1.3e-65	85.1
WP_024660179.1\|3315669_3316215_-	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	1.9e-75	76.8
WP_024660180.1\|3316408_3317134_+	hypothetical protein	NA	NA	NA	NA
WP_024660181.1\|3317151_3318486_-\|tail	tail fiber domain-containing protein	A0A0S2SY45	Pseudomonas_phage	9.7e-25	40.8
WP_024660182.1\|3318502_3319369_-	hypothetical protein	NA	NA	NA	NA
WP_024650656.1\|3319368_3319671_-	hypothetical protein	NA	NA	NA	NA
WP_024660183.1\|3319672_3323377_-\|tail	phage tail protein	A0A2H4J8Z6	uncultured_Caudovirales_phage	0.0e+00	59.8
WP_024660184.1\|3323434_3324013_-\|tail	tail assembly protein	A0A2H4J1H0	uncultured_Caudovirales_phage	6.6e-87	82.8
WP_024660185.1\|3324081_3324318_-	hypothetical protein	NA	NA	NA	NA
WP_024660186.1\|3324386_3324854_+	hypothetical protein	NA	NA	NA	NA
WP_024660187.1\|3324874_3325639_-	C40 family peptidase	A0A2H4J1J7	uncultured_Caudovirales_phage	2.3e-127	80.9
WP_010430574.1\|3325641_3326391_-\|tail	phage minor tail protein L	A0A2H4J4Q5	uncultured_Caudovirales_phage	1.6e-125	84.7
WP_024660188.1\|3326400_3326739_-\|tail	phage tail protein	A0A2H4JI07	uncultured_Caudovirales_phage	4.9e-50	79.5
WP_024660189.1\|3326741_3330197_-\|tail	phage tail tape measure protein	A0A1B0VMG8	Pseudomonas_phage	1.5e-194	46.7
WP_003393134.1\|3330207_3330456_-	hypothetical protein	A0A2H4J4F7	uncultured_Caudovirales_phage	1.7e-23	67.1
WP_024660190.1\|3330518_3330902_-	hypothetical protein	A0A2H4J9Y6	uncultured_Caudovirales_phage	4.7e-41	63.0
WP_024660191.1\|3330905_3331562_-\|tail	phage tail protein	A0A2H4J6K6	uncultured_Caudovirales_phage	3.4e-100	86.2
WP_024660192.1\|3331633_3332044_-	hypothetical protein	A0A2H4J130	uncultured_Caudovirales_phage	5.4e-35	55.6
WP_024660193.1\|3332040_3332697_-	hypothetical protein	A0A1B0VMI1	Pseudomonas_phage	4.2e-82	70.2
WP_024660194.1\|3332693_3333062_-	hypothetical protein	A0A1B0VRJ4	Pseudomonas_phage	2.0e-41	69.2
WP_024660195.1\|3333084_3333402_+	hypothetical protein	NA	NA	NA	NA
WP_024660196.1\|3333402_3333903_-	hypothetical protein	A0A1B0VND3	Pseudomonas_phage	2.1e-65	76.4
WP_024660197.1\|3333906_3334356_-	hypothetical protein	NA	NA	NA	NA
WP_024660198.1\|3334380_3335331_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	1.7e-156	87.9
WP_024660199.1\|3335343_3336072_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	6.9e-118	92.1
WP_024660200.1\|3336228_3336810_+	hypothetical protein	NA	NA	NA	NA
WP_024660201.1\|3336817_3337906_-\|head	head morphogenesis protein	A0A1B0VMF3	Pseudomonas_phage	1.6e-150	73.5
WP_024660202.1\|3337880_3339302_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	6.8e-218	77.8
WP_024660203.1\|3339298_3340600_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	5.3e-145	59.0
WP_024660204.1\|3340586_3341048_-	DUF2280 domain-containing protein	A0A1B0VMH2	Pseudomonas_phage	9.0e-47	75.0
WP_024660205.1\|3341079_3341688_-	hypothetical protein	A0A1B0VRJ1	Pseudomonas_phage	1.3e-96	82.6
WP_024660206.1\|3341782_3342262_-	hypothetical protein	NA	NA	NA	NA
WP_016567853.1\|3342661_3342892_-	hypothetical protein	A0A1S6UB66	Serratia_phage	2.2e-17	63.4
WP_024660208.1\|3342947_3343286_-	hypothetical protein	A0A059VJW1	Pseudomonas_phage	6.2e-29	77.2
WP_024660209.1\|3343285_3343657_-	hypothetical protein	A0A059VK40	Pseudomonas_phage	1.3e-43	75.6
WP_024660210.1\|3343716_3344460_-	hypothetical protein	NA	NA	NA	NA
WP_024660211.1\|3344576_3345158_-	hypothetical protein	A0A059VF83	Pseudomonas_phage	1.2e-107	95.9
WP_024660212.1\|3345154_3345736_-	bacteriophage lambda NinG family protein	A0A059VA66	Pseudomonas_phage	2.6e-99	91.0
WP_024660213.1\|3345735_3346134_-	NinB family protein	A0A059VG13	Pseudomonas_phage	1.3e-70	97.0
WP_024660214.1\|3346224_3346506_-	hypothetical protein	A0A220NQX3	Salmonella_phage	1.8e-05	34.8
WP_024660215.1\|3346502_3347300_-	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	4.6e-91	68.1
WP_024660216.1\|3347286_3348264_-	hypothetical protein	A0A1B0VME0	Pseudomonas_phage	2.2e-111	67.1
WP_024660217.1\|3348297_3348720_-	Rha family transcriptional regulator	A0A2D1GNM7	Pseudomonas_phage	2.1e-50	69.3
WP_010430462.1\|3348802_3349018_-	transcriptional regulator	A0A125RNS7	Pseudomonas_phage	4.2e-23	71.8
WP_024660218.1\|3349105_3349768_+	helix-turn-helix domain-containing protein	K7P850	Enterobacteria_phage	1.8e-43	46.1
WP_080267620.1\|3349780_3350053_+	hypothetical protein	NA	NA	NA	NA
WP_080267621.1\|3350074_3350395_+	hypothetical protein	NA	NA	NA	NA
WP_024660222.1\|3350699_3351032_+	hypothetical protein	A0A222YZ97	Escherichia_phage	3.0e-20	48.2
WP_024660223.1\|3351121_3351370_+	hypothetical protein	NA	NA	NA	NA
WP_024660224.1\|3351359_3351995_+	hypothetical protein	NA	NA	NA	NA
WP_024660225.1\|3352251_3352515_-	DUF1652 domain-containing protein	NA	NA	NA	NA
WP_024660226.1\|3353111_3353306_+	hypothetical protein	A0A1B0VN94	Pseudomonas_phage	8.2e-26	85.2
WP_024660227.1\|3353326_3353734_+	hypothetical protein	NA	NA	NA	NA
WP_016567834.1\|3353730_3353922_+	hypothetical protein	A0A1B0VMB8	Pseudomonas_phage	7.8e-13	60.3
WP_024660228.1\|3354445_3355603_+	hypothetical protein	A0A1B0VN89	Pseudomonas_phage	1.4e-75	76.6
WP_024660229.1\|3355610_3356375_+	ERF family protein	K4NWX3	Pseudomonas_phage	9.4e-49	51.7
WP_024660230.1\|3356371_3357139_+	recombinase	A0A0M3LPU0	Mannheimia_phage	2.0e-11	28.3
WP_024660231.1\|3357135_3357375_+	hypothetical protein	NA	NA	NA	NA
WP_024660232.1\|3357371_3357830_+	hypothetical protein	A0A2H4J101	uncultured_Caudovirales_phage	7.6e-38	50.7
WP_024660233.1\|3357937_3358699_-	hypothetical protein	NA	NA	NA	NA
WP_152533587.1\|3358789_3358984_-	hypothetical protein	NA	NA	NA	NA
WP_024660235.1\|3359137_3359491_+	hypothetical protein	NA	NA	NA	NA
WP_024660236.1\|3359531_3360347_+	DUF2303 family protein	K7ZMK3	Xanthomonas_citri_phage	1.6e-46	39.9

DBSCAN-SWA_3

3725401 : 3735858

uncultured_Caudovirales_phage(75.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002553978.1\|3725401_3726073_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	8.7e-107	92.8
WP_024660441.1\|3726425_3727334_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011268261.1\|3727319_3728099_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011268262.1\|3728115_3729417_-	MFS transporter	Q6JIH2	Burkholderia_virus	4.1e-60	36.0
WP_011268263.1\|3729651_3730044_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	3.7e-57	82.3
WP_024642107.1\|3730045_3730408_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	3.3e-36	60.8
WP_024642108.1\|3730407_3730707_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	3.2e-29	62.6
WP_003317943.1\|3730703_3731039_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.2e-43	78.4
WP_024660442.1\|3731035_3732037_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.0e-164	84.5
WP_024639669.1\|3732133_3733132_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003405073.1\|3733182_3734577_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003317946.1\|3734577_3735858_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.1e-97	45.8

DBSCAN-SWA_4

5331686 : 5413457

uncultured_Caudovirales_phage(46.77%)

portal,holin,tail,lysis,protease,integrase,head,plate,capsid,terminase,transposase,tRNA

attL 5374502:5374517|attR 5404929:5404944

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024639964.1\|5331686_5332898_-\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA
WP_011103218.1\|5333001_5333103_+	hypothetical protein	NA	NA	NA	NA
WP_003401947.1\|5333099_5334527_+	peptidoglycan DD-metalloendopeptidase family protein	A8ATH6	Listeria_phage	4.2e-18	44.7
WP_003401948.1\|5334530_5335625_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_002551953.1\|5335687_5336038_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	7.4e-25	50.5
WP_011269099.1\|5336316_5337351_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_003401951.1\|5337484_5337913_+	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_003401952.1\|5337998_5338913_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_024659392.1\|5338969_5339746_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_003316306.1\|5339849_5340188_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_011269103.1\|5340309_5340957_+	2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	NA	NA	NA	NA
WP_003316303.1\|5341026_5341821_-	adenosylmethionine decarboxylase	NA	NA	NA	NA
WP_003401957.1\|5342063_5342486_-	OsmC family protein	NA	NA	NA	NA
WP_003401959.1\|5342687_5343332_+	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA
WP_024640874.1\|5343343_5344039_-	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_011269105.1\|5344073_5344910_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.0e-68	56.2
WP_024640873.1\|5344906_5345956_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.2e-110	57.7
WP_003394873.1\|5345977_5346577_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.0e-74	64.7
WP_159372329.1\|5347023_5347077_-	hypothetical protein	NA	NA	NA	NA
WP_152533569.1\|5347907_5349293_+	hypothetical protein	NA	NA	NA	NA
WP_050586782.1\|5349388_5349697_+	hypothetical protein	A0A2H4J991	uncultured_Caudovirales_phage	8.2e-20	59.0
WP_024659396.1\|5349809_5350304_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_080267530.1\|5350674_5351310_-	hypothetical protein	NA	NA	NA	NA
WP_159372305.1\|5351397_5352192_-	DNA adenine methylase	C7BGE1	Burkholderia_phage	1.7e-101	66.2
WP_159372306.1\|5352390_5352939_-	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	2.6e-69	71.7
WP_024660113.1\|5352976_5354020_-	phage late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	2.7e-147	78.0
WP_024660114.1\|5354110_5354317_-\|tail	phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.4e-23	76.1
WP_080267610.1\|5354291_5355056_-\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	4.6e-96	68.0
WP_024660116.1\|5355146_5357900_-\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	1.0e-108	42.1
WP_024660117.1\|5358038_5358341_-\|tail	phage tail assembly protein	A0A2H4J873	uncultured_Caudovirales_phage	2.5e-21	59.1
WP_024670873.1\|5358356_5358866_-\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	5.4e-69	74.3
WP_159372307.1\|5358878_5360042_-\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	4.4e-183	82.4
WP_159372308.1\|5360135_5360678_-\|tail	phage tail protein	NA	NA	NA	NA
WP_084917330.1\|5363019_5363625_-\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	1.3e-80	70.9
WP_084917333.1\|5363626_5364508_-\|plate	baseplate assembly protein	A0A2H4JFK9	uncultured_Caudovirales_phage	5.1e-99	63.7
WP_024660487.1\|5364504_5364831_-	hypothetical protein	A0A2H4JA09	uncultured_Caudovirales_phage	2.8e-34	64.8
WP_024660488.1\|5364834_5365113_-	hypothetical protein	A0A2H4J885	uncultured_Caudovirales_phage	1.2e-06	50.7
WP_159372309.1\|5365155_5365740_-\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	2.4e-52	77.4
WP_159372310.1\|5365739_5366267_-	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	1.4e-51	57.1
WP_159372311.1\|5366259_5366916_-	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	1.0e-72	65.0
WP_024660063.1\|5366912_5367227_-	hypothetical protein	A0A2H4J879	uncultured_Caudovirales_phage	1.7e-28	59.2
WP_024660062.1\|5367229_5368225_-\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	6.5e-159	81.9
WP_024660061.1\|5368312_5368657_-\|head	head decoration protein	A0A2H4JF15	uncultured_Caudovirales_phage	7.7e-35	70.2
WP_024660060.1\|5368653_5369805_-\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	2.3e-131	66.8
WP_024660059.1\|5369801_5371283_-\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	3.1e-221	77.0
WP_003377401.1\|5371279_5371486_-	hypothetical protein	A0A2H4JA19	uncultured_Caudovirales_phage	1.5e-22	77.9
WP_024660058.1\|5371487_5373509_-\|terminase	phage terminase large subunit family protein	A0A2H4J898	uncultured_Caudovirales_phage	0.0e+00	78.3
WP_024660057.1\|5373513_5374083_-	hypothetical protein	A0A2H4JG15	uncultured_Caudovirales_phage	2.2e-63	65.3
WP_077528301.1\|5374309_5374456_-	hypothetical protein	NA	NA	NA	NA
WP_159372312.1\|5374457_5374844_-	hypothetical protein	NA	NA	NA	NA
5374502:5374517	attL	NA	NA	NA	NA
WP_003377395.1\|5374840_5375164_-\|holin	phage holin, lambda family	A0A1V0DYG4	Shewanella_phage	4.0e-09	39.0
WP_024659800.1\|5375690_5376050_-	hypothetical protein	NA	NA	NA	NA
WP_024659801.1\|5376042_5378262_-	toprim domain-containing protein	A0A2D1GN57	Marinobacter_phage	2.1e-189	46.4
WP_024659802.1\|5378251_5378479_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_080267576.1\|5378471_5379071_-	hypothetical protein	NA	NA	NA	NA
WP_024659805.1\|5379644_5380388_+	peptidase S24	A8CGC0	Salmonella_phage	1.4e-28	37.4
WP_024659806.1\|5380397_5381522_-	hypothetical protein	A0A2H4J138	uncultured_Caudovirales_phage	9.6e-42	32.1
WP_024659807.1\|5381524_5382121_-	hypothetical protein	A0A2H4J137	uncultured_Caudovirales_phage	1.4e-23	36.1
WP_024659808.1\|5382451_5383027_+	hypothetical protein	NA	NA	NA	NA
WP_024659809.1\|5383035_5383320_+	DNA-binding protein	NA	NA	NA	NA
WP_024659810.1\|5383460_5383835_+	hypothetical protein	NA	NA	NA	NA
WP_005896747.1\|5383831_5384155_+	transcriptional regulator	NA	NA	NA	NA
WP_024659811.1\|5384205_5384628_+	hypothetical protein	NA	NA	NA	NA
WP_024659812.1\|5384624_5385326_+	hypothetical protein	NA	NA	NA	NA
WP_159372313.1\|5385322_5387347_+	DNA cytosine methyltransferase	Q5QF27	Pseudomonas_virus	3.5e-220	58.0
WP_024661068.1\|5387343_5387664_+	hypothetical protein	NA	NA	NA	NA
WP_024661069.1\|5387660_5388515_+	DNA adenine methylase	Q5QF26	Pseudomonas_virus	4.0e-72	50.9
WP_024661070.1\|5388511_5388712_+	AlpA family transcriptional regulator	B7SYF9	Stenotrophomonas_phage	7.4e-06	47.4
WP_152533617.1\|5388715_5388976_-	hypothetical protein	NA	NA	NA	NA
WP_024661071.1\|5389007_5390195_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	1.8e-70	37.7
WP_080267744.1\|5390788_5391286_-\|lysis	lysis protein	B5TK84	Pseudomonas_phage	5.0e-27	47.8
WP_003401974.1\|5391297_5391843_-	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	2.6e-69	73.3
WP_024643155.1\|5392075_5392573_-\|tail	tail fiber assembly protein	NA	NA	NA	NA
WP_024639975.1\|5392927_5393494_-\|tail	phage tail protein	B5TK80	Pseudomonas_phage	1.5e-43	46.4
WP_080267745.1\|5393501_5394827_-\|tail	phage tail protein	B5TK79	Pseudomonas_phage	8.6e-74	51.0
WP_024661073.1\|5394975_5395575_-	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	1.4e-84	71.9
WP_003401993.1\|5395562_5396603_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	5.4e-132	70.1
WP_024643159.1\|5396592_5396991_-	hypothetical protein	B5TK74	Pseudomonas_phage	3.4e-42	62.9
WP_003372720.1\|5396987_5397500_-\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	1.4e-64	73.8
WP_003401994.1\|5397496_5398624_-	hypothetical protein	B5TK72	Pseudomonas_phage	2.7e-113	60.2
WP_024661074.1\|5398627_5400052_-	2-hydroxyacid dehydrogenase	B5TK71	Pseudomonas_phage	4.4e-108	45.3
WP_024661075.1\|5400048_5402208_-\|tail	phage tail tape measure protein	U5P420	Shigella_phage	2.9e-71	40.2
WP_003316280.1\|5402338_5402635_-\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	4.3e-34	76.0
WP_024661076.1\|5402631_5402979_-\|tail	phage tail protein	B5TK68	Pseudomonas_phage	1.9e-41	69.6
WP_024652213.1\|5403039_5404536_-\|tail	tail sheath protein	B5TK67	Pseudomonas_phage	3.2e-234	80.3
WP_003394899.1\|5404554_5404743_-	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	3.1e-14	73.5
WP_011269116.1\|5404739_5405330_-	hypothetical protein	B5TK65	Pseudomonas_phage	2.4e-52	52.6
5404929:5404944	attR	NA	NA	NA	NA
WP_011269117.1\|5405375_5405714_-	lipoprotein	A0A059VJW1	Pseudomonas_phage	1.2e-19	59.2
WP_003411734.1\|5405694_5406084_-	hypothetical protein	A0A059VK40	Pseudomonas_phage	2.3e-43	76.4
WP_024661077.1\|5406206_5407379_-	cellulase family glycosylhydrolase	NA	NA	NA	NA
WP_080396072.1\|5407390_5407576_-	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	3.8e-12	86.8
WP_024661078.1\|5407848_5408292_-	hypothetical protein	A0A2H4J8A5	uncultured_Caudovirales_phage	1.0e-23	45.1
WP_011269121.1\|5408403_5409093_+	helix-turn-helix domain-containing protein	Q8HAG7	Salmonella_phage	1.8e-51	47.9
WP_003402012.1\|5409247_5409496_+	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_004415824.1\|5409593_5409860_+	transcriptional regulator	A0A2H4J8B4	uncultured_Caudovirales_phage	2.1e-16	51.2
WP_024661079.1\|5409965_5411888_+	autotransporter domain-containing esterase	NA	NA	NA	NA
WP_152533613.1\|5412081_5413457_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.3e-77	53.2

DBSCAN-SWA_5

5535931 : 5568606

Bacteriophage(33.33%)

holin,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024660127.1\|5535931_5536390_-\|transposase	transposase	NA	NA	NA	NA
WP_003402189.1\|5536516_5537620_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_011269185.1\|5538403_5539351_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002555599.1\|5539418_5540264_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_011269186.1\|5540260_5541439_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.9e-25	36.4
WP_024640219.1\|5541697_5542951_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	7.0e-102	54.0
WP_024640218.1\|5542968_5544219_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_003316160.1\|5544234_5544531_+	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_024652484.1\|5544527_5547548_+	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_024660891.1\|5547598_5548231_+	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_003402204.1\|5548436_5549294_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_024640215.1\|5549402_5550602_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	2.2e-12	27.7
WP_024659767.1\|5552089_5553106_-	RHS repeat-associated core domain-containing protein	A0A1W5K0N1	Bacteriophage	8.4e-29	41.8
WP_024659766.1\|5553226_5559052_-	hypothetical protein	NA	NA	NA	NA
WP_003402209.1\|5559276_5559840_+	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_050586791.1\|5559819_5560887_-	RHS repeat-associated core domain-containing protein	A0A1W5K0N1	Bacteriophage	2.2e-27	36.9
WP_024659764.1\|5560937_5561831_-	acyltransferase	NA	NA	NA	NA
WP_024641132.1\|5562025_5562529_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_024638082.1\|5563024_5563654_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003402221.1\|5563723_5563906_-	hypothetical protein	NA	NA	NA	NA
WP_011269198.1\|5563902_5565036_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_024659939.1\|5565157_5566141_-	FecR family protein	NA	NA	NA	NA
WP_011269200.1\|5566137_5566656_-	RNA polymerase sigma factor	NA	NA	NA	NA
WP_003402225.1\|5566899_5568606_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.9e-49	29.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047267

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection