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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_022270 Vibrio campbellii ATCC BAA-1116 chromosome II, complete sequence 2 crisprs RT,csa3,cas6f,cas7f,cas5f,cas3 0 5 17 0
NC_022269 Vibrio campbellii ATCC BAA-1116 chromosome I, complete sequence 2 crisprs RT,DEDDh,WYL,DinG,csx1,cas3,PrimPol,csa3 0 0 15 1
NC_022271 Vibrio campbellii ATCC BAA-1116 plasmid unnamed, complete sequence 2 crisprs csa3,RT 1 2 1 0

Results visualization

1. NC_022270
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022270_1 474031-474113 Orphan NA
1 spacers
RT

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022270_2 677185-677393 Unclear NA
3 spacers
cas6f,cas7f,cas5f

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_022270_1 1.1|474057|31|NC_022270|CRISPRCasFinder 474057-474087 31 NZ_CP053542 Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence 48673-48703 1 0.968
NC_022270_1 1.1|474057|31|NC_022270|CRISPRCasFinder 474057-474087 31 NZ_CP053542 Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence 51981-52011 1 0.968
NC_022270_2 2.2|677273|32|NC_022270|CRISPRCasFinder 677273-677304 32 NZ_CP053818 Vibrio cholerae strain SA7G plasmid pSA7G1, complete sequence 78825-78856 1 0.969
NC_022270_2 2.5|677274|31|NC_022270|CRT,PILER-CR 677274-677304 31 NZ_CP053818 Vibrio cholerae strain SA7G plasmid pSA7G1, complete sequence 78825-78855 1 0.968
NC_022270_1 1.1|474057|31|NC_022270|CRISPRCasFinder 474057-474087 31 NZ_CP053542 Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence 49324-49354 2 0.935
NC_022270_1 1.1|474057|31|NC_022270|CRISPRCasFinder 474057-474087 31 NZ_CP053542 Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence 49974-50004 2 0.935
NC_022270_1 1.1|474057|31|NC_022270|CRISPRCasFinder 474057-474087 31 NZ_CP053542 Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence 50679-50709 2 0.935
NC_022270_1 1.1|474057|31|NC_022270|CRISPRCasFinder 474057-474087 31 NZ_CP053542 Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence 51330-51360 2 0.935
NC_022270_2 2.6|677334|31|NC_022270|CRT,PILER-CR 677334-677364 31 NZ_CP032520 Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence 108990-109020 5 0.839
NC_022270_2 2.3|677333|32|NC_022270|CRISPRCasFinder 677333-677364 32 NZ_CP032520 Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence 108989-109020 6 0.812
NC_022270_1 1.1|474057|31|NC_022270|CRISPRCasFinder 474057-474087 31 NZ_CP045419 Pseudoalteromonas sp. THAF3 plasmid pTHAF3_a, complete sequence 148753-148783 7 0.774

1. spacer 1.1|474057|31|NC_022270|CRISPRCasFinder matches to NZ_CP053542 (Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence) position: , mismatch: 1, identity: 0.968

ggacgcgggtcaaactcgctggatggcggtg	CRISPR spacer
ggacgcgggtcaaactcgctggatggcggcg	Protospacer
*****************************.*

2. spacer 1.1|474057|31|NC_022270|CRISPRCasFinder matches to NZ_CP053542 (Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence) position: , mismatch: 1, identity: 0.968

ggacgcgggtcaaactcgctggatggcggtg	CRISPR spacer
ggacgcgggtcaaactcgctggatggcggcg	Protospacer
*****************************.*

3. spacer 2.2|677273|32|NC_022270|CRISPRCasFinder matches to NZ_CP053818 (Vibrio cholerae strain SA7G plasmid pSA7G1, complete sequence) position: , mismatch: 1, identity: 0.969

gataacgaaaggatgcaagccacgacctattt	CRISPR spacer
gataacgaaaggatgcaagccacgacccattt	Protospacer
***************************.****

4. spacer 2.5|677274|31|NC_022270|CRT,PILER-CR matches to NZ_CP053818 (Vibrio cholerae strain SA7G plasmid pSA7G1, complete sequence) position: , mismatch: 1, identity: 0.968

ataacgaaaggatgcaagccacgacctattt	CRISPR spacer
ataacgaaaggatgcaagccacgacccattt	Protospacer
**************************.****

5. spacer 1.1|474057|31|NC_022270|CRISPRCasFinder matches to NZ_CP053542 (Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence) position: , mismatch: 2, identity: 0.935

ggacgcgggtcaaactcgctggatggcggtg	CRISPR spacer
ggacgcgggtcgaactcgctggatggcggcg	Protospacer
***********.*****************.*

6. spacer 1.1|474057|31|NC_022270|CRISPRCasFinder matches to NZ_CP053542 (Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence) position: , mismatch: 2, identity: 0.935

ggacgcgggtcaaactcgctggatggcggtg	CRISPR spacer
ggacgcgggtcgaactcgctggatggcggcg	Protospacer
***********.*****************.*

7. spacer 1.1|474057|31|NC_022270|CRISPRCasFinder matches to NZ_CP053542 (Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence) position: , mismatch: 2, identity: 0.935

ggacgcgggtcaaactcgctggatggcggtg	CRISPR spacer
ggacgcgggtcgaactcgctggatggcggcg	Protospacer
***********.*****************.*

8. spacer 1.1|474057|31|NC_022270|CRISPRCasFinder matches to NZ_CP053542 (Vibrio europaeus strain NPI-1 plasmid pVEu, complete sequence) position: , mismatch: 2, identity: 0.935

ggacgcgggtcaaactcgctggatggcggtg	CRISPR spacer
ggacgcgggtcgaactcgctggatggcggcg	Protospacer
***********.*****************.*

9. spacer 2.6|677334|31|NC_022270|CRT,PILER-CR matches to NZ_CP032520 (Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.839

cataccgcgatgagcgcaagcggtcgcaacc	CRISPR spacer
catagcgcgatgcgcgcaagcggtcgcgata	Protospacer
**** ******* **************.*. 

10. spacer 2.3|677333|32|NC_022270|CRISPRCasFinder matches to NZ_CP032520 (Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

tcataccgcgatgagcgcaagcggtcgcaacc	CRISPR spacer
gcatagcgcgatgcgcgcaagcggtcgcgata	Protospacer
 **** ******* **************.*. 

11. spacer 1.1|474057|31|NC_022270|CRISPRCasFinder matches to NZ_CP045419 (Pseudoalteromonas sp. THAF3 plasmid pTHAF3_a, complete sequence) position: , mismatch: 7, identity: 0.774

ggacgcgggtcaaactcgctggatggcggtg	CRISPR spacer
gtagacgcgtcaaactcgctagatggcgata	Protospacer
* * .** ************.*******.*.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 7914 : 74207 54 Enterobacteria_phage(21.43%) transposase,tRNA NA
DBSCAN-SWA_2 80506 : 212758 117 Leptospira_phage(11.11%) transposase,tRNA,protease,integrase attL 80428:80446|attR 175760:175774
DBSCAN-SWA_3 437008 : 506654 57 Leptospira_phage(21.43%) transposase NA
DBSCAN-SWA_4 514080 : 573684 44 Enterobacteria_phage(28.57%) transposase NA
DBSCAN-SWA_5 607492 : 673699 54 Enterobacteria_phage(12.5%) transposase,integrase attL 633923:633937|attR 678547:678561
DBSCAN-SWA_6 688950 : 746763 47 Enterobacteria_phage(30.0%) transposase,holin NA
DBSCAN-SWA_7 820091 : 848092 24 Enterobacteria_phage(22.22%) transposase NA
DBSCAN-SWA_8 851816 : 917041 54 Vibrio_phage(21.43%) transposase NA
DBSCAN-SWA_9 971291 : 997640 16 Leptospira_phage(25.0%) transposase NA
DBSCAN-SWA_10 1023501 : 1070718 34 Vibrio_phage(25.0%) transposase,protease,plate NA
DBSCAN-SWA_11 1104576 : 1111359 11 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_12 1119843 : 1153180 27 Bacillus_phage(55.56%) transposase,protease NA
DBSCAN-SWA_13 1169123 : 1218702 39 uncultured_Caudovirales_phage(18.18%) transposase NA
DBSCAN-SWA_14 1230616 : 1308896 52 Enterobacteria_phage(27.27%) transposase NA
DBSCAN-SWA_15 1703968 : 1799172 83 Vibrio_phage(46.15%) plate,terminase,tail,portal,transposase,capsid,head NA
DBSCAN-SWA_16 1802257 : 1806987 9 Vibrio_phage(85.71%) NA NA
DBSCAN-SWA_17 2007870 : 2082079 58 Vibrio_phage(23.53%) transposase,integrase attL 1995330:1995345|attR 2052416:2052431
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NC_022269
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022269_1 1322510-1322662 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022269_2 2477448-2477580 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 68914 : 120389 39 Leptospira_phage(18.18%) transposase NA
DBSCAN-SWA_2 217790 : 277602 49 Enterobacteria_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_3 417891 : 427315 12 Vibrio_phage(91.67%) NA NA
DBSCAN-SWA_4 545624 : 776562 200 Vibrio_phage(28.77%) tail,plate,tRNA,head,terminase,lysis,integrase,portal,transposase,capsid attL 720260:720282|attR 779483:779505
DBSCAN-SWA_5 782358 : 833990 48 Leptospira_phage(40.0%) transposase,tRNA NA
DBSCAN-SWA_6 898131 : 978081 58 Leptospira_phage(13.33%) protease,transposase,tRNA NA
DBSCAN-SWA_7 1001389 : 1117186 97 Leptospira_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_8 1221043 : 1243539 17 Leptospira_phage(50.0%) transposase NA
DBSCAN-SWA_9 1495799 : 1625264 102 Staphylococcus_phage(22.58%) integrase,transposase,tRNA attL 1571431:1571445|attR 1598344:1598358
DBSCAN-SWA_10 1885808 : 1894240 8 Leptospira_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_11 2145584 : 2208456 45 Enterobacteria_phage(18.18%) bacteriocin,transposase,tRNA,integrase attL 2158477:2158493|attR 2215465:2215481
DBSCAN-SWA_12 2452384 : 2534871 52 Enterobacteria_phage(20.0%) protease,transposase,tRNA NA
DBSCAN-SWA_13 2903396 : 2922113 16 uncultured_Mediterranean_phage(18.18%) transposase,tRNA NA
DBSCAN-SWA_14 3423776 : 3472428 41 Vibrio_phage(25.0%) transposase NA
DBSCAN-SWA_15 3520251 : 3651610 105 Enterobacteria_phage(17.39%) protease,transposase,tRNA NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NC_022269.1|WP_021017851.1|1224072_1224264_+|hypothetical-protein 1224072_1224264_+ 63 aa aa NA NA NA 1221043-1243539 yes
3. NC_022271
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022271_1 28092-28166 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022271_2 52213-52312 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_022271_1 1.1|28116|27|NC_022271|CRISPRCasFinder 28116-28142 27 NC_022269.1 131672-131698 0 1.0
NC_022271_1 1.1|28116|27|NC_022271|CRISPRCasFinder 28116-28142 27 NC_022269.1 1223408-1223434 0 1.0

1. spacer 1.1|28116|27|NC_022271|CRISPRCasFinder matches to position: 131672-131698, mismatch: 0, identity: 1.0

aaaccagcacctaaaaaagaatctagc	CRISPR spacer
aaaccagcacctaaaaaagaatctagc	Protospacer
***************************

2. spacer 1.1|28116|27|NC_022271|CRISPRCasFinder matches to position: 1223408-1223434, mismatch: 0, identity: 1.0

aaaccagcacctaaaaaagaatctagc	CRISPR spacer
aaaccagcacctaaaaaagaatctagc	Protospacer
***************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_022271_1 1.1|28116|27|NC_022271|CRISPRCasFinder 28116-28142 27 NC_022271 Vibrio campbellii ATCC BAA-1116 plasmid unnamed, complete sequence 28116-28142 0 1.0
NC_022271_1 1.1|28116|27|NC_022271|CRISPRCasFinder 28116-28142 27 NC_009777 Vibrio campbellii ATCC BAA-1116 plasmid pVIBHAR, complete sequence 28672-28698 0 1.0
NC_022271_2 2.1|52236|54|NC_022271|CRISPRCasFinder 52236-52289 54 NC_022271 Vibrio campbellii ATCC BAA-1116 plasmid unnamed, complete sequence 52236-52289 0 1.0
NC_022271_2 2.1|52236|54|NC_022271|CRISPRCasFinder 52236-52289 54 NC_009777 Vibrio campbellii ATCC BAA-1116 plasmid pVIBHAR, complete sequence 52792-52845 0 1.0
NC_022271_1 1.1|28116|27|NC_022271|CRISPRCasFinder 28116-28142 27 KU737346 Bacillus phage Vinny, complete genome 40975-41001 5 0.815
NC_022271_1 1.1|28116|27|NC_022271|CRISPRCasFinder 28116-28142 27 NC_024207 Bacillus phage Evoli, complete genome 40370-40396 5 0.815
NC_022271_1 1.1|28116|27|NC_022271|CRISPRCasFinder 28116-28142 27 NC_018856 Bacillus phage Bastille, complete genome 14622-14648 5 0.815
NC_022271_1 1.1|28116|27|NC_022271|CRISPRCasFinder 28116-28142 27 MK448855 Streptococcus phage Javan150, complete genome 7605-7631 6 0.778

1. spacer 1.1|28116|27|NC_022271|CRISPRCasFinder matches to NC_022271 (Vibrio campbellii ATCC BAA-1116 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

aaaccagcacctaaaaaagaatctagc	CRISPR spacer
aaaccagcacctaaaaaagaatctagc	Protospacer
***************************

2. spacer 1.1|28116|27|NC_022271|CRISPRCasFinder matches to NC_009777 (Vibrio campbellii ATCC BAA-1116 plasmid pVIBHAR, complete sequence) position: , mismatch: 0, identity: 1.0

aaaccagcacctaaaaaagaatctagc	CRISPR spacer
aaaccagcacctaaaaaagaatctagc	Protospacer
***************************

3. spacer 2.1|52236|54|NC_022271|CRISPRCasFinder matches to NC_022271 (Vibrio campbellii ATCC BAA-1116 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gggggagtgggaagggcaattcaacaacatcagtggattagagctgtatatcgt	CRISPR spacer
gggggagtgggaagggcaattcaacaacatcagtggattagagctgtatatcgt	Protospacer
******************************************************

4. spacer 2.1|52236|54|NC_022271|CRISPRCasFinder matches to NC_009777 (Vibrio campbellii ATCC BAA-1116 plasmid pVIBHAR, complete sequence) position: , mismatch: 0, identity: 1.0

gggggagtgggaagggcaattcaacaacatcagtggattagagctgtatatcgt	CRISPR spacer
gggggagtgggaagggcaattcaacaacatcagtggattagagctgtatatcgt	Protospacer
******************************************************

5. spacer 1.1|28116|27|NC_022271|CRISPRCasFinder matches to KU737346 (Bacillus phage Vinny, complete genome) position: , mismatch: 5, identity: 0.815

aaaccagcacctaaaaaag-aatctagc	CRISPR spacer
aaaccagcacctaaaaaagcggagtag-	Protospacer
******************* ..  *** 

6. spacer 1.1|28116|27|NC_022271|CRISPRCasFinder matches to NC_024207 (Bacillus phage Evoli, complete genome) position: , mismatch: 5, identity: 0.815

aaaccagcacctaaaaaag-aatctagc	CRISPR spacer
aaaccagcacctaaaaaagcggagtag-	Protospacer
******************* ..  *** 

7. spacer 1.1|28116|27|NC_022271|CRISPRCasFinder matches to NC_018856 (Bacillus phage Bastille, complete genome) position: , mismatch: 5, identity: 0.815

aaaccagcacctaaaaaag-aatctagc	CRISPR spacer
aaaccagcacctaaaaaagcggagtag-	Protospacer
******************* ..  *** 

8. spacer 1.1|28116|27|NC_022271|CRISPRCasFinder matches to MK448855 (Streptococcus phage Javan150, complete genome) position: , mismatch: 6, identity: 0.778

aaaccagcacctaaaaaagaatctagc	CRISPR spacer
aagccagcacctaaaaaagaagcagct	Protospacer
**.****************** * . .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 12306 : 56447 49 Leptospira_phage(25.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage