CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_022348	Campylobacter coli CVM N29710 plasmid pN29710-2, complete sequence	0 crisprs	NA	0	0
NC_022347	Campylobacter coli CVM N29710, complete sequence	0 crisprs	DEDDh	0	1
NC_022355	Campylobacter coli CVM N29710 plasmid pN29710-1, complete sequence	1 crisprs	NA	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

634273 : 648100

Synechococcus_phage(22.22%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002806601.1\|634273_634834_+	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	4.1e-17	36.7
WP_021033687.1\|634833_635595_+	glycosyltransferase family 25 protein	M1PHE5	Moumouvirus	4.7e-16	33.0
WP_021033688.1\|635587_636532_-	lipopolysaccharide heptosyltransferase II	NA	NA	NA	NA
WP_002844798.1\|636591_637413_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_002844799.1\|637455_638823_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.1e-55	31.5
WP_002844800.1\|638823_639963_+	GDP-mannose 4,6-dehydratase	M4QRT5	Synechococcus_phage	8.3e-118	58.7
WP_002844801.1\|639955_640894_+	NAD-dependent epimerase/dehydratase family protein	M4R1H4	Synechococcus_phage	2.1e-58	37.5
WP_002844803.1\|640886_642056_+	DegT/DnrJ/EryC1/StrS family aminotransferase	E5ES46	Bathycoccus_sp._RCC1105_virus	1.4e-48	35.0
WP_002844805.1\|642433_643453_+	hypothetical protein	A0A0N9QXU8	Chrysochromulina_ericina_virus	5.1e-18	29.7
WP_002844807.1\|643466_644438_+	alpha-1,2-fucosyltransferase	NA	NA	NA	NA
WP_021033689.1\|644427_645249_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_002844810.1\|645252_646326_+	CDP-glucose 4,6-dehydratase	A0A0P0YMS6	Yellowstone_lake_phycodnavirus	3.2e-10	22.8
WP_002844812.1\|646342_648100_+	thiamine pyrophosphate-binding protein	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	5.3e-79	33.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_022355

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CRISPR-Cas detection and classification

Crispr_ID: NC_022355_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_022355_1

18050-18145

Orphan

Consensus_repeat	Method
AGAAATCATTACATTTAAGTCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_022355_1

>merge|NC_022355|1|18050-18145|CRISPRCasFinder
AGAAATCATTACATTTAAGTCAATTGTTTTTTTAAAGTCCCTATTTTCCATATGTTATTTTCGTAAAAATGTCAAAAATCATTACATTTAAGTCAA

>NC_022355|1|1|18050-18145|CRISPRCasFinder
AGAAATCATTACATTTAAGTCAA	TTGTTTTTTTAAAGTCCCTATTTTCCATATGTTATTTTCGTAAAAATGTC
AAAAATCATTACATTTAAGTCAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_022355.1\|WP_002779628.1\|25823_26375_+\|hypothetical-protein	unknown	unknown	unknown
NC_022355.1\|WP_021034322.1\|17233_17527_+\|EexN-family-lipoprotein	unknown	unknown	unknown
NC_022355.1\|WP_002801489.1\|12086_13475_-\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NC_022355.1\|WP_021034332.1\|22490_25259_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	unknown	unknown	gnl\|CDD\|273346
NC_022355.1\|WP_002790340.1\|18583_18787_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|224638
NC_022355.1\|WP_041161598.1\|15146_15377_+\|hypothetical-protein	unknown	unknown	unknown
NC_022355.1\|WP_002803413.1\|20712_21327_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|184041
NC_022355.1\|WP_031263757.1\|10739_11351_+\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350289
NC_022355.1\|WP_002779625.1\|22214_22478_+\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NC_022355.1\|WP_002779627.1\|25269_25827_+\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378235
NC_022355.1\|WP_021034330.1\|13474_14026_-\|hypothetical-protein	unknown	unknown	unknown
NC_022355.1\|WP_002779624.1\|21721_22045_-\|hypothetical-protein	unknown	unknown	unknown
NC_022355.1\|WP_041161599.1\|15489_15807_+\|hypothetical-protein	unknown	unknown	unknown
NC_022355.1\|WP_002790342.1\|18790_20584_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|238545
NC_022355.1\|WP_002823310.1\|15889_17116_+\|toprim-domain-containing-protein	unknown	unknown	gnl\|CDD\|226990
NC_022355.1\|WP_002801138.1\|21323_21731_-\|vapd	unknown	unknown	gnl\|CDD\|225846
NC_022355.1\|WP_002801148.1\|18372_18591_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NC_022355.1\|WP_021034331.1\|14219_14519_+\|hypothetical-protein	unknown	unknown	unknown
NC_022355.1\|WP_002823273.1\|17605_17881_-\|hypothetical-protein	unknown	unknown	unknown
NC_022355.1\|WP_079275893.1\|4690_10486_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|226993

Protein	Function_ID	Function_description	E-value
NC_022355.1\|WP_002790342.1\|18790_20584_+\|AAA-family-ATPase	gnl\|CDD\|238545	cd01125, repA, Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.	6.71147e-14
NC_022355.1\|WP_002801489.1\|12086_13475_-\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	4.91898e-05
NC_022355.1\|WP_002790340.1\|18583_18787_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|224638	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only].	6.85308e-14
NC_022355.1\|WP_002803413.1\|20712_21327_-\|recombinase-family-protein	gnl\|CDD\|184041	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase.	1.1543e-37
NC_022355.1\|WP_031263757.1\|10739_11351_+\|NYN-domain-containing-protein	gnl\|CDD\|350289	cd18722, PIN_NicB-like, LabA-like PIN domain of Pseudomonas putida S16 NicB and related proteins. Curiously NicB from Pseudomonas putida S16 is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine. This subfamily also includes the uncharacterized CPP15 (plasmid) protein from Campylobacter jejuni. This subfamily belongs to LabA-like PIN domain family which includes Synechococcus elongatus PCC 7942 LabA, human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	9.67711e-26
NC_022355.1\|WP_002779625.1\|22214_22478_+\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	1.41173e-06
NC_022355.1\|WP_002779627.1\|25269_25827_+\|Rha-family-transcriptional-regulator	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	3.85249e-36
NC_022355.1\|WP_079275893.1\|4690_10486_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|226993	COG4646, COG4646, DNA methylase [Transcription / DNA replication, recombination, and repair].	1.99633e-71
NC_022355.1\|WP_002801138.1\|21323_21731_-\|vapd	gnl\|CDD\|225846	COG3309, VapD, Uncharacterized virulence-associated protein D [Function unknown].	2.07007e-09
NC_022355.1\|WP_002801148.1\|18372_18591_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.74784e-11
NC_022355.1\|WP_021034332.1\|22490_25259_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0
NC_022355.1\|WP_002823310.1\|15889_17116_+\|toprim-domain-containing-protein	gnl\|CDD\|226990	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown].	1.3304e-26

>NC_022355.1|WP_002823273.1|17605_17881_-|hypothetical-protein
MCKIIKYLDYARLNTLEKLYFDLTIMLIVTFLSFLFLVFEFFIYENIAVFFQDCFLMSVIFIIGMIGLFHTCKGLRKYKEILKSNKREEFI
>NC_022355.1|WP_021034322.1|17233_17527_+|EexN-family-lipoprotein
MKNTIKLALLGAVITGVFSACSSEPKTVQYYEDPKNATELEAKIKECDKNANSAKTDTECANAYEARYSKSFDYKPQVSTKELMQKAREQNKNMELK
>NC_022355.1|WP_002823310.1|15889_17116_+|toprim-domain-containing-protein
MPQKRIYLYVPFKDKEKAKSLGAMWDDKEKKWFAPKTLDKNIFSQWLYPHQKKEFSFDENEVLTAFKSALENQGLIIEGLPIMDGKIHRVKTTNDKGRELSGAYSGFLDDYPAGFVQNFKTGIKENWKMPIEKNQSNNIKNSQKLHEQIKKDQELREKEILTLQEKTALKLEDEYNNAKWANSNHAYLKKKGFDENFYLKQDKMGSLLIPLKDENGKLWSVQRIFPNGDKIIGVIKTQEEKDQGVEYLAKKQGCFHIIGAKTLHNLKEFYICEGFATAATIYKALNKPVIMGVDAGNLSKIVETLKNKFENTPITLIADNDKKRELKGLSNVGVETAKEIQQRFSDIKVIIPKISDQEAGQGVSDFNDIFLNKGLDEVKKQLNFIDFHNKLKAFKSMEKTQPEKEITR
>NC_022355.1|WP_041161599.1|15489_15807_+|hypothetical-protein
MNLKNINFRNYNQYNRNFFLKNGKKRNFGNIYKVDIVLSLLQNLRNRSYHWENILKTTEKNSKHYPRLTTKIENVYIGINPQKIELFLDDLIKTFDERILKYCQD
>NC_022355.1|WP_041161598.1|15146_15377_+|hypothetical-protein
MNNTINFNELFSQIRLYSYDNNIVKHYDNLKLVGKITPKIATLEIILRNKLDNKLSEQDSNWIKNSNDENIKKSQR
>NC_022355.1|WP_021034331.1|14219_14519_+|hypothetical-protein
MLKESKLIEELKREYDEKLKKLRQKEKENKERIFKKFSSALFKDFEINEDFKNEFNLLVEKFDCKNTKNILDKINNLYDFNHRNDKIDTAKKTIKQNLS
>NC_022355.1|WP_021034330.1|13474_14026_-|hypothetical-protein
MNKNNNCVIKVSKDDKIILEYIKSETNASYSKIISILLKKFNSCDTDEKNKINDEICKNKFYTSDENKIIKLKLTENEVNILKEISKNTGFSSITKQAKFLLLNSIKNEKLFTNIEIDEFIKTRTEINAIGKNIYQLLKILRSGNSVKINENNLNKTMDNIRDKIDILSDQLGAIIEKNNERI
>NC_022355.1|WP_002801489.1|12086_13475_-|relaxase/mobilization-nuclease-domain-containing-protein
MSRSIRIFDDEIIAKKVFTKIENASKLPLNYINKNRDKYTKDIKTGKLISKNMFRKNTEVVVKITSGSKNSQALSKHLDYISRDGNVELITNDFDRYAGEDEILEVKRIFKNEGSPIPLYKEGAKEKRHTINMVFSMKEHSTTPKEKLQQAVITTLKRMYPNNFFVVAFHNDTDNPHCHVCLKVADKNGKRINPKKADLANLRAEFAKALNELGVEAKATNKKQREVEINQEFSVKLNANNEINQAPKIKMHYYQVMDFGEANYQFSTDKNAKKSYYVSYKTKKGITTIWGQDLERVVRENKVLRGEYARFKIVGQEEYEIKRKAKINNKWQEVVKTLKKPIWEVSVIGREKDLKQINKAKTTKKYKIIQDKGVNNERDYTKQYRQRVLQELGNKSTIRRETAQERNSMRILSKQPMVHNTKRTQMLLHINALNQLQQGERGRSDNILRWTSARNNEIKRDG
>NC_022355.1|WP_031263757.1|10739_11351_+|NYN-domain-containing-protein
MEAKELAKRLKDYVWETLRRNEDYLHRVYIYDCEPLDKNVPMPPIEKTDKSKNLSKTTTYKFRSELLNHLRKQPYFAVRLGEIDENSFQWKFRDYDKFRKILRKEIDICELTSEDFVLDIKQKGVDMKIGLDIATLANKHHAEKIILITADSDFIPAVKHARKEGIIVQLDPMRIPETQIKKGLLEHIDILSSVFINKNKNGN
>NC_022355.1|WP_079275893.1|4690_10486_+|DEAD/DEAH-box-helicase-family-protein
MSKKTKRQIEDEKDYGGRSLFDLIELEFSQGEENEQQNRELSEHREVTDNIERTSISSNTPSVDRQENSAIQFDNTREMGRVLSEHNQESRNVRSHDTSITTSSNGISNFGEQRSEQEERSGANRYGDTSGRADKSQSIHSNRTPNLFSFISRNDDERQGTGTRRDNQQSVLETATRNDGYERRSLKSGQKLDFVSDDEIYLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKEFKELISTLDYVEYEKAKTSTLDAFYTPKIIIDTIYQGLNQLGFNNDGHTKEIFEPSAGIGSFLSYAKNYSDKYHFTCVELDTISANILKHLHPNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLNDTTLNKTSVHNYFIGNAIKNLKEDGIAAFVVSSYFLDSKNSTIRNYIAEQATFLGAVRLPNNAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYDDRFDEAEKRGMHPDVFNDFRINEYFKNNPQNILGKMNIKSSQYGYSLECLDDGRDLKIALENFTKTLPKNIYKYQETKIKLSYYRIDRESPEYEKYSKTLSKLKDGNYFEYNNEIYMKIRSDDELVFSKPVLNEHDTRRIKKLIALRDQFNTLIEYEKNESSDLLVENQRKYLNKLYDEFVAKEGYLNRDANKKAFREDVEANKILALEKNYSSGISKSVALKEGIDPIAPSATKADIFFKRTINAQKEIKISTPKEALIASINEYGRIDLKFLETNLNQPLEETLKSLEQDKLIFKDHKNPANYVLAEKYLSGNVKAKHKEVKKLVEDGFNEFVNNLESLEQVLPKDLKAVDISISLGTTWIPIKYYKQFIEETLQITPKDYDLFLMEKTGEWSLKGFGHSLSPYIRSQYATEKIGCFDLFEHGLLRKPIRIYDKKLDPSGKEIRELNPKETAIANSKLENLKNEFIEWIYKDYDRRTDLENIYNERFNTNIEPQYNGEHLELPNFNANIKLKKHQKNAIYRAIQENSIIFDHQVGAGKTLVAICSVMEQKRMGLLNKPLIVVPNHLARQWNDEFYHAYTNANILVATNDDLKKDNREKFFSKITTNNFDAIIMTHSQFKLIPAPYEVIKKQYEEDINILEQTLEKKQNDDNVMRYSVKDLEKRIENFKVKLSDLQTTHKKSKAIDFSELGIDALIIDEAHEFKNLLITTSMGDISGLGNLKGSQKAYDLYSKTQYIHEQNKKLYFLTGTPISNSITELYTLQRYIQPNILKEKGIQAFDSWASTFGEVTNAWELDSSGINYKIVARFNKFKNVPELSTMYKSVADIVTNNDIMKYQKDFVPKLYNDKPINIVAPRSEEIAEFIGIQDENGRWNEGSIVWRMEHQQDDITRNNLLACTTDARKAGLDFRLINPHCDDYANSKINKLIENVFNEYNAWNDDKGTQLIFCDLSTPKQHSQKVALNGNIATPNLNKEEFVNINETIEQTEEENSKSLDELLAEQAKFDVYTDILKKLVAKGIPQNEIRFIHDAKTDLQKGQLFADMNSGKARILIGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQRSGRVIRQGNELFMRDPQNFRVKEFRYATERTYDARMWQVIESKARSIEQFRKAGADVRTLEDVTSGAADAAEMKAEATGNPLILLQVQLNSDLRQEEMLYSGYKRQIHNNEESLITNLSKIELLKKDIAKMEILNSIIKENNSEHFQGKYYINDDEKDFIVFKNDTSDLNKSRQAELERNFEKIVKTIADDYQKEYKVLEFKGLLISGERTDLNTLNFYVSTTDGKTIIEPENLIYKRDEKTFFKLESYVNFGGFVKRLNNFYNDLEKFTQLNKNKIENLEKEIVELKSITGDNTPKYKRKDYLEALREDNRIIMDEIEKMSKQKNYKSDFVPKSAKILEDLNKHNKILKDRELLI
>NC_022355.1|WP_002801148.1|18372_18591_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLLNIIIEKDQDGYFARILELEGCVSQGNTYEEALVNIKEAGELYLESLANEEKRIIENKTTSIIPMVLANA
>NC_022355.1|WP_002790340.1|18583_18787_+|type-II-toxin-antitoxin-system-HicA-family-toxin
MPELPRMTAKEAEKLLLQNDFSIDRQKGSHRIYKKGLYRMVIPHHSGEILHPKIIKQLFEIIEVAKD
>NC_022355.1|WP_002790342.1|18790_20584_+|AAA-family-ATPase
MPKRNTIETITLGLFSDEDVSIICEDTIKLERGSVAVLSGNSEVGKSFLALKVCANAINDGLKPFFWSVEDKNKAILERIKNIESFYSFNTAELEFSNELPKINKEPINCLKEELNELADCDLIVLDTFSAFFSTLGFKDQNNQNDVQNFFNILTDIAKSNNQAILLLHHLDKKGESLMGSSVIINAPRLVYKLSFEKGEDKNSTTYRLLEVLKDNNNINAGEFQKTIKVLQNSSIDEPSIVNLRANSIDSNTLEIINKKDISAVSVNELAKGYVTMNENRGVFYLSSRKLTDTNFYKVFKENDNKIDFKMTGANGSSYAISLKNSLLTQTHRNILDALFLYIKKNVDTSVIKKYQENFWDMEVRLEPYKFLKQYLNKNSNNYSWLKQKFTEISRFAYDLAFTQNVEDKDKKTITQRDKGILMFDSVERITKENGTIVSVFVLTVRREYIKKLETESTLSYDDDLSKILINLNSLVAQDLIRFLTSFPDKKILSYSEFCEIKAYKFYKENSIISRQKKEIIKLKDKLIEFGINIYGKGVEFADYDDEFFHNKYKNENDLFFIYQSNNKVKRYIKRDDPMNQLNTKDNRFLLQKSLFD
>NC_022355.1|WP_002803413.1|20712_21327_-|recombinase-family-protein
MNIAYIRVSTNKQELDSQKLEIMEYCHKNNIILDEILEVKISSTKSQEKRKIKDLKQRLQSGDLLIATELSRLGRSMLEIINLVLEFNANNINFLFLRQRELSNFNNPSSKLILSIYAYLAENERDLISQRTKAGLENAKASGKKLGRPKGSLNSIYDKDIDKIQTLLDKDLSIRSIWKLFYKDSGKTYDGLLWFIKKRKLKQK
>NC_022355.1|WP_002801138.1|21323_21731_-|vapd
MGINRKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQYSGYTSKEPIDERRVARIVTKLAKKFTWFGECVKEFDITEIGEQYSLKDTIQNLCIKEINKQAGYNKDFHGKFKEFTQKTPKNQKLKDLER
>NC_022355.1|WP_002779624.1|21721_22045_-|hypothetical-protein
MAYPLLGTRIVLDEEKILKEGKYNLEDMYKMIDEYAKESGMIKINKETYHCKGDKYDLGCMALFIYKYLIDSEWFTKNAKEWIWISEKEGNSDLISASKAEGEGIWE
>NC_022355.1|WP_002779625.1|22214_22478_+|TrbC/VirB2-family-protein
MKIKLLSLILLSPIFVFAAGGIDKVNTFMENLSTALYALGAVLLTIAFMWGGSKIMFQGQTLREVAPIFIGGVIFGSASAIAGYIIT
>NC_022355.1|WP_021034332.1|22490_25259_+|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase
MEKNPLFKGLTRPPMIFGVPMTPFVIAMGSIILVAFYSQNIFLVGFSIPVFFIMKAMTKKDDFIFRLMFLKMRFFSNPASKNYYKAKTYSTNSYRQMPPNSNFPKISVFGLNAEPNFEKLIPFSSLINDSVVITKDYLLMTTWEIGGISFEAEDDDELDIKNDLLNMLFKSFANEPVSFYFHNCRYSIEDKLTSKFNNAFLEEIDRKYYESFKQGTLKKNSLYLTLIFNPLKVKIEKTTFMKSSFENKRKTISVFLAKFSEFADRLEANIKDFNPKRLKTYSKDDKTYSKQLEFYNYLLGGKFNPIRVLPNPIDQYLNGNLQNIQFGHDTIQFNQNDSTKRFARCIEIKDYTNETFAGILDILMYLDVEYTITQSFSPIPRVDAKSAISKQKKQLIATEDDGFSQVEQIDEALDQLTNGEISFGKYHFSILVYGNTIKECKDNTNEVVTKMNELGFGVTLATIALPATFFSQLPSNFAIRPRINLISSINFSSLIALHNFSMGKRDKNCWGDAVSILKTPNKQPYYFNFHQSSGVNKNDFGELFLANTLILGQSSGGKTVFMNFIVDQMMKYASKDTFPDDIPEENRKFTAIYLDKDKGALGNILCAGGRYISIENGKPTGFNPFMVENTQENIRQLQSLMKLLVTRNNEILTTREEEMLNNAVNSLMKGFEKEERKYPISLLLENLTENVDDDNSLKSRLALFKKGKQFGWVFDNEYDNLDFPDDINLFGIDGTEFLDDKDVSEILSYYILWRVMSLADGRRLCIDIDEAWKWLENEIVQEEVKNKFKTIRKQNGFLRLATQSVEDFLKLKNATTLIEQSATMVFLPNPKAKEEEYVKGVGLSYDEYMIIKGFNVAKRQFLIKRQDEKVICTLDLSSLGNENLKILSTGTAHIDTIEKIFSQENKSLDEKVLELKEFYKNS
>NC_022355.1|WP_002779627.1|25269_25827_+|Rha-family-transcriptional-regulator
MSNKVIINKQEVQFGTQDNQIFCTSLDVAKVFGKEHKNILRDIENILNDLREIGTSNCLLNFELSFKVHKIQGFKGRERKYPYYNLTRDGFSLLAMGFTGKEALQWKILFIDAFNEMQKLLQKEIKSPNKYLTDLMELIYPNLPQNDYKVSVTITDNPYSKEAKNVFSLNYLVDNRTPKDPKKLQ
>NC_022355.1|WP_002779628.1|25823_26375_+|hypothetical-protein
MSDKELEIFELCERLVDLLGDKEAVADLQTLLERHPEMFQNKEQVANLIKKVIHDPEIIINNPTPKSEKDYIAGKKLNEKKMGEVGIRKDENISKIFHANEKRIKNLELMAKKDVVVDGRNAHTSYTQAQSLDGRLVQKNISSATNKIIPQQNKSTNDFKAKLEEFSTKKTNAVKSINKEFKR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_KJ646012	Campylobacter jejuni strain 11601MD plasmid p11601MD, complete sequence	39947-39996	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP045793	Campylobacter coli strain CFSAN032805 plasmid p1CFSAN032805, complete sequence	2492-2541	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NC_017282	Campylobacter jejuni subsp. jejuni S3 plasmid pTet, complete sequence	33083-33132	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP013035	Campylobacter coli strain HC2-48 plasmid pccdm1, complete sequence	5473-5522	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP007752	Campylobacter jejuni subsp. jejuni D42a plasmid pTet-D42a, complete sequence	6604-6653	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP014745	Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence	72201-72250	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP023546	Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_1, complete sequence	3064-3113	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP017026	Campylobacter coli plasmid pCC14983A-1, complete sequence	77864-77913	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP011017	Campylobacter coli strain FB1 plasmid pFB1TET, complete sequence	25209-25258	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP044168	Campylobacter jejuni strain AR-0415 plasmid pAR-0415, complete sequence	11714-11763	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP040609	Campylobacter sp. CFSAN093226 plasmid unnamed, complete sequence	4066-4115	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP017861	Campylobacter jejuni strain TS1218 plasmid pCJDM218, complete sequence	11000-11049	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP043764	Campylobacter jejuni strain BfR-CA-14430 plasmid pBfR-CA-14430, complete sequence	30424-30473	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP007750	Campylobacter jejuni subsp. jejuni M129 plasmid pTet-M129, complete sequence	5167-5216	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP048762	Campylobacter jejuni strain ZS004 plasmid pCJFEX, complete sequence	17612-17661	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_MK541988	Campylobacter coli strain CVM N61740F plasmid pN61740F, complete sequence	9361-9410	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_MK541989	Campylobacter coli strain CVM N61925F plasmid pN61925F, complete sequence	33146-33195	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NC_022354	Campylobacter jejuni subsp. jejuni 00-2544 plasmid unnamed, complete sequence	34776-34825	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_KX686749	Campylobacter coli strain Tx40 plasmid unnamed, complete sequence	16533-16582	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP007182	Campylobacter coli RM4661 plasmid pRM4661_48kbp, complete sequence	17073-17122	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NC_006134	Campylobacter coli plasmid pCC31, complete sequence	20905-20954	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP007180	Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence	20269-20318	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP010073	Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj1, complete sequence	8503-8552	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP023544	Campylobacter jejuni strain CFSAN032806 plasmid pCFSAN032806, complete sequence	18106-18155	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	CP002030	Campylobacter jejuni subsp. jejuni ICDCCJ07001 plasmid pTet, complete sequence	18942-18991	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP017418	Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-1, complete sequence	13094-13143	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP017419	Campylobacter jejuni strain MTVDSCj16 plasmid pMTVDSCj16-1, complete sequence	13120-13169	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP017866	Campylobacter coli strain YF2105 plasmid pCCDM105L, complete sequence	40967-41016	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP017879	Campylobacter coli strain BG2108 plasmid pCCDM108L, complete sequence	4231-4280	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP017416	Campylobacter jejuni strain MTVDSCj07 plasmid pMTVDSCj07-1, complete sequence	13533-13582	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP017872	Campylobacter coli strain BP3183 plasmid pCCDM183, complete sequence	6212-6261	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP020775	Campylobacter jejuni strain YH002 plasmid pCJP002, complete sequence	21028-21077	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NC_022355	Campylobacter coli CVM N29710 plasmid pN29710-1, complete sequence	18073-18122	0	1.0
NC_022355_1	1.1\|18073\|50\|NC_022355\|CRISPRCasFinder	18073-18122	50	NZ_CP017869	Campylobacter coli strain MG1116 plasmid pCCDM116L, complete sequence	18541-18590	1	0.98

1. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_KJ646012 (Campylobacter jejuni strain 11601MD plasmid p11601MD, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

2. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP045793 (Campylobacter coli strain CFSAN032805 plasmid p1CFSAN032805, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

3. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NC_017282 (Campylobacter jejuni subsp. jejuni S3 plasmid pTet, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

4. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP013035 (Campylobacter coli strain HC2-48 plasmid pccdm1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

5. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP007752 (Campylobacter jejuni subsp. jejuni D42a plasmid pTet-D42a, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

6. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP014745 (Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

7. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP023546 (Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

8. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP017026 (Campylobacter coli plasmid pCC14983A-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

9. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP011017 (Campylobacter coli strain FB1 plasmid pFB1TET, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

10. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP044168 (Campylobacter jejuni strain AR-0415 plasmid pAR-0415, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

11. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP040609 (Campylobacter sp. CFSAN093226 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

12. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP017861 (Campylobacter jejuni strain TS1218 plasmid pCJDM218, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

13. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP043764 (Campylobacter jejuni strain BfR-CA-14430 plasmid pBfR-CA-14430, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

14. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP007750 (Campylobacter jejuni subsp. jejuni M129 plasmid pTet-M129, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

15. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP048762 (Campylobacter jejuni strain ZS004 plasmid pCJFEX, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

16. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_MK541988 (Campylobacter coli strain CVM N61740F plasmid pN61740F, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

17. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_MK541989 (Campylobacter coli strain CVM N61925F plasmid pN61925F, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

18. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NC_022354 (Campylobacter jejuni subsp. jejuni 00-2544 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

19. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_KX686749 (Campylobacter coli strain Tx40 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

20. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP007182 (Campylobacter coli RM4661 plasmid pRM4661_48kbp, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

21. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NC_006134 (Campylobacter coli plasmid pCC31, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

22. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP007180 (Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

23. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP010073 (Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

24. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP023544 (Campylobacter jejuni strain CFSAN032806 plasmid pCFSAN032806, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

25. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to CP002030 (Campylobacter jejuni subsp. jejuni ICDCCJ07001 plasmid pTet, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

26. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP017418 (Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

27. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP017419 (Campylobacter jejuni strain MTVDSCj16 plasmid pMTVDSCj16-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

28. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP017866 (Campylobacter coli strain YF2105 plasmid pCCDM105L, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

29. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP017879 (Campylobacter coli strain BG2108 plasmid pCCDM108L, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

30. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP017416 (Campylobacter jejuni strain MTVDSCj07 plasmid pMTVDSCj07-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

31. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP017872 (Campylobacter coli strain BP3183 plasmid pCCDM183, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

32. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP020775 (Campylobacter jejuni strain YH002 plasmid pCJP002, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

33. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NC_022355 (Campylobacter coli CVM N29710 plasmid pN29710-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

34. spacer 1.1|18073|50|NC_022355|CRISPRCasFinder matches to NZ_CP017869 (Campylobacter coli strain MG1116 plasmid pCCDM116L, complete sequence) position: , mismatch: 1, identity: 0.98

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttcttttcgtaaaaatgtc	Protospacer
********************************* ****************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_022347

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_022355

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection