CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_022354	Campylobacter jejuni subsp. jejuni 00-2544 plasmid unnamed, complete sequence	1 crisprs	c2c9_V-U4	0	2	6	0
NC_022353	Campylobacter jejuni subsp. jejuni 00-2544, complete sequence	2 crisprs	DEDDh,WYL,cas14j,cas2,cas1,cas9,csa3	0	2	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_022354_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_022354_1

34644-34841

Orphan

Consensus_repeat	Method
TTTTCAAATAAAATTGACTTTAATGTAAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_022354_1

>merge|NC_022354|1|34644-34841|CRISPRCasFinder
TTTTCAAATAAAATTGACTTTAATGTAATATGCACTTACATTAAAGTCAACAAAAATTGCTAAATGCTCCTCTTATTTTCAAATAAAATTGACTTAAATGTAATGATTTTTGACTTAAATGTAATGATTTTTGACATTTTTACGAAAATAACATATGGAAAATAGGGACTTTAAAAAAACAATTGACTTAAATGTAAT

>NC_022354|1|1|34644-34841|CRISPRCasFinder
TTTTCAAATAAAATTGACTTTAATGTAAT	ATGCACTTACATTAAAGTCAACAAAAATTGCTAAATGCTCCTCTTA
TTTTCAAATAAAATTGACTTAAATGTAAT	GATTTTTGACTTAAATGTAATGATTTTTGACATTTTTACGAAAATAACATATGGAAAATAGGGAC
TTTAAAAAAACAATTGACTTAAATGTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_022354.1\|WP_002779778.1\|37667_37949_-\|hypothetical-protein	unknown	unknown	unknown
NC_022354.1\|WP_031263757.1\|40818_41430_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350289
NC_022354.1\|WP_021034321.1\|27637_30406_-\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	unknown	unknown	gnl\|CDD\|273346
NC_022354.1\|WP_002779777.1\|38142_38694_+\|hypothetical-protein	unknown	unknown	unknown
NC_022354.1\|WP_002790553.1\|38693_40082_+\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NC_022354.1\|WP_002803413.1\|31569_32184_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|184041
NC_022354.1\|WP_002823310.1\|35781_37008_-\|toprim-domain-containing-protein	unknown	unknown	gnl\|CDD\|226990
NC_022354.1\|WP_002801138.1\|31165_31573_+\|vapd	unknown	unknown	gnl\|CDD\|225846
NC_022354.1\|WP_002790342.1\|32313_34107_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|238545
NC_022354.1\|WP_002790340.1\|34110_34314_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|224638
NC_022354.1\|WP_002779779.1\|37028_37640_-\|hypothetical-protein	unknown	unknown	unknown
NC_022354.1\|WP_002790552.1\|40104_40809_+\|GNAT-family-N-acetyltransferase	unknown	unknown	unknown
NC_022354.1\|WP_021034322.1\|35370_35664_-\|EexN-family-lipoprotein	unknown	unknown	unknown
NC_022354.1\|WP_002823273.1\|35016_35292_+\|hypothetical-protein	unknown	unknown	unknown
NC_022354.1\|WP_002801148.1\|34306_34525_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NC_022354.1\|WP_002779628.1\|26521_27073_-\|hypothetical-protein	unknown	unknown	unknown
NC_022354.1\|WP_002779627.1\|27069_27627_-\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378235
NC_022354.1\|WP_002779625.1\|30418_30682_-\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NC_022354.1\|WP_002779624.1\|30851_31175_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_022354.1\|WP_031263757.1\|40818_41430_-\|NYN-domain-containing-protein	gnl\|CDD\|350289	cd18722, PIN_NicB-like, LabA-like PIN domain of Pseudomonas putida S16 NicB and related proteins. Curiously NicB from Pseudomonas putida S16 is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine. This subfamily also includes the uncharacterized CPP15 (plasmid) protein from Campylobacter jejuni. This subfamily belongs to LabA-like PIN domain family which includes Synechococcus elongatus PCC 7942 LabA, human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	9.67711e-26
NC_022354.1\|WP_002790553.1\|38693_40082_+\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	5.02045e-05
NC_022354.1\|WP_021034321.1\|27637_30406_-\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0
NC_022354.1\|WP_002801148.1\|34306_34525_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.74784e-11
NC_022354.1\|WP_002803413.1\|31569_32184_+\|recombinase-family-protein	gnl\|CDD\|184041	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase.	1.1543e-37
NC_022354.1\|WP_002823310.1\|35781_37008_-\|toprim-domain-containing-protein	gnl\|CDD\|226990	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown].	1.3304e-26
NC_022354.1\|WP_002779627.1\|27069_27627_-\|Rha-family-transcriptional-regulator	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	3.85249e-36
NC_022354.1\|WP_002801138.1\|31165_31573_+\|vapd	gnl\|CDD\|225846	COG3309, VapD, Uncharacterized virulence-associated protein D [Function unknown].	2.07007e-09
NC_022354.1\|WP_002779625.1\|30418_30682_-\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	1.41173e-06
NC_022354.1\|WP_002790342.1\|32313_34107_-\|AAA-family-ATPase	gnl\|CDD\|238545	cd01125, repA, Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.	6.71147e-14
NC_022354.1\|WP_002790340.1\|34110_34314_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|224638	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only].	6.85308e-14

>NC_022354.1|WP_002801148.1|34306_34525_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLLNIIIEKDQDGYFARILELEGCVSQGNTYEEALVNIKEAGELYLESLANEEKRIIENKTTSIIPMVLANA
>NC_022354.1|WP_002790340.1|34110_34314_-|type-II-toxin-antitoxin-system-HicA-family-toxin
MPELPRMTAKEAEKLLLQNDFSIDRQKGSHRIYKKGLYRMVIPHHSGEILHPKIIKQLFEIIEVAKD
>NC_022354.1|WP_002790342.1|32313_34107_-|AAA-family-ATPase
MPKRNTIETITLGLFSDEDVSIICEDTIKLERGSVAVLSGNSEVGKSFLALKVCANAINDGLKPFFWSVEDKNKAILERIKNIESFYSFNTAELEFSNELPKINKEPINCLKEELNELADCDLIVLDTFSAFFSTLGFKDQNNQNDVQNFFNILTDIAKSNNQAILLLHHLDKKGESLMGSSVIINAPRLVYKLSFEKGEDKNSTTYRLLEVLKDNNNINAGEFQKTIKVLQNSSIDEPSIVNLRANSIDSNTLEIINKKDISAVSVNELAKGYVTMNENRGVFYLSSRKLTDTNFYKVFKENDNKIDFKMTGANGSSYAISLKNSLLTQTHRNILDALFLYIKKNVDTSVIKKYQENFWDMEVRLEPYKFLKQYLNKNSNNYSWLKQKFTEISRFAYDLAFTQNVEDKDKKTITQRDKGILMFDSVERITKENGTIVSVFVLTVRREYIKKLETESTLSYDDDLSKILINLNSLVAQDLIRFLTSFPDKKILSYSEFCEIKAYKFYKENSIISRQKKEIIKLKDKLIEFGINIYGKGVEFADYDDEFFHNKYKNENDLFFIYQSNNKVKRYIKRDDPMNQLNTKDNRFLLQKSLFD
>NC_022354.1|WP_002803413.1|31569_32184_+|recombinase-family-protein
MNIAYIRVSTNKQELDSQKLEIMEYCHKNNIILDEILEVKISSTKSQEKRKIKDLKQRLQSGDLLIATELSRLGRSMLEIINLVLEFNANNINFLFLRQRELSNFNNPSSKLILSIYAYLAENERDLISQRTKAGLENAKASGKKLGRPKGSLNSIYDKDIDKIQTLLDKDLSIRSIWKLFYKDSGKTYDGLLWFIKKRKLKQK
>NC_022354.1|WP_002801138.1|31165_31573_+|vapd
MGINRKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQYSGYTSKEPIDERRVARIVTKLAKKFTWFGECVKEFDITEIGEQYSLKDTIQNLCIKEINKQAGYNKDFHGKFKEFTQKTPKNQKLKDLER
>NC_022354.1|WP_002779624.1|30851_31175_+|hypothetical-protein
MAYPLLGTRIVLDEEKILKEGKYNLEDMYKMIDEYAKESGMIKINKETYHCKGDKYDLGCMALFIYKYLIDSEWFTKNAKEWIWISEKEGNSDLISASKAEGEGIWE
>NC_022354.1|WP_002779625.1|30418_30682_-|TrbC/VirB2-family-protein
MKIKLLSLILLSPIFVFAAGGIDKVNTFMENLSTALYALGAVLLTIAFMWGGSKIMFQGQTLREVAPIFIGGVIFGSASAIAGYIIT
>NC_022354.1|WP_021034321.1|27637_30406_-|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase
MEKNPLFKGLTRPPMIFGVPMTPFVIAMGSIILVAFYSQNIFLVGFSIPVFFIMKAMTKKDDFIFRLMFLKMRFFSNPASKNYYKAKTYSTNSYRQMPPNSNFPKISVFGLNAEPNFEKLIPFSSLINDSVVITKDYLLMTTWEIGGISFEAEDDDELDIKNDLLNMLFKSFANEPVSFYFHNCRYSIEDKLTSKFNNAFLEEIDRKYYESFKQGTLKKNSLYLTLIFNPLKVKIEKTTFMKSSFENKRKTISVFLAKFSEFADRLEANIKDFNPKRLKTYSKDDKTYSKQLEFYNYLLGGKFNPIRVLPSPIDQYLNGNLQNIQFGHDTIQFNQNDSTKRFARCIEIKDYTNETFAGILDILMYLDVEYTITQSFSPIPRVDAKSAISKQKKQLIATEDDGFSQVEQIDEALDQLTNGEISFGKYHFSILVYGNTIKECKDNTNEVVTKMNELGFGVTLATIALPATFFSQLPSNFAIRPRINLISSINFSSLIALHNFSMGKRDKNCWGDAVSILKTPNKQPYYFNFHQSSGVNKNDFGELFLANTLILGQSSGGKTVFMNFIVDQMMKYASKDTFPDDIPEENRKFTAIYLDKDKGALGNILCAGGRYISIENGKPTGFNPFMVENTQENIRQLQSLMKLLVTRNNEILTTREEEMLNNAVNSLMKGFEKEERKYPISLLLENLTENVDDDNSLKSRLALFKKGKQFGWVFDNEYDNLDFPDDINLFGIDGTEFLDDKDVSEILSYYILWRVMSLADGRRLCIDIDEAWKWLENEIVQEEVKNKFKTIRKQNGFLRLATQSVEDFLKLKNATTLIEQSATMVFLPNPKAKEEEYVKGVGLSYDEYMIIKGFNVAKRQFLIKRQDEKVICTLDLSSLGNENLKILSTGTAHIDTIEKIFSQENKSLDEKVLELKEFYKNS
>NC_022354.1|WP_002779627.1|27069_27627_-|Rha-family-transcriptional-regulator
MSNKVIINKQEVQFGTQDNQIFCTSLDVAKVFGKEHKNILRDIENILNDLREIGTSNCLLNFELSFKVHKIQGFKGRERKYPYYNLTRDGFSLLAMGFTGKEALQWKILFIDAFNEMQKLLQKEIKSPNKYLTDLMELIYPNLPQNDYKVSVTITDNPYSKEAKNVFSLNYLVDNRTPKDPKKLQ
>NC_022354.1|WP_002779628.1|26521_27073_-|hypothetical-protein
MSDKELEIFELCERLVDLLGDKEAVADLQTLLERHPEMFQNKEQVANLIKKVIHDPEIIINNPTPKSEKDYIAGKKLNEKKMGEVGIRKDENISKIFHANEKRIKNLELMAKKDVVVDGRNAHTSYTQAQSLDGRLVQKNISSATNKIIPQQNKSTNDFKAKLEEFSTKKTNAVKSINKEFKR
>NC_022354.1|WP_002823273.1|35016_35292_+|hypothetical-protein
MCKIIKYLDYARLNTLEKLYFDLTIMLIVTFLSFLFLVFEFFIYENIAVFFQDCFLMSVIFIIGMIGLFHTCKGLRKYKEILKSNKREEFI
>NC_022354.1|WP_021034322.1|35370_35664_-|EexN-family-lipoprotein
MKNTIKLALLGAVITGVFSACSSEPKTVQYYEDPKNATELEAKIKECDKNANSAKTDTECANAYEARYSKSFDYKPQVSTKELMQKAREQNKNMELK
>NC_022354.1|WP_002823310.1|35781_37008_-|toprim-domain-containing-protein
MPQKRIYLYVPFKDKEKAKSLGAMWDDKEKKWFAPKTLDKNIFSQWLYPHQKKEFSFDENEVLTAFKSALENQGLIIEGLPIMDGKIHRVKTTNDKGRELSGAYSGFLDDYPAGFVQNFKTGIKENWKMPIEKNQSNNIKNSQKLHEQIKKDQELREKEILTLQEKTALKLEDEYNNAKWANSNHAYLKKKGFDENFYLKQDKMGSLLIPLKDENGKLWSVQRIFPNGDKIIGVIKTQEEKDQGVEYLAKKQGCFHIIGAKTLHNLKEFYICEGFATAATIYKALNKPVIMGVDAGNLSKIVETLKNKFENTPITLIADNDKKRELKGLSNVGVETAKEIQQRFSDIKVIIPKISDQEAGQGVSDFNDIFLNKGLDEVKKQLNFIDFHNKLKAFKSMEKTQPEKEITR
>NC_022354.1|WP_002779779.1|37028_37640_-|hypothetical-protein
MEKDYKIKVTDVSELNEQYKEAIQEGTYEGEDVNKFFNTIKTFDIAESLLKKDFSNQYIKFDIITDKEKIPLNIRLGDKNFEKGIEHLINIGSSKISKENINPEIKKDLNNQLGTYKPKVYDEMLDGTFKALKNLSEVANKDIGVMISEFANSYSETREKFEKKQINKKSFFKEKMNEFFKKKLNKILPNKEISNEKTYSRSR
>NC_022354.1|WP_002779778.1|37667_37949_-|hypothetical-protein
MLKESKLIEELKREYDEKLKKLRQKEKENKERIYKKLSSALFKDFEINEDFKNEFNLLVEKFDCKNTKNILDKINNLYDFNHRNDKIDTAKKQ
>NC_022354.1|WP_002779777.1|38142_38694_+|hypothetical-protein
MNKNNNCVIKVSKDDKIILEYIKSETNASYSKIISILLKKFNSCDTDEKNKINDEISKNKFYTSDENKIIKLKLTENEVNILKEISKNTGFSSITKQAKFLLLNSIKNEKLFTNIEIDEFIKTRTEINAIGKNIYQLLKILRSGNSVKINENNLNKTMDNIRDKIDILSDQLGAIIEKNNERI
>NC_022354.1|WP_002790553.1|38693_40082_+|relaxase/mobilization-nuclease-domain-containing-protein
MSRSIRIFDDEIIAKKVFTKIENASKLPLNYINKNRDKYTKDIKTGKLISKNMFRKNTEVVVKITSGSKNSQALSKHLDYISRDGNVELITNDFDRYAGEDEILEVKRIFKNEGSPIPLYKEGAKEKRHTINMVFSMKEHSTTPKEKLQQAVITTLKRMYPNNFFVVAFHNDTDNPHCHVCLKVADKNGKRINPKKADLANLRAEFAKALNELGVEAKATNKKQREVEINQEFSVKLNANNEINQAPKIKMHYYQVMDFGEANYQFSTDKNAKKSYYVSYKTKKGITTIWGQDLERVVRENKVLRGEYARFKIVGQEEYEIKRKAKINNKWQEVVKTLKKPIWEVSVIGREKDLKQINKAKTTKKYKIIQDKGVNNERDYTKQYRQRILQELGNKSTIRRETAQERNSMRILSKQPVVHNTKRTQMLLHINALNQLQQGERGRSDNILRWTSARNNEIKRDG
>NC_022354.1|WP_002790552.1|40104_40809_+|GNAT-family-N-acetyltransferase
MRQAFYTSKFYISKKSEKEVCFKLNFEIEISGGGEKIYKVEIRAFVDYQYLKNGNNITPNIHKNQNDWWLSYECDRWSFHSSIAIRDEYQSLGIGTFLINKMLEIALKYVPTARLSGTLSAVDEEILENHIRRDKLYKNLGFIFNEDNTGFSIEQIGDLKIRKDFDYIQEVHILNMCYQLSNLQHEKEGCIRQLESHKDDMRKLNKENAALRTRNKFILCFCIALIFLIVCLIK
>NC_022354.1|WP_031263757.1|40818_41430_-|NYN-domain-containing-protein
MEAKELAKRLKDYVWETLRRNEDYLHRVYIYDCEPLDKNVPMPPIEKTDKSKNLSKTTTYKFRSELLNHLRKQPYFAVRLGEIDENSFQWKFRDYDKFRKILRKEIDICELTSEDFVLDIKQKGVDMKIGLDIATLANKHHAEKIILITADSDFIPAVKHARKEGIIVQLDPMRIPETQIKKGLLEHIDILSSVFINKNKNGN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP045793	Campylobacter coli strain CFSAN032805 plasmid p1CFSAN032805, complete sequence	2389-2434	0	1.0
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NC_017282	Campylobacter jejuni subsp. jejuni S3 plasmid pTet, complete sequence	32980-33025	0	1.0
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP023546	Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_1, complete sequence	2961-3006	0	1.0
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP017026	Campylobacter coli plasmid pCC14983A-1, complete sequence	77761-77806	0	1.0
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP011017	Campylobacter coli strain FB1 plasmid pFB1TET, complete sequence	25106-25151	0	1.0
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP017861	Campylobacter jejuni strain TS1218 plasmid pCJDM218, complete sequence	10897-10942	0	1.0
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP043764	Campylobacter jejuni strain BfR-CA-14430 plasmid pBfR-CA-14430, complete sequence	30321-30366	0	1.0
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP048762	Campylobacter jejuni strain ZS004 plasmid pCJFEX, complete sequence	17509-17554	0	1.0
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_MK541988	Campylobacter coli strain CVM N61740F plasmid pN61740F, complete sequence	9258-9303	0	1.0
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_MK541989	Campylobacter coli strain CVM N61925F plasmid pN61925F, complete sequence	33043-33088	0	1.0
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NC_022354	Campylobacter jejuni subsp. jejuni 00-2544 plasmid unnamed, complete sequence	34673-34718	0	1.0
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_KX686749	Campylobacter coli strain Tx40 plasmid unnamed, complete sequence	16640-16685	0	1.0
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP007182	Campylobacter coli RM4661 plasmid pRM4661_48kbp, complete sequence	17180-17225	0	1.0
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NC_006134	Campylobacter coli plasmid pCC31, complete sequence	21012-21057	0	1.0
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP007180	Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence	20376-20421	0	1.0
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP023544	Campylobacter jejuni strain CFSAN032806 plasmid pCFSAN032806, complete sequence	18213-18258	0	1.0
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP017418	Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-1, complete sequence	13201-13246	0	1.0
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP017419	Campylobacter jejuni strain MTVDSCj16 plasmid pMTVDSCj16-1, complete sequence	13227-13272	0	1.0
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP017866	Campylobacter coli strain YF2105 plasmid pCCDM105L, complete sequence	41074-41119	0	1.0
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP017879	Campylobacter coli strain BG2108 plasmid pCCDM108L, complete sequence	4338-4383	0	1.0
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP017416	Campylobacter jejuni strain MTVDSCj07 plasmid pMTVDSCj07-1, complete sequence	13640-13685	0	1.0
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP017872	Campylobacter coli strain BP3183 plasmid pCCDM183, complete sequence	6319-6364	0	1.0
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NC_022355	Campylobacter coli CVM N29710 plasmid pN29710-1, complete sequence	18180-18225	0	1.0
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_KJ646012	Campylobacter jejuni strain 11601MD plasmid p11601MD, complete sequence	39844-39889	1	0.978
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP013035	Campylobacter coli strain HC2-48 plasmid pccdm1, complete sequence	5370-5415	1	0.978
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP007752	Campylobacter jejuni subsp. jejuni D42a plasmid pTet-D42a, complete sequence	6501-6546	1	0.978
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP014745	Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence	72098-72143	1	0.978
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP044168	Campylobacter jejuni strain AR-0415 plasmid pAR-0415, complete sequence	11611-11656	1	0.978
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP040609	Campylobacter sp. CFSAN093226 plasmid unnamed, complete sequence	3963-4008	1	0.978
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP007750	Campylobacter jejuni subsp. jejuni M129 plasmid pTet-M129, complete sequence	5064-5109	1	0.978
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP010073	Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj1, complete sequence	8610-8655	1	0.978
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	CP002030	Campylobacter jejuni subsp. jejuni ICDCCJ07001 plasmid pTet, complete sequence	19049-19094	1	0.978
NC_022354_1	1.1\|34673\|46\|NC_022354\|CRISPRCasFinder	34673-34718	46	NZ_CP020775	Campylobacter jejuni strain YH002 plasmid pCJP002, complete sequence	21135-21180	1	0.978
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_KX686749	Campylobacter coli strain Tx40 plasmid unnamed, complete sequence	16546-16610	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP007182	Campylobacter coli RM4661 plasmid pRM4661_48kbp, complete sequence	17086-17150	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_KJ646012	Campylobacter jejuni strain 11601MD plasmid p11601MD, complete sequence	39919-39983	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP045793	Campylobacter coli strain CFSAN032805 plasmid p1CFSAN032805, complete sequence	2464-2528	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NC_017282	Campylobacter jejuni subsp. jejuni S3 plasmid pTet, complete sequence	33055-33119	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP013035	Campylobacter coli strain HC2-48 plasmid pccdm1, complete sequence	5445-5509	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP007752	Campylobacter jejuni subsp. jejuni D42a plasmid pTet-D42a, complete sequence	6576-6640	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NC_006134	Campylobacter coli plasmid pCC31, complete sequence	20918-20982	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP014745	Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence	72173-72237	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP023546	Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_1, complete sequence	3036-3100	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP007180	Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence	20282-20346	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP017026	Campylobacter coli plasmid pCC14983A-1, complete sequence	77836-77900	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP011017	Campylobacter coli strain FB1 plasmid pFB1TET, complete sequence	25181-25245	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP044168	Campylobacter jejuni strain AR-0415 plasmid pAR-0415, complete sequence	11686-11750	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP023544	Campylobacter jejuni strain CFSAN032806 plasmid pCFSAN032806, complete sequence	18119-18183	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP017861	Campylobacter jejuni strain TS1218 plasmid pCJDM218, complete sequence	10972-11036	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP043764	Campylobacter jejuni strain BfR-CA-14430 plasmid pBfR-CA-14430, complete sequence	30396-30460	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP007750	Campylobacter jejuni subsp. jejuni M129 plasmid pTet-M129, complete sequence	5139-5203	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP048762	Campylobacter jejuni strain ZS004 plasmid pCJFEX, complete sequence	17584-17648	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP017418	Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-1, complete sequence	13107-13171	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP017419	Campylobacter jejuni strain MTVDSCj16 plasmid pMTVDSCj16-1, complete sequence	13133-13197	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP017866	Campylobacter coli strain YF2105 plasmid pCCDM105L, complete sequence	40980-41044	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP017879	Campylobacter coli strain BG2108 plasmid pCCDM108L, complete sequence	4244-4308	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP017416	Campylobacter jejuni strain MTVDSCj07 plasmid pMTVDSCj07-1, complete sequence	13546-13610	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP017872	Campylobacter coli strain BP3183 plasmid pCCDM183, complete sequence	6225-6289	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP020775	Campylobacter jejuni strain YH002 plasmid pCJP002, complete sequence	21041-21105	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_MK541988	Campylobacter coli strain CVM N61740F plasmid pN61740F, complete sequence	9333-9397	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_MK541989	Campylobacter coli strain CVM N61925F plasmid pN61925F, complete sequence	33118-33182	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NC_022354	Campylobacter jejuni subsp. jejuni 00-2544 plasmid unnamed, complete sequence	34748-34812	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NC_022355	Campylobacter coli CVM N29710 plasmid pN29710-1, complete sequence	18086-18150	5	0.923
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP017869	Campylobacter coli strain MG1116 plasmid pCCDM116L, complete sequence	18554-18618	6	0.908
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP010073	Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj1, complete sequence	8516-8580	7	0.892
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	NZ_CP040609	Campylobacter sp. CFSAN093226 plasmid unnamed, complete sequence	4038-4102	7	0.892
NC_022354_1	1.2\|34748\|65\|NC_022354\|CRISPRCasFinder	34748-34812	65	CP002030	Campylobacter jejuni subsp. jejuni ICDCCJ07001 plasmid pTet, complete sequence	18955-19019	7	0.892

1. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP045793 (Campylobacter coli strain CFSAN032805 plasmid p1CFSAN032805, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

2. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NC_017282 (Campylobacter jejuni subsp. jejuni S3 plasmid pTet, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

3. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP023546 (Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_1, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

4. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP017026 (Campylobacter coli plasmid pCC14983A-1, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

5. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP011017 (Campylobacter coli strain FB1 plasmid pFB1TET, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

6. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP017861 (Campylobacter jejuni strain TS1218 plasmid pCJDM218, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

7. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP043764 (Campylobacter jejuni strain BfR-CA-14430 plasmid pBfR-CA-14430, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

8. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP048762 (Campylobacter jejuni strain ZS004 plasmid pCJFEX, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

9. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_MK541988 (Campylobacter coli strain CVM N61740F plasmid pN61740F, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

10. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_MK541989 (Campylobacter coli strain CVM N61925F plasmid pN61925F, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

11. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NC_022354 (Campylobacter jejuni subsp. jejuni 00-2544 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

12. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_KX686749 (Campylobacter coli strain Tx40 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

13. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP007182 (Campylobacter coli RM4661 plasmid pRM4661_48kbp, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

14. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NC_006134 (Campylobacter coli plasmid pCC31, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

15. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP007180 (Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

16. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP023544 (Campylobacter jejuni strain CFSAN032806 plasmid pCFSAN032806, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

17. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP017418 (Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-1, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

18. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP017419 (Campylobacter jejuni strain MTVDSCj16 plasmid pMTVDSCj16-1, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

19. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP017866 (Campylobacter coli strain YF2105 plasmid pCCDM105L, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

20. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP017879 (Campylobacter coli strain BG2108 plasmid pCCDM108L, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

21. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP017416 (Campylobacter jejuni strain MTVDSCj07 plasmid pMTVDSCj07-1, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

22. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP017872 (Campylobacter coli strain BP3183 plasmid pCCDM183, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

23. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NC_022355 (Campylobacter coli CVM N29710 plasmid pN29710-1, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

24. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_KJ646012 (Campylobacter jejuni strain 11601MD plasmid p11601MD, complete sequence) position: , mismatch: 1, identity: 0.978

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgtacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
***.******************************************

25. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP013035 (Campylobacter coli strain HC2-48 plasmid pccdm1, complete sequence) position: , mismatch: 1, identity: 0.978

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgtacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
***.******************************************

26. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP007752 (Campylobacter jejuni subsp. jejuni D42a plasmid pTet-D42a, complete sequence) position: , mismatch: 1, identity: 0.978

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgtacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
***.******************************************

27. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP014745 (Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence) position: , mismatch: 1, identity: 0.978

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgtacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
***.******************************************

28. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP044168 (Campylobacter jejuni strain AR-0415 plasmid pAR-0415, complete sequence) position: , mismatch: 1, identity: 0.978

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgtacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
***.******************************************

29. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP040609 (Campylobacter sp. CFSAN093226 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.978

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atacacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**.*******************************************

30. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP007750 (Campylobacter jejuni subsp. jejuni M129 plasmid pTet-M129, complete sequence) position: , mismatch: 1, identity: 0.978

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgtacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
***.******************************************

31. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP010073 (Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj1, complete sequence) position: , mismatch: 1, identity: 0.978

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atacacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**.*******************************************

32. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to CP002030 (Campylobacter jejuni subsp. jejuni ICDCCJ07001 plasmid pTet, complete sequence) position: , mismatch: 1, identity: 0.978

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atacacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**.*******************************************

33. spacer 1.1|34673|46|NC_022354|CRISPRCasFinder matches to NZ_CP020775 (Campylobacter jejuni strain YH002 plasmid pCJP002, complete sequence) position: , mismatch: 1, identity: 0.978

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgtacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
***.******************************************

34. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_KX686749 (Campylobacter coli strain Tx40 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

35. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP007182 (Campylobacter coli RM4661 plasmid pRM4661_48kbp, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

36. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_KJ646012 (Campylobacter jejuni strain 11601MD plasmid p11601MD, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

37. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP045793 (Campylobacter coli strain CFSAN032805 plasmid p1CFSAN032805, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

38. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NC_017282 (Campylobacter jejuni subsp. jejuni S3 plasmid pTet, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

39. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP013035 (Campylobacter coli strain HC2-48 plasmid pccdm1, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

40. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP007752 (Campylobacter jejuni subsp. jejuni D42a plasmid pTet-D42a, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

41. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NC_006134 (Campylobacter coli plasmid pCC31, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

42. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP014745 (Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

43. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP023546 (Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_1, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

44. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP007180 (Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

45. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP017026 (Campylobacter coli plasmid pCC14983A-1, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

46. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP011017 (Campylobacter coli strain FB1 plasmid pFB1TET, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

47. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP044168 (Campylobacter jejuni strain AR-0415 plasmid pAR-0415, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

48. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP023544 (Campylobacter jejuni strain CFSAN032806 plasmid pCFSAN032806, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

49. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP017861 (Campylobacter jejuni strain TS1218 plasmid pCJDM218, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

50. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP043764 (Campylobacter jejuni strain BfR-CA-14430 plasmid pBfR-CA-14430, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

51. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP007750 (Campylobacter jejuni subsp. jejuni M129 plasmid pTet-M129, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

52. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP048762 (Campylobacter jejuni strain ZS004 plasmid pCJFEX, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

53. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP017418 (Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-1, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

54. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP017419 (Campylobacter jejuni strain MTVDSCj16 plasmid pMTVDSCj16-1, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

55. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP017866 (Campylobacter coli strain YF2105 plasmid pCCDM105L, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

56. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP017879 (Campylobacter coli strain BG2108 plasmid pCCDM108L, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

57. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP017416 (Campylobacter jejuni strain MTVDSCj07 plasmid pMTVDSCj07-1, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

58. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP017872 (Campylobacter coli strain BP3183 plasmid pCCDM183, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

59. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP020775 (Campylobacter jejuni strain YH002 plasmid pCJP002, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

60. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_MK541988 (Campylobacter coli strain CVM N61740F plasmid pN61740F, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

61. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_MK541989 (Campylobacter coli strain CVM N61925F plasmid pN61925F, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

62. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NC_022354 (Campylobacter jejuni subsp. jejuni 00-2544 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

63. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NC_022355 (Campylobacter coli CVM N29710 plasmid pN29710-1, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

64. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP017869 (Campylobacter coli strain MG1116 plasmid pCCDM116L, complete sequence) position: , mismatch: 6, identity: 0.908

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaagaacatatggaaaata	Protospacer
******************************************** ***************

65. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP010073 (Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj1, complete sequence) position: , mismatch: 7, identity: 0.892

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
aatttttgacttaaatgtaataatttttgacatttttacgaaaataacatatggaaaata	Protospacer
.********************.**************************************

66. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to NZ_CP040609 (Campylobacter sp. CFSAN093226 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.892

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
aatttttgacttaaatgtaataatttttgacatttttacgaaaataacatatggaaaata	Protospacer
.********************.**************************************

67. spacer 1.2|34748|65|NC_022354|CRISPRCasFinder matches to CP002030 (Campylobacter jejuni subsp. jejuni ICDCCJ07001 plasmid pTet, complete sequence) position: , mismatch: 7, identity: 0.892

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
aatttttgacttaaatgtaataatttttgacatttttacgaaaataacatatggaaaata	Protospacer
.********************.**************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 1781

Campylobacter_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002804244.1\|626_893_-	hypothetical protein	NA	NA	NA	NA
WP_002790730.1\|895_1456_-	hypothetical protein	NA	NA	NA	NA
WP_002779704.1\|1514_1781_-	hypothetical protein	A0A2R3ZY63	Campylobacter_phage	6.8e-39	90.4

DBSCAN-SWA_2

4984 : 14703

Streptococcus_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001096887.1\|4984_5779_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	E4ZFP6	Streptococcus_phage	2.3e-154	100.0
WP_002817934.1\|5862_7146_-\|transposase	transposase	A0A1S5RFS3	Helicobacter_phage	4.5e-144	62.9
WP_002782963.1\|7132_7771_-\|transposase	IS607-like element ISChh1 family transposase	A0A1S5RGS9	Helicobacter_phage	1.6e-97	86.8
WP_002779755.1\|8282_8456_-	cysteine-rich KTR domain-containing protein	D0R0F6	Streptococcus_phage	4.6e-28	100.0
WP_002779752.1\|8507_10427_-	tetracycline resistance ribosomal protection protein Tet(O)	A0A1B0RXH7	Streptococcus_phage	0.0e+00	98.3
WP_002779751.1\|10785_10965_-	hypothetical protein	NA	NA	NA	NA
WP_002790581.1\|10983_12405_-	hypothetical protein	NA	NA	NA	NA
WP_002779644.1\|12510_14703_-	DNA topoisomerase 3	A0A1X9I6W8	Streptococcus_phage	3.8e-18	23.3

DBSCAN-SWA_3

26065 : 27627

Yersinia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002779629.1\|26065_26488_-	single-stranded DNA-binding protein	A9DEQ4	Yersinia_phage	1.7e-12	37.3
WP_002779628.1\|26521_27073_-	hypothetical protein	NA	NA	NA	NA
WP_002779627.1\|27069_27627_-	Rha family transcriptional regulator	X2KM03	Campylobacter_phage	7.4e-19	50.8

DBSCAN-SWA_4

31569 : 32184

Bacteroides_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002803413.1\|31569_32184_+	recombinase family protein	H2A0H0	Bacteroides_phage	5.4e-15	33.0

DBSCAN-SWA_5

35781 : 37008

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002823310.1\|35781_37008_-	toprim domain-containing protein	A0A1W6JT61	Escherichia_phage	2.3e-20	31.1

DBSCAN-SWA_6

40818 : 41430

Burkholderia_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031263757.1\|40818_41430_-	NYN domain-containing protein	A4JWQ6	Burkholderia_virus	6.2e-27	43.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_022353

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_022353_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_022353_1

1417439-1417518

Orphan

Consensus_repeat	Method
TCTTTTTGTTCTTTTAAAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_022353_1

>merge|NC_022353|1|1417439-1417518|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTCTTTTTTAGCTTTATACTCAGCCTTGCTCATATAATCTTTTTGTTCTTTTAAAGCATC

>NC_022353|1|1|1417439-1417518|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTC	TTTTTTAGCTTTATACTCAGCCTTGCTCATATAA
TCTTTTTGTTCTTTTAAAGCATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_022353.2\|WP_002779147.1\|1409148_1409373_+\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|224830
NC_022353.2\|WP_002858238.1\|1417037_1417364_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
NC_022353.2\|WP_002855528.1\|1413533_1414205_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NC_022353.2\|WP_002780440.1\|1420194_1420614_-\|hypothetical-protein	unknown	unknown	unknown
NC_022353.2\|WP_002852401.1\|1403360_1403723_+\|RidA-family-protein	unknown	unknown	gnl\|CDD\|129116
NC_022353.2\|WP_002857981.1\|1423162_1424347_-\|capsule-polysaccharide-modification-protein-KpsS	unknown	unknown	gnl\|CDD\|226092
NC_022353.2\|WP_010891933.1\|1417819_1419208_-\|phosphoglucosamine-mutase-PgmL	unknown	unknown	gnl\|CDD\|100091
NC_022353.2\|WP_002858462.1\|1426409_1426922_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|235498
NC_022353.2\|WP_002857891.1\|1424343_1426413_-\|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226093
NC_022353.2\|WP_002858404.1\|1426911_1427673_-\|CTP:phosphoglutamine-cytidylyltransferase	unknown	unknown	gnl\|CDD\|224134
NC_022353.2\|WP_002858304.1\|1421968_1423090_-\|membrane-protein	unknown	unknown	unknown
NC_022353.2\|WP_002855324.1\|1414201_1415404_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NC_022353.2\|WP_002857939.1\|1419846_1420194_+\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|223807
NC_022353.2\|WP_002780453.1\|1415406_1416405_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NC_022353.2\|WP_002780438.1\|1420610_1421972_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NC_022353.2\|WP_002857989.1\|1406350_1407718_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|176469
NC_022353.2\|WP_002780456.1\|1412705_1413530_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|181416
NC_022353.2\|WP_002780449.1\|1416464_1417010_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|223985
NC_022353.2\|WP_002858455.1\|1411208_1412702_-\|hydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|224654
NC_022353.2\|WP_002780442.1\|1419310_1419847_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|181433

Protein	Function_ID	Function_description	E-value
NC_022353.2\|WP_002779147.1\|1409148_1409373_+\|ferrous-iron-transport-protein-A	gnl\|CDD\|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	1.69416e-22
NC_022353.2\|WP_002858238.1\|1417037_1417364_+\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	1.85906e-37
NC_022353.2\|WP_002855528.1\|1413533_1414205_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.79646e-86
NC_022353.2\|WP_002852401.1\|1403360_1403723_+\|RidA-family-protein	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	1.81634e-55
NC_022353.2\|WP_002857981.1\|1423162_1424347_-\|capsule-polysaccharide-modification-protein-KpsS	gnl\|CDD\|226092	COG3562, KpsS, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NC_022353.2\|WP_010891933.1\|1417819_1419208_-\|phosphoglucosamine-mutase-PgmL	gnl\|CDD\|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NC_022353.2\|WP_002858462.1\|1426409_1426922_-\|adenylyl-sulfate-kinase	gnl\|CDD\|235498	PRK05541, PRK05541, adenylylsulfate kinase; Provisional.	1.00012e-100
NC_022353.2\|WP_002857891.1\|1424343_1426413_-\|capsular-polysaccharide-biosynthesis-protein	gnl\|CDD\|226093	COG3563, KpsC, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NC_022353.2\|WP_002858404.1\|1426911_1427673_-\|CTP:phosphoglutamine-cytidylyltransferase	gnl\|CDD\|224134	COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane].	3.82934e-76
NC_022353.2\|WP_002855324.1\|1414201_1415404_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NC_022353.2\|WP_002857939.1\|1419846_1420194_+\|holo-ACP-synthase	gnl\|CDD\|223807	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism].	7.85738e-40
NC_022353.2\|WP_002780453.1\|1415406_1416405_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	2.96117e-168
NC_022353.2\|WP_002780438.1\|1420610_1421972_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	3.85034e-79
NC_022353.2\|WP_002857989.1\|1406350_1407718_+\|adenylosuccinate-lyase	gnl\|CDD\|176469	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.	0
NC_022353.2\|WP_002780456.1\|1412705_1413530_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|181416	PRK08415, PRK08415, enoyl-[acyl-carrier-protein] reductase FabI.	0
NC_022353.2\|WP_002780449.1\|1416464_1417010_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|223985	COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism].	3.69536e-59
NC_022353.2\|WP_002858455.1\|1411208_1412702_-\|hydrogenase-small-subunit	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	1.777e-157
NC_022353.2\|WP_002780442.1\|1419310_1419847_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|181433	PRK08455, fliL, flagellar basal body-associated protein FliL; Reviewed.	1.30474e-91

>NC_022353.2|WP_002858238.1|1417037_1417364_+|ribosome-silencing-factor
MQERIDLIVKILDEKKAENIKTIDMSEQEYFVKYVIIAATLGERHALSLIDELKTRLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLENLKKGRV
>NC_022353.2|WP_002780449.1|1416464_1417010_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKIALFGGSFDPPHNGHNSVVLEALEKLDIDKLIIMPTYINPFKQSFSADEKQRFLWVKKLWGHLPKVEICDFEIRQKRPVPSIESVKYLYKLYNPSKFYLLIGADHLEKLHLWHDFEKLNSLVEFVIANRNDIGIPKNFKDLKTNKKIASSFIRDTLNTNEVCEEIKDEVKKYYEKLQKN
>NC_022353.2|WP_002780453.1|1415406_1416405_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYLFKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLTMAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCRVLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVMPELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAAATNLKGILMVDDDERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA
>NC_022353.2|WP_002855324.1|1414201_1415404_-|phosphoglycerate-kinase
MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSKENE
>NC_022353.2|WP_002855528.1|1413533_1414205_-|triose-phosphate-isomerase
MIFAANLKCNHTRASFKIYAKILNKTMGVKCDDIIVFPPSIAFLENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKFDFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGVSAQSTDIAKVLEFLASLTKVPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFIKLIKG
>NC_022353.2|WP_002780456.1|1412705_1413530_-|enoyl-ACP-reductase-FabI
MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALKKRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENSFLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVAKAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNVSIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG
>NC_022353.2|WP_002858455.1|1411208_1412702_-|hydrogenase-small-subunit
MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHETLMAANGTKAEELLEYVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFALFGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEELKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYAFIEQNFDENPMPSKDFWKYLEISFILVKGAFLKDKNDFLIVAKNYAFKHASPYDFKLNMNAEKPKLDVSKSFRMTLIYLCGGLDFEGVAYSILKAFEDNIAKISSLKAS
>NC_022353.2|WP_002779147.1|1409148_1409373_+|ferrous-iron-transport-protein-A
MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSSLKNATIMVELDTSCVILRSDEAKTIEVNLI
>NC_022353.2|WP_002857989.1|1406350_1407718_+|adenylosuccinate-lyase
MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKAQAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEYVHFRVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQALPITFGHKVAIWLSELDRHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLENLGLEVPNISWQSTRDRFIELGFVLGNINATFNKIAHQLLILSHNEIDEVAEPFGKGQVGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMFLMLSVVLANMKFALSDLEVKKDKMLKNLDTLKGFVLAERVMFALSDHYGKQHAHEIVYENAMLGIEQQKTFKEVLLADTRVSQVLKEKDIDALLDATSYVGYAPKLVDEFLAKIKNSAILK
>NC_022353.2|WP_002852401.1|1403360_1403723_+|RidA-family-protein
MSNYPKAIGPYSAYREVNGLLFISGQLPINPASGEIESSDIKEQTKQSLKNIGAILEENGISYDKVIKTTCFLADINDFVAFNEIYAEFFKAPYPARSAFAVKDLPKKAKVEIEIIAQKG
>NC_022353.2|WP_010891933.1|1417819_1419208_-|phosphoglucosamine-mutase-PgmL
MNLKEKMLDVIFREYDIRGLYDKELNEKSVKAIGFCLGQTMLNRGCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSHNPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILNLYVKFMCEQFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKDIPNPRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDGIYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESMVFTLFNDIKARFKN
>NC_022353.2|WP_002780442.1|1419310_1419847_+|flagellar-basal-body-associated-protein-FliL
MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSSSSDESEVKEAPKEEAKADKPKVSAPAQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVKCTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINEILTDGFIKNVYFTDFVVS
>NC_022353.2|WP_002857939.1|1419846_1420194_+|holo-ACP-synthase
MRVGCDIIAISRIEKIHSRHGKNFLDKFLNPKEQILIKNPATLAGLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSISHDNGFAIAIVAVV
>NC_022353.2|WP_002780440.1|1420194_1420614_-|hypothetical-protein
MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLGYLFIVIIGIFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVIKITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK
>NC_022353.2|WP_002780438.1|1420610_1421972_-|cytochrome-P450
MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYVKMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRELLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMSSKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDCKRAKAGDVIRQVLSDIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSLTWTLYLLSLYPKEQEKAYEEITQVLQGGVIEISHLRQFKYLTNIFKESLRLYPPVGFFAREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPFGVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSKRKL
>NC_022353.2|WP_002858304.1|1421968_1423090_-|membrane-protein
MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIKADLSKIEKNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIKFGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLNHFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYELVLVAHSVGTIVCIEVLECILRQNLDLSLLHKLKILTLGECIPLVSYQKKADEFRKKLEFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKIKRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI
>NC_022353.2|WP_002857981.1|1423162_1424347_-|capsule-polysaccharide-modification-protein-KpsS
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAVKMRKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQNKKIDAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKFMAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYFKLINDLSRKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTKVCGNAFYNFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK
>NC_022353.2|WP_002857891.1|1424343_1426413_-|capsular-polysaccharide-biosynthesis-protein
MKYYSISKKLIANVRNFYTISLYKKNLKIKKDDLFFGWGRKKSGLKAMNLAKKYKAKFILLEDGFIRSLNLGVENSPSFSMVKDDIGIYYDATMPSKLENLLNTCEFKDEEIKQAKKAIELIKKYKISKYNNNLDIPDNYFQKDEKRVLIITQTANDASLEFGLAKDFKTLDMIKDAIKENPKSTIYIKIHPDVLSGKKQSDLDLNSLPKECILITENFNPIALLEFFDKVYTKTSGMGFEALMQECECICYGMPFYAGWGLTKDKLECKRRMQKRSLEEVFYAAYILYAEYFNPYLNQKSNIFDTIQTLAKYKDIEKVNSNKLFMLGFTLWKRHFIKPFFKAKDNEIIFLNSLKSLARYKLKENDKFFIWGKRIDYNALKTTLIKKAQDENLLHFTPKISLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKASKLEELLQNEIFDENMLNRAKNIIKILLENRFSKYNGLKHEDLKINAKIGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRAKNQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIVKDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKYRCERRIRKLSLEELVAGALIIYPRYINPKTKTLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTFMLRKIRRFYEFLAKK
>NC_022353.2|WP_002858462.1|1426409_1426922_-|adenylyl-sulfate-kinase
MKNNPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDELREILGHYAYDRQGRIDMALKRAKFAKFLNDQGMMVIVTTISMFNEIYDYNRKQLKNYYEIYIECDMHELIQRDQKGLYTKALNKEIDNVVGVDIEFDKPEADLVINNSCRNNLEEKVELIIKKLAL
>NC_022353.2|WP_002858404.1|1426911_1427673_-|CTP:phosphoglutamine-cytidylyltransferase
MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSAGINEIAVVGGYLNDVLKNYLNKYDIEHFFINSKYDKTNMVHTFFCAKDFMLKCIEEKQDLIISYADIVYFQDCVQKLINAKEELAIVVDKSWCKLWSKRFANPLEDAETLKMTNGYIIELGKKANAYDEIEAQYIGLFKFSYQFLSEVIAFYEMLDRDILYDNKNFENMYMTSFLQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIEK

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Crispr_ID: NC_022353_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_022353_2

1533138-1533437

orTypeII

Consensus_repeat	Method
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRT

4 spacers

cas2,cas1,cas9

The CRISPR arrays of NC_022353_2

>merge|NC_022353|2|1533138-1533437|CRISPRCasFinder,CRT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTTTCCAAAGTTTCATTAGTTGAATTTAACTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTTATAACCGAAAAAAGAGAGCATTACACTAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAAAACTAGAACCTTCATGCCTTTTTAAACTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTGGGGAGAAAATGAGCAATGGATAAGAGAGGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NC_022353|2|2|1533138-1533437|CRISPRCasFinder
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTCCAAAGTTTCATTAGTTGAATTTAACT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTATAACCGAAAAAAGAGAGCATTACACTA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AAAACTAGAACCTTCATGCCTTTTTAAACT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TGGGGAGAAAATGAGCAATGGATAAGAGAG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NC_022353|2|1|1533138-1533437|CRT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTCCAAAGTTTCATTAGTTGAATTTAACT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTATAACCGAAAAAAGAGAGCATTACACTA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AAAACTAGAACCTTCATGCCTTTTTAAACT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TGGGGAGAAAATGAGCAATGGATAAGAGAG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_022353.2\|WP_170876396.1\|1533581_1533995_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NC_022353.2\|WP_002851155.1\|1542620_1543658_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NC_022353.2\|WP_002851537.1\|1527157_1527349_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236534
NC_022353.2\|WP_002851173.1\|1541168_1541918_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NC_022353.2\|WP_002851546.1\|1543722_1544172_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NC_022353.2\|WP_002851407.1\|1541892_1542624_+\|glucosaminidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225539
NC_022353.2\|WP_002858341.1\|1534892_1537847_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NC_022353.2\|WP_002855462.1\|1544301_1545522_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|235168
NC_022353.2\|WP_002858205.1\|1529612_1531154_+\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|225043
NC_022353.2\|WP_002781229.1\|1531377_1531824_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NC_022353.2\|WP_002857949.1\|1531155_1531377_+\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|224888
NC_022353.2\|WP_002851502.1\|1527323_1528037_-\|molecular-chaperone-TorD-family-protein	unknown	unknown	gnl\|CDD\|225916
NC_022353.2\|WP_002851264.1\|1523715_1524357_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319893
NC_022353.2\|WP_002851320.1\|1539516_1540506_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NC_022353.2\|WP_002851523.1\|1540566_1541172_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NC_022353.2\|WP_002858151.1\|1531827_1533018_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|223380
NC_022353.2\|WP_002858431.1\|1528340_1529489_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
NC_022353.2\|WP_002851174.1\|1522786_1523719_-\|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl\|CDD\|130645
NC_022353.2\|WP_010891941.1\|1524353_1527158_-\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|239153
NC_022353.2\|WP_002797819.1\|1534005_1534896_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851

Protein	Function_ID	Function_description	E-value
NC_022353.2\|WP_170876396.1\|1533581_1533995_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.67561e-55
NC_022353.2\|WP_002851155.1\|1542620_1543658_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.54942e-34
NC_022353.2\|WP_002851537.1\|1527157_1527349_-\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00441722
NC_022353.2\|WP_002851173.1\|1541168_1541918_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	4.97072e-93
NC_022353.2\|WP_002851546.1\|1543722_1544172_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.92874e-51
NC_022353.2\|WP_002851407.1\|1541892_1542624_+\|glucosaminidase-domain-containing-protein	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	2.12305e-102
NC_022353.2\|WP_002858341.1\|1534892_1537847_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NC_022353.2\|WP_002855462.1\|1544301_1545522_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|235168	PRK03868, PRK03868, glucose-6-phosphate isomerase; Provisional.	0
NC_022353.2\|WP_002858205.1\|1529612_1531154_+\|multicopper-oxidase-CueO	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	2.73566e-121
NC_022353.2\|WP_002781229.1\|1531377_1531824_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	1.4187e-43
NC_022353.2\|WP_002857949.1\|1531155_1531377_+\|MoaD/ThiS-family-protein	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	2.76562e-11
NC_022353.2\|WP_002851502.1\|1527323_1528037_-\|molecular-chaperone-TorD-family-protein	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.00059716
NC_022353.2\|WP_002851264.1\|1523715_1524357_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
NC_022353.2\|WP_002851320.1\|1539516_1540506_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NC_022353.2\|WP_002851523.1\|1540566_1541172_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	5.24929e-70
NC_022353.2\|WP_002858151.1\|1531827_1533018_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	2.37307e-143
NC_022353.2\|WP_002858431.1\|1528340_1529489_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NC_022353.2\|WP_002851174.1\|1522786_1523719_-\|formate-dehydrogenase-subunit-gamma	gnl\|CDD\|130645	TIGR01583, Formate_dehydrogenase_cytochrome_b556_subunit, formate dehydrogenase, gamma subunit. This model represents the gamma chain of the gamma proteobacteria (and Aquifex aolicus) formate dehydrogenase. This subunit is integral to the cytoplasmic membrane, consisting of 4 transmembrane helices, and receives electrons from the beta subunit. The entire E. coli formate dehydrogenase N (nitrate-inducible form) has been crystallized. The gamma subunit contains two cytochromes, heme b(P) and heme b(C) near the periplasmic and cytoplasmic sides of the membrane respectively. The electron acceptor quinone binds at the cytoplasmic heme histidine ligand. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	4.78832e-90
NC_022353.2\|WP_010891941.1\|1524353_1527158_-\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NC_022353.2\|WP_002797819.1\|1534005_1534896_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.93781e-121

>NC_022353.2|WP_002858151.1|1531827_1533018_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENIRIENNTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDIIFMP
>NC_022353.2|WP_002781229.1|1531377_1531824_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYESLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NC_022353.2|WP_002857949.1|1531155_1531377_+|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFNENTKLKDGDKIALLPPVCGG
>NC_022353.2|WP_002858205.1|1529612_1531154_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDKMMVKEESNTLFLANINLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGKSENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEELRLKMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NC_022353.2|WP_002858431.1|1528340_1529489_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTIEGLHFHALCEESAGALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN
>NC_022353.2|WP_002851502.1|1527323_1528037_-|molecular-chaperone-TorD-family-protein
MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NC_022353.2|WP_002851537.1|1527157_1527349_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>NC_022353.2|WP_010891941.1|1524353_1527158_-|formate-dehydrogenase-subunit-alpha
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTVEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NC_022353.2|WP_002851264.1|1523715_1524357_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NC_022353.2|WP_002851174.1|1522786_1523719_-|formate-dehydrogenase-subunit-gamma
MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTFGKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHFIAAISWVILVPTGFVMMFGEVFGGGVFVRVCKNLHAFATILFIISIIPMFLCWIKRMLPASYDIRWMMIVGGYLSKIKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDFNSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYKEEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI
>NC_022353.2|WP_170876396.1|1533581_1533995_-|CRISPR-associated-endonuclease-Cas2
MRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF
>NC_022353.2|WP_002797819.1|1534005_1534896_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQISISSALFNAFAKYKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFILKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NC_022353.2|WP_002858341.1|1534892_1537847_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MVRILAFDIGISSIGWAFSENDELKDCGVRIFTKVENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQSVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDAELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNKTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNYKDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSTKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPEFVYYNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKK
>NC_022353.2|WP_002851320.1|1539516_1540506_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNTFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALSSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKILENSDAFIIGEICINEGIVLE
>NC_022353.2|WP_002851523.1|1540566_1541172_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENALELEKIFSPFSLKNLLKKEKKIDRKILGEIVFNNKEAKKILENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGNM
>NC_022353.2|WP_002851173.1|1541168_1541918_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYNFF
>NC_022353.2|WP_002851407.1|1541892_1542624_+|glucosaminidase-domain-containing-protein
MKPIIIFFSLFLIPLFADDLKSGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>NC_022353.2|WP_002851155.1|1542620_1543658_-|ATP-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKINIPIILSTNIKDLNVNGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDNFFEQGVKFEVISFDKFSLGF
>NC_022353.2|WP_002851546.1|1543722_1544172_-|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM
>NC_022353.2|WP_002855462.1|1544301_1545522_-|glucose-6-phosphate-isomerase
MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNLIDESLQFIQDKEYVKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFNKTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLHQEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKKDEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIALIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELLNAQCDATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPGVEVGKLILKNILNS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_022353_2	2.1\|1533174\|30\|NC_022353\|CRISPRCasFinder,CRT	1533174-1533203	30	MN530981	Campylobacter phage DA10, complete genome	33283-33312	0	1.0
NC_022353_2	2.1\|1533174\|30\|NC_022353\|CRISPRCasFinder,CRT	1533174-1533203	30	MG602477	Bacillus phage BCP01, complete genome	154164-154193	8	0.733
NC_022353_2	2.1\|1533174\|30\|NC_022353\|CRISPRCasFinder,CRT	1533174-1533203	30	KX495186	Bacillus phage PK16, complete genome	23957-23986	8	0.733
NC_022353_2	2.2\|1533240\|30\|NC_022353\|CRISPRCasFinder,CRT	1533240-1533269	30	MH220877	Oenococcus phage phiOE33PA, complete genome	32186-32215	8	0.733

1. spacer 2.1|1533174|30|NC_022353|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tttccaaagtttcattagttgaatttaact	CRISPR spacer
tttccaaagtttcattagttgaatttaact	Protospacer
******************************

2. spacer 2.1|1533174|30|NC_022353|CRISPRCasFinder,CRT matches to MG602477 (Bacillus phage BCP01, complete genome) position: , mismatch: 8, identity: 0.733

tttccaaagtttcattagttgaatttaact	CRISPR spacer
ataataaagtttcattagaagaatttaaaa	Protospacer
 *  .*************  ********

3. spacer 2.1|1533174|30|NC_022353|CRISPRCasFinder,CRT matches to KX495186 (Bacillus phage PK16, complete genome) position: , mismatch: 8, identity: 0.733

tttccaaagtttcattagttgaatttaact	CRISPR spacer
ataataaagtttcattagaagaatttaaaa	Protospacer
 *  .*************  ********

4. spacer 2.2|1533240|30|NC_022353|CRISPRCasFinder,CRT matches to MH220877 (Oenococcus phage phiOE33PA, complete genome) position: , mismatch: 8, identity: 0.733

ttataaccgaaaaaagagagcattacacta	CRISPR spacer
aagtaaccgaacaaagaaagcattacaaac	Protospacer
  .******** *****.*********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

123072 : 179828

Campylobacter_phage(57.58%)

tail,transposase,capsid,terminase,tRNA,plate,integrase

attL 140364:140383|attR 188675:188694

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002851719.1\|123072_123828_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	3.1e-28	32.5
WP_002785057.1\|123832_124354_+	cysteine hydrolase family protein	NA	NA	NA	NA
WP_002851895.1\|124353_124968_+	recombination protein RecO	NA	NA	NA	NA
WP_002851664.1\|124964_125372_+	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_002851870.1\|125495_126185_+	hypothetical protein	NA	NA	NA	NA
WP_002851926.1\|126209_127136_-\|tRNA	tRNA-dihydrouridine synthase	NA	NA	NA	NA
WP_002851806.1\|127132_128119_-	hypothetical protein	NA	NA	NA	NA
WP_002851949.1\|128108_128471_-	molecular chaperone DnaK suppressor DksA	NA	NA	NA	NA
WP_002851666.1\|128482_128932_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_002851791.1\|128933_129776_-	acetyl-CoA carboxylase carboxyltransferase subunit beta	NA	NA	NA	NA
WP_002851687.1\|129784_130507_-	inositol monophosphatase	NA	NA	NA	NA
WP_002851708.1\|130506_132726_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_002851653.1\|132802_133630_+	prephenate dehydrogenase	NA	NA	NA	NA
WP_002858680.1\|133709_135083_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_002851689.1\|135082_135967_+	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA
WP_002851789.1\|136005_136407_+\|tRNA	tRNA threonylcarbamoyladenosine biosynthesis protein TsaB	NA	NA	NA	NA
WP_002851909.1\|136415_137294_+	homoserine kinase	NA	NA	NA	NA
WP_002859353.1\|137318_137576_+	YlxR family protein	NA	NA	NA	NA
WP_002908209.1\|137562_140178_+	translation initiation factor IF-2	E3T4N3	Cafeteria_roenbergensis_virus	1.7e-28	28.1
WP_002778650.1\|140174_140537_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
140364:140383	attL	NA	NA	NA	NA
WP_002858729.1\|140526_140970_+	ribosome maturation factor RimP	NA	NA	NA	NA
WP_002804146.1\|141819_142518_-	hypothetical protein	NA	NA	NA	NA
WP_002804144.1\|142517_143192_-	LexA family transcriptional regulator	X2KRC9	Campylobacter_phage	9.8e-26	32.1
WP_002804142.1\|143341_143542_+	hypothetical protein	NA	NA	NA	NA
WP_002876259.1\|143538_145614_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_002806833.1\|145684_146608_+	AAA family ATPase	A0A2H4JAW1	uncultured_Caudovirales_phage	3.9e-09	24.5
WP_002795448.1\|146610_146802_+	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_002824157.1\|146798_146984_+	hypothetical protein	NA	NA	NA	NA
WP_002791419.1\|147042_147384_+	hypothetical protein	NA	NA	NA	NA
WP_002922653.1\|147490_147976_+	host-nuclease inhibitor Gam family protein	A0A2K9VGT9	Faecalibacterium_phage	8.4e-19	33.3
WP_002876317.1\|148034_148997_+	hypothetical protein	NA	NA	NA	NA
WP_002784531.1\|148993_149263_+	hypothetical protein	NA	NA	NA	NA
WP_002876316.1\|149262_149955_+	hypothetical protein	NA	NA	NA	NA
WP_002876315.1\|149951_150401_+	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_002873721.1\|150447_150723_+	hypothetical protein	NA	NA	NA	NA
WP_002876312.1\|150714_151386_-	endonuclease	NA	NA	NA	NA
WP_002784523.1\|151479_151764_+	DNA-binding protein	NA	NA	NA	NA
WP_002872705.1\|151885_152092_+	CJH_07325 family protein	J9SI91	Campylobacter_phage	2.8e-32	100.0
WP_002872706.1\|152078_152870_+	hypothetical protein	NA	NA	NA	NA
WP_002872707.1\|152834_153812_-\|tail	tail protein	A0A219Y9Y2	Aeromonas_phage	6.2e-13	25.7
WP_002784520.1\|153805_153997_-\|tail	tail protein X	NA	NA	NA	NA
WP_002876309.1\|153989_154364_-\|tail	phage tail protein	NA	NA	NA	NA
WP_002909482.1\|154489_155728_-	hypothetical protein	M4M9M5	Vibrio_phage	1.9e-19	29.8
WP_002872709.1\|155729_157100_-	DUF935 family protein	A0A2H4JHL1	uncultured_Caudovirales_phage	4.5e-17	26.6
WP_002875116.1\|157109_158780_-\|terminase	phage terminase large subunit	H1ZZE1	Pseudomonas_virus	3.0e-92	41.4
WP_002803360.1\|158779_159379_-	DUF1804 family protein	NA	NA	NA	NA
WP_002855185.1\|159371_159830_-	DUF1320 family protein	NA	NA	NA	NA
WP_002876307.1\|159945_160923_-\|capsid	major capsid protein	R9TRN2	Rhizobium_phage	5.6e-06	23.4
WP_002875114.1\|160925_161453_-	hypothetical protein	NA	NA	NA	NA
WP_002876306.1\|161455_162271_-	hypothetical protein	A0A2H4JAW3	uncultured_Caudovirales_phage	2.9e-24	48.4
WP_002784501.1\|162272_162707_-	hypothetical protein	NA	NA	NA	NA
WP_021034186.1\|162855_163245_+	DUF882 domain-containing protein	A0A1X9Q0V8	Human_gokushovirus	1.7e-22	46.7
WP_002854893.1\|163255_163597_+	hypothetical protein	NA	NA	NA	NA
WP_021036343.1\|163593_163842_+	hypothetical protein	NA	NA	NA	NA
WP_002784492.1\|163953_164268_+	hypothetical protein	NA	NA	NA	NA
WP_002876443.1\|164267_164900_+\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	1.7e-08	34.6
WP_002784486.1\|164908_165100_+	hypothetical protein	NA	NA	NA	NA
WP_002795239.1\|165096_165387_+	GPW/gp25 family protein	Q8H9N4	Vibrio_phage	2.7e-09	40.8
WP_002876444.1\|165383_166550_+\|plate	baseplate J/gp47 family protein	Q8H9N3	Vibrio_phage	3.0e-14	24.6
WP_002855112.1\|166546_167167_+\|tail	phage tail protein I	A7YH02	Campylobacter_phage	8.7e-61	100.0
WP_002875274.1\|167166_168198_+\|tail	phage tail protein	A7YGA7	Campylobacter_phage	2.5e-190	100.0
WP_002875277.1\|168222_168729_+	DUF4376 domain-containing protein	A7YGA6	Campylobacter_phage	2.0e-87	100.0
WP_002922150.1\|168725_169097_+	DUF1353 domain-containing protein	A7YGA5	Campylobacter_phage	8.8e-69	100.0
WP_021034188.1\|169196_170210_+	hypothetical protein	A7YGA4	Campylobacter_phage	2.7e-192	100.0
WP_002922156.1\|170220_171414_+\|tail	tail sheath protein	A7YGA3	Campylobacter_phage	5.0e-198	100.0
WP_002865376.1\|171440_171950_+\|tail	phage major tail tube protein	A7YG76	Campylobacter_phage	3.3e-90	100.0
WP_002843342.1\|172102_172342_+\|tail	phage tail assembly protein	A7YGZ3	Campylobacter_phage	3.2e-11	62.5
WP_002784655.1\|172453_172759_-	hypothetical protein	A7YG98	Campylobacter_phage	4.7e-36	100.0
WP_002875579.1\|172800_175023_+\|tail	phage tail tape measure protein	A7YG97	Campylobacter_phage	0.0e+00	100.0
WP_002875578.1\|175026_175515_+	phage virion morphogenesis protein	A7YG96	Campylobacter_phage	1.6e-89	100.0
WP_002922158.1\|175619_176435_+	DNA adenine methylase	A7YG95	Campylobacter_phage	6.3e-152	100.0
WP_019109140.1\|176462_176750_-	hypothetical protein	A7YG94	Campylobacter_phage	1.9e-47	100.0
WP_002875224.1\|176829_177024_-	hypothetical protein	A7YG72	Campylobacter_phage	5.1e-28	98.4
WP_002865000.1\|177033_177354_-	hypothetical protein	A7YGI4	Campylobacter_phage	1.3e-52	100.0
WP_019108975.1\|177434_178064_-	S24 family peptidase	A7YGK7	Campylobacter_phage	2.6e-60	100.0
WP_002908983.1\|178130_179828_-	AAA family ATPase	X2KLG0	Campylobacter_phage	1.9e-89	38.3
188675:188694	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1246717 : 1294715

Campylobacter_phage(94.64%)

tail,capsid,protease,head,portal,terminase,tRNA,integrase

attL 1256344:1256361|attR 1271443:1271460

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002858315.1\|1246717_1247923_-\|tRNA	tyrosine--tRNA ligase	A0A1S6UA79	Serratia_phage	4.9e-28	29.9
WP_002858057.1\|1247934_1250130_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1B1IUF0	uncultured_Mediterranean_phage	1.4e-07	44.0
WP_002853464.1\|1250113_1250338_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_002858454.1\|1250348_1251068_-	UMP kinase	NA	NA	NA	NA
WP_002853860.1\|1251119_1252313_-	M23 family metallopeptidase	NA	NA	NA	NA
WP_002853622.1\|1252309_1253116_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_002853534.1\|1253102_1253768_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-17	34.8
WP_002858203.1\|1253837_1255016_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_014516824.1\|1255015_1256251_-	fibronectin type III domain-containing protein	NA	NA	NA	NA
WP_002858282.1\|1256195_1257164_-	RluA family pseudouridine synthase	NA	NA	NA	NA
1256344:1256361	attL	NA	NA	NA	NA
WP_002853654.1\|1257241_1258342_+	rod shape-determining protein RodA	NA	NA	NA	NA
WP_002787311.1\|1258680_1259856_+\|integrase	site-specific integrase	X2KXI6	Campylobacter_phage	1.7e-222	100.0
WP_002787309.1\|1259852_1260059_-	helix-turn-helix domain-containing protein	X2KXB9	Campylobacter_phage	4.8e-32	100.0
WP_002787307.1\|1260060_1260414_-	hypothetical protein	X2KRB4	Campylobacter_phage	2.1e-56	100.0
WP_002787306.1\|1260431_1261187_-	site-specific DNA-methyltransferase	X2KR14	Campylobacter_phage	9.6e-147	100.0
WP_002787304.1\|1261164_1261431_-	hypothetical protein	X2KLR9	Campylobacter_phage	4.7e-40	100.0
WP_002858334.1\|1261414_1261786_-	hypothetical protein	X2KQ09	Campylobacter_phage	1.2e-60	100.0
WP_011049924.1\|1261786_1262011_-	hypothetical protein	X2KXC3	Campylobacter_phage	4.1e-37	100.0
WP_002869676.1\|1262019_1262781_-	hypothetical protein	X2KQ45	Campylobacter_phage	4.0e-124	99.5
WP_002787295.1\|1262717_1263032_-	hypothetical protein	X2KR17	Campylobacter_phage	1.6e-50	100.0
WP_002787293.1\|1263110_1263431_-	hypothetical protein	X2KLS2	Campylobacter_phage	1.4e-51	100.0
WP_002787289.1\|1263818_1264055_-	hypothetical protein	X2KXC5	Campylobacter_phage	8.1e-36	100.0
WP_002787287.1\|1264068_1264836_-	hypothetical protein	X2KRC2	Campylobacter_phage	3.7e-138	100.0
WP_002787283.1\|1264973_1265204_-	hypothetical protein	X2KLS5	Campylobacter_phage	5.0e-38	100.0
WP_002787281.1\|1265169_1265433_-	hypothetical protein	X2KQ17	Campylobacter_phage	4.1e-44	100.0
WP_002787279.1\|1265489_1265777_-	hypothetical protein	X2KXC8	Campylobacter_phage	2.4e-50	100.0
WP_011049928.1\|1265829_1266561_-	phage antirepressor KilAC domain-containing protein	X2KRC4	Campylobacter_phage	2.8e-127	100.0
WP_002912332.1\|1266991_1267276_-	hypothetical protein	X2KLS8	Campylobacter_phage	4.5e-41	100.0
WP_002870299.1\|1267272_1267476_-	hypothetical protein	X2KQ19	Campylobacter_phage	4.8e-29	100.0
WP_002870336.1\|1267680_1268334_+	hypothetical protein	X2KXC9	Campylobacter_phage	1.2e-113	100.0
WP_002870274.1\|1268568_1269231_+	S24/S26 family peptidase	X2KRC9	Campylobacter_phage	4.2e-122	100.0
WP_011049930.1\|1269236_1269890_+	DNA/RNA non-specific endonuclease	X2KR27	Campylobacter_phage	9.3e-122	100.0
WP_002870263.1\|1269906_1270188_+	PLDc N-terminal domain-containing protein	X2KLT3	Campylobacter_phage	9.3e-47	100.0
WP_002913413.1\|1270201_1270399_-	hypothetical protein	X2KQ22	Campylobacter_phage	4.4e-27	100.0
WP_002870261.1\|1270316_1270736_-	hypothetical protein	X2KXD3	Campylobacter_phage	2.9e-52	100.0
WP_002870260.1\|1270964_1271426_-	hypothetical protein	X2KRD2	Campylobacter_phage	1.4e-84	100.0
WP_002788854.1\|1271474_1272758_-	hypothetical protein	X2KLT6	Campylobacter_phage	1.6e-239	100.0
1271443:1271460	attR	NA	NA	NA	NA
WP_019108750.1\|1272754_1273129_-	DUF1353 domain-containing protein	X2KQ25	Campylobacter_phage	1.2e-68	100.0
WP_002869963.1\|1273121_1273505_-	hypothetical protein	X2KXD5	Campylobacter_phage	2.4e-61	100.0
WP_002789149.1\|1273501_1274137_-	DUF4376 domain-containing protein	X2KRD7	Campylobacter_phage	1.3e-96	100.0
WP_002798141.1\|1274149_1274599_-	hypothetical protein	X2KR34	Campylobacter_phage	4.6e-80	100.0
WP_011049933.1\|1274600_1276166_-	hypothetical protein	X2KLU0	Campylobacter_phage	3.3e-210	100.0
WP_002869967.1\|1276158_1276791_-	hypothetical protein	X2KQ29	Campylobacter_phage	6.0e-110	100.0
WP_002788295.1\|1276787_1277105_-\|head,tail	head-tail adaptor protein	X2KXD7	Campylobacter_phage	9.2e-51	100.0
WP_002788293.1\|1277117_1277555_-\|head,tail	phage gp6-like head-tail connector protein	X2KR38	Campylobacter_phage	1.8e-76	100.0
WP_002788291.1\|1277551_1277803_-	hypothetical protein	X2KLU2	Campylobacter_phage	3.7e-18	100.0
WP_002788288.1\|1277813_1278980_-\|capsid	phage major capsid protein	X2KQ31	Campylobacter_phage	2.8e-214	100.0
WP_002788287.1\|1278996_1279554_-\|head,protease	HK97 family phage prohead protease	X2KXE1	Campylobacter_phage	1.1e-96	100.0
WP_002788286.1\|1279639_1280509_-	hypothetical protein	X2KRE5	Campylobacter_phage	3.9e-168	100.0
WP_019108749.1\|1280521_1286221_-	hypothetical protein	X2KR41	Campylobacter_phage	0.0e+00	100.0
WP_002788283.1\|1286280_1286619_+	hypothetical protein	X2KLU6	Campylobacter_phage	1.6e-56	100.0
WP_002788282.1\|1286610_1286826_-	hypothetical protein	X2KXE3	Campylobacter_phage	2.2e-32	100.0
WP_002788281.1\|1286906_1287263_-	hypothetical protein	X2KRE9	Campylobacter_phage	1.8e-58	100.0
WP_002788279.1\|1287259_1288240_-	hypothetical protein	X2KR44	Campylobacter_phage	3.9e-180	100.0
WP_002869970.1\|1288386_1288611_+	hypothetical protein	X2KLV0	Campylobacter_phage	5.7e-31	100.0
WP_002869971.1\|1288607_1288871_+	type II toxin-antitoxin system RelE/ParE family toxin	X2KQ37	Campylobacter_phage	2.9e-34	100.0
WP_002788276.1\|1288858_1289209_-	hypothetical protein	X2KXE7	Campylobacter_phage	7.3e-57	100.0
WP_002800770.1\|1289209_1289752_-	HK97 gp10 family phage protein	X2KRF4	Campylobacter_phage	5.7e-93	100.0
WP_002788272.1\|1289748_1290921_-\|portal	phage portal protein	X2KR48	Campylobacter_phage	3.1e-216	100.0
WP_002913302.1\|1291080_1291515_-	type II toxin-antitoxin system PemK/MazF family toxin	X2KLV2	Campylobacter_phage	2.4e-78	100.0
WP_002913304.1\|1291569_1293195_-\|terminase	terminase large subunit	X2KQ40	Campylobacter_phage	0.0e+00	100.0
WP_002913306.1\|1293198_1293837_-\|terminase	P27 family phage terminase small subunit	X2KXE9	Campylobacter_phage	1.9e-111	100.0
WP_002869973.1\|1294087_1294438_-	HNH endonuclease	X2KRF8	Campylobacter_phage	1.9e-65	100.0
WP_002788257.1\|1294424_1294715_-	hypothetical protein	X2KM44	Campylobacter_phage	2.6e-15	97.4

DBSCAN-SWA_3

1436096 : 1442732

Tupanvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002857908.1\|1436096_1436762_-	D-glycero-D-manno-heptose 1-phosphate guanosyltransferase	A0A2K9L821	Tupanvirus	4.1e-08	26.6
WP_002857991.1\|1436749_1437355_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	2.2e-16	35.0
WP_002858413.1\|1437342_1438362_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	2.7e-59	40.7
WP_002857889.1\|1438381_1439233_-	FkbM family methyltransferase	NA	NA	NA	NA
WP_002858299.1\|1439251_1440193_-	NAD-dependent epimerase/dehydratase	A0A0F7LC08	uncultured_marine_virus	1.0e-73	46.1
WP_002864205.1\|1440216_1441257_-	GDP-L-fucose synthase	M1HWW2	Paramecium_bursaria_Chlorella_virus	1.7e-69	44.4
WP_002864204.1\|1441256_1442183_-	hypothetical protein	NA	NA	NA	NA
WP_002858190.1\|1442186_1442732_-	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	A0A1D8EQH2	Escherichia_phage	6.1e-18	32.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_022354

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_022353

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection