CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_022352	Campylobacter jejuni subsp. jejuni 00-2426, complete sequence	1 crisprs	DEDDh,WYL,cas14j,cas2,cas1,cas9,csa3	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_022352_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_022352_1

1378898-1378977

Orphan

Consensus_repeat	Method
TCTTTTTGTTCTTTTAAAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_022352_1

>merge|NC_022352|1|1378898-1378977|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTCTTTTTTAGCTTTATACTCAGCCTTGCTCATATAATCTTTTTGTTCTTTTAAAGCATC

>NC_022352|1|1|1378898-1378977|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTC	TTTTTTAGCTTTATACTCAGCCTTGCTCATATAA
TCTTTTTGTTCTTTTAAAGCATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_022352.2\|WP_002780456.1\|1374164_1374989_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|181416
NC_022352.2\|WP_002780438.1\|1382069_1383431_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NC_022352.2\|WP_002858404.1\|1388370_1389132_-\|CTP:phosphoglutamine-cytidylyltransferase	unknown	unknown	gnl\|CDD\|224134
NC_022352.2\|WP_002858238.1\|1378496_1378823_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
NC_022352.2\|WP_002852401.1\|1364821_1365184_+\|RidA-family-protein	unknown	unknown	gnl\|CDD\|129116
NC_022352.2\|WP_002858304.1\|1383427_1384549_-\|membrane-protein	unknown	unknown	unknown
NC_022352.2\|WP_002857939.1\|1381305_1381653_+\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|223807
NC_022352.2\|WP_002780442.1\|1380769_1381306_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|181433
NC_022352.2\|WP_002857981.1\|1384621_1385806_-\|capsule-polysaccharide-modification-protein-KpsS	unknown	unknown	gnl\|CDD\|226092
NC_022352.2\|WP_002858455.1\|1372667_1374161_-\|hydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|224654
NC_022352.2\|WP_010891933.1\|1379278_1380667_-\|phosphoglucosamine-mutase-PgmL	unknown	unknown	gnl\|CDD\|100091
NC_022352.2\|WP_002779147.1\|1370609_1370834_+\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|224830
NC_022352.2\|WP_002780453.1\|1376865_1377864_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NC_022352.2\|WP_002855528.1\|1374992_1375664_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NC_022352.2\|WP_002780449.1\|1377923_1378469_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|223985
NC_022352.2\|WP_002857891.1\|1385802_1387872_-\|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226093
NC_022352.2\|WP_002858462.1\|1387868_1388381_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|235498
NC_022352.2\|WP_002855324.1\|1375660_1376863_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NC_022352.2\|WP_002857989.1\|1367811_1369179_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|176469
NC_022352.2\|WP_002780440.1\|1381653_1382073_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_022352.2\|WP_002780456.1\|1374164_1374989_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|181416	PRK08415, PRK08415, enoyl-[acyl-carrier-protein] reductase FabI.	0
NC_022352.2\|WP_002780438.1\|1382069_1383431_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	3.85034e-79
NC_022352.2\|WP_002858404.1\|1388370_1389132_-\|CTP:phosphoglutamine-cytidylyltransferase	gnl\|CDD\|224134	COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane].	3.82934e-76
NC_022352.2\|WP_002858238.1\|1378496_1378823_+\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	1.85906e-37
NC_022352.2\|WP_002852401.1\|1364821_1365184_+\|RidA-family-protein	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	1.81634e-55
NC_022352.2\|WP_002857939.1\|1381305_1381653_+\|holo-ACP-synthase	gnl\|CDD\|223807	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism].	7.85738e-40
NC_022352.2\|WP_002780442.1\|1380769_1381306_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|181433	PRK08455, fliL, flagellar basal body-associated protein FliL; Reviewed.	1.30474e-91
NC_022352.2\|WP_002857981.1\|1384621_1385806_-\|capsule-polysaccharide-modification-protein-KpsS	gnl\|CDD\|226092	COG3562, KpsS, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NC_022352.2\|WP_002858455.1\|1372667_1374161_-\|hydrogenase-small-subunit	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	1.777e-157
NC_022352.2\|WP_010891933.1\|1379278_1380667_-\|phosphoglucosamine-mutase-PgmL	gnl\|CDD\|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NC_022352.2\|WP_002779147.1\|1370609_1370834_+\|ferrous-iron-transport-protein-A	gnl\|CDD\|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	1.69416e-22
NC_022352.2\|WP_002780453.1\|1376865_1377864_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	2.96117e-168
NC_022352.2\|WP_002855528.1\|1374992_1375664_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.79646e-86
NC_022352.2\|WP_002780449.1\|1377923_1378469_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|223985	COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism].	3.69536e-59
NC_022352.2\|WP_002857891.1\|1385802_1387872_-\|capsular-polysaccharide-biosynthesis-protein	gnl\|CDD\|226093	COG3563, KpsC, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NC_022352.2\|WP_002858462.1\|1387868_1388381_-\|adenylyl-sulfate-kinase	gnl\|CDD\|235498	PRK05541, PRK05541, adenylylsulfate kinase; Provisional.	1.00012e-100
NC_022352.2\|WP_002855324.1\|1375660_1376863_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NC_022352.2\|WP_002857989.1\|1367811_1369179_+\|adenylosuccinate-lyase	gnl\|CDD\|176469	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.	0

>NC_022352.2|WP_002858238.1|1378496_1378823_+|ribosome-silencing-factor
MQERIDLIVKILDEKKAENIKTIDMSEQEYFVKYVIIAATLGERHALSLIDELKTRLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLENLKKGRV
>NC_022352.2|WP_002780449.1|1377923_1378469_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKIALFGGSFDPPHNGHNSVVLEALEKLDIDKLIIMPTYINPFKQSFSADEKQRFLWVKKLWGHLPKVEICDFEIRQKRPVPSIESVKYLYKLYNPSKFYLLIGADHLEKLHLWHDFEKLNSLVEFVIANRNDIGIPKNFKDLKTNKKIASSFIRDTLNTNEVCEEIKDEVKKYYEKLQKN
>NC_022352.2|WP_002780453.1|1376865_1377864_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYLFKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLTMAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCRVLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVMPELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAAATNLKGILMVDDDERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA
>NC_022352.2|WP_002855324.1|1375660_1376863_-|phosphoglycerate-kinase
MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSKENE
>NC_022352.2|WP_002855528.1|1374992_1375664_-|triose-phosphate-isomerase
MIFAANLKCNHTRASFKIYAKILNKTMGVKCDDIIVFPPSIAFLENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKFDFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGVSAQSTDIAKVLEFLASLTKVPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFIKLIKG
>NC_022352.2|WP_002780456.1|1374164_1374989_-|enoyl-ACP-reductase-FabI
MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALKKRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENSFLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVAKAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNVSIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG
>NC_022352.2|WP_002858455.1|1372667_1374161_-|hydrogenase-small-subunit
MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHETLMAANGTKAEELLEYVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFALFGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEELKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYAFIEQNFDENPMPSKDFWKYLEISFILVKGAFLKDKNDFLIVAKNYAFKHASPYDFKLNMNAEKPKLDVSKSFRMTLIYLCGGLDFEGVAYSILKAFEDNIAKISSLKAS
>NC_022352.2|WP_002779147.1|1370609_1370834_+|ferrous-iron-transport-protein-A
MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSSLKNATIMVELDTSCVILRSDEAKTIEVNLI
>NC_022352.2|WP_002857989.1|1367811_1369179_+|adenylosuccinate-lyase
MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKAQAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEYVHFRVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQALPITFGHKVAIWLSELDRHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLENLGLEVPNISWQSTRDRFIELGFVLGNINATFNKIAHQLLILSHNEIDEVAEPFGKGQVGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMFLMLSVVLANMKFALSDLEVKKDKMLKNLDTLKGFVLAERVMFALSDHYGKQHAHEIVYENAMLGIEQQKTFKEVLLADTRVSQVLKEKDIDALLDATSYVGYAPKLVDEFLAKIKNSAILK
>NC_022352.2|WP_002852401.1|1364821_1365184_+|RidA-family-protein
MSNYPKAIGPYSAYREVNGLLFISGQLPINPASGEIESSDIKEQTKQSLKNIGAILEENGISYDKVIKTTCFLADINDFVAFNEIYAEFFKAPYPARSAFAVKDLPKKAKVEIEIIAQKG
>NC_022352.2|WP_010891933.1|1379278_1380667_-|phosphoglucosamine-mutase-PgmL
MNLKEKMLDVIFREYDIRGLYDKELNEKSVKAIGFCLGQTMLNRGCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSHNPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILNLYVKFMCEQFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKDIPNPRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDGIYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESMVFTLFNDIKARFKN
>NC_022352.2|WP_002780442.1|1380769_1381306_+|flagellar-basal-body-associated-protein-FliL
MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSSSSDESEVKEAPKEEAKADKPKVSAPAQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVKCTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINEILTDGFIKNVYFTDFVVS
>NC_022352.2|WP_002857939.1|1381305_1381653_+|holo-ACP-synthase
MRVGCDIIAISRIEKIHSRHGKNFLDKFLNPKEQILIKNPATLAGLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSISHDNGFAIAIVAVV
>NC_022352.2|WP_002780440.1|1381653_1382073_-|hypothetical-protein
MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLGYLFIVIIGIFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVIKITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK
>NC_022352.2|WP_002780438.1|1382069_1383431_-|cytochrome-P450
MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYVKMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRELLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMSSKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDCKRAKAGDVIRQVLSDIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSLTWTLYLLSLYPKEQEKAYEEITQVLQGGVIEISHLRQFKYLTNIFKESLRLYPPVGFFAREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPFGVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSKRKL
>NC_022352.2|WP_002858304.1|1383427_1384549_-|membrane-protein
MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIKADLSKIEKNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIKFGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLNHFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYELVLVAHSVGTIVCIEVLECILRQNLDLSLLHKLKILTLGECIPLVSYQKKADEFRKKLEFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKIKRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI
>NC_022352.2|WP_002857981.1|1384621_1385806_-|capsule-polysaccharide-modification-protein-KpsS
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAVKMRKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQNKKIDAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKFMAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYFKLINDLSRKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTKVCGNAFYNFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK
>NC_022352.2|WP_002857891.1|1385802_1387872_-|capsular-polysaccharide-biosynthesis-protein
MKYYSISKKLIANVRNFYTISLYKKNLKIKKDDLFFGWGRKKSGLKAMNLAKKYKAKFILLEDGFIRSLNLGVENSPSFSMVKDDIGIYYDATMPSKLENLLNTCEFKDEEIKQAKKAIELIKKYKISKYNNNLDIPDNYFQKDEKRVLIITQTANDASLEFGLAKDFKTLDMIKDAIKENPKSTIYIKIHPDVLSGKKQSDLDLNSLPKECILITENFNPIALLEFFDKVYTKTSGMGFEALMQECECICYGMPFYAGWGLTKDKLECKRRMQKRSLEEVFYAAYILYAEYFNPYLNQKSNIFDTIQTLAKYKDIEKVNSNKLFMLGFTLWKRHFIKPFFKAKDNEIIFLNSLKSLARYKLKENDKFFIWGKRIDYNALKTTLIKKAQDENLLHFTPKISLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKASKLEELLQNEIFDENMLNRAKNIIKILLENRFSKYNGLKHEDLKINAKIGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRAKNQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIVKDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKYRCERRIRKLSLEELVAGALIIYPRYINPKTKTLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTFMLRKIRRFYEFLAKK
>NC_022352.2|WP_002858462.1|1387868_1388381_-|adenylyl-sulfate-kinase
MKNNPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDELREILGHYAYDRQGRIDMALKRAKFAKFLNDQGMMVIVTTISMFNEIYDYNRKQLKNYYEIYIECDMHELIQRDQKGLYTKALNKEIDNVVGVDIEFDKPEADLVINNSCRNNLEEKVELIIKKLAL
>NC_022352.2|WP_002858404.1|1388370_1389132_-|CTP:phosphoglutamine-cytidylyltransferase
MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSAGINEIAVVGGYLNDVLKNYLNKYDIEHFFINSKYDKTNMVHTFFCAKDFMLKCIEEKQDLIISYADIVYFQDCVQKLINAKEELAIVVDKSWCKLWSKRFANPLEDAETLKMTNGYIIELGKKANAYDEIEAQYIGLFKFSYQFLSEVIAFYEMLDRDILYDNKNFENMYMTSFLQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIEK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1208178 : 1256176

Campylobacter_phage(94.64%)

capsid,protease,tail,tRNA,head,integrase,portal,terminase

attL 1217805:1217822|attR 1232904:1232921

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002858315.1\|1208178_1209384_-\|tRNA	tyrosine--tRNA ligase	A0A1S6UA79	Serratia_phage	4.9e-28	29.9
WP_002858057.1\|1209395_1211591_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1B1IUF0	uncultured_Mediterranean_phage	1.4e-07	44.0
WP_002853464.1\|1211574_1211799_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_002858454.1\|1211809_1212529_-	UMP kinase	NA	NA	NA	NA
WP_002853860.1\|1212580_1213774_-	M23 family metallopeptidase	NA	NA	NA	NA
WP_002853622.1\|1213770_1214577_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_002853534.1\|1214563_1215229_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-17	34.8
WP_002858203.1\|1215298_1216477_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_014516824.1\|1216476_1217712_-	fibronectin type III domain-containing protein	NA	NA	NA	NA
WP_002858282.1\|1217656_1218625_-	RluA family pseudouridine synthase	NA	NA	NA	NA
1217805:1217822	attL	NA	NA	NA	NA
WP_002853654.1\|1218702_1219803_+	rod shape-determining protein RodA	NA	NA	NA	NA
WP_002787311.1\|1220141_1221317_+\|integrase	site-specific integrase	X2KXI6	Campylobacter_phage	1.7e-222	100.0
WP_002787309.1\|1221313_1221520_-	helix-turn-helix domain-containing protein	X2KXB9	Campylobacter_phage	4.8e-32	100.0
WP_002787307.1\|1221521_1221875_-	hypothetical protein	X2KRB4	Campylobacter_phage	2.1e-56	100.0
WP_002787306.1\|1221892_1222648_-	site-specific DNA-methyltransferase	X2KR14	Campylobacter_phage	9.6e-147	100.0
WP_002787304.1\|1222625_1222892_-	hypothetical protein	X2KLR9	Campylobacter_phage	4.7e-40	100.0
WP_002858334.1\|1222875_1223247_-	hypothetical protein	X2KQ09	Campylobacter_phage	1.2e-60	100.0
WP_011049924.1\|1223247_1223472_-	hypothetical protein	X2KXC3	Campylobacter_phage	4.1e-37	100.0
WP_002869676.1\|1223480_1224242_-	hypothetical protein	X2KQ45	Campylobacter_phage	4.0e-124	99.5
WP_002787295.1\|1224178_1224493_-	hypothetical protein	X2KR17	Campylobacter_phage	1.6e-50	100.0
WP_002787293.1\|1224571_1224892_-	hypothetical protein	X2KLS2	Campylobacter_phage	1.4e-51	100.0
WP_002787289.1\|1225279_1225516_-	hypothetical protein	X2KXC5	Campylobacter_phage	8.1e-36	100.0
WP_002787287.1\|1225529_1226297_-	hypothetical protein	X2KRC2	Campylobacter_phage	3.7e-138	100.0
WP_002787283.1\|1226434_1226665_-	hypothetical protein	X2KLS5	Campylobacter_phage	5.0e-38	100.0
WP_002787281.1\|1226630_1226894_-	hypothetical protein	X2KQ17	Campylobacter_phage	4.1e-44	100.0
WP_002787279.1\|1226950_1227238_-	hypothetical protein	X2KXC8	Campylobacter_phage	2.4e-50	100.0
WP_011049928.1\|1227290_1228022_-	phage antirepressor KilAC domain-containing protein	X2KRC4	Campylobacter_phage	2.8e-127	100.0
WP_002912332.1\|1228452_1228737_-	hypothetical protein	X2KLS8	Campylobacter_phage	4.5e-41	100.0
WP_002870299.1\|1228733_1228937_-	hypothetical protein	X2KQ19	Campylobacter_phage	4.8e-29	100.0
WP_002870336.1\|1229141_1229795_+	hypothetical protein	X2KXC9	Campylobacter_phage	1.2e-113	100.0
WP_002870274.1\|1230029_1230692_+	S24/S26 family peptidase	X2KRC9	Campylobacter_phage	4.2e-122	100.0
WP_011049930.1\|1230697_1231351_+	DNA/RNA non-specific endonuclease	X2KR27	Campylobacter_phage	9.3e-122	100.0
WP_002870263.1\|1231367_1231649_+	PLDc N-terminal domain-containing protein	X2KLT3	Campylobacter_phage	9.3e-47	100.0
WP_002913413.1\|1231662_1231860_-	hypothetical protein	X2KQ22	Campylobacter_phage	4.4e-27	100.0
WP_002870261.1\|1231777_1232197_-	hypothetical protein	X2KXD3	Campylobacter_phage	2.9e-52	100.0
WP_002870260.1\|1232425_1232887_-	hypothetical protein	X2KRD2	Campylobacter_phage	1.4e-84	100.0
WP_002788854.1\|1232935_1234219_-	hypothetical protein	X2KLT6	Campylobacter_phage	1.6e-239	100.0
1232904:1232921	attR	NA	NA	NA	NA
WP_019108750.1\|1234215_1234590_-	DUF1353 domain-containing protein	X2KQ25	Campylobacter_phage	1.2e-68	100.0
WP_002869963.1\|1234582_1234966_-	hypothetical protein	X2KXD5	Campylobacter_phage	2.4e-61	100.0
WP_002789149.1\|1234962_1235598_-	DUF4376 domain-containing protein	X2KRD7	Campylobacter_phage	1.3e-96	100.0
WP_002798141.1\|1235610_1236060_-	hypothetical protein	X2KR34	Campylobacter_phage	4.6e-80	100.0
WP_011049933.1\|1236061_1237627_-	hypothetical protein	X2KLU0	Campylobacter_phage	3.3e-210	100.0
WP_002869967.1\|1237619_1238252_-	hypothetical protein	X2KQ29	Campylobacter_phage	6.0e-110	100.0
WP_002788295.1\|1238248_1238566_-\|head,tail	head-tail adaptor protein	X2KXD7	Campylobacter_phage	9.2e-51	100.0
WP_002788293.1\|1238578_1239016_-\|head,tail	phage gp6-like head-tail connector protein	X2KR38	Campylobacter_phage	1.8e-76	100.0
WP_002788291.1\|1239012_1239264_-	hypothetical protein	X2KLU2	Campylobacter_phage	3.7e-18	100.0
WP_002788288.1\|1239274_1240441_-\|capsid	phage major capsid protein	X2KQ31	Campylobacter_phage	2.8e-214	100.0
WP_002788287.1\|1240457_1241015_-\|head,protease	HK97 family phage prohead protease	X2KXE1	Campylobacter_phage	1.1e-96	100.0
WP_002788286.1\|1241100_1241970_-	hypothetical protein	X2KRE5	Campylobacter_phage	3.9e-168	100.0
WP_019108749.1\|1241982_1247682_-	hypothetical protein	X2KR41	Campylobacter_phage	0.0e+00	100.0
WP_002788283.1\|1247741_1248080_+	hypothetical protein	X2KLU6	Campylobacter_phage	1.6e-56	100.0
WP_002788282.1\|1248071_1248287_-	hypothetical protein	X2KXE3	Campylobacter_phage	2.2e-32	100.0
WP_002788281.1\|1248367_1248724_-	hypothetical protein	X2KRE9	Campylobacter_phage	1.8e-58	100.0
WP_002788279.1\|1248720_1249701_-	hypothetical protein	X2KR44	Campylobacter_phage	3.9e-180	100.0
WP_002869970.1\|1249847_1250072_+	hypothetical protein	X2KLV0	Campylobacter_phage	5.7e-31	100.0
WP_002869971.1\|1250068_1250332_+	type II toxin-antitoxin system RelE/ParE family toxin	X2KQ37	Campylobacter_phage	2.9e-34	100.0
WP_002788276.1\|1250319_1250670_-	hypothetical protein	X2KXE7	Campylobacter_phage	7.3e-57	100.0
WP_002800770.1\|1250670_1251213_-	HK97 gp10 family phage protein	X2KRF4	Campylobacter_phage	5.7e-93	100.0
WP_002788272.1\|1251209_1252382_-\|portal	phage portal protein	X2KR48	Campylobacter_phage	3.1e-216	100.0
WP_002913302.1\|1252541_1252976_-	type II toxin-antitoxin system PemK/MazF family toxin	X2KLV2	Campylobacter_phage	2.4e-78	100.0
WP_002913304.1\|1253030_1254656_-\|terminase	terminase large subunit	X2KQ40	Campylobacter_phage	0.0e+00	100.0
WP_002913306.1\|1254659_1255298_-\|terminase	P27 family phage terminase small subunit	X2KXE9	Campylobacter_phage	1.9e-111	100.0
WP_002869973.1\|1255548_1255899_-	HNH endonuclease	X2KRF8	Campylobacter_phage	1.9e-65	100.0
WP_002788257.1\|1255885_1256176_-	hypothetical protein	X2KM44	Campylobacter_phage	2.6e-15	97.4

DBSCAN-SWA_2

1397555 : 1404191

Tupanvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002857908.1\|1397555_1398221_-	D-glycero-D-manno-heptose 1-phosphate guanosyltransferase	A0A2K9L821	Tupanvirus	4.1e-08	26.6
WP_002857991.1\|1398208_1398814_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	2.2e-16	35.0
WP_002858413.1\|1398801_1399821_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	2.7e-59	40.7
WP_002857889.1\|1399840_1400692_-	FkbM family methyltransferase	NA	NA	NA	NA
WP_002858299.1\|1400710_1401652_-	NAD-dependent epimerase/dehydratase	A0A0F7LC08	uncultured_marine_virus	1.0e-73	46.1
WP_002864205.1\|1401675_1402716_-	GDP-L-fucose synthase	M1HWW2	Paramecium_bursaria_Chlorella_virus	1.7e-69	44.4
WP_002864204.1\|1402715_1403642_-	hypothetical protein	NA	NA	NA	NA
WP_002858190.1\|1403645_1404191_-	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	A0A1D8EQH2	Escherichia_phage	6.1e-18	32.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage