Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_022443 Staphylococcus aureus subsp. aureus SA40, complete sequence 12 crisprs cas3,DEDDh,DinG,csa3,WYL 8 4 10 1

Results visualization

1. NC_022443
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022443_1 634460-634567 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022443_2 751200-751285 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022443_3 928299-928456 Orphan NA
2 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022443_4 1046823-1046915 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022443_5 1131059-1131310 Orphan NA
4 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022443_6 1205687-1205779 Unclear NA
1 spacers
cas3

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022443_7 1413743-1413822 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022443_8 1917556-1917637 Orphan NA
1 spacers
DEDDh

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022443_9 1977326-1977411 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022443_10 2224909-2224993 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022443_11 2379535-2379627 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022443_12 2722029-2722114 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_022443_12 12.1|2722059|26|NC_022443|CRISPRCasFinder 2722059-2722084 26 NC_022443.1 598346-598371 0 1.0
NC_022443_12 12.1|2722059|26|NC_022443|CRISPRCasFinder 2722059-2722084 26 NC_022443.1 1131295-1131320 0 1.0
NC_022443_12 12.1|2722059|26|NC_022443|CRISPRCasFinder 2722059-2722084 26 NC_022443.1 1268329-1268354 0 1.0
NC_022443_3 3.2|928406|19|NC_022443|PILER-CR 928406-928424 19 NC_022443.1 797609-797627 1 0.947
NC_022443_3 3.2|928406|19|NC_022443|PILER-CR 928406-928424 19 NC_022443.1 806778-806796 1 0.947
NC_022443_3 3.2|928406|19|NC_022443|PILER-CR 928406-928424 19 NC_022443.1 1268396-1268414 1 0.947
NC_022443_3 3.2|928406|19|NC_022443|PILER-CR 928406-928424 19 NC_022443.1 1268454-1268472 1 0.947
NC_022443_3 3.2|928406|19|NC_022443|PILER-CR 928406-928424 19 NC_022443.1 1919009-1919027 1 0.947
NC_022443_3 3.2|928406|19|NC_022443|PILER-CR 928406-928424 19 NC_022443.1 2259212-2259230 1 0.947
NC_022443_5 5.1|1131085|30|NC_022443|PILER-CR 1131085-1131114 30 NC_022443.1 806748-806777 1 0.967
NC_022443_5 5.1|1131085|30|NC_022443|PILER-CR 1131085-1131114 30 NC_022443.1 1030629-1030658 1 0.967
NC_022443_5 5.1|1131085|30|NC_022443|PILER-CR 1131085-1131114 30 NC_022443.1 1604558-1604587 1 0.967
NC_022443_5 5.1|1131085|30|NC_022443|PILER-CR 1131085-1131114 30 NC_022443.1 1918979-1919008 1 0.967
NC_022443_5 5.1|1131085|30|NC_022443|PILER-CR 1131085-1131114 30 NC_022443.1 2722095-2722124 1 0.967
NC_022443_5 5.2|1131141|30|NC_022443|PILER-CR 1131141-1131170 30 NC_022443.1 760677-760706 1 0.967
NC_022443_5 5.3|1131197|40|NC_022443|PILER-CR 1131197-1131236 40 NC_022443.1 760677-760716 1 0.975
NC_022443_5 5.4|1131263|30|NC_022443|PILER-CR 1131263-1131292 30 NC_022443.1 806690-806719 1 0.967
NC_022443_10 10.1|2224939|25|NC_022443|CRISPRCasFinder 2224939-2224963 25 NC_022443.1 1813908-1813932 1 0.96
NC_022443_10 10.1|2224939|25|NC_022443|CRISPRCasFinder 2224939-2224963 25 NC_022443.1 2224995-2225019 1 0.96
NC_022443_12 12.1|2722059|26|NC_022443|CRISPRCasFinder 2722059-2722084 26 NC_022443.1 760661-760686 1 0.962
NC_022443_12 12.1|2722059|26|NC_022443|CRISPRCasFinder 2722059-2722084 26 NC_022443.1 760717-760742 1 0.962
NC_022443_12 12.1|2722059|26|NC_022443|CRISPRCasFinder 2722059-2722084 26 NC_022443.1 806654-806679 1 0.962
NC_022443_12 12.1|2722059|26|NC_022443|CRISPRCasFinder 2722059-2722084 26 NC_022443.1 1785062-1785087 1 0.962
NC_022443_12 12.1|2722059|26|NC_022443|CRISPRCasFinder 2722059-2722084 26 NC_022443.1 1967281-1967306 1 0.962
NC_022443_12 12.1|2722059|26|NC_022443|CRISPRCasFinder 2722059-2722084 26 NC_022443.1 2142532-2142557 1 0.962
NC_022443_12 12.1|2722059|26|NC_022443|CRISPRCasFinder 2722059-2722084 26 NC_022443.1 2259270-2259295 1 0.962
NC_022443_2 2.1|751228|30|NC_022443|CRISPRCasFinder 751228-751257 30 NC_022443.1 792264-792293 2 0.933
NC_022443_3 3.2|928406|19|NC_022443|PILER-CR 928406-928424 19 NC_022443.1 165282-165300 2 0.895
NC_022443_3 3.2|928406|19|NC_022443|PILER-CR 928406-928424 19 NC_022443.1 598287-598305 2 0.895
NC_022443_3 3.2|928406|19|NC_022443|PILER-CR 928406-928424 19 NC_022443.1 908117-908135 2 0.895
NC_022443_3 3.2|928406|19|NC_022443|PILER-CR 928406-928424 19 NC_022443.1 1127045-1127063 2 0.895
NC_022443_3 3.2|928406|19|NC_022443|PILER-CR 928406-928424 19 NC_022443.1 1343030-1343048 2 0.895
NC_022443_3 3.2|928406|19|NC_022443|PILER-CR 928406-928424 19 NC_022443.1 1639645-1639663 2 0.895
NC_022443_5 5.1|1131085|30|NC_022443|PILER-CR 1131085-1131114 30 NC_022443.1 797523-797552 2 0.933
NC_022443_5 5.1|1131085|30|NC_022443|PILER-CR 1131085-1131114 30 NC_022443.1 863248-863277 2 0.933
NC_022443_5 5.1|1131085|30|NC_022443|PILER-CR 1131085-1131114 30 NC_022443.1 1127178-1127207 2 0.933
NC_022443_5 5.1|1131085|30|NC_022443|PILER-CR 1131085-1131114 30 NC_022443.1 1619889-1619918 2 0.933
NC_022443_5 5.1|1131085|30|NC_022443|PILER-CR 1131085-1131114 30 NC_022443.1 1917523-1917552 2 0.933
NC_022443_5 5.3|1131197|40|NC_022443|PILER-CR 1131197-1131236 40 NC_022443.1 165242-165281 2 0.95
NC_022443_5 5.3|1131197|40|NC_022443|PILER-CR 1131197-1131236 40 NC_022443.1 598306-598345 2 0.95
NC_022443_5 5.3|1131197|40|NC_022443|PILER-CR 1131197-1131236 40 NC_022443.1 598362-598401 2 0.95
NC_022443_5 5.3|1131197|40|NC_022443|PILER-CR 1131197-1131236 40 NC_022443.1 760733-760772 2 0.95
NC_022443_5 5.3|1131197|40|NC_022443|PILER-CR 1131197-1131236 40 NC_022443.1 806624-806663 2 0.95
NC_022443_5 5.3|1131197|40|NC_022443|PILER-CR 1131197-1131236 40 NC_022443.1 1131311-1131350 2 0.95
NC_022443_5 5.3|1131197|40|NC_022443|PILER-CR 1131197-1131236 40 NC_022443.1 2224964-2225003 2 0.95
NC_022443_5 5.3|1131197|40|NC_022443|PILER-CR 1131197-1131236 40 NC_022443.1 2259286-2259325 2 0.95
NC_022443_12 12.1|2722059|26|NC_022443|CRISPRCasFinder 2722059-2722084 26 NC_022443.1 2063193-2063218 2 0.923
NC_022443_12 12.1|2722059|26|NC_022443|CRISPRCasFinder 2722059-2722084 26 NC_022443.1 2063531-2063556 2 0.923

1. spacer 12.1|2722059|26|NC_022443|CRISPRCasFinder matches to position: 598346-598371, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

2. spacer 12.1|2722059|26|NC_022443|CRISPRCasFinder matches to position: 1131295-1131320, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

3. spacer 12.1|2722059|26|NC_022443|CRISPRCasFinder matches to position: 1268329-1268354, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

4. spacer 3.2|928406|19|NC_022443|PILER-CR matches to position: 797609-797627, mismatch: 1, identity: 0.947

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccacacc	Protospacer
**************** **

5. spacer 3.2|928406|19|NC_022443|PILER-CR matches to position: 806778-806796, mismatch: 1, identity: 0.947

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccacccc	Protospacer
****************.**

6. spacer 3.2|928406|19|NC_022443|PILER-CR matches to position: 1268396-1268414, mismatch: 1, identity: 0.947

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccacacc	Protospacer
**************** **

7. spacer 3.2|928406|19|NC_022443|PILER-CR matches to position: 1268454-1268472, mismatch: 1, identity: 0.947

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccacacc	Protospacer
**************** **

8. spacer 3.2|928406|19|NC_022443|PILER-CR matches to position: 1919009-1919027, mismatch: 1, identity: 0.947

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccacacc	Protospacer
**************** **

9. spacer 3.2|928406|19|NC_022443|PILER-CR matches to position: 2259212-2259230, mismatch: 1, identity: 0.947

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccacacc	Protospacer
**************** **

10. spacer 5.1|1131085|30|NC_022443|PILER-CR matches to position: 806748-806777, mismatch: 1, identity: 0.967

aagctgacgaaaaatcagcttacaataatg	CRISPR spacer
aagctgacgaaaagtcagcttacaataatg	Protospacer
*************.****************

11. spacer 5.1|1131085|30|NC_022443|PILER-CR matches to position: 1030629-1030658, mismatch: 1, identity: 0.967

aagctgacgaaaaatcagcttacaataatg	CRISPR spacer
aagctgacgaaaagtcagcttacaataatg	Protospacer
*************.****************

12. spacer 5.1|1131085|30|NC_022443|PILER-CR matches to position: 1604558-1604587, mismatch: 1, identity: 0.967

aagctgacgaaaaatcagcttacaataatg	CRISPR spacer
aagctgacgaaaagtcagcttacaataatg	Protospacer
*************.****************

13. spacer 5.1|1131085|30|NC_022443|PILER-CR matches to position: 1918979-1919008, mismatch: 1, identity: 0.967

aagctgacgaaaaatcagcttacaataatg	CRISPR spacer
aagctgacgaaaagtcagcttacaataatg	Protospacer
*************.****************

14. spacer 5.1|1131085|30|NC_022443|PILER-CR matches to position: 2722095-2722124, mismatch: 1, identity: 0.967

aagctgacgaaaaatcagcttacaataatg	CRISPR spacer
aagctgacgaaaagtcagcttacaataatg	Protospacer
*************.****************

15. spacer 5.2|1131141|30|NC_022443|PILER-CR matches to position: 760677-760706, mismatch: 1, identity: 0.967

aagctggcagaaagtcagcttacaataacg	CRISPR spacer
aagctggcggaaagtcagcttacaataacg	Protospacer
********.*********************

16. spacer 5.3|1131197|40|NC_022443|PILER-CR matches to position: 760677-760716, mismatch: 1, identity: 0.975

aagctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
aagctggcggaaagtcagcttacaataacgtgcaagttgg	Protospacer
********.*******************************

17. spacer 5.4|1131263|30|NC_022443|PILER-CR matches to position: 806690-806719, mismatch: 1, identity: 0.967

tgaaattggattcccaatttctacaggcaa	CRISPR spacer
tgaaattggattcccaatttctacagacaa	Protospacer
**************************.***

18. spacer 10.1|2224939|25|NC_022443|CRISPRCasFinder matches to position: 1813908-1813932, mismatch: 1, identity: 0.96

tgtcagcttctgtgttggggccccg	CRISPR spacer
tgtcagcttctatgttggggccccg	Protospacer
***********.*************

19. spacer 10.1|2224939|25|NC_022443|CRISPRCasFinder matches to position: 2224995-2225019, mismatch: 1, identity: 0.96

tgtcagcttctgtgttggggccccg	CRISPR spacer
tgtcagcttctatgttggggccccg	Protospacer
***********.*************

20. spacer 12.1|2722059|26|NC_022443|CRISPRCasFinder matches to position: 760661-760686, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

21. spacer 12.1|2722059|26|NC_022443|CRISPRCasFinder matches to position: 760717-760742, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

22. spacer 12.1|2722059|26|NC_022443|CRISPRCasFinder matches to position: 806654-806679, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

23. spacer 12.1|2722059|26|NC_022443|CRISPRCasFinder matches to position: 1785062-1785087, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagctactatgttggggccccg	Protospacer
********* ****************

24. spacer 12.1|2722059|26|NC_022443|CRISPRCasFinder matches to position: 1967281-1967306, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgacagcttctatgttggggccccg	Protospacer
*** **********************

25. spacer 12.1|2722059|26|NC_022443|CRISPRCasFinder matches to position: 2142532-2142557, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

26. spacer 12.1|2722059|26|NC_022443|CRISPRCasFinder matches to position: 2259270-2259295, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

27. spacer 2.1|751228|30|NC_022443|CRISPRCasFinder matches to position: 792264-792293, mismatch: 2, identity: 0.933

cagagaaattggaacgccaatttctacagg	CRISPR spacer
caaagaaattggaacaccaatttctacagg	Protospacer
**.************.**************

28. spacer 3.2|928406|19|NC_022443|PILER-CR matches to position: 165282-165300, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccccacc	Protospacer
************** * **

29. spacer 3.2|928406|19|NC_022443|PILER-CR matches to position: 598287-598305, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctatgttggggcccacacc	Protospacer
**.************* **

30. spacer 3.2|928406|19|NC_022443|PILER-CR matches to position: 908117-908135, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccgcccc	Protospacer
**************.*.**

31. spacer 3.2|928406|19|NC_022443|PILER-CR matches to position: 1127045-1127063, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctatgttggggcccacccc	Protospacer
**.*************.**

32. spacer 3.2|928406|19|NC_022443|PILER-CR matches to position: 1343030-1343048, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggagcccacccc	Protospacer
*********.******.**

33. spacer 3.2|928406|19|NC_022443|PILER-CR matches to position: 1639645-1639663, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggccccatcc	Protospacer
**************  ***

34. spacer 5.1|1131085|30|NC_022443|PILER-CR matches to position: 797523-797552, mismatch: 2, identity: 0.933

aagctgacgaaaaatcagcttacaataatg	CRISPR spacer
aagctgacgaaaagtcagcttacgataatg	Protospacer
*************.*********.******

35. spacer 5.1|1131085|30|NC_022443|PILER-CR matches to position: 863248-863277, mismatch: 2, identity: 0.933

aagctgacgaaaaatcagcttacaataatg	CRISPR spacer
aagctgacgaaaagtcagcttacgataatg	Protospacer
*************.*********.******

36. spacer 5.1|1131085|30|NC_022443|PILER-CR matches to position: 1127178-1127207, mismatch: 2, identity: 0.933

aagctgacgaaaaatcagcttacaataatg	CRISPR spacer
aagctggcgaaaagtcagcttacaataatg	Protospacer
******.******.****************

37. spacer 5.1|1131085|30|NC_022443|PILER-CR matches to position: 1619889-1619918, mismatch: 2, identity: 0.933

aagctgacgaaaaatcagcttacaataatg	CRISPR spacer
aagctggcgaaaagtcagcttacaataatg	Protospacer
******.******.****************

38. spacer 5.1|1131085|30|NC_022443|PILER-CR matches to position: 1917523-1917552, mismatch: 2, identity: 0.933

aagctgacgaaaaatcagcttacaataatg	CRISPR spacer
aagctgacgaaaagtcagcttacgataatg	Protospacer
*************.*********.******

39. spacer 5.3|1131197|40|NC_022443|PILER-CR matches to position: 165242-165281, mismatch: 2, identity: 0.95

aagctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
aagctggcggaaagtcagcttacaataatgtgcaagttgg	Protospacer
********.*******************.***********

40. spacer 5.3|1131197|40|NC_022443|PILER-CR matches to position: 598306-598345, mismatch: 2, identity: 0.95

aagctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
aagctggcggaaagtcagcttacaataatgtgcaagttgg	Protospacer
********.*******************.***********

41. spacer 5.3|1131197|40|NC_022443|PILER-CR matches to position: 598362-598401, mismatch: 2, identity: 0.95

aagctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
aagctggcggaaagtcagcttacaataatgtgcaagttgg	Protospacer
********.*******************.***********

42. spacer 5.3|1131197|40|NC_022443|PILER-CR matches to position: 760733-760772, mismatch: 2, identity: 0.95

aagctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
aagctggcggaaagtcagcttacaataatgtgcaagttgg	Protospacer
********.*******************.***********

43. spacer 5.3|1131197|40|NC_022443|PILER-CR matches to position: 806624-806663, mismatch: 2, identity: 0.95

aagctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
aagctggcggaaagtcagcttacaataatgtgcaagttgg	Protospacer
********.*******************.***********

44. spacer 5.3|1131197|40|NC_022443|PILER-CR matches to position: 1131311-1131350, mismatch: 2, identity: 0.95

aagctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
aagctggcggaaagtcagcttacaataatgtgcaagttgg	Protospacer
********.*******************.***********

45. spacer 5.3|1131197|40|NC_022443|PILER-CR matches to position: 2224964-2225003, mismatch: 2, identity: 0.95

aagctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
aagctgacagaaagtcagcttacaataatgtgcaagttgg	Protospacer
******.*********************.***********

46. spacer 5.3|1131197|40|NC_022443|PILER-CR matches to position: 2259286-2259325, mismatch: 2, identity: 0.95

aagctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
aagctggcggaaagtcagcttacaataatgtgcaagttgg	Protospacer
********.*******************.***********

47. spacer 12.1|2722059|26|NC_022443|CRISPRCasFinder matches to position: 2063193-2063218, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtcttggggccccg	Protospacer
************.* ***********

48. spacer 12.1|2722059|26|NC_022443|CRISPRCasFinder matches to position: 2063531-2063556, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttttgtgttggggccccg	Protospacer
**********.*.*************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_022443_5 5.1|1131085|30|NC_022443|PILER-CR 1131085-1131114 30 MT670422 Pseudomonas phage phiPsa397, complete genome 92792-92821 6 0.8
NC_022443_5 5.1|1131085|30|NC_022443|PILER-CR 1131085-1131114 30 NC_023601 Pseudomonas phage phiPsa374, complete genome 91744-91773 6 0.8
NC_022443_5 5.1|1131085|30|NC_022443|PILER-CR 1131085-1131114 30 MT670421 Pseudomonas phage phiPsa381, complete genome 92566-92595 6 0.8
NC_022443_1 1.1|634499|30|NC_022443|CRISPRCasFinder 634499-634528 30 NZ_CP023312 Vibrio anguillarum strain VIB12 isolate Sea bass plasmid p292, complete sequence 270977-271006 7 0.767
NC_022443_5 5.1|1131085|30|NC_022443|PILER-CR 1131085-1131114 30 LN846932 Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome 10621-10650 7 0.767
NC_022443_2 2.1|751228|30|NC_022443|CRISPRCasFinder 751228-751257 30 KC139649 Salmonella phage FSL SP-069 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, hypothetical proteins, deoxyuridine 5'-triphosphate nucleotidohydrolase, hypothetical proteins, NinH, head morphogenesis protein, hypothetical proteins, capsid related protein, hypothetical proteins, enolase-like protein, hypothetical proteins, tail fiber, hypothetical protein, putative endolysin, hypothetical proteins, and DNA polymerase genes, complete cds 9669-9698 9 0.7
NC_022443_2 2.1|751228|30|NC_022443|CRISPRCasFinder 751228-751257 30 KC139636 Salmonella phage FSL SP-062 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, and hypothetical proteins genes, complete cds 9669-9698 9 0.7
NC_022443_2 2.1|751228|30|NC_022443|CRISPRCasFinder 751228-751257 30 NC_025443 Salmonella phage 9NA, complete genome 7835-7864 9 0.7
NC_022443_8 8.1|1917581|32|NC_022443|CRISPRCasFinder 1917581-1917612 32 NZ_CP024776 Bacillus thuringiensis LM1212 plasmid pLM8, complete sequence 3826-3857 9 0.719
NC_022443_8 8.1|1917581|32|NC_022443|CRISPRCasFinder 1917581-1917612 32 NZ_CP009062 Borreliella afzelii K78 plasmid lp28-1, complete sequence 16532-16563 10 0.688
NC_022443_8 8.1|1917581|32|NC_022443|CRISPRCasFinder 1917581-1917612 32 NZ_CP018749 Borreliella garinii strain CIP 103362 isolate 20047 plasmid lp28-7 15178-15209 10 0.688
NC_022443_8 8.1|1917581|32|NC_022443|CRISPRCasFinder 1917581-1917612 32 NZ_CP028869 Borreliella garinii strain 20047 plasmid lp28-7, complete sequence 11910-11941 10 0.688
NC_022443_8 8.1|1917581|32|NC_022443|CRISPRCasFinder 1917581-1917612 32 NZ_CP028878 Borreliella bavariensis PBi plasmid lp28-7, complete sequence 4741-4772 10 0.688
NC_022443_8 8.1|1917581|32|NC_022443|CRISPRCasFinder 1917581-1917612 32 NZ_CP028879 Borreliella bavariensis PBi plasmid lp28-9, complete sequence 11876-11907 10 0.688
NC_022443_8 8.1|1917581|32|NC_022443|CRISPRCasFinder 1917581-1917612 32 NZ_CP017215 Borreliella burgdorferi strain B331 plasmid B331_lp28_6, complete sequence 11994-12025 10 0.688
NC_022443_8 8.1|1917581|32|NC_022443|CRISPRCasFinder 1917581-1917612 32 NC_018987 Borrelia burgdorferi 297 plasmid 297_lp28-6, complete sequence 12713-12744 15 0.531
NC_022443_8 8.1|1917581|32|NC_022443|CRISPRCasFinder 1917581-1917612 32 NC_017412 Borreliella burgdorferi JD1 plasmid JD1 lp28-7, complete sequence 17252-17283 15 0.531
NC_022443_8 8.1|1917581|32|NC_022443|CRISPRCasFinder 1917581-1917612 32 NC_017419 Borreliella burgdorferi N40 plasmid N40_lp28-2, complete sequence 17030-17061 15 0.531
NC_022443_8 8.1|1917581|32|NC_022443|CRISPRCasFinder 1917581-1917612 32 NC_017408 Borreliella burgdorferi JD1 plasmid JD1 lp28-6, complete sequence 14812-14843 15 0.531
NC_022443_8 8.1|1917581|32|NC_022443|CRISPRCasFinder 1917581-1917612 32 NC_015920 Borreliella bissettii DN127 plasmid lp56, complete sequence 16601-16632 15 0.531
NC_022443_8 8.1|1917581|32|NC_022443|CRISPRCasFinder 1917581-1917612 32 NC_011779 Borreliella burgdorferi ZS7 plasmid ZS7_lp28-2, complete sequence 16934-16965 15 0.531
NC_022443_8 8.1|1917581|32|NC_022443|CRISPRCasFinder 1917581-1917612 32 NC_001852 Borreliella burgdorferi B31 plasmid lp28-2, complete sequence 16891-16922 15 0.531
NC_022443_8 8.1|1917581|32|NC_022443|CRISPRCasFinder 1917581-1917612 32 NZ_CP017219 Borreliella burgdorferi strain B331 plasmid B331_lp56, complete sequence 14876-14907 15 0.531

1. spacer 5.1|1131085|30|NC_022443|PILER-CR matches to MT670422 (Pseudomonas phage phiPsa397, complete genome) position: , mismatch: 6, identity: 0.8

---aagctgacgaaaaatcagcttacaataatg	CRISPR spacer
tgcaggc---cgaaaaatcagcttccaataacg	Protospacer
   *.**   ************** ******.*

2. spacer 5.1|1131085|30|NC_022443|PILER-CR matches to NC_023601 (Pseudomonas phage phiPsa374, complete genome) position: , mismatch: 6, identity: 0.8

---aagctgacgaaaaatcagcttacaataatg	CRISPR spacer
tgcaggc---cgaaaaatcagcttccaataacg	Protospacer
   *.**   ************** ******.*

3. spacer 5.1|1131085|30|NC_022443|PILER-CR matches to MT670421 (Pseudomonas phage phiPsa381, complete genome) position: , mismatch: 6, identity: 0.8

---aagctgacgaaaaatcagcttacaataatg	CRISPR spacer
tgcaggc---cgaaaaatcagcttccaataacg	Protospacer
   *.**   ************** ******.*

4. spacer 1.1|634499|30|NC_022443|CRISPRCasFinder matches to NZ_CP023312 (Vibrio anguillarum strain VIB12 isolate Sea bass plasmid p292, complete sequence) position: , mismatch: 7, identity: 0.767

gttaaagaatacagttggtttgcttgcgca	CRISPR spacer
aagtaagaatacagttgctttgctcgcgcc	Protospacer
.   ************* ******.**** 

5. spacer 5.1|1131085|30|NC_022443|PILER-CR matches to LN846932 (Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome) position: , mismatch: 7, identity: 0.767

aagctgacgaaaaatcagcttacaataatg	CRISPR spacer
atgaagacgaaaaatcagattacgataaat	Protospacer
* *  ************* ****.****  

6. spacer 2.1|751228|30|NC_022443|CRISPRCasFinder matches to KC139649 (Salmonella phage FSL SP-069 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, hypothetical proteins, deoxyuridine 5'-triphosphate nucleotidohydrolase, hypothetical proteins, NinH, head morphogenesis protein, hypothetical proteins, capsid related protein, hypothetical proteins, enolase-like protein, hypothetical proteins, tail fiber, hypothetical protein, putative endolysin, hypothetical proteins, and DNA polymerase genes, complete cds) position: , mismatch: 9, identity: 0.7

cagagaaattggaacgccaatttctacagg	CRISPR spacer
agctttaattggtacgccaatttctacatc	Protospacer
 .    ****** ***************  

7. spacer 2.1|751228|30|NC_022443|CRISPRCasFinder matches to KC139636 (Salmonella phage FSL SP-062 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, and hypothetical proteins genes, complete cds) position: , mismatch: 9, identity: 0.7

cagagaaattggaacgccaatttctacagg	CRISPR spacer
agctttaattggtacgccaatttctacatc	Protospacer
 .    ****** ***************  

8. spacer 2.1|751228|30|NC_022443|CRISPRCasFinder matches to NC_025443 (Salmonella phage 9NA, complete genome) position: , mismatch: 9, identity: 0.7

cagagaaattggaacgccaatttctacagg	CRISPR spacer
agctttaattggtacgccaatttctacatc	Protospacer
 .    ****** ***************  

9. spacer 8.1|1917581|32|NC_022443|CRISPRCasFinder matches to NZ_CP024776 (Bacillus thuringiensis LM1212 plasmid pLM8, complete sequence) position: , mismatch: 9, identity: 0.719

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
caaattaggatttcttttttcgaaatccttga	Protospacer
     ***.*****************.**. *

10. spacer 8.1|1917581|32|NC_022443|CRISPRCasFinder matches to NZ_CP009062 (Borreliella afzelii K78 plasmid lp28-1, complete sequence) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggaaatagaatttgttttttagaaattcttgt	Protospacer
.   .******** ****** ********.  

11. spacer 8.1|1917581|32|NC_022443|CRISPRCasFinder matches to NZ_CP018749 (Borreliella garinii strain CIP 103362 isolate 20047 plasmid lp28-7) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggaaatagaatttgttttttagaaattcttgt	Protospacer
.   .******** ****** ********.  

12. spacer 8.1|1917581|32|NC_022443|CRISPRCasFinder matches to NZ_CP028869 (Borreliella garinii strain 20047 plasmid lp28-7, complete sequence) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggaaatagaatttgttttttagaaattcttgt	Protospacer
.   .******** ****** ********.  

13. spacer 8.1|1917581|32|NC_022443|CRISPRCasFinder matches to NZ_CP028878 (Borreliella bavariensis PBi plasmid lp28-7, complete sequence) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggaaatagaatttgttttttagaaattcttgt	Protospacer
.   .******** ****** ********.  

14. spacer 8.1|1917581|32|NC_022443|CRISPRCasFinder matches to NZ_CP028879 (Borreliella bavariensis PBi plasmid lp28-9, complete sequence) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggaaatagaatttgttttttagaaattcttgt	Protospacer
.   .******** ****** ********.  

15. spacer 8.1|1917581|32|NC_022443|CRISPRCasFinder matches to NZ_CP017215 (Borreliella burgdorferi strain B331 plasmid B331_lp28_6, complete sequence) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggcaacagaatttgttttttagaaattcttgt	Protospacer
. * ..******* ****** ********.  

16. spacer 8.1|1917581|32|NC_022443|CRISPRCasFinder matches to NC_018987 (Borrelia burgdorferi 297 plasmid 297_lp28-6, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

17. spacer 8.1|1917581|32|NC_022443|CRISPRCasFinder matches to NC_017412 (Borreliella burgdorferi JD1 plasmid JD1 lp28-7, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

18. spacer 8.1|1917581|32|NC_022443|CRISPRCasFinder matches to NC_017419 (Borreliella burgdorferi N40 plasmid N40_lp28-2, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

19. spacer 8.1|1917581|32|NC_022443|CRISPRCasFinder matches to NC_017408 (Borreliella burgdorferi JD1 plasmid JD1 lp28-6, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

20. spacer 8.1|1917581|32|NC_022443|CRISPRCasFinder matches to NC_015920 (Borreliella bissettii DN127 plasmid lp56, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

21. spacer 8.1|1917581|32|NC_022443|CRISPRCasFinder matches to NC_011779 (Borreliella burgdorferi ZS7 plasmid ZS7_lp28-2, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

22. spacer 8.1|1917581|32|NC_022443|CRISPRCasFinder matches to NC_001852 (Borreliella burgdorferi B31 plasmid lp28-2, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

23. spacer 8.1|1917581|32|NC_022443|CRISPRCasFinder matches to NZ_CP017219 (Borreliella burgdorferi strain B331 plasmid B331_lp56, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 729550 : 737370 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 749351 : 763861 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 844348 : 865850 33 Staphylococcus_phage(77.78%) terminase,integrase,coat attL 842655:842676|attR 863318:863339
DBSCAN-SWA_4 954119 : 997838 38 Streptococcus_phage(33.33%) bacteriocin,protease,tRNA,transposase NA
DBSCAN-SWA_5 1032051 : 1040524 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 1298491 : 1303441 9 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_7 1575932 : 1584244 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_8 1654887 : 1663930 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_9 1800990 : 1835704 39 Staphylococcus_phage(93.55%) protease NA
DBSCAN-SWA_10 1841257 : 1848854 8 Staphylococcus_phage(62.5%) transposase NA
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NC_022443.1|WP_000384172.1|1815187_1815412_-|hypothetical-protein 1815187_1815412_- 74 aa aa NA NA NA 1800990-1835704 yes