CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009054	Lactococcus lactis subsp. lactis NCDO 2118 chromosome, complete genome	1 crisprs	cas3,DEDDh,csa3,DinG	0	0	11	0
NZ_CP009055	Lactococcus lactis subsp. lactis NCDO 2118 plasmid pNCDO2118, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009054_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009054_1

1511856-1511970

Orphan

Consensus_repeat	Method
CTGACAATTCTTTTAGCTATCCATAAAATGCTCGCTTTGGTCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009054_1

>merge|NZ_CP009054|1|1511856-1511970|CRISPRCasFinder
CTGACAATTCTTTTAGCTATCCATAAAATGCTCGCTTTGGTCGCTAACGAACGAGAGAATTATCAGCTCCGCTGACAATTCTTTTAGCTATCGATAAAATGCTCGCTTTGGTCGC

>NZ_CP009054|1|1|1511856-1511970|CRISPRCasFinder
CTGACAATTCTTTTAGCTATCCATAAAATGCTCGCTTTGGTCGC	TAACGAACGAGAGAATTATCAGCTCCG
CTGACAATTCTTTTAGCTATCGATAAAATGCTCGCTTTGGTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009054.1\|WP_012897963.1\|1511091_1511805_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
NZ_CP009054.1\|WP_012897970.1\|1518506_1519343_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP009054.1\|WP_003131084.1\|1503791_1504970_-\|toxic-anion-resistance-protein	unknown	unknown	gnl\|CDD\|377557
NZ_CP009054.1\|WP_003131089.1\|1508416_1508947_+\|heptaprenyl-diphosphate-synthase-subunit-I	unknown	unknown	gnl\|CDD\|227110
NZ_CP009054.1\|WP_012897959.1\|1507000_1507942_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NZ_CP009054.1\|WP_003131091.1\|1509893_1510610_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|223434
NZ_CP009054.1\|WP_012897964.1\|1512025_1512961_-\|dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235982
NZ_CP009054.1\|WP_038603869.1\|1519342_1520254_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP009054.1\|WP_012897960.1\|1508012_1508420_+\|NusG-domain-II-containing-protein	unknown	unknown	gnl\|CDD\|227646
NZ_CP009054.1\|WP_012897973.1\|1521761_1522688_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381624
NZ_CP009054.1\|WP_012897967.1\|1515747_1516464_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP009054.1\|WP_012897968.1\|1516535_1517963_-\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NZ_CP009054.1\|WP_012897965.1\|1513033_1513822_-\|dihydroorotate-dehydrogenase-electron-transfer-subunit	unknown	unknown	gnl\|CDD\|99814
NZ_CP009054.1\|WP_012897961.1\|1508937_1509897_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_CP009054.1\|WP_038603488.1\|1502470_1503619_-\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl\|CDD\|224733
NZ_CP009054.1\|WP_010905895.1\|1505114_1505741_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227252
NZ_CP009054.1\|WP_012897966.1\|1514220_1515585_-\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|341046
NZ_CP009054.1\|WP_012897958.1\|1505932_1506958_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629
NZ_CP009054.1\|WP_012897972.1\|1520327_1521647_-\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567
NZ_CP009054.1\|WP_012897969.1\|1517955_1518510_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274398

Protein	Function_ID	Function_description	E-value
NZ_CP009054.1\|WP_012897963.1\|1511091_1511805_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	9.35831e-135
NZ_CP009054.1\|WP_012897970.1\|1518506_1519343_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.52096e-59
NZ_CP009054.1\|WP_003131084.1\|1503791_1504970_-\|toxic-anion-resistance-protein	gnl\|CDD\|377557	pfam05816, TelA, Toxic anion resistance protein (TelA). This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance and plasmid fertility inhibition.	2.06226e-124
NZ_CP009054.1\|WP_003131089.1\|1508416_1508947_+\|heptaprenyl-diphosphate-synthase-subunit-I	gnl\|CDD\|227110	COG4769, COG4769, Predicted membrane protein [Function unknown].	1.74231e-64
NZ_CP009054.1\|WP_012897959.1\|1507000_1507942_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	4.29994e-173
NZ_CP009054.1\|WP_003131091.1\|1509893_1510610_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|223434	COG0357, GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane].	2.20408e-85
NZ_CP009054.1\|WP_012897964.1\|1512025_1512961_-\|dihydroorotate-dehydrogenase	gnl\|CDD\|235982	PRK07259, PRK07259, dihydroorotate dehydrogenase.	0
NZ_CP009054.1\|WP_038603869.1\|1519342_1520254_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.84861e-70
NZ_CP009054.1\|WP_012897960.1\|1508012_1508420_+\|NusG-domain-II-containing-protein	gnl\|CDD\|227646	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown].	7.84966e-52
NZ_CP009054.1\|WP_012897973.1\|1521761_1522688_-\|hypothetical-protein	gnl\|CDD\|381624	cd19606, GH113-like, Glycoside hydrolase family 113 beta-mannosidase and similar proteins. Family 113 glycoside hydrolases cleave (1->4)-beta-glycosidic linkages, such as endo-1,4-beta-mannanase. This family also includes TIM-barrel domains found in gene transfer agent proteins.	1.05227e-94
NZ_CP009054.1\|WP_012897967.1\|1515747_1516464_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	2.82476e-68
NZ_CP009054.1\|WP_012897968.1\|1516535_1517963_-\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
NZ_CP009054.1\|WP_012897965.1\|1513033_1513822_-\|dihydroorotate-dehydrogenase-electron-transfer-subunit	gnl\|CDD\|99814	cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.	1.30532e-108
NZ_CP009054.1\|WP_012897961.1\|1508937_1509897_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	5.93919e-83
NZ_CP009054.1\|WP_038603488.1\|1502470_1503619_-\|N-acetylglucosamine-6-phosphate-deacetylase	gnl\|CDD\|224733	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism].	7.56772e-179
NZ_CP009054.1\|WP_010905895.1\|1505114_1505741_-\|hypothetical-protein	gnl\|CDD\|227252	COG4915, XpaC, 5-bromo-4-chloroindolyl phosphate hydrolysis protein [General function prediction only].	2.19745e-89
NZ_CP009054.1\|WP_012897966.1\|1514220_1515585_-\|multidrug-efflux-MFS-transporter	gnl\|CDD\|341046	cd17503, MFS_LmrB_MDR_like, Bacillus subtilis lincomycin resistance protein (LmrB) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including Bacillus subtilis lincomycin resistance protein LmrB, and several proteins from Escherichia coli such as the putative MDR transporters EmrB, MdtD, and YieQ. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.2855e-65
NZ_CP009054.1\|WP_012897958.1\|1505932_1506958_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	6.01706e-180
NZ_CP009054.1\|WP_012897972.1\|1520327_1521647_-\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	1.9671e-32
NZ_CP009054.1\|WP_012897969.1\|1517955_1518510_-\|hypothetical-protein	gnl\|CDD\|274398	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP), E. coli WcaJ, Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes, such as Sinorhizobium ExoY and Lactococcus EpsD, lack the N-terminal domain and are not found by this model.	0.008284

>NZ_CP009054.1|WP_012897963.1|1511091_1511805_-|orotidine-5'-phosphate-decarboxylase
MQENRPVIALDFPEFSDVKDFLEKFDPSEQLYIKLGMELFYTAGPQVVYYVKSLGHSVFLDLKLHDIPNTVESSMRVLARLGVDMVNVHAAGGVEMMVAAKRGLEAGTPVGRQRPKLIAVTQLTSTSEEIMQNDQKIMTSLEESVINYAQKTAQAGLDGVVCSAHEVEKIKAATSKEFICLTPGIRPEGASKGDQKRVMTPKEARTIGSDYIVVGRPITQAKDPVASYHAIKAEWNQ
>NZ_CP009054.1|WP_003131091.1|1509893_1510610_+|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MTPDEFLSALTEFDIQLSDKQIKQFERYFELLVEWNEKINLTAITEKNEVYLKHFYDSIAPILYGLITDQPVSILDIGAGAGFPSLPMKIIFPELKVTIIDSLNKRINFLSLLTEELGLENVTLLHGRAEDFGQDANYRGTFDFVTARAVARLSVLTEFTIPFLKKNGILLSLKAAQFEEELNDAKKAIATLGGKFIKEVAYELPNGDERHIALIEKKKETPKKYPRKAGTPAKNPIK
>NZ_CP009054.1|WP_012897961.1|1508937_1509897_+|polyprenyl-synthetase-family-protein
MDLKNNFWKDYPELEKELVQVQQLMKSHVTIKNSDVKSAIFDIFDAGGKMLRPAYLLLFSGFTVLSENERLALAASVEMMHIATLVHDDVIDHADTRRGVATLSAKYGPEIAVYAGDYLFIAVFRLMSEHSLELSNLTKNIGSIERLLGGELGQLNHHFNLQQTLDDYIENISGKTGELFALSASVAPLISKNNTLTKRAYKIGMNIGISFQIMDDYLDYASTAQTLGKPVLEDIKQGIYSAPVLFALQENNALVSELIKNEKFDEVYDFIKTSDALEKTKALAKSYTLSALNLIDKLPKGKNRELIAEITRKLLERTL
>NZ_CP009054.1|WP_003131089.1|1508416_1508947_+|heptaprenyl-diphosphate-synthase-subunit-I
MNIKEYVYVSLLTAAAVVMGIIESSLPPFFAFAPGAKVGLANLVMIIAVFTLRWRQVWVMQILRLLITALFTGFSVFLYSFAGGILSLLAMYLMKQFGPKLVSMIGISTVGGFFHNFGQLAMASLLAKTTSVMLYLPWLAFFGILAGFAIGIAGNQLITRVKPIQELFIKESKQWT
>NZ_CP009054.1|WP_012897960.1|1508012_1508420_+|NusG-domain-II-containing-protein
MNFFKNTVNFFKSIKTKPLDFVIIFLLFIASFSTLFFFATGSKGAQAELRISGKVIKTFDLNKNQTWTYRDKDGDYNKIQVKNGEIAVVEANCKDQIDVQRGYISKTGETIVCLPHNLVIEVMSGQKDEQVDYKV
>NZ_CP009054.1|WP_012897959.1|1507000_1507942_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MKQSTIPTKARKVRKAVIPAAGLGTRFLPATKAIAKEMLPIVDKPTIQFIVEEALKSGIEDILIVTGKAKRPIEDHFDSNIELEQNLLEKGKTELLKLVEETTDINLHFIRQSHPKGLGHAVLQAKAFVGNEPFVVMLGDDLMNITGNETPLTKDLINDYEKTHASTIAVMKVPHDDVDKYGVIDPNGEVSKGLYNVERFVEKPNVDEAPSDLAIIGRYLLTPEIFDVLETQVPGAGNEIQLTDAIERLNKTQRVFAHEFTGKRYDVGDKLGFVETTIEYGLEHPQIGANLKNYIIEKAKELSKDDSKNITKK
>NZ_CP009054.1|WP_012897958.1|1505932_1506958_+|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MNPQKIAVLGPGSWGTALSQVLNDNGHEVRIWGNNPEQMAEINEKHTNTRYFKDVVLDEKIKAFDRLDLALEDVDAILFVVPTKVTRLVAKQVAEVLKHKVHILHASKGLEQGTHERISTILEEEIPAQLRGEIVVVSGPSHAEETIVRDITLISAASKDHDEAKYAQAIFSNDYFRLYTNTDVVGVETAGALKNIIAVGAGALHGLGFGDNAKAAIITRGLAEITRLGVAMGAEPLTYSGLSGVGDLIVTGTSIHSRNWRAGDALGRGEKLADIEKNMGMVIEGVSTTKAAFELAQQLDIDMPITETIYKVLYENLDAKTGILDIMRRETRAENEFINNK
>NZ_CP009054.1|WP_010905895.1|1505114_1505741_-|hypothetical-protein
MPVSLFMNHQDMMFGYGHLGIVNVIFGLVLFFLIIKMIIGISFMRKNPDEREEGYKDKGMSKKENIERYHEAGLSDTDIKIFRENLSEAKENIKTWEKLLKKEDDLQVVESVTGGLEASKQTFKYIVQNPQELTKQNEFLYKDLPNMVKLSEKFIEMKKQSVRTEEINRDLDETLLLIKTLSHSISKNYHEILMDDVNVIKHQVDFDK
>NZ_CP009054.1|WP_003131084.1|1503791_1504970_-|toxic-anion-resistance-protein
MDNPILDDLMTNDKVIKEAEQLDEQQKSEIVKMHEKASLAAVEVLSTEELEKAKELSKQLDESSAQSVINYGASAQDKISAFSQSVLNKVQAQDLGEVGSSLTDLMFNLQQANPNELVAENKGIFTKMFGKVKRSIFEVTQKYQKIGAGIDKISAKLNNEQQGLLQDNEMLDKLYDENLNYFKALNVYIAGAELKVQELDTEIIPQARKEAQDSTDNALIVQKVNDLESYKNRLEKRAHDLRLARQLTIQQAPQIRLIQNTNQELAEKIQTSINTAIPLWKNQVAIALTLLKQKDALTSQRIVSETTNDLLRKNSEMLKASTIEAATENERGLVDIETLKLTQQNLVDTIQETMRIQAEGRQKRQQGEVELSKMEEEIKEKLLQLSNNKQLN
>NZ_CP009054.1|WP_038603488.1|1502470_1503619_-|N-acetylglucosamine-6-phosphate-deacetylase
MTYYIKADQFFYAYETKKGGFLEITDGKFGEWTEEAPAGADILDYSGQSIAPGLVETHIHGFGGADAQDAEVEGIMGTMSEGLLSAGVTSFLPSPLTDDHEGLKAVCTVVGEHYQEARGAKVRGIFFEGPFFTEEKKGAQNPKYMRDAKMWELEDWQEAAHGMLKKIGLAPERDGSEDFIRKATESGVVIALGHSNATYKQAVAGVQAGASVWVHTFNGMSGMTHQEPGMVGAILNTPNTYAELICDGHHVRPEAAEIVMKMKGADHVVLITDSMRAAGLPDGPYMLGEYEVEVRDGAAWLPTGRPAASILTLKTAVKNVIDWGIATPAEAIMMASLTPAKSVNIDDVCGQIKPGFSADFIVLDNDFDLVATYLDGEKRYEA
>NZ_CP009054.1|WP_012897964.1|1512025_1512961_-|dihydroorotate-dehydrogenase
MTENNRLSVKLPGLDLKNPIIPASGCFGFGEEYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGLQNPGLEVIMAEKLPWLNENFPDLPIIANVAGSEEDDYVAVCAKIGDAPNVKAIELNISCPNVKHGGQAFGTDPDVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRKPVLANITGGLSGPAIKPVALKLIHQVAQVVDIPIIGMGGVESAQDVLEMYMAGASAVAVGTANFADPFVCPKIIEKLPEVMDQYGIDSLENLIQEVKNSKK
>NZ_CP009054.1|WP_012897965.1|1513033_1513822_-|dihydroorotate-dehydrogenase-electron-transfer-subunit
MPKLQEMMTIVSQREVASNIFEMVLKGELVEEMDLPGQFLHLAVPNANMLLRRPISISSWDKVAKTCTILYRIGDETSGTYEISKLQTGAKIDVMGPLGNGFPVDEVVSTDKILIVGGGIGVPPLYELAKQLEEKNCQMTILLGFASEKVKILEKEFAELKNVSLKIATDDGSYGTKGHVGMLMEEVDFEVDALYTCGAPAMLKAVAKKYDQLERLYISMESRMACGIGACYACVEHDKEDENHALKVCEDGPVFLGKQLSL
>NZ_CP009054.1|WP_012897966.1|1514220_1515585_-|multidrug-efflux-MFS-transporter
MNKNNHFHLLGAVIATGILSFSGVLIETAMNVTFPTLINEFGLSTSKIQWVTTIYLLVIAITIPLSSYFNERFSARKLFLVANLIFLVGVLTNCFSPNFAMLLFGRLLQGVGTGIGLPLMFHLILTKAPLHKRGMMMGIGTLTTSIAPAIGPTYGGIISNSLDWRYIYIFLLPLVVISLVLGLACLPREGAKTPKKLALRPVIALSIMFFAFISALSAEHLMTFALLFIVGLVGAFLFVQFNRKESLIDLGILKNHRFVALIFSLLVYQALLLGLSFVLPSFIQVSAGFSSSVAGLFMFPGALIGAVLAPISGKVLDQIGARKPITTGLILATLGLALLFVFLPTKSLALLLVAHIVLMLGLGISYSNLMTCSLSTLATDQLSDGNALVNTLQQFIGAVATAVVATTLSIFQGLNGFKVGTSHGTSIILALFFILIIVSLIVSFPNLKKIRANH
>NZ_CP009054.1|WP_012897967.1|1515747_1516464_-|GntR-family-transcriptional-regulator
MNKYAKIRNDVRNKIISGKYKPGTLLPKESEMIMKYSASKLTIKKAMDELVNEGLIVKRRGSGTFVKGLSTEDIEKLKVVNQFQGSSAFFADKVVESRILVFEVVKSEPEIMERLGLSEVSDLYHVVRTRLIDGEPYVIESTYMPVDLIKNLTFEICSGSIYEYIEDELGLTIGSAHRRIEARKGTDEELTELGGEFGDPIVLVSQVGYLSDGRTFEFSTNVHRYDKYAFETVLMHKN
>NZ_CP009054.1|WP_012897968.1|1516535_1517963_-|glycoside-hydrolase-family-1-protein
MTKLIFPKEFWWGAATSGPQTEGRFKKKAANIFDYDFEKFPEHFWQGIGPDMASNFYNDFREDIKLMKKAGLNSVRTSIQWSRLIDDLEEGTVNQDAVDFYNAVIDEFIANGIRPVINLHHFDLPVDLLHKYGGWTNKHVITLYVKFAEQCFKLFSDRVSDWFTHNEPMVVVEGGYLYQFHYPDLVDGKLAVQVAYNLQLASSLAIQKFHEINQNPNGKIGIVLNLSPNYPASEDKKDIAAAHIADLWQNQLFMDASVKGEFPKELVEILTKDKVIWQSTKEELAIIKNNKVDRLGVNYYHPNRAQKPYYSPDSLAIDWLPNKYFANYQMLGARMNVDKGWEIYPRALYEIAKNIQENYDNIPWFVSECGMGVSNEERYLNEEGQIDDDYRIQFIQEHLYWLHQAIEEGSSCFGFHLWTPIDCFSWRNSYRNRYGLISVNIHTQEKTLKKSAYYFKNLAEHSVLELSEEFFDKFN
>NZ_CP009054.1|WP_012897969.1|1517955_1518510_-|hypothetical-protein
MKVSGFIWFVQQVYMIIIASLMFWLNFLLGFVFLGTTFSFKRTFAYIEGTYYDKYHERTKEVKLKFEWSNLILLFTVGVFILASHFPLSNLSTFLILVSLAYFVLTLIYIIFKTYYRLEKFTDVMQKLMRNWTMAIYSLMLIILAIFLTGFNRVWFLFFIPGLFCKMIDISFKHLDKKKVKIND
>NZ_CP009054.1|WP_012897970.1|1518506_1519343_-|carbohydrate-ABC-transporter-permease
MNKTNKKVFHIGDVLKYIPLVLAAIVAVLPLLVVFIGSFKSMTEFTNSGVLTLPKHFSIDNYTKAFTEGNMLTGFKNTVIIFVVSMVGQLLISSSFAYVMNRFEFRLKRLILALFTIAMLIPAITSQVAVFQLVNKLGLVGTRWSVIILYIGTNVIALYIFLQFLQEIPYSLDESALLDGASYFRIFWSIILPNLKAPIVTMVIISGVGVYNDFYNPYLYMPDPSLQVISTALFAFKGSSVVQWPVILAGVMIVIIPILIVFIVLQKYIYNGVTGAVK
>NZ_CP009054.1|WP_038603869.1|1519342_1520254_-|sugar-ABC-transporter-permease
MLEVLILSKLSQKAQKRLIIFSFTIVPIVLLLMFSYYPLVKMVQYSLTDWNGISPSSNYVGFANYEKVFSNPNYFGVFKTSLYYFLSSFPQLGLALLFATILSFKVKFTNFWKGILFFPYLLNGVAIGFMFLYFYKTGGTLDSLLHLFGIHHLPLWLGNQSINNISLSFVSIWRYMGFNFLIFLGAIQSVDPEIYEAAEIDGANRWNQFRYIIIPAIRNILFLNIILSVSGSLSVFEVPYIMTGGANGTMTFVIQTVQTAFNYNQVGLASAMAVILLIIVVLVSAAQFILTQDRSDAKKKAGA
>NZ_CP009054.1|WP_012897972.1|1520327_1521647_-|carbohydrate-ABC-transporter-substrate-binding-protein
MKKRYIFGSLAITGLAALTLAACGSKTSSSGTGKNIKATITFVNQKTDMHSNGMWKKYIAEFNKEYPNITIKEQALNNYDQTEQTRMSSKNFGDVVAIPAAVAPKDYPNFFSSLGKTKDLEKKYTSLQDRTYKGEQYGLPSEVNANGFVVNWNVFKKAGIDKWPTTTDEFIQDLKTIKAKLPDVTPLYTNYACGWALVDWDFQRSSVAGDPNFDLALAKTDRPFTVGQPMYTIYNTLYTAAKDGLINHDPTTDDWNTSVSQMAKNKVAVMMLATWAVPQVQSQMSSNKDAINVEPFPQTAPDGKTYMLVGGDYNWGVNKNSKNQEAAKDWVNWLVDKSDFAKDNGGMTAMKNQPYPTDLNDAKKNGVVFFEAGSTPADKADLFSNINNGSQVGIGTTQTVKQQIIDSGVGSSKKSFASIMDGLNTAWSQNVKQYNPDKK
>NZ_CP009054.1|WP_012897973.1|1521761_1522688_-|hypothetical-protein
MKAIKAASFGYYAKSGELNNDYAQWSMKTLKERTNINTIVLTIVAEQANAHATSINWQTMPPKDEEVKATIRYAQSLGLDVILKPMINCTDGTWRAYINFFDIDVVCEPKWSDWFAVYTEFQLHYAKIAQECEATMFVVGCELVSSDHREKEWRKLIDDVREIYKGLITYNCDKYQENHLTWWDAVDVISSSGYYPFDQWDKELRRIEKVIKKYDKPFFFCEAGAPSIDGGDLLPNDWTIKGEVNLEAQTRYYKGMLTACAKVDFVLGFGLWDWKAQVYSEDQARFDKDYAFYNKPAEKLIKDYYDKP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

210091 : 217853

Catovirus(33.33%)

holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012897045.1\|210091_210928_+\|holin	phosphorylcholine transferase LicD	A0A1V0SAS8	Catovirus	1.3e-06	31.6
WP_012897046.1\|210917_211919_+	glycosyltransferase	A0A1V0SAH6	Catovirus	6.6e-10	32.6
WP_012897047.1\|211920_212808_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_012897048.1\|212804_214031_+	glycerophosphoryl diester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	4.0e-33	37.6
WP_012897049.1\|214041_214479_+	glycerol-3-phosphate cytidylyltransferase	A0A221SAS8	Streptomyces_phage	4.3e-14	39.3
WP_012897050.1\|214605_215988_-	family 25 glycosyl hydrolase	Q71JA9	Lactobacillus_phage	1.6e-09	31.6
WP_003129822.1\|216371_217853_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.1e-97	41.3

DBSCAN-SWA_2

269038 : 276092

Lactococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012897089.1\|269038_271282_+	anaerobic ribonucleoside-triphosphate reductase	A0A0C5KKX3	Enterococcus_phage	2.0e-272	63.0
WP_003131196.1\|271284_271884_+	anaerobic ribonucleoside-triphosphate reductase activating protein	A0A0C5K925	Enterococcus_phage	2.1e-51	55.3
WP_012897090.1\|271992_272499_-	DUF2325 domain-containing protein	NA	NA	NA	NA
WP_038603099.1\|272789_274079_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	9.7e-123	56.4
WP_012897092.1\|275080_275281_+	hypothetical protein	Q9AZK6	Lactococcus_phage	3.3e-06	55.8
WP_012897093.1\|275411_275612_+	cold shock domain-containing protein	Q9AZD3	Lactococcus_phage	6.3e-13	50.8
WP_011835124.1\|275891_276092_+	cold-shock protein	Q9AZD3	Lactococcus_phage	2.4e-28	93.9

DBSCAN-SWA_3

439756 : 451888

Streptococcus_phage(40.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003131595.1\|439756_440074_+	thioredoxin family protein	A0A0K2FIM3	Achromobacter_phage	4.5e-05	30.4
WP_012897224.1\|440159_440786_+\|tRNA	DUF4479 and tRNA-binding domain-containing protein	NA	NA	NA	NA
WP_038603144.1\|440948_442289_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_012897226.1\|442379_442769_+	single-stranded DNA-binding protein	A0A0K0MWE1	Streptococcus_phage	1.1e-24	45.8
WP_003131589.1\|442888_443173_+	co-chaperone GroES	A0A221S386	uncultured_virus	3.1e-13	44.1
WP_012897227.1\|443260_444889_+	chaperonin GroEL	A0A219YK78	uncultured_virus	1.3e-156	56.8
WP_012897228.1\|444934_445747_-	MBL fold metallo-hydrolase	A0A0C5AJ83	Bacteriophage	4.1e-34	38.1
WP_012897229.1\|445917_447360_-	cell wall metabolism sensor histidine kinase WalK	W8CYF6	Bacillus_phage	1.4e-32	33.0
WP_003131580.1\|447352_448054_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.2e-42	39.7
WP_012897230.1\|448231_448867_+	dTMP kinase	M1PSC7	Streptococcus_phage	5.4e-74	65.0
WP_012897231.1\|448999_449860_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	4.3e-66	44.8
WP_038603148.1\|449911_450694_+	stage 0 sporulation family protein	NA	NA	NA	NA
WP_011675472.1\|450686_451013_+	DNA replication initiation control protein YabA	NA	NA	NA	NA
WP_012897233.1\|451012_451888_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	6.6e-99	65.4

DBSCAN-SWA_4

995916 : 1036870

Lactococcus_phage(86.96%)

head,integrase,terminase,tail,holin,capsid,protease,portal

attL 989947:989963|attR 1014167:1014183

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
989947:989963	attL	NA	NA	NA	NA
WP_038603258.1\|995916_997059_-\|integrase	site-specific integrase	A0A059NT56	Lactococcus_phage	1.8e-189	91.8
WP_038603260.1\|998109_999165_-	endonuclease	A0A1S5SAB0	Streptococcus_phage	2.2e-120	61.1
WP_038603262.1\|999245_999680_-	hypothetical protein	NA	NA	NA	NA
WP_038603264.1\|999689_1000025_-	helix-turn-helix transcriptional regulator	Q9AZF5	Lactococcus_phage	2.7e-24	52.7
WP_038603266.1\|1000317_1000509_+	antirepressor	Q9AZF4	Lactococcus_phage	1.6e-26	95.2
WP_038603268.1\|1000525_1000771_+	hypothetical protein	NA	NA	NA	NA
WP_038603270.1\|1000762_1001092_-	hypothetical protein	NA	NA	NA	NA
WP_038603272.1\|1001191_1001905_+	antirepressor	A0A059NT90	Lactococcus_phage	3.6e-127	97.0
WP_011834775.1\|1001917_1002154_+	helix-turn-helix domain-containing protein	A0A059NT59	Lactococcus_phage	4.3e-37	100.0
WP_144242115.1\|1002273_1002492_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012898043.1\|1002796_1003033_+	DUF1408 domain-containing protein	Q9MC36	Lactococcus_phage	8.7e-38	96.2
WP_051880121.1\|1003138_1004005_+	hypothetical protein	A0A286QQK1	Streptococcus_phage	1.3e-41	42.3
WP_038603838.1\|1004033_1005074_+	DUF1351 domain-containing protein	A5GZ46	Lactococcus_phage	6.6e-162	96.0
WP_080716014.1\|1005316_1006162_+	DnaD domain protein	A5GZ47	Lactococcus_phage	1.6e-65	61.6
WP_038603278.1\|1006154_1006397_+	hypothetical protein	A5GZ49	Lactococcus_phage	3.1e-38	92.5
WP_038603280.1\|1006405_1006825_+	RusA family crossover junction endodeoxyribonuclease	A7DYE2	Streptococcus_phage	4.0e-17	38.7
WP_038603286.1\|1007071_1007434_+	DUF658 family protein	A0A1P8BLN7	Lactococcus_phage	3.4e-57	96.7
WP_038603288.1\|1007444_1007696_+	hypothetical protein	A0A1P8BLV4	Lactococcus_phage	1.7e-31	84.3
WP_038603290.1\|1007855_1008065_+	hypothetical protein	NA	NA	NA	NA
WP_038603292.1\|1008061_1008700_+	DUF1642 domain-containing protein	Q9AYU5	Lactococcus_phage	1.7e-27	41.7
WP_038603294.1\|1008696_1008984_+	hypothetical protein	Q9AZU4	Lactococcus_phage	4.1e-50	97.9
WP_038603297.1\|1008980_1009400_+	dUTP diphosphatase	Q9AZU3	Lactococcus_phage	3.1e-70	95.7
WP_038603300.1\|1009402_1009885_+	hypothetical protein	Q9B000	Lactococcus_phage	4.8e-67	78.3
WP_158423211.1\|1009907_1010069_+	hypothetical protein	Q9MCF7	Lactococcus_phage	2.8e-24	96.2
WP_038603305.1\|1010423_1011230_+	hypothetical protein	A0A191KBM4	Streptococcus_virus	8.9e-58	45.6
WP_038603307.1\|1011276_1011507_+	hypothetical protein	Q94M84	Lactococcus_phage	3.0e-27	78.9
WP_158423212.1\|1011503_1011677_+	hypothetical protein	NA	NA	NA	NA
WP_038603309.1\|1011676_1011913_+	hypothetical protein	A0A1W6JL28	Lactococcus_phage	6.9e-27	74.4
WP_080716003.1\|1011909_1012077_+	hypothetical protein	A0A1P8BKX9	Lactococcus_phage	8.6e-24	83.6
WP_029344328.1\|1012257_1012443_+	hypothetical protein	Q8LTR8	Lactococcus_phage	3.6e-15	68.9
WP_038603311.1\|1012439_1012724_+	hypothetical protein	A0A1P8BL62	Lactococcus_phage	3.5e-17	84.8
WP_158423213.1\|1012713_1012851_+	hypothetical protein	NA	NA	NA	NA
WP_038603312.1\|1013240_1013534_+	DUF1359 domain-containing protein	Q9AZ70	Lactococcus_phage	4.3e-26	64.9
WP_038603315.1\|1013535_1013844_+	hypothetical protein	NA	NA	NA	NA
WP_002819803.1\|1013840_1014026_+	transcriptional regulator	Q8LTL6	Lactococcus_phage	3.2e-27	100.0
WP_010905372.1\|1014106_1014529_+	RinA family protein	Q9AZM9	Lactococcus_phage	8.5e-52	100.0
1014167:1014183	attR	NA	NA	NA	NA
WP_038603319.1\|1015023_1015314_+	hypothetical protein	NA	NA	NA	NA
WP_038603321.1\|1015317_1015833_+	HNH endonuclease	Q9AZT3	Lactococcus_phage	1.9e-98	98.2
WP_038603323.1\|1015959_1016415_+\|terminase	phage terminase small subunit P27 family	Q8LTL3	Lactococcus_phage	1.9e-81	98.7
WP_038603326.1\|1016404_1018315_+\|terminase	terminase large subunit	Q8LTL2	Lactococcus_phage	0.0e+00	96.9
WP_038603328.1\|1018283_1018493_+	DUF1056 family protein	Q94MB1	Lactococcus_phage	5.0e-29	98.6
WP_080716004.1\|1018489_1019668_+\|portal	phage portal protein	Q77P35	Lactococcus_phage	2.3e-219	97.2
WP_002819795.1\|1019713_1020418_+\|protease	Clp protease ClpP	Q9AZS8	Lactococcus_phage	4.2e-120	100.0
WP_038603331.1\|1020429_1021653_+\|capsid	phage major capsid protein	E9LUQ3	Lactobacillus_phage	4.9e-140	63.7
WP_038603334.1\|1021668_1021989_+\|head,tail	phage gp6-like head-tail connector protein	Q9AZS6	Lactococcus_phage	2.0e-53	98.1
WP_038603336.1\|1021966_1022317_+\|head	phage head closure protein	Q8LTK7	Lactococcus_phage	1.8e-55	96.6
WP_038603338.1\|1022318_1022825_+	hypothetical protein	Q9AZS4	Lactococcus_phage	5.7e-87	98.2
WP_038603340.1\|1022821_1023217_+	DUF806 family protein	Q8LTK5	Lactococcus_phage	8.5e-62	90.8
WP_038603342.1\|1023247_1023862_+\|tail	tail protein	Q9AZS2	Lactococcus_phage	6.1e-91	87.0
WP_038603343.1\|1024614_1029537_+\|tail	phage tail tape measure protein	Q9AZS0	Lactococcus_phage	0.0e+00	94.4
WP_038603345.1\|1029539_1031075_+\|tail	phage tail protein	Q9AZR9	Lactococcus_phage	4.5e-284	95.7
WP_051880123.1\|1031074_1034536_+\|tail	phage tail protein	Q9AZL2	Lactococcus_phage	8.8e-296	48.3
WP_012897681.1\|1034555_1034858_+	hypothetical protein	NA	NA	NA	NA
WP_038603350.1\|1034859_1035321_+\|holin	phage holin	Q8LTJ7	Lactococcus_phage	1.5e-46	91.5
WP_038603352.1\|1035330_1036245_+	lysozyme	Q8LTJ6	Lactococcus_phage	8.4e-145	88.9
WP_012897990.1\|1036465_1036870_+	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	2.2e-28	48.8

DBSCAN-SWA_5

1080073 : 1103583

Staphylococcus_phage(21.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003130964.1\|1080073_1080766_+	cell division ATP-binding protein FtsE	G9BWD6	Planktothrix_phage	2.7e-31	34.4
WP_012897609.1\|1080758_1081694_+	ABC transporter permease	NA	NA	NA	NA
WP_012897610.1\|1081795_1082773_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	1.9e-118	66.0
WP_012897611.1\|1083180_1085349_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	6.6e-257	61.0
WP_003130968.1\|1085484_1085907_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	2.3e-12	37.3
WP_012897612.1\|1085908_1086127_-	redoxin NrdH	C3U2K9	Lactococcus_phage	7.6e-12	47.6
WP_012897613.1\|1086300_1086939_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_012897614.1\|1087213_1089148_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	1.1e-125	43.5
WP_003130975.1\|1089352_1089892_+	cysteine hydrolase family protein	NA	NA	NA	NA
WP_012897615.1\|1089884_1090718_+	3'-5' exonuclease	A0A0K2SUJ2	Clostridium_phage	3.1e-21	39.4
WP_003130977.1\|1090714_1091164_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003130980.1\|1091438_1093913_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	4.2e-98	32.2
WP_003130981.1\|1093938_1094844_-	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_012897616.1\|1095312_1096401_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.9e-50	38.8
WP_012897617.1\|1096400_1097051_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	9.4e-42	43.1
WP_012897618.1\|1097059_1098256_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.2e-112	51.3
WP_012897619.1\|1098283_1098748_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.8e-39	53.7
WP_012897620.1\|1098850_1099303_+	lipoprotein signal peptidase	NA	NA	NA	NA
WP_003130995.1\|1099363_1100269_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	5.4e-11	28.2
WP_012897621.1\|1100418_1100862_+	divergent PAP2 family protein	NA	NA	NA	NA
WP_012897622.1\|1101001_1102624_+	hypothetical protein	NA	NA	NA	NA
WP_012897623.1\|1102626_1103583_+	glycosyltransferase family 2 protein	I1TED8	Salmonella_phage	4.0e-49	37.5

DBSCAN-SWA_6

1546919 : 1557364

Lactococcus_phage(62.5%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038603502.1\|1546919_1548050_-	ImmA/IrrE family metallo-endopeptidase	B6SBZ6	Clostridium_virus	9.9e-47	34.5
WP_038603504.1\|1548833_1549013_-	hypothetical protein	Q9AZG2	Lactococcus_phage	6.6e-22	93.2
WP_038603874.1\|1549097_1550381_-	LysM peptidoglycan-binding domain-containing protein	B5SP49	Lactococcus_phage	3.1e-222	92.1
WP_038603506.1\|1550389_1550614_-\|holin	holin	Q8LTP5	Lactococcus_phage	1.8e-32	94.6
WP_015968020.1\|1550603_1550906_-	hypothetical protein	Q8LTP6	Lactococcus_phage	2.7e-52	100.0
WP_038603509.1\|1551888_1553829_-	hypothetical protein	A0A059NT86	Lactococcus_phage	2.0e-233	69.4
WP_003130477.1\|1554591_1554927_-	putative DNA-binding protein	NA	NA	NA	NA
WP_012898054.1\|1555110_1555821_+	response regulator transcription factor	A0A1V0SGR9	Hokovirus	2.0e-05	29.1
WP_012898055.1\|1555810_1557364_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	8.6e-33	39.1

DBSCAN-SWA_7

1664255 : 1674556

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012898135.1\|1664255_1665812_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	6.8e-70	45.3
WP_012898136.1\|1665987_1666530_-	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	2.3e-09	29.3
WP_012898137.1\|1666666_1667704_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_003130052.1\|1667834_1668365_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_038603550.1\|1668415_1670005_-	ABC transporter ATP-binding protein	F2Y1V6	Organic_Lake_phycodnavirus	1.1e-11	34.1
WP_012898139.1\|1670170_1670719_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.2e-19	31.7
WP_012898140.1\|1670747_1671764_-	phosphoribosylformylglycinamidine cyclo-ligase	M4QRQ6	Synechococcus_phage	6.4e-61	41.8
WP_038603552.1\|1671952_1674556_-	ATP-dependent chaperone ClpB	K4FB40	Cronobacter_phage	8.5e-126	33.1

DBSCAN-SWA_8

1746507 : 1821085

Lactococcus_phage(77.78%)

head,tail,terminase,integrase,capsid,protease,tRNA

attL 1758486:1758503|attR 1821163:1821180

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012898196.1\|1746507_1747545_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_003130721.1\|1747619_1747931_-	helix-turn-helix transcriptional regulator	A0A1S5SAD3	Streptococcus_phage	3.3e-08	40.8
WP_012898197.1\|1748009_1749182_-	DUF916 and DUF3324 domain-containing protein	NA	NA	NA	NA
WP_038603585.1\|1749304_1754254_-	hypothetical protein	NA	NA	NA	NA
WP_038603587.1\|1754290_1755046_-	WxL domain-containing protein	NA	NA	NA	NA
WP_012898200.1\|1755083_1755842_-	WxL domain-containing protein	NA	NA	NA	NA
WP_012898201.1\|1755879_1756671_-	WxL domain-containing protein	NA	NA	NA	NA
WP_003130736.1\|1756699_1757545_-	WxL domain-containing protein	NA	NA	NA	NA
WP_012898202.1\|1757605_1757911_-	hypothetical protein	NA	NA	NA	NA
1758486:1758503	attL	NA	NA	NA	NA
WP_012898203.1\|1758517_1759135_+	hypothetical protein	NA	NA	NA	NA
WP_003130743.1\|1759346_1760660_-	GTPase ObgE	NA	NA	NA	NA
WP_012898205.1\|1760809_1761988_-	cell division protein FtsQ/DivIB	NA	NA	NA	NA
WP_003130746.1\|1761988_1763062_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA
WP_003130748.1\|1763271_1764624_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA
WP_012898206.1\|1764954_1765296_-	P-II family nitrogen regulator	NA	NA	NA	NA
WP_012898207.1\|1765427_1766669_-	ammonium transporter	NA	NA	NA	NA
WP_012898208.1\|1766851_1768327_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.9e-26	33.1
WP_012898209.1\|1768335_1769028_-	response regulator transcription factor	W8CYM9	Bacillus_phage	5.3e-35	34.1
WP_012898210.1\|1769183_1769714_-	DUF177 domain-containing protein	NA	NA	NA	NA
WP_003130760.1\|1769844_1770090_-	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_012898212.1\|1770793_1771156_-	hypothetical protein	NA	NA	NA	NA
WP_144242123.1\|1772445_1772697_-	hypothetical protein	NA	NA	NA	NA
WP_080513135.1\|1772800_1773010_-	DUF1211 domain-containing protein	NA	NA	NA	NA
WP_017864806.1\|1774133_1774559_-	universal stress protein	NA	NA	NA	NA
WP_038603592.1\|1775120_1775813_-	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_012897990.1\|1775918_1776323_-	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	2.2e-28	48.8
WP_038603595.1\|1776543_1777461_-	lysozyme	Q8LTJ6	Lactococcus_phage	2.1e-140	86.9
WP_038603598.1\|1778026_1778239_-	hypothetical protein	NA	NA	NA	NA
WP_162472392.1\|1780019_1781723_-	hypothetical protein	Q9AZR8	Lactococcus_phage	2.6e-272	87.3
WP_144242124.1\|1788256_1788835_-	hypothetical protein	Q8LTK3	Lactococcus_phage	2.0e-59	93.9
WP_038603342.1\|1788947_1789562_-\|tail	tail protein	Q9AZS2	Lactococcus_phage	6.1e-91	87.0
WP_038603606.1\|1789993_1790494_-	hypothetical protein	Q9AZS4	Lactococcus_phage	1.5e-84	97.6
WP_038603336.1\|1790495_1790846_-\|head	phage head closure protein	Q8LTK7	Lactococcus_phage	1.8e-55	96.6
WP_038603334.1\|1790823_1791144_-\|head,tail	phage gp6-like head-tail connector protein	Q9AZS6	Lactococcus_phage	2.0e-53	98.1
WP_038603331.1\|1791159_1792383_-\|capsid	phage major capsid protein	E9LUQ3	Lactobacillus_phage	4.9e-140	63.7
WP_002819795.1\|1792394_1793099_-\|protease	Clp protease ClpP	Q9AZS8	Lactococcus_phage	4.2e-120	100.0
WP_038603328.1\|1794320_1794530_-	DUF1056 family protein	Q94MB1	Lactococcus_phage	5.0e-29	98.6
WP_038603323.1\|1796399_1796855_-\|terminase	phage terminase small subunit P27 family	Q8LTL3	Lactococcus_phage	1.9e-81	98.7
WP_038603319.1\|1797502_1797793_-	hypothetical protein	NA	NA	NA	NA
WP_010905372.1\|1798287_1798710_-	RinA family protein	Q9AZM9	Lactococcus_phage	8.5e-52	100.0
WP_038603315.1\|1798974_1799283_-	hypothetical protein	NA	NA	NA	NA
WP_038603609.1\|1799284_1799581_-	DUF1359 domain-containing protein	Q9AZ70	Lactococcus_phage	3.2e-21	60.2
WP_158423215.1\|1799973_1800111_-	hypothetical protein	NA	NA	NA	NA
WP_029344328.1\|1800382_1800568_-	hypothetical protein	Q8LTR8	Lactococcus_phage	3.6e-15	68.9
WP_080716003.1\|1800748_1800916_-	hypothetical protein	A0A1P8BKX9	Lactococcus_phage	8.6e-24	83.6
WP_038603309.1\|1800912_1801149_-	hypothetical protein	A0A1W6JL28	Lactococcus_phage	6.9e-27	74.4
WP_158423212.1\|1801148_1801322_-	hypothetical protein	NA	NA	NA	NA
WP_038603307.1\|1801318_1801549_-	hypothetical protein	Q94M84	Lactococcus_phage	3.0e-27	78.9
WP_038603614.1\|1802544_1802766_-	hypothetical protein	A0A1P8BKY9	Lactococcus_phage	2.7e-25	89.1
WP_158423211.1\|1802758_1802920_-	hypothetical protein	Q9MCF7	Lactococcus_phage	2.8e-24	96.2
WP_038603294.1\|1803845_1804133_-	hypothetical protein	Q9AZU4	Lactococcus_phage	4.1e-50	97.9
WP_051880139.1\|1804151_1804769_-	DUF1642 domain-containing protein	A0A1P8BKG5	Lactococcus_phage	3.1e-26	46.4
WP_038603290.1\|1804765_1804975_-	hypothetical protein	NA	NA	NA	NA
WP_038603288.1\|1805137_1805389_-	hypothetical protein	A0A1P8BLV4	Lactococcus_phage	1.7e-31	84.3
WP_038603286.1\|1805399_1805762_-	DUF658 family protein	A0A1P8BLN7	Lactococcus_phage	3.4e-57	96.7
WP_038603616.1\|1806009_1806429_-	RusA family crossover junction endodeoxyribonuclease	A7DYE2	Streptococcus_phage	1.0e-17	39.4
WP_038603618.1\|1806437_1806680_-	hypothetical protein	A5GZ49	Lactococcus_phage	1.2e-34	81.2
WP_080716017.1\|1806672_1807518_-	DnaD domain protein	A5GZ47	Lactococcus_phage	6.1e-65	61.4
WP_038603621.1\|1807762_1808563_-	DNA recombination protein RecT	Q9AZQ0	Lactococcus_phage	1.1e-76	60.9
WP_017864659.1\|1808555_1809392_-	hypothetical protein	A0A1P8BKZ1	Lactococcus_phage	4.1e-106	82.6
WP_038603623.1\|1809494_1809668_-	putative transcriptional regulator	A0A1B1IMG1	Lactococcus_phage	4.0e-24	96.5
WP_038603625.1\|1809698_1809935_-	DUF1408 domain-containing protein	Q9MC36	Lactococcus_phage	3.9e-38	97.4
WP_038603627.1\|1810038_1810539_+	hypothetical protein	A0A182BQC2	Lactococcus_phage	2.0e-44	56.3
WP_038603630.1\|1810516_1810765_-	hypothetical protein	A0A182BQC3	Lactococcus_phage	6.8e-25	77.8
WP_003130869.1\|1810917_1811256_-	hypothetical protein	A0A1B1IMQ1	Lactococcus_phage	9.8e-59	99.1
WP_038603632.1\|1811269_1812067_-	antirepressor	Q38330	Lactococcus_phage	2.4e-111	78.9
WP_021468383.1\|1812079_1812328_-	helix-turn-helix transcriptional regulator	A0A097BYF3	Leuconostoc_phage	1.9e-11	56.9
WP_038603636.1\|1812459_1812714_+	DUF2513 domain-containing protein	NA	NA	NA	NA
WP_017865020.1\|1812710_1812914_-	hypothetical protein	NA	NA	NA	NA
WP_038603638.1\|1813096_1813465_+	hypothetical protein	NA	NA	NA	NA
WP_038603641.1\|1813804_1814329_+	XRE family transcriptional regulator	Q9AZW3	Lactococcus_phage	3.9e-30	50.0
WP_038603644.1\|1814339_1814927_+	hypothetical protein	Q9AZW4	Lactococcus_phage	2.4e-92	85.0
WP_038600379.1\|1814962_1815244_+	hypothetical protein	NA	NA	NA	NA
WP_051880141.1\|1815299_1816166_+	hypothetical protein	NA	NA	NA	NA
WP_038603918.1\|1816295_1817435_+\|integrase	site-specific integrase	A0A1B1IMP1	Lactococcus_phage	2.3e-208	97.9
WP_012898213.1\|1817540_1818614_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	2.6e-60	35.1
WP_012898214.1\|1818677_1819610_-	aspartate carbamoyltransferase catalytic subunit	M1HWF9	Paramecium_bursaria_Chlorella_virus	1.1e-22	30.5
WP_010906053.1\|1819792_1821085_-	uracil-xanthine permease	Q9KX94	Enterobacteria_phage	1.6e-61	35.9
1821163:1821180	attR	NA	NA	NA	NA

DBSCAN-SWA_9

1955967 : 1965825

Prochlorococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003130886.1\|1955967_1956729_-	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.5e-17	30.0
WP_003130885.1\|1956894_1957704_-	phosphate ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	7.0e-10	26.5
WP_003130884.1\|1957737_1958631_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_003130883.1\|1958630_1959554_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_012898307.1\|1959674_1960526_-	phosphate ABC transporter substrate-binding protein	E3SNT9	Prochlorococcus_phage	2.4e-05	27.3
WP_003130880.1\|1960872_1961769_-	phosphate ABC transporter substrate-binding protein	E3SM63	Prochlorococcus_phage	7.2e-08	32.4
WP_003130878.1\|1962045_1962513_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.7e-43	56.6
WP_161934612.1\|1962544_1963111_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_012898309.1\|1963206_1965825_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	5.5e-64	33.3

DBSCAN-SWA_10

2070960 : 2085897

Lactococcus_phage(86.67%)

integrase

attL 2068961:2068980|attR 2081594:2081613

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2068961:2068980	attL	NA	NA	NA	NA
WP_010906204.1\|2070960_2071881_-	DUF4065 domain-containing protein	Q9AZG0	Lactococcus_phage	1.6e-172	99.7
WP_010906205.1\|2071892_2072189_-	hypothetical protein	Q9AZG1	Lactococcus_phage	1.6e-49	100.0
WP_010906206.1\|2072377_2072557_-	hypothetical protein	Q9AZG2	Lactococcus_phage	9.2e-24	100.0
WP_012898378.1\|2072748_2072979_-	hypothetical protein	A0A1P8BME4	Lactococcus_phage	4.6e-36	93.4
WP_012898379.1\|2073121_2073628_-	GNAT family N-acetyltransferase	Q9AZG4	Lactococcus_phage	5.5e-90	99.4
WP_021722667.1\|2074255_2074504_-	hypothetical protein	NA	NA	NA	NA
WP_012898382.1\|2074500_2074857_-	phage protein	NA	NA	NA	NA
WP_012898383.1\|2075015_2075222_-	hypothetical protein	Q9AZG9	Lactococcus_phage	2.4e-31	95.6
WP_012898385.1\|2075782_2077480_-	hypothetical protein	Q9AZH2	Lactococcus_phage	4.1e-246	96.4
WP_012898386.1\|2077489_2077759_-	hypothetical protein	Q9AZH3	Lactococcus_phage	1.1e-39	97.8
WP_012898387.1\|2077904_2078159_-	hypothetical protein	Q9AZH5	Lactococcus_phage	2.9e-15	89.1
WP_012898388.1\|2078160_2078331_-	DUF1655 domain-containing protein	Q9AZH6	Lactococcus_phage	1.8e-24	96.4
WP_012898389.1\|2078395_2079088_-	Rha family transcriptional regulator	R9QNB1	Lactococcus_phage	7.5e-114	97.3
WP_012898390.1\|2079182_2079377_-	hypothetical protein	R9QNG3	Lactococcus_phage	2.1e-05	43.5
WP_012898391.1\|2079534_2080221_+	helix-turn-helix transcriptional regulator	O34051	Streptococcus_phage	1.4e-06	40.3
WP_012898392.1\|2080295_2081495_+\|integrase	site-specific integrase	Q9AZI0	Lactococcus_phage	2.2e-177	77.7
WP_012898393.1\|2081641_2082085_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
2081594:2081613	attR	NA	NA	NA	NA
WP_012898394.1\|2082162_2082744_-	uracil-DNA glycosylase family protein	NA	NA	NA	NA
WP_012898395.1\|2083074_2085897_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.4e-304	55.9

DBSCAN-SWA_11

2465377 : 2474844

Lactococcus_phage(90.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012898673.1\|2465377_2465572_-	hypothetical protein	Q9AZK1	Lactococcus_phage	4.3e-27	93.8
WP_012898674.1\|2465919_2466246_-	hypothetical protein	NA	NA	NA	NA
WP_012898676.1\|2467130_2467499_-	phage protein	NA	NA	NA	NA
WP_012898677.1\|2467739_2468351_-	helix-turn-helix transcriptional regulator	J9QD19	Clostridium_phage	4.6e-06	42.4
WP_012898678.1\|2468482_2468662_+	hypothetical protein	NA	NA	NA	NA
WP_012898679.1\|2468831_2469524_+	Bro-N domain-containing protein	NA	NA	NA	NA
WP_012898680.1\|2469598_2469793_+	DUF1655 domain-containing protein	Q9AZJ4	Lactococcus_phage	1.6e-26	93.8
WP_012898681.1\|2469796_2470321_+	hypothetical protein	Q9AZJ3	Lactococcus_phage	6.8e-67	75.9
WP_012898682.1\|2470317_2470599_+	hypothetical protein	Q9AZJ1	Lactococcus_phage	1.1e-44	94.6
WP_012898683.1\|2470641_2470881_+	hypothetical protein	Q9AZJ0	Lactococcus_phage	2.0e-37	93.7
WP_012898685.1\|2471130_2471325_+	hypothetical protein	Q9AZE8	Lactococcus_phage	3.9e-28	98.4
WP_012898686.1\|2471311_2471641_+	hypothetical protein	Q9AZI7	Lactococcus_phage	3.5e-53	91.7
WP_012898688.1\|2472450_2474079_+	DNA primase	Q9AZI5	Lactococcus_phage	7.8e-303	94.1
WP_012898689.1\|2474304_2474844_+	hypothetical protein	Q9AZI4	Lactococcus_phage	4.6e-50	62.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage