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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011396 Salmonella enterica subsp. enterica serovar Thompson str. ATCC 8391 isolate CFSAN000736 chromosome, complete genome 4 crisprs PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG 0 23 4 0

Results visualization

1. NZ_CP011396
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011396_1 89672-89766 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011396_2 952920-954107 TypeI-E I-E
19 spacers
cas3,cas8e,cse2gr11,cas7,cas5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011396_3 970277-971955 TypeI-E I-E
27 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011396_4 2864319-2864447 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP011396_3 3.4|970489|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 970489-970520 32 NZ_KU963390 Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence 11380-11411 0 1.0
NZ_CP011396_3 3.4|970489|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 970489-970520 32 NZ_KU963390 Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence 51216-51247 0 1.0
NZ_CP011396_3 3.4|970489|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 970489-970520 32 NZ_CP010193 Escherichia coli strain M8 plasmid B, complete genome 13579-13610 0 1.0
NZ_CP011396_2 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953620-953651 32 NZ_CP010173 Escherichia coli strain H8 plasmid A, complete sequence 43964-43995 2 0.938
NZ_CP011396_2 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953620-953651 32 NZ_CP021729 Escherichia coli strain Combat11I9 plasmid pCombat11I9-3, complete sequence 74371-74402 2 0.938
NZ_CP011396_2 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953620-953651 32 NZ_CP046005 Escherichia coli strain 1919D3 plasmid p1919D3-2, complete sequence 16994-17025 2 0.938
NZ_CP011396_2 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953620-953651 32 MG592476 Vibrio phage 1.104.O._10N.286.49.A12, partial genome 53386-53417 2 0.938
NZ_CP011396_2 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953620-953651 32 MG592538 Vibrio phage 1.171.O._10N.261.52.F12, partial genome 52140-52171 2 0.938
NZ_CP011396_2 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953620-953651 32 MG592428 Vibrio phage 1.046.O._10N.286.52.E3, partial genome 57590-57621 2 0.938
NZ_CP011396_2 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953620-953651 32 CP054337 Escherichia coli strain SCU-120 plasmid pSCU-120-2, complete sequence 29797-29828 4 0.875
NZ_CP011396_2 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953620-953651 32 NZ_CP021537 Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence 42949-42980 4 0.875
NZ_CP011396_2 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953620-953651 32 NZ_CP026938 Escherichia coli strain CFS3292 plasmid pCFS3292-3, complete sequence 78817-78848 4 0.875
NZ_CP011396_2 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953620-953651 32 NZ_MH844525 Escherichia coli strain SCEC128 plasmid pSCEC128, complete sequence 28593-28624 4 0.875
NZ_CP011396_2 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953620-953651 32 NZ_MH580301 Escherichia coli strain 1107 plasmid p1107-99K, complete sequence 9058-9089 4 0.875
NZ_CP011396_2 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953620-953651 32 NZ_CP042508 Leclercia adecarboxylata strain E1 plasmid pE1_003, complete sequence 12322-12353 4 0.875
NZ_CP011396_2 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953620-953651 32 NZ_CP040893 Leclercia adecarboxylata strain Z96-1 plasmid pZ96-1_2, complete sequence 56847-56878 4 0.875
NZ_CP011396_3 3.4|970489|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 970489-970520 32 NC_011148 Salmonella enterica subsp. enterica serovar Agona str. SL483 plasmid, complete sequence 16491-16522 4 0.875
NZ_CP011396_3 3.6|970611|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 970611-970642 32 NZ_CP041251 Raoultella electrica strain DSM 102253 plasmid unnamed4, complete sequence 4814-4845 4 0.875
NZ_CP011396_3 3.10|970855|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 970855-970886 32 NC_021559 Prochlorococcus phage P-SSM3 genomic sequence 102367-102398 5 0.844
NZ_CP011396_3 3.4|970489|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 970489-970520 32 NC_017903 Escherichia coli Xuzhou21 plasmid pO157_Sal, complete sequence 7494-7525 6 0.812
NZ_CP011396_3 3.10|970855|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 970855-970886 32 MN694803 Marine virus AFVG_250M814, complete genome 36099-36130 6 0.812
NZ_CP011396_2 2.7|953315|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953315-953346 32 KX657793 Mycobacterium phage DarthPhader, complete genome 27141-27172 7 0.781
NZ_CP011396_2 2.8|953376|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953376-953407 32 NZ_CP006990 Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence 478474-478505 7 0.781
NZ_CP011396_2 2.8|953376|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953376-953407 32 NZ_CP013556 Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence 716796-716827 7 0.781
NZ_CP011396_2 2.8|953376|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953376-953407 32 NZ_CP020911 Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence 633092-633123 7 0.781
NZ_CP011396_2 2.8|953376|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953376-953407 32 NC_021911 Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence 493788-493819 7 0.781
NZ_CP011396_2 2.8|953376|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953376-953407 32 NZ_CP013567 Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence 716796-716827 7 0.781
NZ_CP011396_2 2.8|953376|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953376-953407 32 NZ_CP021127 Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence 443317-443348 7 0.781
NZ_CP011396_2 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953620-953651 32 NC_017385 Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence 198251-198282 7 0.781
NZ_CP011396_2 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953620-953651 32 NZ_CP012910 Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence 46733-46764 7 0.781
NZ_CP011396_2 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953620-953651 32 NC_014626 Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence 6403-6434 7 0.781
NZ_CP011396_2 2.18|953986|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953986-954017 32 MF495478 Aeromonas salmonicida plasmid pS121-1b, complete sequence 117450-117481 7 0.781
NZ_CP011396_2 2.18|953986|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953986-954017 32 NZ_CP038450 Aeromonas media strain R50-22 plasmid pAeme6, complete sequence 31198-31229 7 0.781
NZ_CP011396_2 2.18|953986|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953986-954017 32 NZ_CP022170 Aeromonas salmonicida strain S121 plasmid pS121-1a, complete sequence 125043-125074 7 0.781
NZ_CP011396_3 3.18|971345|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 971345-971376 32 MH651182 Gordonia phage Neville, complete genome 14047-14078 7 0.781
NZ_CP011396_2 2.6|953254|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953254-953285 32 MN693945 Marine virus AFVG_250M952, complete genome 30837-30868 8 0.75
NZ_CP011396_2 2.6|953254|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953254-953285 32 MT773554 Myoviridae sp. isolate BML_2 genomic sequence 32798-32829 8 0.75
NZ_CP011396_2 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953681-953712 32 MK448563 Streptococcus satellite phage Javan601, complete genome 3004-3035 8 0.75
NZ_CP011396_2 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953681-953712 32 MK448565 Streptococcus satellite phage Javan603, complete genome 3286-3317 8 0.75
NZ_CP011396_2 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953681-953712 32 MK448571 Streptococcus satellite phage Javan609, complete genome 3004-3035 8 0.75
NZ_CP011396_2 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953681-953712 32 MK448575 Streptococcus satellite phage Javan612, complete genome 3004-3035 8 0.75
NZ_CP011396_2 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953681-953712 32 MK448567 Streptococcus satellite phage Javan605, complete genome 3004-3035 8 0.75
NZ_CP011396_2 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953681-953712 32 MK448574 Streptococcus satellite phage Javan611, complete genome 2668-2699 8 0.75
NZ_CP011396_2 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953681-953712 32 MK448578 Streptococcus satellite phage Javan615, complete genome 2609-2640 8 0.75
NZ_CP011396_2 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953681-953712 32 MK448577 Streptococcus satellite phage Javan614, complete genome 2586-2617 8 0.75
NZ_CP011396_2 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953681-953712 32 MK448573 Streptococcus satellite phage Javan610, complete genome 3036-3067 8 0.75
NZ_CP011396_2 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953681-953712 32 MK448568 Streptococcus satellite phage Javan606, complete genome 3004-3035 8 0.75
NZ_CP011396_2 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953681-953712 32 MK448570 Streptococcus satellite phage Javan608, complete genome 3036-3067 8 0.75
NZ_CP011396_2 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953681-953712 32 MK448564 Streptococcus satellite phage Javan602, complete genome 3286-3317 8 0.75
NZ_CP011396_2 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953681-953712 32 MK448566 Streptococcus satellite phage Javan604, complete genome 3004-3035 8 0.75
NZ_CP011396_2 2.14|953742|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953742-953773 32 NZ_CP017759 Cupriavidus necator strain NH9 plasmid pENH92, complete sequence 48479-48510 8 0.75
NZ_CP011396_2 2.15|953803|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953803-953834 32 NZ_CP017759 Cupriavidus necator strain NH9 plasmid pENH92, complete sequence 48479-48510 8 0.75
NZ_CP011396_2 2.16|953864|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953864-953895 32 NZ_CP017759 Cupriavidus necator strain NH9 plasmid pENH92, complete sequence 48479-48510 8 0.75
NZ_CP011396_2 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953925-953956 32 NZ_HG938354 Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence 227163-227194 8 0.75
NZ_CP011396_2 2.18|953986|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953986-954017 32 NZ_CP048109 Klebsiella michiganensis strain BD177 plasmid unnamed1 11553-11584 8 0.75
NZ_CP011396_2 2.19|954047|32|NZ_CP011396|CRISPRCasFinder,CRT 954047-954078 32 JX434031 Pseudomonas phage JBD24, complete genome 2242-2273 8 0.75
NZ_CP011396_3 3.5|970550|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 970550-970581 32 NZ_CP024786 Nostoc flagelliforme CCNUN1 plasmid pNFSY01, complete sequence 14571-14602 8 0.75
NZ_CP011396_3 3.5|970550|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 970550-970581 32 NZ_CP026687 Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM5, complete sequence 3635-3666 8 0.75
NZ_CP011396_3 3.15|971162|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 971162-971193 32 NZ_CP049029 Fluviibacterium aquatile strain SC52 plasmid pSC52_1, complete sequence 198521-198552 8 0.75
NZ_CP011396_3 3.17|971284|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 971284-971315 32 NZ_CP039340 Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence 290305-290336 8 0.75
NZ_CP011396_2 2.7|953315|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953315-953346 32 NC_012811 Methylorubrum extorquens AM1 megaplasmid, complete sequence 1179902-1179933 9 0.719
NZ_CP011396_2 2.10|953498|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953498-953529 32 MN694334 Marine virus AFVG_250M1054, complete genome 5152-5183 9 0.719
NZ_CP011396_2 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953620-953651 32 NC_021289 Burkholderia insecticola plasmid p1, complete sequence 1162182-1162213 9 0.719
NZ_CP011396_3 3.5|970550|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 970550-970581 32 NZ_CP054718 Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence 64408-64439 9 0.719
NZ_CP011396_3 3.5|970550|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 970550-970581 32 NZ_CP054718 Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence 88752-88783 9 0.719
NZ_CP011396_3 3.10|970855|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 970855-970886 32 MN693670 Marine virus AFVG_250M508, complete genome 3528-3559 9 0.719
NZ_CP011396_3 3.10|970855|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 970855-970886 32 MN693662 Marine virus AFVG_250M383, complete genome 3578-3609 9 0.719
NZ_CP011396_3 3.10|970855|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 970855-970886 32 MN694314 Marine virus AFVG_250M513, complete genome 34322-34353 9 0.719
NZ_CP011396_3 3.13|971039|33|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 971039-971071 33 NC_014825 Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL02, complete sequence 201147-201179 9 0.727
NZ_CP011396_3 3.17|971284|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 971284-971315 32 NZ_CP017833 Butyrivibrio hungatei strain MB2003 plasmid pNP6, complete sequence 3577-3608 9 0.719
NZ_CP011396_2 2.5|953193|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953193-953224 32 MN694012 Marine virus AFVG_250M887, complete genome 22169-22200 10 0.688
NZ_CP011396_2 2.7|953315|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953315-953346 32 NZ_KU140623 Sinorhizobium sp. M14 plasmid pSinB, complete sequence 129526-129557 10 0.688
NZ_CP011396_2 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953620-953651 32 NZ_CP010682 Phaeobacter piscinae strain P14 plasmid pP14_a, complete sequence 38809-38840 10 0.688
NZ_CP011396_2 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953620-953651 32 NZ_CP010644 Phaeobacter piscinae strain P36 plasmid pP36_a, complete sequence 38859-38890 10 0.688
NZ_CP011396_2 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953925-953956 32 KX349325 Cyanophage S-RIM12 isolate W1_24_0910, complete genome 14478-14509 10 0.688
NZ_CP011396_2 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953925-953956 32 KX349322 Cyanophage S-RIM12 isolate Sn_31_0910, complete genome 14481-14512 10 0.688
NZ_CP011396_2 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953925-953956 32 KX349320 Cyanophage S-RIM12 isolate RW_29_1109, complete genome 14619-14650 10 0.688
NZ_CP011396_2 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953925-953956 32 KX349310 Cyanophage S-RIM12 isolate RW_01_0310, complete genome 14374-14405 10 0.688
NZ_CP011396_2 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953925-953956 32 KX349321 Cyanophage S-RIM12 isolate Sn_07_0910, complete genome 14374-14405 10 0.688
NZ_CP011396_2 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953925-953956 32 KX349324 Cyanophage S-RIM12 isolate W1_12_0610, complete genome 14571-14602 10 0.688
NZ_CP011396_2 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953925-953956 32 KX349314 Cyanophage S-RIM12 isolate RW_07_1112, complete genome 14619-14650 10 0.688
NZ_CP011396_2 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953925-953956 32 KX349316 Cyanophage S-RIM12 isolate RW_22_0110, complete genome 14619-14650 10 0.688
NZ_CP011396_2 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953925-953956 32 KJ019063 Synechococcus phage ACG-2014c isolate Syn7803C97, complete genome 164294-164325 10 0.688
NZ_CP011396_2 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953925-953956 32 KJ019027 Synechococcus phage ACG-2014c isolate Syn7803C43, complete genome 166603-166634 10 0.688
NZ_CP011396_2 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953925-953956 32 KX349315 Cyanophage S-RIM12 isolate RW_14_0101, complete genome 14625-14656 10 0.688
NZ_CP011396_2 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953925-953956 32 KX349317 Cyanophage S-RIM12 isolate RW_25_0210, complete genome 14625-14656 10 0.688
NZ_CP011396_2 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953925-953956 32 NC_019444 Synechococcus phage S-MbCM6, complete genome 166612-166643 10 0.688
NZ_CP011396_2 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953925-953956 32 KJ019128 Synechococcus phage ACG-2014c isolate Syn7803US88, complete genome 166709-166740 10 0.688
NZ_CP011396_2 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953925-953956 32 NC_015285 Prochlorococcus phage Syn33, complete genome 14618-14649 10 0.688
NZ_CP011396_2 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953925-953956 32 KX349309 Cyanophage S-RIM12 isolate Np_22_1112, complete genome 14613-14644 10 0.688
NZ_CP011396_2 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953925-953956 32 KX349319 Cyanophage S-RIM12 isolate RW_28_1109, complete genome 14604-14635 10 0.688
NZ_CP011396_2 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 953925-953956 32 KX349318 Cyanophage S-RIM12 isolate RW_27_0310, complete genome 14685-14716 10 0.688
NZ_CP011396_3 3.10|970855|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 970855-970886 32 MN694051 Marine virus AFVG_250M33, complete genome 34372-34403 10 0.688
NZ_CP011396_3 3.20|971467|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT 971467-971498 32 MK249150 Blackfly microvirus SF02 isolate 046, complete genome 3613-3644 10 0.688
NZ_CP011396_3 3.27|971895|32|NZ_CP011396|CRISPRCasFinder,CRT 971895-971926 32 CP054927 Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence 47822-47853 11 0.656

1. spacer 3.4|970489|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU963390 (Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence) position: , mismatch: 0, identity: 1.0

tttggttgatgcgtcaaacctcgctaactttg	CRISPR spacer
tttggttgatgcgtcaaacctcgctaactttg	Protospacer
********************************

2. spacer 3.4|970489|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU963390 (Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence) position: , mismatch: 0, identity: 1.0

tttggttgatgcgtcaaacctcgctaactttg	CRISPR spacer
tttggttgatgcgtcaaacctcgctaactttg	Protospacer
********************************

3. spacer 3.4|970489|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010193 (Escherichia coli strain M8 plasmid B, complete genome) position: , mismatch: 0, identity: 1.0

tttggttgatgcgtcaaacctcgctaactttg	CRISPR spacer
tttggttgatgcgtcaaacctcgctaactttg	Protospacer
********************************

4. spacer 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010173 (Escherichia coli strain H8 plasmid A, complete sequence) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagccgaaaa	Protospacer
*********************** *****.**

5. spacer 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021729 (Escherichia coli strain Combat11I9 plasmid pCombat11I9-3, complete sequence) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagccgaaaa	Protospacer
*********************** *****.**

6. spacer 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046005 (Escherichia coli strain 1919D3 plasmid p1919D3-2, complete sequence) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagccgaaaa	Protospacer
*********************** *****.**

7. spacer 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MG592476 (Vibrio phage 1.104.O._10N.286.49.A12, partial genome) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgcagggatattgcgccgagccgagaa	Protospacer
******** ************** ********

8. spacer 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MG592538 (Vibrio phage 1.171.O._10N.261.52.F12, partial genome) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatactgcgccgagccgagaa	Protospacer
***************.******* ********

9. spacer 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MG592428 (Vibrio phage 1.046.O._10N.286.52.E3, partial genome) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgcagggatattgcgccgagccgagaa	Protospacer
******** ************** ********

10. spacer 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to CP054337 (Escherichia coli strain SCU-120 plasmid pSCU-120-2, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagcagaggc	Protospacer
*********************** ** ***. 

11. spacer 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021537 (Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagcagaggc	Protospacer
*********************** ** ***. 

12. spacer 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026938 (Escherichia coli strain CFS3292 plasmid pCFS3292-3, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagcagaggc	Protospacer
*********************** ** ***. 

13. spacer 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH844525 (Escherichia coli strain SCEC128 plasmid pSCEC128, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagcagaggc	Protospacer
*********************** ** ***. 

14. spacer 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH580301 (Escherichia coli strain 1107 plasmid p1107-99K, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagcagaggc	Protospacer
*********************** ** ***. 

15. spacer 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042508 (Leclercia adecarboxylata strain E1 plasmid pE1_003, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattacgccgcgcagtcaa	Protospacer
*****************.******** *  **

16. spacer 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040893 (Leclercia adecarboxylata strain Z96-1 plasmid pZ96-1_2, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattacgccgcgcagtcaa	Protospacer
*****************.******** *  **

17. spacer 3.4|970489|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NC_011148 (Salmonella enterica subsp. enterica serovar Agona str. SL483 plasmid, complete sequence) position: , mismatch: 4, identity: 0.875

tttggttgatgcgtcaaacctcgctaactttg	CRISPR spacer
cctgattgatgcttcaaacctcgctaactttg	Protospacer
..**.******* *******************

18. spacer 3.6|970611|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041251 (Raoultella electrica strain DSM 102253 plasmid unnamed4, complete sequence) position: , mismatch: 4, identity: 0.875

gagcgatgttggcatggcattggtttactgta	CRISPR spacer
gggtgatgtaggtatggcattggtttactgta	Protospacer
*.*.***** **.*******************

19. spacer 3.10|970855|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NC_021559 (Prochlorococcus phage P-SSM3 genomic sequence) position: , mismatch: 5, identity: 0.844

gacgct-tcacctgcatcaaattctcctccagt	CRISPR spacer
-acactatcacctgcagcaaattctgctccaga	Protospacer
 **.** ********* ******** ****** 

20. spacer 3.4|970489|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NC_017903 (Escherichia coli Xuzhou21 plasmid pO157_Sal, complete sequence) position: , mismatch: 6, identity: 0.812

tttggttgatgcgtcaaacctcgctaactttg	CRISPR spacer
ccttattgatgcttctaacctcgctaactttg	Protospacer
..* .******* ** ****************

21. spacer 3.10|970855|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MN694803 (Marine virus AFVG_250M814, complete genome) position: , mismatch: 6, identity: 0.812

gacgcttcacctgcatcaaattctcctccagt--	CRISPR spacer
aacccttcacctgcatcatattct--tccaggcg	Protospacer
.** ************** *****  *****   

22. spacer 2.7|953315|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to KX657793 (Mycobacterium phage DarthPhader, complete genome) position: , mismatch: 7, identity: 0.781

ccgcagaacgccgcatcgccgaactggacaaa	CRISPR spacer
cgttcgaccgccgcatagccgaactggacaag	Protospacer
*  . ** ******** **************.

23. spacer 2.8|953376|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006990 (Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.  

24. spacer 2.8|953376|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013556 (Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.  

25. spacer 2.8|953376|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.  

26. spacer 2.8|953376|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.  

27. spacer 2.8|953376|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013567 (Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.  

28. spacer 2.8|953376|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021127 (Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.  

29. spacer 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NC_017385 (Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.781

gcgtg-cgccgggatattgcgccgcgccgagaa	CRISPR spacer
-catgccgccgcgatattgccccgcgccgccag	Protospacer
 *.** ***** ******** ********  *.

30. spacer 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012910 (Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.781

gcgtg-cgccgggatattgcgccgcgccgagaa	CRISPR spacer
-catgccgccgcgatattgccccgcgccgccag	Protospacer
 *.** ***** ******** ********  *.

31. spacer 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NC_014626 (Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence) position: , mismatch: 7, identity: 0.781

gcgtg-cgccgggatattgcgccgcgccgagaa	CRISPR spacer
-catgccgccgcgatattgccccgcgccgccag	Protospacer
 *.** ***** ******** ********  *.

32. spacer 2.18|953986|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MF495478 (Aeromonas salmonicida plasmid pS121-1b, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtggtgtatatcggtcttgatgcgttgtc	CRISPR spacer
gcagtggtctatatcggtctggatgccatgac	Protospacer
*  ***** *********** *****  ** *

33. spacer 2.18|953986|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038450 (Aeromonas media strain R50-22 plasmid pAeme6, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtggtgtatatcggtcttgatgcgttgtc	CRISPR spacer
gcagtggtctatatcggtctggatgccatgac	Protospacer
*  ***** *********** *****  ** *

34. spacer 2.18|953986|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022170 (Aeromonas salmonicida strain S121 plasmid pS121-1a, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtggtgtatatcggtcttgatgcgttgtc	CRISPR spacer
gcagtggtctatatcggtctggatgccatgac	Protospacer
*  ***** *********** *****  ** *

35. spacer 3.18|971345|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MH651182 (Gordonia phage Neville, complete genome) position: , mismatch: 7, identity: 0.781

ccttggcggcagccacctgagcaactgtcggg	CRISPR spacer
caatctcggcagtcacctgagcaactgtcaag	Protospacer
*  *  ******.****************..*

36. spacer 2.6|953254|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MN693945 (Marine virus AFVG_250M952, complete genome) position: , mismatch: 8, identity: 0.75

accgttatctgctggttgatacttccccgagc---	CRISPR spacer
gccgttatcggctggtttatactt---aaagcaaa	Protospacer
.******** ******* ******    .***   

37. spacer 2.6|953254|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MT773554 (Myoviridae sp. isolate BML_2 genomic sequence) position: , mismatch: 8, identity: 0.75

accgttatctgctggttgatacttccccgagc	CRISPR spacer
aacattatctgctggttgatagtttccataat	Protospacer
* *.***************** **.**  *..

38. spacer 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MK448563 (Streptococcus satellite phage Javan601, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ * 

39. spacer 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MK448565 (Streptococcus satellite phage Javan603, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ * 

40. spacer 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MK448571 (Streptococcus satellite phage Javan609, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ * 

41. spacer 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MK448575 (Streptococcus satellite phage Javan612, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ * 

42. spacer 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MK448567 (Streptococcus satellite phage Javan605, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ * 

43. spacer 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MK448574 (Streptococcus satellite phage Javan611, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ * 

44. spacer 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MK448578 (Streptococcus satellite phage Javan615, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ * 

45. spacer 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MK448577 (Streptococcus satellite phage Javan614, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ * 

46. spacer 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MK448573 (Streptococcus satellite phage Javan610, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ * 

47. spacer 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MK448568 (Streptococcus satellite phage Javan606, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ * 

48. spacer 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MK448570 (Streptococcus satellite phage Javan608, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ * 

49. spacer 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MK448564 (Streptococcus satellite phage Javan602, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ * 

50. spacer 2.13|953681|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MK448566 (Streptococcus satellite phage Javan604, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ * 

51. spacer 2.14|953742|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 8, identity: 0.75

aaaactgcaccgccgctgccactgagtttgct	CRISPR spacer
gatgtagcacagccgctgccactgattttggt	Protospacer
.* .. **** ************** **** *

52. spacer 2.15|953803|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 8, identity: 0.75

aaaactgcaccgccgctgccactgagtttgct	CRISPR spacer
gatgtagcacagccgctgccactgattttggt	Protospacer
.* .. **** ************** **** *

53. spacer 2.16|953864|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 8, identity: 0.75

aaaactgcaccgccgctgccactgagtttgct	CRISPR spacer
gatgtagcacagccgctgccactgattttggt	Protospacer
.* .. **** ************** **** *

54. spacer 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 8, identity: 0.75

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
gtgtcgtatttacaggtgtcacggttttccct	Protospacer
*.*. * *************** *** ***  

55. spacer 2.18|953986|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048109 (Klebsiella michiganensis strain BD177 plasmid unnamed1) position: , mismatch: 8, identity: 0.75

ggcgtggtgtatatcggtcttgatgcgttgtc	CRISPR spacer
gccgtggtgtatatcggcctcgatgcactcag	Protospacer
* ***************.**.*****..*   

56. spacer 2.19|954047|32|NZ_CP011396|CRISPRCasFinder,CRT matches to JX434031 (Pseudomonas phage JBD24, complete genome) position: , mismatch: 8, identity: 0.75

gtcacgaggtctgacgcggatgtgatg--agtta	CRISPR spacer
tcggcgaggtctgccgcgaatgtgatggcagt--	Protospacer
 . .********* ****.********  ***  

57. spacer 3.5|970550|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024786 (Nostoc flagelliforme CCNUN1 plasmid pNFSY01, complete sequence) position: , mismatch: 8, identity: 0.75

gcggaataataaatggagtgccatttgtagca	CRISPR spacer
gttgaataataaatgcagtgccttttcttcta	Protospacer
*. ************ ****** *** *  .*

58. spacer 3.5|970550|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026687 (Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM5, complete sequence) position: , mismatch: 8, identity: 0.75

gcggaataataaatggagtgccatttgtagca	CRISPR spacer
gttgaataataaatgcagtgccttttcttcta	Protospacer
*. ************ ****** *** *  .*

59. spacer 3.15|971162|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049029 (Fluviibacterium aquatile strain SC52 plasmid pSC52_1, complete sequence) position: , mismatch: 8, identity: 0.75

ttgcgctgttctattggcggcaattctctgaa----	CRISPR spacer
ccgcgctgttcaattggcggcgat----tgaagcgc	Protospacer
..********* *********.**    ****    

60. spacer 3.17|971284|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 8, identity: 0.75

acacgccagccaacaatattaattttgtcgtc	CRISPR spacer
aaaaatgggccatcaatattaattttgtcgtt	Protospacer
* * .. .**** ******************.

61. spacer 2.7|953315|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

ccgcagaacgccgcatcgccgaactggacaaa	CRISPR spacer
ccgcagaacgccgcattgccggacctcattcc	Protospacer
****************.****.**.  *.   

62. spacer 2.10|953498|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MN694334 (Marine virus AFVG_250M1054, complete genome) position: , mismatch: 9, identity: 0.719

tgctgaatctttgcgagtgggatgatggcact	CRISPR spacer
aggttcggctttgcgagttggctgatggcacc	Protospacer
 * *  . ********** ** *********.

63. spacer 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
tcgcgcgccgggatattgcgcagcgtgaacgc	Protospacer
 **.***************** ***. .* . 

64. spacer 3.5|970550|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gcggaataataaatggagtgccatttgtagca	CRISPR spacer
cgctaataataaatggaatgccatgtggggcg	Protospacer
    *************.****** ** .**.

65. spacer 3.5|970550|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gcggaataataaatggagtgccatttgtagca	CRISPR spacer
cgctaataataaatggaatgccatgtggggcg	Protospacer
    *************.****** ** .**.

66. spacer 3.10|970855|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MN693670 (Marine virus AFVG_250M508, complete genome) position: , mismatch: 9, identity: 0.719

gacgcttcacctgcatcaaattctcctccagt	CRISPR spacer
tagccttcacctgcgtcaaattcttctaatct	Protospacer
 *  **********.*********.**    *

67. spacer 3.10|970855|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MN693662 (Marine virus AFVG_250M383, complete genome) position: , mismatch: 9, identity: 0.719

gacgcttcacctgcatcaaattctcctccagt	CRISPR spacer
tagccttcacctgcgtcaaattcttctaatct	Protospacer
 *  **********.*********.**    *

68. spacer 3.10|970855|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MN694314 (Marine virus AFVG_250M513, complete genome) position: , mismatch: 9, identity: 0.719

gacgcttcacctgcatcaaattctcctccagt	CRISPR spacer
tagccttcacctgcgtcaaattcttctaatct	Protospacer
 *  **********.*********.**    *

69. spacer 3.13|971039|33|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NC_014825 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL02, complete sequence) position: , mismatch: 9, identity: 0.727

cgcacgcgggttgcgtaacggatatacgacagc	CRISPR spacer
gttcagcggtttgcgtaaaggatatacgaccac	Protospacer
  .  **** ******** *********** .*

70. spacer 3.17|971284|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017833 (Butyrivibrio hungatei strain MB2003 plasmid pNP6, complete sequence) position: , mismatch: 9, identity: 0.719

acacgccagccaacaatattaattttgtcgtc	CRISPR spacer
gcctgacagccaaaaacattaattttgtcagg	Protospacer
.* .* ******* **.************.  

71. spacer 2.5|953193|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MN694012 (Marine virus AFVG_250M887, complete genome) position: , mismatch: 10, identity: 0.688

cttgtcggcgttgctcacgtgactatttcgca	CRISPR spacer
ggtacttacgttgctcacgtaactattacgcc	Protospacer
  *... .************.****** *** 

72. spacer 2.7|953315|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU140623 (Sinorhizobium sp. M14 plasmid pSinB, complete sequence) position: , mismatch: 10, identity: 0.688

ccgcagaacgccgcatcgccgaactggacaaa	CRISPR spacer
cgatcgaacagcgcatcgccgaactggaagcg	Protospacer
* .. ****. ***************** . .

73. spacer 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010682 (Phaeobacter piscinae strain P14 plasmid pP14_a, complete sequence) position: , mismatch: 10, identity: 0.688

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
cggtgccccaggatattgcgccgcgcatgccg	Protospacer
  **** **.****************  .  .

74. spacer 2.12|953620|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010644 (Phaeobacter piscinae strain P36 plasmid pP36_a, complete sequence) position: , mismatch: 10, identity: 0.688

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
cggtgccccaggatattgcgccgcgcacgccg	Protospacer
  **** **.****************  .  .

75. spacer 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to KX349325 (Cyanophage S-RIM12 isolate W1_24_0910, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .  

76. spacer 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to KX349322 (Cyanophage S-RIM12 isolate Sn_31_0910, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .  

77. spacer 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to KX349320 (Cyanophage S-RIM12 isolate RW_29_1109, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .  

78. spacer 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to KX349310 (Cyanophage S-RIM12 isolate RW_01_0310, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .  

79. spacer 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to KX349321 (Cyanophage S-RIM12 isolate Sn_07_0910, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .  

80. spacer 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to KX349324 (Cyanophage S-RIM12 isolate W1_12_0610, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .  

81. spacer 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to KX349314 (Cyanophage S-RIM12 isolate RW_07_1112, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .  

82. spacer 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to KX349316 (Cyanophage S-RIM12 isolate RW_22_0110, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .  

83. spacer 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to KJ019063 (Synechococcus phage ACG-2014c isolate Syn7803C97, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
cagaagaatttactggtgtcactggtgagttt	Protospacer
  * ********* ********** **  .  

84. spacer 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to KJ019027 (Synechococcus phage ACG-2014c isolate Syn7803C43, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
cagaagaatttactggtgtcactggtgagttt	Protospacer
  * ********* ********** **  .  

85. spacer 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to KX349315 (Cyanophage S-RIM12 isolate RW_14_0101, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .  

86. spacer 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to KX349317 (Cyanophage S-RIM12 isolate RW_25_0210, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .  

87. spacer 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NC_019444 (Synechococcus phage S-MbCM6, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
cagaagaatttactggtgtcactggtgagttt	Protospacer
  * ********* ********** **  .  

88. spacer 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to KJ019128 (Synechococcus phage ACG-2014c isolate Syn7803US88, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .  

89. spacer 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to NC_015285 (Prochlorococcus phage Syn33, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .  

90. spacer 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to KX349309 (Cyanophage S-RIM12 isolate Np_22_1112, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .  

91. spacer 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to KX349319 (Cyanophage S-RIM12 isolate RW_28_1109, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .  

92. spacer 2.17|953925|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to KX349318 (Cyanophage S-RIM12 isolate RW_27_0310, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .  

93. spacer 3.10|970855|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MN694051 (Marine virus AFVG_250M33, complete genome) position: , mismatch: 10, identity: 0.688

gacgcttcacctgcatcaaattctcctccagt	CRISPR spacer
tagccttcaccagcatcaaattcttctaagcg	Protospacer
 *  ******* ************.**  .  

94. spacer 3.20|971467|32|NZ_CP011396|PILER-CR,CRISPRCasFinder,CRT matches to MK249150 (Blackfly microvirus SF02 isolate 046, complete genome) position: , mismatch: 10, identity: 0.688

ttaatgcggtcattggtcatgtctctaaaaga	CRISPR spacer
gccatgccgtcattggtgatgtctctttcgaa	Protospacer
 . **** ********* ********   ..*

95. spacer 3.27|971895|32|NZ_CP011396|CRISPRCasFinder,CRT matches to CP054927 (Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

aggggcgttccgcagtcggcaagggctgaaaa	CRISPR spacer
tcgggcatcccgcagtcggcaagggtgcggcg	Protospacer
  ****.*.****************.  .. .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1675013 : 1684184 10 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_2 1853797 : 1864413 12 Morganella_phage(25.0%) NA NA
DBSCAN-SWA_3 4245193 : 4292265 48 Burkholderia_phage(36.36%) tail,plate,tRNA NA
DBSCAN-SWA_4 4407835 : 4473128 73 Cronobacter_phage(52.94%) tail,portal,capsid,protease,holin,integrase,head attL 4437699:4437743|attR 4468503:4468547
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage