CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP012346	Salmonella enterica subsp. enterica serovar Panama str. ATCC 7378 chromosome, complete genome	3 crisprs	PD-DExK,WYL,csa3,cas3,DEDDh,DinG	0	2	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012346_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012346_1

178335-178413

Orphan

Consensus_repeat	Method
TTGATATTAGCCTGGTGGTAATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012346_1

>merge|NZ_CP012346|1|178335-178413|CRISPRCasFinder
TTGATATTAGCCTGGTGGTAATGCCCGATGGCACTTCGCTTATAGGGCCTACCGTATTGATATCAGCCTGGTGGTAATG

>NZ_CP012346|1|1|178335-178413|CRISPRCasFinder
TTGATATTAGCCTGGTGGTAATG	CCCGATGGCACTTCGCTTATAGGGCCTACCGTA
TTGATATCAGCCTGGTGGTAATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012346.1\|WP_023137414.1\|181699_182395_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|183459
NZ_CP012346.1\|WP_001062558.1\|165777_165987_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012346.1\|WP_023212608.1\|167952_169869_-\|PTS-mannitol-transporter-subunit-IICBA	unknown	unknown	gnl\|CDD\|237905
NZ_CP012346.1\|WP_023212605.1\|188290_189223_-\|DUF4862-family-protein	unknown	unknown	gnl\|CDD\|374399
NZ_CP012346.1\|WP_023137415.1\|178516_180472_-\|glycoside-hydrolase-family-127-protein	unknown	unknown	gnl\|CDD\|226063
NZ_CP012346.1\|WP_000074063.1\|183900_185397_-\|carbohydrate-kinase	unknown	unknown	gnl\|CDD\|212666
NZ_CP012346.1\|WP_000832313.1\|187678_188152_-\|2,3-diketo-L-gulonate-TRAP-transporter-small-permease-YiaM	unknown	unknown	gnl\|CDD\|182129
NZ_CP012346.1\|WP_000089520.1\|183253_183904_-\|3-keto-L-gulonate-6-phosphate-decarboxylase-UlaD	unknown	unknown	gnl\|CDD\|183962
NZ_CP012346.1\|WP_000766675.1\|170344_170953_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|182405
NZ_CP012346.1\|WP_000183988.1\|176748_178287_+\|aldehyde-dehydrogenase-AldB	unknown	unknown	gnl\|CDD\|143434
NZ_CP012346.1\|WP_000766331.1\|185400_186387_-\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270397
NZ_CP012346.1\|WP_000645385.1\|166583_167732_-\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
NZ_CP012346.1\|WP_000582383.1\|172439_174290_+\|selenocysteine-specific-translation-elongation-factor	unknown	unknown	gnl\|CDD\|182508
NZ_CP012346.1\|WP_000301820.1\|186398_187676_-\|2,3-diketo-L-gulonate-transporter-large-permease-YiaN	unknown	unknown	gnl\|CDD\|185020
NZ_CP012346.1\|WP_000193201.1\|165996_166587_-\|MltR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236817
NZ_CP012346.1\|WP_001244036.1\|182388_183249_-\|L-ribulose-5-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|237308
NZ_CP012346.1\|WP_000891812.1\|180735_181551_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227095
NZ_CP012346.1\|WP_023212606.1\|174475_175627_+\|L-threonine-dehydrogenase	unknown	unknown	gnl\|CDD\|182118
NZ_CP012346.1\|WP_001188271.1\|175698_176580_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP012346.1\|WP_023212607.1\|171051_172443_+\|L-seryl-tRNA(Sec)-selenium-transferase	unknown	unknown	gnl\|CDD\|235278

Protein	Function_ID	Function_description	E-value
NZ_CP012346.1\|WP_023137414.1\|181699_182395_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|183459	PRK12347, sgbE, L-ribulose-5-phosphate 4-epimerase; Reviewed.	6.13201e-177
NZ_CP012346.1\|WP_023212605.1\|188290_189223_-\|DUF4862-family-protein	gnl\|CDD\|374399	pfam16154, DUF4862, Domain of unknown function (DUF4862). This family consists of uncharacterized proteins around 300 residues in length and is mainly found in various high GC Gram+ bacteria, but also in several pathogenic and non-pathogenic enterobacteria (Salmonella, E. coli). Distant homology analysis suggests this could be a branch of Xylose isomerase-like TIM barrel family, but this prediction is currently not confirmed by experiment.	1.87715e-118
NZ_CP012346.1\|WP_023212608.1\|167952_169869_-\|PTS-mannitol-transporter-subunit-IICBA	gnl\|CDD\|237905	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional.	0
NZ_CP012346.1\|WP_023137415.1\|178516_180472_-\|glycoside-hydrolase-family-127-protein	gnl\|CDD\|226063	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP012346.1\|WP_000074063.1\|183900_185397_-\|carbohydrate-kinase	gnl\|CDD\|212666	cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases. This subfamily is composed of bacterial L-xylulose kinases (L-XK, also known as L-xylulokinase; EC 2.7.1.53), which catalyze the ATP-dependent phosphorylation of L-xylulose to produce L-xylulose 5-phosphate and ADP. The presence of Mg2+ might be required for catalytic activity. Some uncharacterized sequences are also included in this subfamily. L-XKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	0
NZ_CP012346.1\|WP_000832313.1\|187678_188152_-\|2,3-diketo-L-gulonate-TRAP-transporter-small-permease-YiaM	gnl\|CDD\|182129	PRK09877, PRK09877, 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional.	1.23224e-98
NZ_CP012346.1\|WP_000089520.1\|183253_183904_-\|3-keto-L-gulonate-6-phosphate-decarboxylase-UlaD	gnl\|CDD\|183962	PRK13305, sgbH, 3-keto-L-gulonate-6-phosphate decarboxylase UlaD.	4.61819e-146
NZ_CP012346.1\|WP_000766675.1\|170344_170953_+\|glutathione-S-transferase	gnl\|CDD\|182405	PRK10357, PRK10357, putative glutathione S-transferase; Provisional.	2.71219e-154
NZ_CP012346.1\|WP_000183988.1\|176748_178287_+\|aldehyde-dehydrogenase-AldB	gnl\|CDD\|143434	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.	0
NZ_CP012346.1\|WP_000766331.1\|185400_186387_-\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270397	cd13679, PBP2_TRAP_YiaO_like, Substrate-binding domain of 2,3-diketo-L-gulonate-binding Tripartite ATP-independent Periplasmic transport system and related proteins; the type 2 periplasmic-binding protein fold. This subfamily includes the solute receptor protein YiaO of TRAP transport system. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.88867e-149
NZ_CP012346.1\|WP_000645385.1\|166583_167732_-\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
NZ_CP012346.1\|WP_000582383.1\|172439_174290_+\|selenocysteine-specific-translation-elongation-factor	gnl\|CDD\|182508	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional.	0
NZ_CP012346.1\|WP_000301820.1\|186398_187676_-\|2,3-diketo-L-gulonate-transporter-large-permease-YiaN	gnl\|CDD\|185020	PRK15060, PRK15060, 2,3-diketo-L-gulonate transporter large permease YiaN.	0
NZ_CP012346.1\|WP_000193201.1\|165996_166587_-\|MltR-family-transcriptional-regulator	gnl\|CDD\|236817	PRK11001, mtlR, MltR family transcriptional regulator.	1.37879e-106
NZ_CP012346.1\|WP_001244036.1\|182388_183249_-\|L-ribulose-5-phosphate-3-epimerase	gnl\|CDD\|237308	PRK13210, PRK13210, L-ribulose-5-phosphate 3-epimerase.	0
NZ_CP012346.1\|WP_000891812.1\|180735_181551_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	1.11433e-21
NZ_CP012346.1\|WP_023212606.1\|174475_175627_+\|L-threonine-dehydrogenase	gnl\|CDD\|182118	PRK09860, PRK09860, putative alcohol dehydrogenase; Provisional.	0
NZ_CP012346.1\|WP_001188271.1\|175698_176580_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	2.99633e-77
NZ_CP012346.1\|WP_023212607.1\|171051_172443_+\|L-seryl-tRNA(Sec)-selenium-transferase	gnl\|CDD\|235278	PRK04311, PRK04311, selenocysteine synthase; Provisional.	0

>NZ_CP012346.1|WP_000183988.1|176748_178287_+|aldehyde-dehydrogenase-AldB
MTNNPPSTRIQPGEYGYPLKLKARYDNFIGGDWVAPADGEYYQNLTPVTGQPLCEVASSGKKDIDLALDAAHKAKDKWAHTSVQDRAAILFKIADRMEQNLELLATAETWDNGKPIRETSAADVPLAIDHFRYFASCIRAQEGGISEVDSETVAYHFHEPLGVVGQIIPWNFPLLMASWKMAPALAAGNCVVLKPARLTPLSVLLLMEVIGDLLPPGVVNVVNGAGGEIGEYLATSKRIAKVAFTGSTEVGQQIMQYATQNIIPVTLELGGKSPNIFFADVMDEEDAFFDKALEGFALFAFNQGEVCTCPSRALVQESIYERFMERAIRRVESIRSGNPLDSGTQMGAQVSHGQLETILNYIDIGKKEGADILTGGRRKELDGELKEGYYLEPTILFGKNNMRVFQEEIFGPVLAVTTFKTMEEALEIANDTQYGLGAGVWSRNGNLAYKMGRGIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRETHKMMLEHYQQTKCLLVSYSDKPLGLF
>NZ_CP012346.1|WP_001188271.1|175698_176580_-|ROK-family-protein
MQQYIGIDVGGTHVKYGVINSDGEELTHHQFDTPEDASTFTRKWQDVVARCQQDYDIAAIGVSFPGHINPHNGHAAKAGALAYLDDVNLMELFSGLTDLPLVVENDANCAALGEMWRGAGQHYDNLVCITIGTGIGGGIIVGRELYRGAHFHAGEFGVMPVGNNGESMHKIASTSGLMASCRQALALPAEEMPPADVIFERMATDVHLREAVNDWARYLSRGVYSVISMFDPGVVLIGGGISEQEKLYPLLTRHLETFEMWEALQVPIQPCQLGNQAGRLGAVWLAQQKLDRS
>NZ_CP012346.1|WP_023212606.1|174475_175627_+|L-threonine-dehydrogenase
MAASTFFIPSVNVIGADSLKNAMNTMAEYGFRRTLIVTDAMLTKLGVAGDIQKALQERDIFSVIYDGTQPNPTTSNVAAGLKLLKENGCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCIITDEERHIKMAIVDKHVTPLLSVNDSSLMVGMPKSLTAATGMDALTHAIEAYVSVAATPITDACALKAVTMIAENLVVAVEEGSNVQAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGGFYNLPHGVCNAVLLPHVQVFNSQVAAARLRDCAAAMGVDVSDMSEAEGAQACVAAIRQLSQKVNIPAGLRELNVKEEDIPVLATNALKDACGLTNPIQATHDEIVEIYRAAM
>NZ_CP012346.1|WP_000582383.1|172439_174290_+|selenocysteine-specific-translation-elongation-factor
MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLQILQLTGNLQLTVALTKADRVDEARIGEVREEVLAALDNYGFADTVLFVTAANEGRGIAELRAHLQQLPARLHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRSLHAQNQPTDHAHAGQRIALNIAGDAEKEQLNRGDWLLSDAPVGEAFSRVIVSLALHAPLSQWQPLHIHHAASHVTGRVSLLEGGLAELIFDTPLWLADNDRLVLRDISARATLAGARVVTLKAPRRGKRKPDYLHWLSTLAAAQDDSAALAIHLERGAVNLPDFGWARQLNPLGMRQLIEQHGFIQAGDNLLSAPVAARWQRKILDTLATYHEQHRDEPGPGRERLRRMALPMEDEALVLMLIERMRDDGLIHSHHGWLHLPDHKAGFSDEQQAVWQKVEPLFGDEPWWVRDLAKETGTEEQLMRLVLRQAAQQGIITAIVKDRYYRNDRIVAFANMIRELDQERGSTCAADFRDRLNVGRKLAIQILEYFDRIGFTRRRGNDHLLRDALLFPQKE
>NZ_CP012346.1|WP_023212607.1|171051_172443_+|L-seryl-tRNA(Sec)-selenium-transferase
MTSETRTLYSQLPAIDRLLHDSAFLSLRDRYGHTQVVDLLRRMLDDARDVIRNTQTLPDWYADWAQEAKLRLENAAQSALRPVINLTGTVLHTNLGRALQAQEAIEAVTQAMRAPVTLEYDLDGAGRGHRDRALATLLCRITGAEDACIVNNNAAAVLLMLAATASGKEVAVSRGELVEIGGAFRIPDVMRQAGCTLHEVGTTNRTHAKDYRQAVNENTGLLMKVHTSNYSIEGFTKTVEEAELAEIGRELDIPVVADLGSGSLVDLSQYGLPKEPMPQQLIAAGVSLVSFSGDKLLGGPQAGIIVGKKAMIAQLQSHPLKRALRADKMTLAALEATLRLYLHPEALAEKLPTLRLLTRSEASIREQAQRLQARLAARYGDEFALEVKPCLSQIGSGSLPVDRLPSAAMTFTPHDGRGSRLEALAARWRTLPVPVIGRIYDGRLWLDMRCLEDESRFMEMMLK
>NZ_CP012346.1|WP_000766675.1|170344_170953_+|glutathione-S-transferase
MKLIGSYTSPFVRKISILLLEKGITFEFINELPYEADNGVAQYNPLGKVPALVTEKGEYWFDSPIIAEYIELLDIAPAMLPRDPMAALKVRQLEALADGIMDAALVSVREQARPAAQQSETELLRQREKINRSLDMLESYLSDGTLKTDTVNLATIAIACAVGYLNFRRVAPGWCVSRPHLVKLVETLFQRESFARTEAPKA
>NZ_CP012346.1|WP_023212608.1|167952_169869_-|PTS-mannitol-transporter-subunit-IICBA
MSSDIKIKVQSFGRFLSNMVMPNIGAFIAWGIITALFIPTGWLPNETLAKLVGPMITYLLPLLIGYTGGRLVGGERGGVVGAITTMGVIVGADMPMFLGSMIAGPLGGYCIKKFDSWVDGKIKSGFEMLVNNFSAGIIGMILAILAFLGIGPAVEVLSKILAAGVNFMVAHDMLPLASIFVEPAKILFLNNAINHGIFSPLGIQQSHEMGKSIFFLIEANPGPGMGVLLAYMFFGRGSAKQSAGGAAIIHFLGGIHEIYFPYVLMNPRLILAVILGGMTGVFTLTILNGGLVSPASPGSILAVLAMTPKGAYFANIAAIVAAMAVSFLVSAILLKTSKVKEEDDIEAATRRMHDMKAESKGASPLAAGDVTNDLSHVRKIIVACDAGMGSSAMGAGVLRKKVQDAGLSQISVTNSAINNLPPDVDLVITHRDLTERAMRQVPQAQHISLTNFLDSGLYTSLTERLVAAQRHNTNEEKVRDHLKDSFEEGDNNLFKLGAENIFLGRKAANKEEAIRFAGEQLVKGGYVEPEYVEAMLDREKLTPTYLGESIAVPHGTVEAKDRVLKTGVVFCQYPEGVRFGEEEDDIARLVIGIAARNNEHIQVITSLTNALDDESVIERLAHTTSVDEVLELLAGKKA
>NZ_CP012346.1|WP_000645385.1|166583_167732_-|mannitol-1-phosphate-5-dehydrogenase
MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARHSYQVHVVGENEQVDTVSGVNAVSSIGDDVVDLIAHVDLITTAVGPVVLERIAPAIAKGLVKRKAQGVDAPLNIIACENMVRGTTQLKGHVMNALADGDKAWVEQHVGFVDSAVDRIVPPSASATHDPLEVTVETFSEWIVDKTQFKGALPTIPGMELTDNLMAFVERKLFTLNTGHAITAYLGKLAGHQTIRDAILDESIRAVVKGAMEESGAVLIKRYGFDADKHAAYIQKILGRFENPYLKDDVERVGRQPLRKLSAGDRLIKPLLGTLEYGLPHVNLVKGIAAAMHFRSEEDPQAQELAALIDEKGPQAALAQISGLDANSDVVAEAVNAYNATK
>NZ_CP012346.1|WP_000193201.1|165996_166587_-|MltR-family-transcriptional-regulator
MTQNPAQVSLRPNNRLSDMQAIMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNILVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVLSRTEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVMALPPPPHFDTSDAALYAMQIQRYQQAVRSTMVLSLTELISKISLKKAFQK
>NZ_CP012346.1|WP_001062558.1|165777_165987_+|hypothetical-protein
MAKIGENVPLLIDKAVDFMASSQAFREYLNKTPPRDYVPSEVPSESAPIYLQRLEYYRRLYRPKEEERG
>NZ_CP012346.1|WP_023137415.1|178516_180472_-|glycoside-hydrolase-family-127-protein
MNVLEVDLHKLTVSDPFLGQYQQLVRDVVIPYQWDALNDRIPEAEPSHAIENFRIAAGQQTGDFYGMVFQDSDVAKWLEAVAWSLCQKPDPALEKTADEVIELVAAAQCDDGYLNTYFTAKAPQERWSNLAECHELYCAGHLIEAGVAFFQATGKRRLLDVVCRLADHIDSTFGPGENQLHGYPGHPEIELALMRLYEVTEQPRYMTLASYFIGQRGAQPHFYDEEYEKRGQTSYWHTYGPAWMVKDKAYSQAHLPISQQQTAIGHAVRFVYLMTGVAHLARLSNDEGKRQDCLRLWKNMAQRQLYITGGIGSQSSGEAFSCDYDLPNDSVYAESCASIGLMMFARRMLEMEADSQYADVMERALYNTVLGGMALDGKHFFYVNPLEVHPKSLKFNHIYDHVKPIRQRWFGCACCPPNIARVLTSLGHYIYTPRADALYINMYVGNSMEIPVENGALKLRIGGNYPWHEQVKIAIDSVQPVRHTLALRLPDWCPEAKVTLNGLEVEQDIRKGYLHIRRTWQEGDTITLTLPMPVRRVYGNPLARHVAGKVAIQRGPLVYCLEQADNGEELHNLWLPKESEFRVFEGKGLFAHKMLIQAEGEKQSAPDAQHQALWHYDNAPSSRQPQTLTFIPWFSWANRGEGEMRIWVNER
>NZ_CP012346.1|WP_000891812.1|180735_181551_+|helix-turn-helix-domain-containing-protein
MLELSITLPIKVQNGGLFISRGIGRHPARRLQSWEIIFVEKGCLKIQEEECVFCVEAGESLLLWPHRRHIGVEEFPTDLKFYWLHFEVKAPDSDPRWLTHLSVPQHTQVADPQALIALFRQFMNEQEKHQRSPALEFIVLLILQQLTVDARQNENAEAAGVSLAWKVQQLIRTHYHLPLSSSVLAKELHCNVDYLGRVYRRVFHLTLTEAIHRQRVREAEKLLISDARSLKEVAERCGFNDVGYFRQIFRKHTGLTPTAWKRRYSKEHVNS
>NZ_CP012346.1|WP_023137414.1|181699_182395_-|L-ribulose-5-phosphate-4-epimerase
MLEQLKAEVLAANLALPAHGLVTFTWGNVSAVDETRKLMVIKPSGVEYEVMTADDMVVVEIANGKIVEGNKKPSSDTATHLALYRRYPQIGGIVHTHSRHATIWSQAGLDLPAWGTTHADYFYGAIPCTRLMTVEEINGEYEYQTGEVIIKTFEERGLDPAQIPAVLVHSHGPFAWGKNAADAVHNAVVLEECAYMGLFSRQLAPQLPDMQPELLNKHYLRKHGANAYYGQ
>NZ_CP012346.1|WP_001244036.1|182388_183249_-|L-ribulose-5-phosphate-3-epimerase
MRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLEWTSAQRASLVNAMLESGVAIPSMCLSAHRRFPFGSRDEAVRQRAREIMTKAIRLARDLGIRTIQLAGYDVYYEEHDEGTQQRFAEGLAWAVEQAAAAQVMLAVEIMDTAFMNSISKWKKWDEMLSSPWFTVYPDVGNLSAWGNDVTAELKLGIDRIAAIHLKDTLPVTGDSPGQFRDVPFGEGCVDFVGIFKTLHELNYRGSFLIEMWTEKSSEPVLEIIQARRWIESRMQEGGFTC
>NZ_CP012346.1|WP_000089520.1|183253_183904_-|3-keto-L-gulonate-6-phosphate-decarboxylase-UlaD
MSRPLLQLALDHTNLEAAQRDVALLQDHVDIVEAGTILCLTEGLSAVKALRAQCPEKIIVADWKVADAGETLAQQAFSAGANWMTIICAAPLATVEKGHAVAQSCGGEIQMELFGNWTLDDARDWYRVGVRQAIYHRGRDAQASGQQWGEADLTRMKALSDIGLELSITGGITPADLPLFRDINVKAFIAGRALAGAAHPAQVAAEFHAQIDAIWG
>NZ_CP012346.1|WP_000074063.1|183900_185397_-|carbohydrate-kinase
MSNYWLGLDCGGSWLKAGLYDGAGREVAVQRLPLHALSPQPGWVERDMTELWQQCASVINKLLAHTGVNGSQIRGLGISAQGKGLFLLDKSDRPLGKAILSSDRRAMEIVQRWQKEAVPQKLYPLTRQTLWTGHPVSLLRWVKENEPQRYAQIGSVMMTHDYLRWCLTGVKGCEESNISESNLYNMATGQYDPRLTEWLGISEIDSALPPVVGSAEICGEITAQAAAITGLTVGTPVVGGLFDVVSTALCAGIEDESTLNAVMGTWAVTSGIAHGLRDHEAHPYVYGRYVNDGQYIVHEASPTSSGNLEWFTAQWGDLSFDEINQAVASLPKAGSDLFFLPFLYGSNAGLEMTCGFYGMQALHTRAHLLQAIYEGVVFSHMTHLNRMRERFTDVCALRVTGGPAHSDVWMQMLADVSGLRIELPQVEETGCFGAALAARVGTGVYRNFREAQRDLRHPVRTLLPDMAAHALYQRKYRQYQHLIEALQGYHARIKEHAL
>NZ_CP012346.1|WP_000766331.1|185400_186387_-|TRAP-transporter-substrate-binding-protein
MKLHVIARSLLIAGLTVFSVSSLAAQSLRFGYETPQTDSQHIAAKKFNELLKEKTNDELTLKLFPDSTLGNAQAMISGVRGGTIDMEMSGSNNFTGLAPVFNLLDVPFLFRDTAHAHKTLDGKVGDELKKSLDSKGLKVLAYWENGWRDVTNSRAPVKTPGDLKGLKIRTNNSPMNIAAFKIFGANPIPMPFSEVYTGLETRTIDAQEHPINVVWSAKFYEVQKYLSLTHHAYSPLLLVINKAKFDALSPQFQEALLSSAKEAGDYQRKLVAEDQQKIIDGMKEAGVEVLTDIDRKAFSDALGSQVRDMFLKDNPQGADLLKAVDEVQ
>NZ_CP012346.1|WP_000301820.1|186398_187676_-|2,3-diketo-L-gulonate-transporter-large-permease-YiaN
MAVVIFLCCLLGGIAIGLPIAWSLLLCGAALMAYLDMFDVQIMAQTLVNGADSFSLLAIPFFVLAGEIMNAGGLSKRIVDLPMKLVGHKPGGLGYVGVIAAMIMASLSGSAVADTAAVAALLVPMMRSANYPINRSVGLIASGGIIAPIIPPSIPFIIFGVSSGLSISKLFMAGIAPGIMMGAALMLTWWWQAGRLNLPSQPKATPREIWQSLVSGIWALFLPVIIIGGFRSGLFTPTEAGAVAAFYALFVAVVIYRELTFSSLYHVLVNAAKTTSVVMFLVAAAQVSAWLITIAELPMMVSDLLQPLVDSPRLLFIVIMISIMVVGMVMDLTPTVLILTPVLLPLVKEANIDPIYFGVMFIINCSIGLITPPVGNVLNVISGVAKLKFDDAVRGVFPYVVVLMSLLILFIFIPELIITPLKWIN
>NZ_CP012346.1|WP_000832313.1|187678_188152_-|2,3-diketo-L-gulonate-TRAP-transporter-small-permease-YiaM
MKRVLEGILAVLIAVLSCIVFINVILRYGFESSILSVDELSRYLFVWLTFIGAIVAFMDNAHVQVTFVVEKLSPANQRRLSLLTHSLILLLCIALGWGSLQKALQDWSDHSPILGLPIGLMYIACLPTSVAIALIELRRLYHLITRNDSFQQPQQGA
>NZ_CP012346.1|WP_023212605.1|188290_189223_-|DUF4862-family-protein
MKNNTGYIIGAYPCAPSFHQKSEEEETEFWRQLSDTPDIRGLEQPCLEHLHPLGDEWLLRHTPGNWQIVVTAIMETMRRRSENGGFGLASSDEEQRKACVEYYRHLYQKINKLNAKTPGKVIALELHAAPLAGNPNVAQATDAFARSLKEIANWDWSCDLVLEHCDAMTGPAPRKGFLPLVNVLETIADYDISVCINWARSAIEGRDTSLPLIHTQQAKQAGKLGALMFSGTTLDGEYGEWQDLHAPFVPFCPQSLMTEKHVKELITAAAPELLLFTGIKLLEINASADINHRINILRDGINMMKKATRS

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Crispr_ID: NZ_CP012346_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012346_2

936049-936626

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

9 spacers

The CRISPR arrays of NZ_CP012346_2

>merge|NZ_CP012346|2|936049-936626|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCCCAGAAAAGTTTGTTTAGGCAATCAAGCCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTATGAGGGCGCGCAACAGGCGATGCGTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGATTTACTAAGGTCAACAAGGGATTGAATTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCTCATGCGCAGCACTGGATCGAGAGCGAAGGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTGAGAACAGGGTGCATGGGAGGGAATAATTGTGTTTCCCGCGCCAGCGGGGATAAACCGCGTTACAGCCAGTTCATGGAAAGTTTCAGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGATCCCAAAACATCTTTCCCTGGTTCCTCTCAGGTGTTCGCCGCGCCAGCGGGGATAAACCGGGGATCGCGTTGGCGGTCGCATCCGTTGCCGTGTGTTACCCGCGTCAGCGGGGATAAACCGTACCAACAATTCAGCGTTACGCCAACGGTAACGTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP012346|2|1|936049-936443|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTATGAGGGCGCGCAACAGGCGATGCGTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTTACTAAGGTCAACAAGGGATTGAATTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCATGCGCAGCACTGGATCGAGAGCGAAGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTGAGAACAGGGTGCATGGGAGGGAATAATT
GTGTTTCCCGCGCCAGCGGGGATAAACCG	CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP012346|2|2|936049-936626|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTATGAGGGCGCGCAACAGGCGATGCGTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTTACTAAGGTCAACAAGGGATTGAATTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCATGCGCAGCACTGGATCGAGAGCGAAGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTGAGAACAGGGTGCATGGGAGGGAATAATT
GTGTTTCCCGCGCCAGCGGGGATAAACCG	CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG
GTGTTCGCCGCGCCAGCGGGGATAAACCG	GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT
GTGTTACCCGCGTCAGCGGGGATAAACCG	TACCAACAATTCAGCGTTACGCCAACGGTAAC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP012346|2|1|936049-936626|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTATGAGGGCGCGCAACAGGCGATGCGTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTTACTAAGGTCAACAAGGGATTGAATTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCATGCGCAGCACTGGATCGAGAGCGAAGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTGAGAACAGGGTGCATGGGAGGGAATAATT
GTGTTTCCCGCGCCAGCGGGGATAAACCG	CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG
GTGTTCGCCGCGCCAGCGGGGATAAACCG	GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT
GTGTTACCCGCGTCAGCGGGGATAAACCG	TACCAACAATTCAGCGTTACGCCAACGGTAAC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012346.1\|WP_023212181.1\|945846_946893_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP012346.1\|WP_000080400.1\|941993_942728_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP012346.1\|WP_023212185.1\|927207_929442_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP012346.1\|WP_072196359.1\|929526_929883_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NZ_CP012346.1\|WP_001667037.1\|936723_937521_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP012346.1\|WP_000210864.1\|931926_933564_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP012346.1\|WP_001199956.1\|935080_935752_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP012346.1\|WP_001290665.1\|940205_941918_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP012346.1\|WP_000186400.1\|923046_925803_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP012346.1\|WP_000210909.1\|938406_940206_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP012346.1\|WP_000036734.1\|933646_934945_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP012346.1\|WP_001145533.1\|942815_943769_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP012346.1\|WP_001173661.1\|949487_950093_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP012346.1\|WP_023212182.1\|937608_937971_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP012346.1\|WP_023212186.1\|925860_927156_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP012346.1\|WP_000372384.1\|947143_948052_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP012346.1\|WP_000107113.1\|920442_921783_+\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NZ_CP012346.1\|WP_000210451.1\|930898_931699_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP012346.1\|WP_001092259.1\|948061_949501_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP012346.1\|WP_000706486.1\|921860_923003_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840

Protein	Function_ID	Function_description	E-value
NZ_CP012346.1\|WP_023212181.1\|945846_946893_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP012346.1\|WP_000080400.1\|941993_942728_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.30149e-138
NZ_CP012346.1\|WP_023212185.1\|927207_929442_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP012346.1\|WP_072196359.1\|929526_929883_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	1.09987e-19
NZ_CP012346.1\|WP_001667037.1\|936723_937521_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	2.4605e-101
NZ_CP012346.1\|WP_000210864.1\|931926_933564_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP012346.1\|WP_001199956.1\|935080_935752_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
NZ_CP012346.1\|WP_001290665.1\|940205_941918_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP012346.1\|WP_000186400.1\|923046_925803_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP012346.1\|WP_000210909.1\|938406_940206_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP012346.1\|WP_000036734.1\|933646_934945_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP012346.1\|WP_001145533.1\|942815_943769_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP012346.1\|WP_001173661.1\|949487_950093_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.53293e-145
NZ_CP012346.1\|WP_023212182.1\|937608_937971_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	1.25795e-57
NZ_CP012346.1\|WP_023212186.1\|925860_927156_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP012346.1\|WP_000372384.1\|947143_948052_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP012346.1\|WP_000107113.1\|920442_921783_+\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NZ_CP012346.1\|WP_000210451.1\|930898_931699_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP012346.1\|WP_001092259.1\|948061_949501_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP012346.1\|WP_000706486.1\|921860_923003_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0

>NZ_CP012346.1|WP_001199956.1|935080_935752_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP012346.1|WP_000036734.1|933646_934945_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP012346.1|WP_000210864.1|931926_933564_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>NZ_CP012346.1|WP_000210451.1|930898_931699_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP012346.1|WP_072196359.1|929526_929883_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLLALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NZ_CP012346.1|WP_023212185.1|927207_929442_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWVASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NZ_CP012346.1|WP_023212186.1|925860_927156_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLVPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP012346.1|WP_000186400.1|923046_925803_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP012346.1|WP_000706486.1|921860_923003_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIVQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVGVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>NZ_CP012346.1|WP_000107113.1|920442_921783_+|glucarate-dehydratase
MSTQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTAVRNQFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDEQCDWYRLRHEEAMTPETVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAKRFPQARVTLDPNGAWSLNEAISIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGMVQVPTKPGLGVELDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR
>NZ_CP012346.1|WP_001667037.1|936723_937521_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTMWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP012346.1|WP_023212182.1|937608_937971_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDILGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>NZ_CP012346.1|WP_000210909.1|938406_940206_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>NZ_CP012346.1|WP_001290665.1|940205_941918_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKVKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP012346.1|WP_000080400.1|941993_942728_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNVQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP012346.1|WP_001145533.1|942815_943769_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDGCSRNILLT
>NZ_CP012346.1|WP_023212181.1|945846_946893_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPAPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP012346.1|WP_000372384.1|947143_948052_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP012346.1|WP_001092259.1|948061_949501_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEAYAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP012346.1|WP_001173661.1|949487_950093_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCCDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS

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Crispr_ID: NZ_CP012346_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012346_3

945743-945830

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012346_3

>merge|NZ_CP012346|3|945743-945830|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCGCCTTAACGGATTAGGTAGTAACCTGAAACAGGGTGTTCCCCGCGCCAGCGGGGATAAAC

>NZ_CP012346|3|3|945743-945830|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGCCTTAACGGATTAGGTAGTAACCTGAAACAGG
GTGTTCCCCGCGCCAGCGGGGATAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012346.1\|WP_000741649.1\|950987_951698_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP012346.1\|WP_023212181.1\|945846_946893_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP012346.1\|WP_001173661.1\|949487_950093_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP012346.1\|WP_001118109.1\|950110_950467_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP012346.1\|WP_001290665.1\|940205_941918_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP012346.1\|WP_001667037.1\|936723_937521_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP012346.1\|WP_000210864.1\|931926_933564_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP012346.1\|WP_001199956.1\|935080_935752_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP012346.1\|WP_000080400.1\|941993_942728_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP012346.1\|WP_000210909.1\|938406_940206_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP012346.1\|WP_000210451.1\|930898_931699_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP012346.1\|WP_001145533.1\|942815_943769_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP012346.1\|WP_000134246.1\|952173_953223_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP012346.1\|WP_023212182.1\|937608_937971_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP012346.1\|WP_000372384.1\|947143_948052_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP012346.1\|WP_001219244.1\|951697_952177_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP012346.1\|WP_001221538.1\|953203_953965_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP012346.1\|WP_000036734.1\|933646_934945_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP012346.1\|WP_001092259.1\|948061_949501_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP012346.1\|WP_000517480.1\|950657_950969_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156

Protein	Function_ID	Function_description	E-value
NZ_CP012346.1\|WP_000741649.1\|950987_951698_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
NZ_CP012346.1\|WP_023212181.1\|945846_946893_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP012346.1\|WP_001173661.1\|949487_950093_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.53293e-145
NZ_CP012346.1\|WP_001118109.1\|950110_950467_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
NZ_CP012346.1\|WP_001290665.1\|940205_941918_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP012346.1\|WP_001667037.1\|936723_937521_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	2.4605e-101
NZ_CP012346.1\|WP_000210864.1\|931926_933564_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP012346.1\|WP_001199956.1\|935080_935752_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
NZ_CP012346.1\|WP_000080400.1\|941993_942728_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.30149e-138
NZ_CP012346.1\|WP_000210909.1\|938406_940206_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP012346.1\|WP_000210451.1\|930898_931699_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP012346.1\|WP_001145533.1\|942815_943769_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP012346.1\|WP_000134246.1\|952173_953223_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP012346.1\|WP_023212182.1\|937608_937971_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	1.25795e-57
NZ_CP012346.1\|WP_000372384.1\|947143_948052_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP012346.1\|WP_001219244.1\|951697_952177_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_CP012346.1\|WP_001221538.1\|953203_953965_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP012346.1\|WP_000036734.1\|933646_934945_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP012346.1\|WP_001092259.1\|948061_949501_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP012346.1\|WP_000517480.1\|950657_950969_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64

>NZ_CP012346.1|WP_001145533.1|942815_943769_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDGCSRNILLT
>NZ_CP012346.1|WP_000080400.1|941993_942728_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNVQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP012346.1|WP_001290665.1|940205_941918_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKVKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP012346.1|WP_000210909.1|938406_940206_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>NZ_CP012346.1|WP_023212182.1|937608_937971_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDILGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>NZ_CP012346.1|WP_001667037.1|936723_937521_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTMWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP012346.1|WP_001199956.1|935080_935752_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP012346.1|WP_000036734.1|933646_934945_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP012346.1|WP_000210864.1|931926_933564_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>NZ_CP012346.1|WP_000210451.1|930898_931699_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP012346.1|WP_023212181.1|945846_946893_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPAPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP012346.1|WP_000372384.1|947143_948052_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP012346.1|WP_001092259.1|948061_949501_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEAYAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP012346.1|WP_001173661.1|949487_950093_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCCDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP012346.1|WP_001118109.1|950110_950467_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP012346.1|WP_000517480.1|950657_950969_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP012346.1|WP_000741649.1|950987_951698_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP012346.1|WP_001219244.1|951697_952177_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP012346.1|WP_000134246.1|952173_953223_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP012346.1|WP_001221538.1|953203_953965_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012346_2	2.8\|936505\|32\|NZ_CP012346\|CRISPRCasFinder,CRT	936505-936536	32	NZ_CP041606	Streptomyces sp. S1D4-14 plasmid pS1D4-14.2, complete sequence	6595-6626	6	0.812
NZ_CP012346_2	2.8\|936505\|32\|NZ_CP012346\|CRISPRCasFinder,CRT	936505-936536	32	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	343727-343758	7	0.781
NZ_CP012346_2	2.1\|936078\|32\|NZ_CP012346\|PILER-CR,CRISPRCasFinder,CRT	936078-936109	32	MK605244	Nodularia phage vB_NspS-kac65v162, complete genome	141954-141985	8	0.75
NZ_CP012346_2	2.1\|936078\|32\|NZ_CP012346\|PILER-CR,CRISPRCasFinder,CRT	936078-936109	32	MK605242	Nodularia phage vB_NspS-kac65v151, complete genome	141539-141570	8	0.75
NZ_CP012346_2	2.1\|936078\|32\|NZ_CP012346\|PILER-CR,CRISPRCasFinder,CRT	936078-936109	32	MK605243	Nodularia phage vB_NspS-kac65v161, complete genome	141656-141687	8	0.75
NZ_CP012346_2	2.8\|936505\|32\|NZ_CP012346\|CRISPRCasFinder,CRT	936505-936536	32	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	20537-20568	9	0.719
NZ_CP012346_2	2.8\|936505\|32\|NZ_CP012346\|CRISPRCasFinder,CRT	936505-936536	32	NZ_CP038639	Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence	222471-222502	9	0.719
NZ_CP012346_2	2.8\|936505\|32\|NZ_CP012346\|CRISPRCasFinder,CRT	936505-936536	32	MT075871	Klebsiella phage vB_KleS-HSE3, complete genome	29026-29057	9	0.719
NZ_CP012346_2	2.8\|936505\|32\|NZ_CP012346\|CRISPRCasFinder,CRT	936505-936536	32	MN694675	Marine virus AFVG_250M635, complete genome	6608-6639	10	0.688

1. spacer 2.8|936505|32|NZ_CP012346|CRISPRCasFinder,CRT matches to NZ_CP041606 (Streptomyces sp. S1D4-14 plasmid pS1D4-14.2, complete sequence) position: , mismatch: 6, identity: 0.812

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
gggatcgcgttggaggtcgcctccgacgactt	Protospacer
************* ****** **** .* * *

2. spacer 2.8|936505|32|NZ_CP012346|CRISPRCasFinder,CRT matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgttggcggtcgcatccgttgccgt-	CRISPR spacer
gggatcgcggtggcggtcgc-ttcgaggaagtt	Protospacer
********* ********** *.**  *  **

3. spacer 2.1|936078|32|NZ_CP012346|PILER-CR,CRISPRCasFinder,CRT matches to MK605244 (Nodularia phage vB_NspS-kac65v162, complete genome) position: , mismatch: 8, identity: 0.75

cccagaaaagtttgtttaggcaatcaagcccc	CRISPR spacer
ccagaaggtgtttgtataggcaaacaagcccc	Protospacer
** ..*.. ****** ******* ********

4. spacer 2.1|936078|32|NZ_CP012346|PILER-CR,CRISPRCasFinder,CRT matches to MK605242 (Nodularia phage vB_NspS-kac65v151, complete genome) position: , mismatch: 8, identity: 0.75

cccagaaaagtttgtttaggcaatcaagcccc	CRISPR spacer
ccagaaggtgtttgtataggcaaacaagcccc	Protospacer
** ..*.. ****** ******* ********

5. spacer 2.1|936078|32|NZ_CP012346|PILER-CR,CRISPRCasFinder,CRT matches to MK605243 (Nodularia phage vB_NspS-kac65v161, complete genome) position: , mismatch: 8, identity: 0.75

cccagaaaagtttgtttaggcaatcaagcccc	CRISPR spacer
ccagaaggtgtttgtataggcaaacaagcccc	Protospacer
** ..*.. ****** ******* ********

6. spacer 2.8|936505|32|NZ_CP012346|CRISPRCasFinder,CRT matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
gggatcgcattgccggtcgcatcgatgacgac	Protospacer
********.*** ********** .* .* ..

7. spacer 2.8|936505|32|NZ_CP012346|CRISPRCasFinder,CRT matches to NZ_CP038639 (Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
gtgatcgccttgccggtcgcatccgccgaaac	Protospacer
* ****** *** ************..*  ..

8. spacer 2.8|936505|32|NZ_CP012346|CRISPRCasFinder,CRT matches to MT075871 (Klebsiella phage vB_KleS-HSE3, complete genome) position: , mismatch: 9, identity: 0.719

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
gggatcgcgtaggcggccgcatcgactacaag	Protospacer
********** *****.****** ..*.* .

9. spacer 2.8|936505|32|NZ_CP012346|CRISPRCasFinder,CRT matches to MN694675 (Marine virus AFVG_250M635, complete genome) position: , mismatch: 10, identity: 0.688

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
tttgctgaattggcggacgcatccattgccgt	Protospacer
   ...* .******* *******.*******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1108781 : 1115533

Enterobacteria_phage(85.71%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001592532.1\|1108781_1109282_-	hypothetical protein	A0A2H4J2P5	uncultured_Caudovirales_phage	8.9e-40	61.3
WP_023209823.1\|1109732_1112066_-	hypothetical protein	Q7M2A8	Enterobacteria_phage	0.0e+00	84.0
WP_023209824.1\|1112080_1112401_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_001216600.1\|1112397_1112625_-	hypothetical protein	NA	NA	NA	NA
WP_000980374.1\|1112621_1113170_-	ash family protein	Q7M2A7	Enterobacteria_phage	9.7e-32	69.4
WP_001673700.1\|1113166_1113433_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	3.6e-32	73.9
WP_000149860.1\|1113970_1114708_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	9.0e-81	64.4
WP_024146987.1\|1114704_1114950_+	hypothetical protein	Q7M294	Enterobacteria_phage	4.1e-30	75.3
WP_023209739.1\|1114966_1115533_+	hypothetical protein	Q7M2A1	Enterobacteria_phage	4.8e-58	64.3

DBSCAN-SWA_2

1118611 : 1185006

Salmonella_phage(87.23%)

portal,lysis,transposase,capsid,head,tRNA,tail,plate,integrase,terminase

attL 1119980:1120027|attR 1155309:1155356

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023209741.1\|1118611_1119799_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	8.4e-105	49.6
1119980:1120027	attL	NA	NA	NA	NA
WP_000834152.1\|1120140_1121352_-	hypothetical protein	E5G6K9	Salmonella_phage	6.3e-108	47.5
WP_001528621.1\|1121348_1122374_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	1.2e-192	93.3
WP_000616881.1\|1122375_1123008_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	3.5e-102	89.5
WP_000102529.1\|1123127_1123376_+	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	6.4e-23	67.9
WP_000460863.1\|1123408_1123918_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.3e-83	92.9
WP_000794278.1\|1124004_1124280_-	hypothetical protein	NA	NA	NA	NA
WP_001528723.1\|1124364_1124559_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	5.3e-25	84.1
WP_000963476.1\|1124522_1124864_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	6.0e-48	84.1
WP_001178763.1\|1124931_1125159_+	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	8.1e-17	64.0
WP_015406335.1\|1125158_1125386_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	2.7e-20	65.3
WP_001528700.1\|1125382_1126240_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	3.5e-153	93.7
WP_015406336.1\|1126230_1128642_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	97.0
WP_015406337.1\|1128797_1128986_+	hypothetical protein	A0A1S6L006	Salmonella_phage	1.0e-25	98.4
WP_015406338.1\|1128997_1129234_+	DinI family protein	A0A1S6L014	Salmonella_phage	1.9e-29	95.7
WP_015406339.1\|1129350_1130028_+	hypothetical protein	NA	NA	NA	NA
WP_001655629.1\|1130369_1131476_+	hypothetical protein	NA	NA	NA	NA
WP_024138933.1\|1131488_1131923_+	hypothetical protein	NA	NA	NA	NA
WP_015406341.1\|1131922_1132588_+	hypothetical protein	NA	NA	NA	NA
WP_001655631.1\|1132657_1133692_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.3e-182	94.8
WP_001098431.1\|1133691_1135458_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.7
WP_001655635.1\|1135600_1136434_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	8.2e-123	91.0
WP_001655636.1\|1136450_1137533_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	8.5e-189	96.3
WP_015406342.1\|1137536_1138190_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	1.3e-110	95.9
WP_000673541.1\|1138285_1138750_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	7.9e-83	96.8
WP_000868184.1\|1138749_1138953_+\|tail	tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
WP_000171565.1\|1138956_1139172_+	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
WP_001069919.1\|1139152_1139662_+	lysozyme	A0A1S6KZY9	Salmonella_phage	2.2e-94	98.8
WP_015406343.1\|1139666_1140062_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	6.5e-62	100.0
WP_001655639.1\|1140043_1140469_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	3.8e-68	99.3
WP_001039961.1\|1140564_1140996_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	1.1e-75	99.3
WP_001655640.1\|1140988_1141435_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.3e-66	90.4
WP_000993749.1\|1141503_1142082_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	3.9e-108	99.5
WP_000177403.1\|1142078_1142438_+\|plate	baseplate assembly protein	E5G6N7	Salmonella_phage	8.0e-59	98.3
WP_001655641.1\|1142424_1143333_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	3.5e-159	99.3
WP_001086807.1\|1143325_1143931_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	4.1e-116	98.0
WP_015406344.1\|1143927_1145733_+\|tail	phage tail protein	E5G6P0	Salmonella_phage	5.9e-227	76.7
WP_015406345.1\|1145732_1146308_+\|tail	tail fiber assembly protein	E5G6P1	Salmonella_phage	2.4e-105	97.9
WP_072209236.1\|1146904_1147153_-\|tail	phage tail protein	A0A1B0VCD0	Salmonella_phage	2.9e-23	69.6
WP_015406347.1\|1147186_1147411_+	helix-turn-helix domain-containing protein	E5G6P5	Salmonella_phage	1.2e-33	97.3
WP_015406348.1\|1147513_1148686_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	5.7e-223	99.5
WP_001207652.1\|1148695_1149211_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	7.9e-92	98.8
WP_001280967.1\|1149265_1149568_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	9.4e-45	99.0
WP_000763317.1\|1149582_1149702_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	8.8e-15	97.4
WP_015406349.1\|1149694_1152502_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	99.5
WP_000980409.1\|1152498_1152984_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	8.3e-67	99.2
WP_001657019.1\|1152980_1154081_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.5e-193	98.6
WP_000972388.1\|1154147_1154366_+	hypothetical protein	Q53ZE7	Salmonella_virus	8.3e-27	76.4
WP_001668082.1\|1154650_1155241_+	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	4.4e-46	75.9
WP_072101449.1\|1155744_1156908_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
1155309:1155356	attR	NA	NA	NA	NA
WP_000196150.1\|1156915_1159096_-	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	9.9e-19	34.0
WP_000533869.1\|1159092_1160502_-	TolC family outer membrane protein	NA	NA	NA	NA
WP_023212153.1\|1160566_1172041_-	biofilm-associated protein BapA	NA	NA	NA	NA
WP_001518569.1\|1172655_1173138_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_000242604.1\|1173287_1173764_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_001112990.1\|1173753_1174044_+	RnfH family protein	NA	NA	NA	NA
WP_001203445.1\|1174204_1174543_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_000880965.1\|1174691_1176353_-	DNA repair protein RecN	NA	NA	NA	NA
WP_001059155.1\|1176438_1177317_-	NAD(+) kinase	NA	NA	NA	NA
WP_001518875.1\|1177439_1178030_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_000502119.1\|1178209_1178668_+\|transposase	IS200/IS605-like element IS200F family transposase	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
WP_023212948.1\|1178775_1179381_-	hypothetical protein	NA	NA	NA	NA
WP_127172650.1\|1179501_1180788_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001537507.1\|1180807_1181599_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_000460052.1\|1181764_1183126_+	signal recognition particle protein	NA	NA	NA	NA
WP_000256453.1\|1183378_1183627_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_000043266.1\|1183645_1184194_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000469807.1\|1184238_1185006_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_3

1670959 : 1680130

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569166.1\|1670959_1671907_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
WP_000824854.1\|1671890_1672622_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|1672602_1672710_-	protein YohO	NA	NA	NA	NA
WP_023212309.1\|1672769_1673501_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	1.7e-100	87.4
WP_000272850.1\|1673723_1675409_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_000598637.1\|1675405_1676125_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950413.1\|1676171_1676639_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_023137005.1\|1676695_1677226_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703136.1\|1677397_1677856_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	7.6e-54	73.2
WP_023212308.1\|1678096_1680130_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_4

1747297 : 1757804

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001144954.1\|1747297_1748701_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	28.2
WP_023212543.1\|1748878_1749772_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	3.6e-44	42.2
WP_000697846.1\|1750148_1751234_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
WP_015405858.1\|1751233_1752133_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	6.7e-30	36.0
WP_015405859.1\|1752180_1753059_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.7e-108	65.5
WP_000973709.1\|1753059_1753611_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.0
WP_001528498.1\|1753616_1754591_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000648785.1\|1754606_1755380_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_001528452.1\|1755384_1756464_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	2.3e-16	24.5
WP_000126349.1\|1756490_1757804_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_5

1847055 : 1854307

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000394197.1\|1847055_1847475_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_023212516.1\|1847477_1848746_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	6.4e-228	92.4
WP_000208509.1\|1849200_1849413_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_024131163.1\|1849423_1849612_+	hypothetical protein	NA	NA	NA	NA
WP_023212515.1\|1849870_1851067_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	7.4e-109	56.6
WP_023212514.1\|1851716_1852028_+	hypothetical protein	NA	NA	NA	NA
WP_023212513.1\|1852107_1852803_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	4.3e-08	28.7
WP_023212512.1\|1852876_1854307_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.8e-105	58.1

DBSCAN-SWA_6

1956970 : 1965006

Enterobacteria_phage(28.57%)

tail,integrase

attL 1951413:1951427|attR 1962312:1962326

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1951413:1951427	attL	NA	NA	NA	NA
WP_000856225.1\|1956970_1957201_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
WP_001633679.1\|1957338_1957713_+	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_001633680.1\|1957713_1958589_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_000722368.1\|1958605_1958959_+	YebY family protein	NA	NA	NA	NA
WP_001633682.1\|1959341_1960421_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.3e-100	52.5
WP_001530910.1\|1960417_1961524_-	exodeoxyribonuclease 8 (exodeoxyribonuclease viii)	Q9QF34	Lambdoid_phage	3.3e-55	66.7
WP_001655735.1\|1961554_1961842_+	hypothetical protein	Q8HA86	Salmonella_phage	9.6e-39	93.9
WP_001633683.1\|1961838_1962372_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.6e-10	42.4
1962312:1962326	attR	NA	NA	NA	NA
WP_000789530.1\|1962628_1962796_-	lytic enzyme	NA	NA	NA	NA
WP_024134652.1\|1962860_1963043_-	hypothetical protein	NA	NA	NA	NA
WP_053296629.1\|1963110_1963590_+	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	7.7e-41	54.5
WP_023212566.1\|1964142_1965006_+\|tail	phage tail protein	Q1MVL8	Enterobacteria_phage	1.2e-52	44.1

DBSCAN-SWA_7

2137348 : 2144092

Salmonella_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023212459.1\|2137348_2138155_-	peptide ABC transporter ATP-binding protein SapF	G3M9Y6	Bacillus_virus	4.6e-14	27.4
WP_001128869.1\|2138156_2139149_-	peptide ABC transporter ATP-binding protein SapD	NA	NA	NA	NA
WP_001146150.1\|2139148_2140039_-	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_024138900.1\|2140162_2140564_+	DUF4102 domain-containing protein	K7PGY1	Enterobacteria_phage	1.1e-32	58.4
WP_023212458.1\|2140943_2141666_-	hypothetical protein	A0A0P0ZCT1	Stx2-converting_phage	1.1e-35	39.3
WP_001096568.1\|2142136_2142319_+	hypothetical protein	S4TSR3	Salmonella_phage	1.0e-22	77.6
WP_071825182.1\|2142568_2142709_+	pertussis toxin subunit	A0A0U2KD26	Escherichia_phage	3.2e-08	74.3
WP_001605118.1\|2142747_2143047_+	putative pertussis-like toxin subunit	A0A0U2KD26	Escherichia_phage	3.2e-13	54.3
WP_000727928.1\|2142973_2143399_+	peptidase	NA	NA	NA	NA
WP_077905325.1\|2143777_2144092_+	recombinase family protein	A0A1S6L009	Salmonella_phage	4.3e-40	86.1

DBSCAN-SWA_8

2611442 : 2619720

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000497451.1\|2611442_2611682_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
WP_001036548.1\|2611892_2612057_-	hypothetical protein	NA	NA	NA	NA
WP_001529135.1\|2612554_2613364_+	cytolethal distending toxin S-CDT	A5LH53	Enterobacteria_phage	2.1e-62	50.0
WP_023212261.1\|2613436_2613814_+	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.8e-14	38.4
WP_000158843.1\|2613961_2614504_-	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
WP_000733630.1\|2614696_2615425_-	pertussis-like toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	1.6e-61	52.5
WP_023212262.1\|2615441_2615855_-	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	5.5e-19	38.6
WP_023212263.1\|2616899_2618024_-	type III secretion system effector SopF	NA	NA	NA	NA
WP_000444506.1\|2618469_2619720_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	2.0e-19	90.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP012346

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection