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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_022665 Streptococcus suis T15, complete genome 5 crisprs RT,PD-DExK,DinG,csa3,cas3,WYL,DEDDh 0 1 11 0

Results visualization

1. NC_022665
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022665_1 16641-16762 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022665_2 87003-87122 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022665_3 429597-429716 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022665_4 1137974-1138057 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022665_5 1661066-1661150 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_022665_5 5.1|1661094|29|NC_022665|CRISPRCasFinder 1661094-1661122 29 MK448984 Streptococcus phage Javan562, complete genome 35217-35245 0 1.0
NC_022665_5 5.1|1661094|29|NC_022665|CRISPRCasFinder 1661094-1661122 29 KC348598 Streptococcus phage phi20c, complete genome 14-42 1 0.966
NC_022665_5 5.1|1661094|29|NC_022665|CRISPRCasFinder 1661094-1661122 29 MK448810 Streptococcus phage Javan573, complete genome 38358-38386 1 0.966
NC_022665_5 5.1|1661094|29|NC_022665|CRISPRCasFinder 1661094-1661122 29 MK448984 Streptococcus phage Javan562, complete genome 35274-35302 2 0.931
NC_022665_5 5.1|1661094|29|NC_022665|CRISPRCasFinder 1661094-1661122 29 MK448810 Streptococcus phage Javan573, complete genome 38415-38443 2 0.931
NC_022665_5 5.1|1661094|29|NC_022665|CRISPRCasFinder 1661094-1661122 29 LR597637 Escherichia phage ESSI2_ev239 genome assembly, chromosome: 1 20727-20755 7 0.759

1. spacer 5.1|1661094|29|NC_022665|CRISPRCasFinder matches to MK448984 (Streptococcus phage Javan562, complete genome) position: , mismatch: 0, identity: 1.0

ttgacgcaaaatacttttgcttcatttcc	CRISPR spacer
ttgacgcaaaatacttttgcttcatttcc	Protospacer
*****************************

2. spacer 5.1|1661094|29|NC_022665|CRISPRCasFinder matches to KC348598 (Streptococcus phage phi20c, complete genome) position: , mismatch: 1, identity: 0.966

ttgacgcaaaatacttttgcttcatttcc	CRISPR spacer
ttgacgcaaaatgcttttgcttcatttcc	Protospacer
************.****************

3. spacer 5.1|1661094|29|NC_022665|CRISPRCasFinder matches to MK448810 (Streptococcus phage Javan573, complete genome) position: , mismatch: 1, identity: 0.966

ttgacgcaaaatacttttgcttcatttcc	CRISPR spacer
ttgacgcaaaatgcttttgcttcatttcc	Protospacer
************.****************

4. spacer 5.1|1661094|29|NC_022665|CRISPRCasFinder matches to MK448984 (Streptococcus phage Javan562, complete genome) position: , mismatch: 2, identity: 0.931

ttgacgcaaaatacttttgcttcatttcc	CRISPR spacer
ttgacgcaaaatgcttttgcttcatttct	Protospacer
************.***************.

5. spacer 5.1|1661094|29|NC_022665|CRISPRCasFinder matches to MK448810 (Streptococcus phage Javan573, complete genome) position: , mismatch: 2, identity: 0.931

ttgacgcaaaatacttttgcttcatttcc	CRISPR spacer
ttgacgcaaaatgcttttgcttcatttct	Protospacer
************.***************.

6. spacer 5.1|1661094|29|NC_022665|CRISPRCasFinder matches to LR597637 (Escherichia phage ESSI2_ev239 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.759

ttgacgcaaaatacttttgcttcatttcc	CRISPR spacer
catacgaaaaataattttgcttcatttat	Protospacer
.  *** ****** ************* .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 31434 : 41693 7 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_2 48504 : 94609 55 uncultured_virus(16.67%) integrase,protease,transposase attL 85173:85200|attR 94686:94713
DBSCAN-SWA_3 145372 : 208417 54 Macacine_betaherpesvirus(27.27%) transposase,tRNA NA
DBSCAN-SWA_4 908051 : 917765 15 Streptococcus_phage(90.91%) integrase attL 910804:910819|attR 926131:926146
DBSCAN-SWA_5 982381 : 990813 9 Wolbachia_phage(16.67%) integrase attL 984421:984435|attR 992124:992138
DBSCAN-SWA_6 1159027 : 1272284 113 Streptococcus_phage(54.35%) head,capsid,integrase,tail,transposase,holin,protease,tRNA,terminase,portal attL 1202743:1202802|attR 1269423:1270734
DBSCAN-SWA_7 1301914 : 1363399 55 Streptococcus_phage(62.96%) protease,transposase NA
DBSCAN-SWA_8 1427155 : 1440270 12 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_9 1592482 : 1606162 22 Streptococcus_phage(81.25%) integrase attL 1595526:1595545|attR 1606590:1606609
DBSCAN-SWA_10 1661816 : 1696703 54 Streptococcus_phage(94.0%) capsid,integrase,tail,holin,terminase,portal attL 1661325:1661345|attR 1696427:1696447
DBSCAN-SWA_11 1822420 : 1875600 47 uncultured_Mediterranean_phage(22.22%) protease,integrase,tRNA,transposase attL 1812820:1812835|attR 1837933:1837948
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage