CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009975	Pseudomonas putida S12 plasmid pTTS12, complete sequence	1 crisprs	DEDDh,PD-DExK	0	1	3	0
NZ_CP009974	Pseudomonas putida S12, complete genome	3 crisprs	DEDDh,cas3,DinG,csa3,WYL,RT	0	0	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009975_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009975_1

209956-210046

Orphan

Consensus_repeat	Method
ACTCCAGTTTCGCATGCTAAACCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009975_1

>merge|NZ_CP009975|1|209956-210046|CRISPRCasFinder
ACTCCAGTTTCGCATGCTAAACCGGAACCGGATGCTCCGCAGGAAAGTCATCAGCCGGAAAATTTGAACCCAGTTTCGCATGCTAAACCGG

>NZ_CP009975|1|1|209956-210046|CRISPRCasFinder
ACTCCAGTTTCGCATGCTAAACCGG	AACCGGATGCTCCGCAGGAAAGTCATCAGCCGGAAAATTTG
AACCCAGTTTCGCATGCTAAACCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009975.1\|WP_052250705.1\|200186_200825_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009975.1\|WP_019437342.1\|219811_220159_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009975.1\|WP_019437341.1\|222359_222713_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009975.1\|WP_019437637.1\|202511_203267_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NZ_CP009975.1\|WP_019439032.1\|214150_214771_-\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NZ_CP009975.1\|WP_019439027.1\|203946_204435_+\|CheW-domain-containing-protein	unknown	unknown	gnl\|CDD\|214588
NZ_CP009975.1\|WP_010792594.1\|196628_197528_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP009975.1\|WP_019439028.1\|204431_206456_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP009975.1\|WP_010792598.1\|203570_203957_+\|response-regulator	unknown	unknown	gnl\|CDD\|333815
NZ_CP009975.1\|WP_019437692.1\|218213_219194_-\|IS5-like-element-ISPpu21-family-transposase	unknown	unknown	gnl\|CDD\|225581
NZ_CP009975.1\|WP_019437638.1\|200979_202494_+\|IS21-like-element-ISPpu7-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP009975.1\|WP_019439025.1\|197702_199145_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP009975.1\|WP_155295800.1\|216583_218083_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009975.1\|WP_010792605.1\|221267_221813_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009975.1\|WP_019439033.1\|214842_216591_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009975.1\|WP_019439029.1\|206452_207244_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224271
NZ_CP009975.1\|WP_021018435.1\|221931_222393_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009975.1\|WP_010792597.1\|199264_200125_-\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP009975.1\|WP_019439031.1\|213008_213941_+\|chemotaxis-protein-CheB	unknown	unknown	gnl\|CDD\|376531
NZ_CP009975.1\|WP_079278433.1\|220221_221184_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377717

Protein	Function_ID	Function_description	E-value
NZ_CP009975.1\|WP_019437637.1\|202511_203267_+\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	6.7331e-78
NZ_CP009975.1\|WP_019439032.1\|214150_214771_-\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	9.24413e-118
NZ_CP009975.1\|WP_019439027.1\|203946_204435_+\|CheW-domain-containing-protein	gnl\|CDD\|214588	smart00260, CheW, Two component signalling adaptor domain.	1.84852e-12
NZ_CP009975.1\|WP_010792594.1\|196628_197528_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	3.61725e-35
NZ_CP009975.1\|WP_019439028.1\|204431_206456_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.37587e-19
NZ_CP009975.1\|WP_010792598.1\|203570_203957_+\|response-regulator	gnl\|CDD\|333815	pfam00072, Response_reg, Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.	9.43056e-28
NZ_CP009975.1\|WP_019437692.1\|218213_219194_-\|IS5-like-element-ISPpu21-family-transposase	gnl\|CDD\|225581	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair].	8.23426e-32
NZ_CP009975.1\|WP_019437638.1\|200979_202494_+\|IS21-like-element-ISPpu7-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.49968e-37
NZ_CP009975.1\|WP_019439025.1\|197702_199145_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	5.28674e-09
NZ_CP009975.1\|WP_019439029.1\|206452_207244_+\|hypothetical-protein	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	4.75748e-46
NZ_CP009975.1\|WP_010792597.1\|199264_200125_-\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	7.64101e-42
NZ_CP009975.1\|WP_019439031.1\|213008_213941_+\|chemotaxis-protein-CheB	gnl\|CDD\|376531	pfam01339, CheB_methylest, CheB methylesterase.	2.58218e-45
NZ_CP009975.1\|WP_079278433.1\|220221_221184_-\|hypothetical-protein	gnl\|CDD\|377717	pfam06834, TraU, TraU protein. This family consists of several bacterial TraU proteins. TraU appears to be more essential to conjugal DNA transfer than to assembly of pilus filaments.	2.92527e-07

>NZ_CP009975.1|WP_019439029.1|206452_207244_+|hypothetical-protein
MNTVDDLILDEGMANSWMKIIEERFAIEIDEHRRVAFARALTSFACETGETLESLFKLFVSGRLEEAQRFQILHLATNHETRFFRYPPSLSAIRDACADIRRPPRVLSVGCSTGEEPYSIACTLLRAGHAAFHVHGTDVSQPCIDKARQGIYRGHPEIRLDVAAPQGQHEVRFHAWIRDMVTFEQHNILAERPVNFTAPDVIITQNMLIYYRVETRHLILQKLAAMLPIGGYLLTGPAEDGNWNPLGLKRLPNHLLNLFVRVA
>NZ_CP009975.1|WP_019439028.1|204431_206456_+|methyl-accepting-chemotaxis-protein
MRQDRMSNNFSFVPLTAVLLIATGSAAAWTGYSFLKDTRADSFYVAETYELKSAAMQTIYLADKAAADGAYASQLVEAESQVERALMHLRNGDPIKGIPGAPESVLRSLESLSASWDGIAPSIAKLISGQSGTEAFSRSAKEAKTAVVKVIESGRSAEALLSKLNATSQQKSQLAQALTELEADVAGVTATTVVDATGLQGAEAGVSKYLGALTAFGNSLPRDKAMMDELIKSYRSAQSAQSLISQASGLSANSAQNLPHAKEIWQARDKIASSTDTLIASVKALPDARAINPTLVAVLGALTIGLAILSVLLVARVSASRAQAVETRGSTIEGSQRERSKELSLLLTEIERVGRGELDLTLTDDRDSTKEIAKLLNQVFARFHEIFTETSQTVMGLAAATEQTITTARNVDRNRDEQFRAIEHISSLIADMNTFINLIQQLMGDTQRVANSVANKVHAGSESVNGVHEGILVQTQHLNSIQHRNKHLIERFQMLERISEFVKEVATKSELVAYNAYLVSDQVEGNTELSRAMAKSGEAVQDLSTQSKAVVSEIGQLLKDMNEAARDTQTAVDISLSEMQGLLTRSNAALASLKDIQSITESLTTSVDDVNQRTNSLISQSSEVSETMSSIRHYASENSAASEQTASAMNNLNRQAQNLHSGIQDFYSKQRERA
>NZ_CP009975.1|WP_019439027.1|203946_204435_+|CheW-domain-containing-protein
MSSDISSGRYKCIGYRIGDTYCLSPSLAVNAITQVPVSPTQVPGTKPWLLGATKLDGDIIPFVNIARFLSIPQTMSRAEHSNPVALIVRGGADVGDVGVIVDQVVGFIPSGNLTDAPNANLKIPPGLGACLVGVVTGDARTWAVIDIQALIADPKMQTIDLT
>NZ_CP009975.1|WP_010792598.1|203570_203957_+|response-regulator
MSNIRSVCIVDDSPGMRKMGAGFLQKADIEVHLAKDGYEALRVIREARPDACFIDIEMPNLDGLKLASILRASTQFKHLPIAMLSSASSPFDIQKGLLAGADLYLTKPFTGDKIAKALIDMEAIIDEQ
>NZ_CP009975.1|WP_019437637.1|202511_203267_+|ATP-binding-protein
MLPHPTLDKLQTLRLHGMLKALNEQLKTPDIDSLSFEERLGLLVDRELTERDDKRLSSRLRQARLKHNACLEDIDYRSPRGLDKALILQLSSGQWLRDGLNLIIGGPTGVGKTWLACALAHQACREGYSVRYLRLPRLLEELGLAHGDGRFAKLMSSYAKTDLLILDDWGLAPFTGEQRRDMLELLDDRYGQRSTIVTSQMPVDNWHELIGDPTLADAILDRLVHNAYRINLKGESMRKRTQKLTTPANPD
>NZ_CP009975.1|WP_019437638.1|200979_202494_+|IS21-like-element-ISPpu7-family-transposase
MRKIREVLRLKFDCGLSVRKIARSLGIGHSSAGDYLCRFAASGLTWPCSLSDAELEQQLFPPAPAVASEKRPLPDWAWVHAELRRPGVTLALLWQEYRLSQPQGFQYSWFCEHYRAWQGKLDVVMRQEHRVGEKLFVDYAGQTVPVIDRHSGEIRQAQVFVAVLGASSYTFAEATWSQQLPDWLGSHARCFAFLGGVPEIVVPDNLRSAVSKSHRYEPDINPSYRDLAEHYGVAVVPARARKPRDKAKAEVGVQVVERWILAALRNRQFFSLDELNTAIAGLLERLNQRPFKKLPGSRQSAFDSLDRPALRPLPEQPYVYAEWKKARVHIDYHVEVDGHYYSVPYQLVKKQLEVRLTARTVEFFHANQRVASHLRSMHKGRHSTQAEHMPKSHREHAEWTPQRLIRWAEQTGPNTAGVIRHILERRIHPQQGYRACLGILRLGKTHGEARLELACRRAISLGTCSYKSLESILRQGLENLPLAQTNLPLLPDDHANLRGSAYYH
>NZ_CP009975.1|WP_052250705.1|200186_200825_-|hypothetical-protein
MSGCAWNGCPSQRGIRKRIARQLQSEPTSTPPSPADKKPSKAVQRLEKVQTANMDGRKDRISLESTSRVLTICFPGAKLVSLNTMLRVHDAKATRLKNTWLKRVEALRYTYKAVLEEWIAIATYPLLVEEVYITGESSLLDPESVTAACKPVIDALVSNGFLPDDDPSHIAHPLPYTSRGESPGLVICLRPAGRPWGLIEDATIQVASSLGR
>NZ_CP009975.1|WP_010792597.1|199264_200125_-|ParB/RepB/Spo0J-family-partition-protein
MYQSETGINPTESHCLGINLVPVEHRDVDVDLMQPGIWQTRRNFTLAELEELGDSMVKAGGNVTPVVLCPRAQGGYFIISGERRWRAAQLKMIPRLHCRIGHYTDNQARFISAVENVLRVQLNPIEEAQAYADIQETGLSHEQIGKELGKSRSHVSNYLRLLTLDITAKDFLIHGKLTATQARPLCSLDSKGIQREVATKAVRLGWSVKKIEDEVAKHLNKPKPKVNLPKQDADIARLTRLVSDHTGYPCVIQKTPSGNWQMGFLMTGDDQFAGLLERLGIKVDEC
>NZ_CP009975.1|WP_019439025.1|197702_199145_-|hypothetical-protein
MLNRPFPVPTLLAIALTAVLAGCTSTHEPVELASIEPQSQYDQRIQDGLGSQKYTESQILYMRRLNEFKDQIDSLEKQKQALEASLSTTAYEQDLGSGKAPSTESSRIEEFQAATQASQARVAEENSKAAIRQSIIENDRDRALLEAENRAMAEIEQLKAADAAKQADLAKLKAQLAEQKAESSRTLEKQRFAMAVANADAERRAANAVVEINNQISELKGQLSQLETKLAAAQKEHERLADLSRQLQTPVAVTAAITDQPSPEIGSLTESRIAEIKARLAREKTEITAKARTEVAALTAGAEIKKATVVAPVVTGRAVYAGSYGEKPTTYAKVDDKPVKQDAKPLANASKQAPVVTVAKFEPKISPVVIQRGSDAGSAVLAGGPVTSSVQSPAPIVVSPKSRVIYDVLYVYKDEGSWQKFQRYLEAYGIKDFEPVHKGSTYYLYMGRFYDKLAAAKRVEYLNRTTNTNHATVHPQEVPM
>NZ_CP009975.1|WP_010792594.1|196628_197528_-|ParA-family-protein
MAAIPFKKRKLLADVHAVTNQKGGVGKTTIDFHWLVYLVEQGYRVLGIDLDSQGNFSSRLAPDSRNGGLRSAHLFKEELPDLKPLQTALGADLIYALNKDDELSSVEQIGLSAVGPFAKHIQKLAEDYDYIVIDTPPTNGVRMIAASVVSDHIFVPVELAAFAVDGVISLIETFDMVGPLFGTQITPTGIICNKYNTRVNAHRESLEDLRKVVGPKILQNSLSIRGAIDTALRQCKPVWSMRTNGAERETGVEMIRLMEEMAHRAGVEITPVVIAPKVPRKKKPVKKKSQSRAKKVGAI
>NZ_CP009975.1|WP_019439031.1|213008_213941_+|chemotaxis-protein-CheB
MRVGIISTSNVQVALIQEVLSPVVGELTVYDMSHVENGDLSATGVHALIVDFSDEAILNSEDVLEMLERDEPVCVLNERELYSMSAAERQAWCNKLVDELKRSIPDLAESLDARKAEIESRNANDTWVIGCSSGGPQAIRDFLGELPTLPVSIFLVQHLTEAAFNTYVQRVRECTSRWEVVAAEHGTKLKAGTIFVVPRDTTVEVRSGVIQLRPVKPNTYSPSINSVIRSVFSSIAGKLGVIILTGMGDDGASGIRDLKGKAKIVMAQDAESSQARSMPDAARETGAVSFSGKPAELARHMYRMYGIGNH
>NZ_CP009975.1|WP_019439032.1|214150_214771_-|recombinase-RecA
MNSMALQRVGFSGASLYEPKSVLLPLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSVKDGDEQIGNETRVKVVKNKVSPPFRQAEFQILYGKGINKLGEIVDLGVAGGLIEKSGAWYSYAGQKIGQGKANACQYLQENPTVSDEIEAKLRSQKITGVAVITDSHGDDDQEVA
>NZ_CP009975.1|WP_019439033.1|214842_216591_+|hypothetical-protein
MSRMREDLVDSIRACCPEDILIWVEKHPPKRRAPLIRVFFMIAHELDSEWYRNPVAITNACRQFLSHRRSAISEITGKPIKEVTVISDYTAVRYYLNRLQKAKKLPSNALILPVPNSTDVFSEKECNILGYLTLEHAIQANSMENALNEIAHQIEKHRTVILSKCKRIVAEGYARFLEVPGMIRRSDVAAIRLTKDNLDPNLRGSRSGQHISFFSPSHPNGFSNSVAYLATEQDGLFTRKSFPGAHHIYSWSTTKIKSYLGITEEFAVAAMCIIIDELGINVFDLANAQVKKTKDGQFVTIREDGGITITTLKPRANKLIERHAPKATDEIEIDAESIDAHTALWMLLQMRVQHSKALNSNYLFVMDGSSPTRHGDEHLYRILDTRRKNTFKAIIDSLPSWVAEAEPTMPKIRVSRGLLKWIESGGDTLETTIYLGNSLLTALRNYIPPSIQEFVYRKRIRDHQKIQLLIAEDISTHSPRIKNNNYECAKMQFIEAVKFLRTNSRHTTTHNPGQVFCFLCSPEAIGLIVSYATYGTKQELISTCKKIITKIQDEGSRKMIKLLADATPIPMNFELLEVHVNE
>NZ_CP009975.1|WP_155295800.1|216583_218083_+|hypothetical-protein
MNNEKIKKSSPSTATSQAILPSWIHPNSSNMKWYLPRTGTKVTVSEDPNSSRYVKLSFDYQLFDGSSTSDLIWNLFIRDLQSSAIALIESSKSKRPCALVGFVRTAFEIADHVYEARHRLNQPPKIVTLADITLEDIKTFLEAHDLTLMGINLLNLDTQLGPTPRGRENIASCISGMHIPPITQKILIQKLKNNRSDICREFTCTHSANEENEENEENEEDTLSISTIQNKCTNLTYLHSTKEYQIHSFKVGTHDISDVINSMTGRFVDKSQTPLMPTNIAFHYISNAIVFHRNYAPHIRAYIKQLDNHYNREIIDKYAASTIRSNVHIFKKQTFEAVPIPKALQHLNIKTYGKCGSNRGGIYCNSIMREHISTDELIDFYAITTRILIHTFSACRVLSTALLDADCLTISKLDGLWDLKLKIPKASNSHELEIIKRPIPKVIWDFINEYIEFMEDRHPGMTSIWPSGSFKGKDRSEMTLLKKLDQYSDWIQVPKDGLK
>NZ_CP009975.1|WP_019437692.1|218213_219194_-|IS5-like-element-ISPpu21-family-transposase
MKQMTFADAEYAGKRKQTRKELFLIEMEQVVPWQGLIALIEPHYPKGEGGRPAYPLMAMLRVHLLQNWFGYSDPAMEEALYETTILRQFAGLSLERIPDETTILNFRRLLERHELAAGILAVINGYLGDRGLSLRQGTIVDATLIHAPSSTKNKDGKRDPEMHQTKKGNQYYFGMKAHIGADSESGLVHSVVGTAANVADVTQVDKLLHGEENLVSGDAGYTGVEKRAEHAGRSVIWQIAARRSTYQQLSKRSPLYKAKRKIEKAKAQVRAKVEHPFRVIKRQFGYTKVRFRGLAKNTAQLITLFALSNLWMARRHLLANTGEVRL
>NZ_CP009975.1|WP_019437342.1|219811_220159_-|hypothetical-protein
MDSFQITTSPLLRQFATRLDPRTIQVTTKLGVATIIRADFDPVSFPADEDLQEDFLRDLINRANPGALELLNQSLGKCLGDQAKAIRQVLGSGTSETGRNLSHASRVHRTEKFHE
>NZ_CP009975.1|WP_079278433.1|220221_221184_-|hypothetical-protein
MSAAASAAAAIGFGVKTQEAAAMSASIATLLFIDPITLEYKIFGPCCHFCPDHLIVSHYQPVALVEVIKGGGDTVLGQPIGGPLSVGTDNNDYTSMAVRIWQLPDWAIDIAMGYQSCKLCGVDAARTTNFSLTSKFDMCGAVANPIVSKGVSAFNSALPNCFPKLLYSTEFDPTWNTGCRDIAAAEAIAGVICNPLTGSFSIPGMEICIGQWGGLYPRQMASHNDNAAIAAGIAAYRAIHLSGFTIGTFPFSAALSVGKLQQTQPWPTVGFKAGSALLDTAMRLYPVSLEELYAFVWWTPVVCCKEYEEIMGVCSPTICG
>NZ_CP009975.1|WP_010792605.1|221267_221813_-|hypothetical-protein
MRDNDDAFQTIEVPVNLNGTVKVRVPSHCHPEEVEKLALEQFKARLNQPVTFGESGYCSYEFRGEAWSTKGQARVGSLEFEVRHDMALNVSGAMVALAPAAGQFGADRLRARLTAYVSREAVYITGRKPGTDLEHVMVMVDIQDGEPTVNVMSPDGDDQFDADGSMPMVSVGFPGMCWNLN
>NZ_CP009975.1|WP_021018435.1|221931_222393_+|hypothetical-protein
MESQILGVIGSVLLLGAIAALWIGRLNSAAGKASAGEEAHSSNHHLEETLPAKPKINMVPHVSATPIQTSPTEPERVIELAKAEVRVEEPVLVTRPEVDCDDAAMNLQLADQLLVVGDFEGVAEYAKLVLEMDTASVRQRDRAQILLRREMAR
>NZ_CP009975.1|WP_019437341.1|222359_222713_-|hypothetical-protein
MSNLSLPLYGAEIEAFGVLGTFIGADLMDDGDVHFTLKMPESNVRLAHSYAVAEDQFCLVVGASLIQVSKTNCVWRSSPGFDVTDDEGFIAFRVDRHVRAAVTVMKFQRAISRLNRI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009975_1	1.1\|209981\|41\|NZ_CP009975\|CRISPRCasFinder	209981-210021	41	NZ_KY494864	Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence	210483-210523	0	1.0
NZ_CP009975_1	1.1\|209981\|41\|NZ_CP009975\|CRISPRCasFinder	209981-210021	41	NZ_LT969519	Pseudomonas aeruginosa isolate RW109 genome assembly, plasmid: RW109 plasmid 1	261776-261816	0	1.0
NZ_CP009975_1	1.1\|209981\|41\|NZ_CP009975\|CRISPRCasFinder	209981-210021	41	NZ_CP009975	Pseudomonas putida S12 plasmid pTTS12, complete sequence	209981-210021	0	1.0
NZ_CP009975_1	1.1\|209981\|41\|NZ_CP009975\|CRISPRCasFinder	209981-210021	41	NZ_CP029094	Pseudomonas aeruginosa strain AR441 plasmid unnamed3, complete sequence	46632-46672	0	1.0
NZ_CP009975_1	1.1\|209981\|41\|NZ_CP009975\|CRISPRCasFinder	209981-210021	41	NZ_CP040126	Pseudomonas aeruginosa strain PA298 plasmid pBM908, complete sequence	204332-204372	0	1.0
NZ_CP009975_1	1.1\|209981\|41\|NZ_CP009975\|CRISPRCasFinder	209981-210021	41	NZ_CP016215	Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence	276754-276794	0	1.0
NZ_CP009975_1	1.1\|209981\|41\|NZ_CP009975\|CRISPRCasFinder	209981-210021	41	NZ_CP039989	Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence	26560-26600	0	1.0
NZ_CP009975_1	1.1\|209981\|41\|NZ_CP009975\|CRISPRCasFinder	209981-210021	41	NZ_CP039991	Pseudomonas aeruginosa strain T2101 plasmid pBT2101, complete sequence	26718-26758	0	1.0
NZ_CP009975_1	1.1\|209981\|41\|NZ_CP009975\|CRISPRCasFinder	209981-210021	41	NZ_MN433457	Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence	78860-78900	0	1.0
NZ_CP009975_1	1.1\|209981\|41\|NZ_CP009975\|CRISPRCasFinder	209981-210021	41	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	43166-43206	0	1.0
NZ_CP009975_1	1.1\|209981\|41\|NZ_CP009975\|CRISPRCasFinder	209981-210021	41	NZ_CP045003	Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence	352191-352231	0	1.0
NZ_CP009975_1	1.1\|209981\|41\|NZ_CP009975\|CRISPRCasFinder	209981-210021	41	NZ_CP045917	Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence	29967-30007	0	1.0
NZ_CP009975_1	1.1\|209981\|41\|NZ_CP009975\|CRISPRCasFinder	209981-210021	41	MF344571	Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence	28146-28186	0	1.0
NZ_CP009975_1	1.1\|209981\|41\|NZ_CP009975\|CRISPRCasFinder	209981-210021	41	MF344568	Pseudomonas aeruginosa plasmid p727-IMP, complete sequence	28146-28186	0	1.0
NZ_CP009975_1	1.1\|209981\|41\|NZ_CP009975\|CRISPRCasFinder	209981-210021	41	MF344569	Pseudomonas aeruginosa plasmid p12939-PER, complete sequence	27912-27952	0	1.0
NZ_CP009975_1	1.1\|209981\|41\|NZ_CP009975\|CRISPRCasFinder	209981-210021	41	MF344570	Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence	29321-29361	0	1.0
NZ_CP009975_1	1.1\|209981\|41\|NZ_CP009975\|CRISPRCasFinder	209981-210021	41	NZ_CP039294	Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence	253492-253532	0	1.0
NZ_CP009975_1	1.1\|209981\|41\|NZ_CP009975\|CRISPRCasFinder	209981-210021	41	CP027478	Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence	104459-104499	0	1.0
NZ_CP009975_1	1.1\|209981\|41\|NZ_CP009975\|CRISPRCasFinder	209981-210021	41	NZ_CP027170	Pseudomonas aeruginosa strain AR_0356 plasmid unnamed2, complete sequence	312303-312343	0	1.0
NZ_CP009975_1	1.1\|209981\|41\|NZ_CP009975\|CRISPRCasFinder	209981-210021	41	NZ_CP015879	Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence	330180-330220	0	1.0
NZ_CP009975_1	1.1\|209981\|41\|NZ_CP009975\|CRISPRCasFinder	209981-210021	41	NZ_KY883660	Pseudomonas putida strain SY153 plasmid pSY153-MDR, complete sequence	29343-29383	0	1.0
NZ_CP009975_1	1.1\|209981\|41\|NZ_CP009975\|CRISPRCasFinder	209981-210021	41	NZ_KU130294	Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence	26766-26806	1	0.976

1. spacer 1.1|209981|41|NZ_CP009975|CRISPRCasFinder matches to NZ_KY494864 (Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence) position: , mismatch: 0, identity: 1.0

aaccggatgctccgcaggaaagtcatcagccggaaaatttg	CRISPR spacer
aaccggatgctccgcaggaaagtcatcagccggaaaatttg	Protospacer
*****************************************

2. spacer 1.1|209981|41|NZ_CP009975|CRISPRCasFinder matches to NZ_LT969519 (Pseudomonas aeruginosa isolate RW109 genome assembly, plasmid: RW109 plasmid 1) position: , mismatch: 0, identity: 1.0

aaccggatgctccgcaggaaagtcatcagccggaaaatttg	CRISPR spacer
aaccggatgctccgcaggaaagtcatcagccggaaaatttg	Protospacer
*****************************************

3. spacer 1.1|209981|41|NZ_CP009975|CRISPRCasFinder matches to NZ_CP009975 (Pseudomonas putida S12 plasmid pTTS12, complete sequence) position: , mismatch: 0, identity: 1.0

aaccggatgctccgcaggaaagtcatcagccggaaaatttg	CRISPR spacer
aaccggatgctccgcaggaaagtcatcagccggaaaatttg	Protospacer
*****************************************

4. spacer 1.1|209981|41|NZ_CP009975|CRISPRCasFinder matches to NZ_CP029094 (Pseudomonas aeruginosa strain AR441 plasmid unnamed3, complete sequence) position: , mismatch: 0, identity: 1.0

aaccggatgctccgcaggaaagtcatcagccggaaaatttg	CRISPR spacer
aaccggatgctccgcaggaaagtcatcagccggaaaatttg	Protospacer
*****************************************

5. spacer 1.1|209981|41|NZ_CP009975|CRISPRCasFinder matches to NZ_CP040126 (Pseudomonas aeruginosa strain PA298 plasmid pBM908, complete sequence) position: , mismatch: 0, identity: 1.0

aaccggatgctccgcaggaaagtcatcagccggaaaatttg	CRISPR spacer
aaccggatgctccgcaggaaagtcatcagccggaaaatttg	Protospacer
*****************************************

6. spacer 1.1|209981|41|NZ_CP009975|CRISPRCasFinder matches to NZ_CP016215 (Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence) position: , mismatch: 0, identity: 1.0

aaccggatgctccgcaggaaagtcatcagccggaaaatttg	CRISPR spacer
aaccggatgctccgcaggaaagtcatcagccggaaaatttg	Protospacer
*****************************************

7. spacer 1.1|209981|41|NZ_CP009975|CRISPRCasFinder matches to NZ_CP039989 (Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence) position: , mismatch: 0, identity: 1.0

aaccggatgctccgcaggaaagtcatcagccggaaaatttg	CRISPR spacer
aaccggatgctccgcaggaaagtcatcagccggaaaatttg	Protospacer
*****************************************

8. spacer 1.1|209981|41|NZ_CP009975|CRISPRCasFinder matches to NZ_CP039991 (Pseudomonas aeruginosa strain T2101 plasmid pBT2101, complete sequence) position: , mismatch: 0, identity: 1.0

aaccggatgctccgcaggaaagtcatcagccggaaaatttg	CRISPR spacer
aaccggatgctccgcaggaaagtcatcagccggaaaatttg	Protospacer
*****************************************

9. spacer 1.1|209981|41|NZ_CP009975|CRISPRCasFinder matches to NZ_MN433457 (Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence) position: , mismatch: 0, identity: 1.0

aaccggatgctccgcaggaaagtcatcagccggaaaatttg	CRISPR spacer
aaccggatgctccgcaggaaagtcatcagccggaaaatttg	Protospacer
*****************************************

10. spacer 1.1|209981|41|NZ_CP009975|CRISPRCasFinder matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

aaccggatgctccgcaggaaagtcatcagccggaaaatttg	CRISPR spacer
aaccggatgctccgcaggaaagtcatcagccggaaaatttg	Protospacer
*****************************************

11. spacer 1.1|209981|41|NZ_CP009975|CRISPRCasFinder matches to NZ_CP045003 (Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence) position: , mismatch: 0, identity: 1.0

aaccggatgctccgcaggaaagtcatcagccggaaaatttg	CRISPR spacer
aaccggatgctccgcaggaaagtcatcagccggaaaatttg	Protospacer
*****************************************

12. spacer 1.1|209981|41|NZ_CP009975|CRISPRCasFinder matches to NZ_CP045917 (Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence) position: , mismatch: 0, identity: 1.0

aaccggatgctccgcaggaaagtcatcagccggaaaatttg	CRISPR spacer
aaccggatgctccgcaggaaagtcatcagccggaaaatttg	Protospacer
*****************************************

13. spacer 1.1|209981|41|NZ_CP009975|CRISPRCasFinder matches to MF344571 (Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence) position: , mismatch: 0, identity: 1.0

aaccggatgctccgcaggaaagtcatcagccggaaaatttg	CRISPR spacer
aaccggatgctccgcaggaaagtcatcagccggaaaatttg	Protospacer
*****************************************

14. spacer 1.1|209981|41|NZ_CP009975|CRISPRCasFinder matches to MF344568 (Pseudomonas aeruginosa plasmid p727-IMP, complete sequence) position: , mismatch: 0, identity: 1.0

aaccggatgctccgcaggaaagtcatcagccggaaaatttg	CRISPR spacer
aaccggatgctccgcaggaaagtcatcagccggaaaatttg	Protospacer
*****************************************

15. spacer 1.1|209981|41|NZ_CP009975|CRISPRCasFinder matches to MF344569 (Pseudomonas aeruginosa plasmid p12939-PER, complete sequence) position: , mismatch: 0, identity: 1.0

aaccggatgctccgcaggaaagtcatcagccggaaaatttg	CRISPR spacer
aaccggatgctccgcaggaaagtcatcagccggaaaatttg	Protospacer
*****************************************

16. spacer 1.1|209981|41|NZ_CP009975|CRISPRCasFinder matches to MF344570 (Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence) position: , mismatch: 0, identity: 1.0

aaccggatgctccgcaggaaagtcatcagccggaaaatttg	CRISPR spacer
aaccggatgctccgcaggaaagtcatcagccggaaaatttg	Protospacer
*****************************************

17. spacer 1.1|209981|41|NZ_CP009975|CRISPRCasFinder matches to NZ_CP039294 (Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence) position: , mismatch: 0, identity: 1.0

aaccggatgctccgcaggaaagtcatcagccggaaaatttg	CRISPR spacer
aaccggatgctccgcaggaaagtcatcagccggaaaatttg	Protospacer
*****************************************

18. spacer 1.1|209981|41|NZ_CP009975|CRISPRCasFinder matches to CP027478 (Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence) position: , mismatch: 0, identity: 1.0

aaccggatgctccgcaggaaagtcatcagccggaaaatttg	CRISPR spacer
aaccggatgctccgcaggaaagtcatcagccggaaaatttg	Protospacer
*****************************************

19. spacer 1.1|209981|41|NZ_CP009975|CRISPRCasFinder matches to NZ_CP027170 (Pseudomonas aeruginosa strain AR_0356 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

aaccggatgctccgcaggaaagtcatcagccggaaaatttg	CRISPR spacer
aaccggatgctccgcaggaaagtcatcagccggaaaatttg	Protospacer
*****************************************

20. spacer 1.1|209981|41|NZ_CP009975|CRISPRCasFinder matches to NZ_CP015879 (Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence) position: , mismatch: 0, identity: 1.0

aaccggatgctccgcaggaaagtcatcagccggaaaatttg	CRISPR spacer
aaccggatgctccgcaggaaagtcatcagccggaaaatttg	Protospacer
*****************************************

21. spacer 1.1|209981|41|NZ_CP009975|CRISPRCasFinder matches to NZ_KY883660 (Pseudomonas putida strain SY153 plasmid pSY153-MDR, complete sequence) position: , mismatch: 0, identity: 1.0

aaccggatgctccgcaggaaagtcatcagccggaaaatttg	CRISPR spacer
aaccggatgctccgcaggaaagtcatcagccggaaaatttg	Protospacer
*****************************************

22. spacer 1.1|209981|41|NZ_CP009975|CRISPRCasFinder matches to NZ_KU130294 (Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence) position: , mismatch: 1, identity: 0.976

aaccggatgctccgcaggaaagtcatcagccggaaaatttg	CRISPR spacer
aaccggatgctccgcaggaaggtcatcagccggaaaatttg	Protospacer
********************.********************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

13258 : 67747

uncultured_Caudovirales_phage(17.65%)

transposase,integrase

attL 15033:15047|attR 55352:55366

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019436561.1\|13258_14416_+\|integrase	site-specific integrase	A0A1P8DJJ6	Virus_Rctr41k	4.3e-05	24.4
WP_023389346.1\|14426_16034_+	hypothetical protein	NA	NA	NA	NA
15033:15047	attL	NA	NA	NA	NA
WP_033724593.1\|16789_17872_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_033724594.1\|17897_18281_+	hypothetical protein	NA	NA	NA	NA
WP_019436566.1\|18371_19334_-	SdiA-regulated domain-containing protein	NA	NA	NA	NA
WP_019436567.1\|19380_19734_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_019436568.1\|19739_20591_-	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	2.3e-96	64.0
WP_019436569.1\|20605_22093_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	4.3e-239	87.9
WP_100219738.1\|22695_23700_+	DUF4113 domain-containing protein	A0A1W6JNT0	Morganella_phage	7.2e-73	45.5
WP_019438696.1\|24028_24406_+	hypothetical protein	NA	NA	NA	NA
WP_019438697.1\|24430_27367_-	hypothetical protein	NA	NA	NA	NA
WP_019438698.1\|27907_30496_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_019438699.1\|30574_31420_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_019438700.1\|31446_31743_+	hypothetical protein	NA	NA	NA	NA
WP_019438701.1\|31774_32302_+	hypothetical protein	NA	NA	NA	NA
WP_100219739.1\|32545_33559_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_019438704.1\|33699_34083_-	hypothetical protein	NA	NA	NA	NA
WP_019438705.1\|34280_34706_+	hypothetical protein	NA	NA	NA	NA
WP_019438706.1\|34707_35004_+	hypothetical protein	NA	NA	NA	NA
WP_019438707.1\|35010_36591_-	alkaline phosphatase family protein	NA	NA	NA	NA
WP_019438708.1\|36731_38000_-	hypothetical protein	NA	NA	NA	NA
WP_100219737.1\|38848_39580_-	TonB C-terminal domain-containing protein	NA	NA	NA	NA
WP_019438711.1\|39698_40481_-	N-6 DNA methylase	A0A2K9V411	Faecalibacterium_phage	1.5e-22	32.8
WP_019438712.1\|40563_41166_-	hypothetical protein	NA	NA	NA	NA
WP_019438714.1\|41465_42413_-	hypothetical protein	NA	NA	NA	NA
WP_019438715.1\|42568_43849_-	site-specific DNA-methyltransferase	NA	NA	NA	NA
WP_010794461.1\|43974_44331_-	hypothetical protein	NA	NA	NA	NA
WP_085983697.1\|44564_44834_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_019438716.1\|44802_45927_+\|integrase	site-specific integrase	A0A1S6L1B6	Ralstonia_phage	1.3e-46	41.3
WP_080771117.1\|47730_48681_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_019437953.1\|48838_49273_-	GTP diphosphokinase	A0A141E1X8	Streptococcus_phage	2.2e-26	46.7
WP_019437954.1\|49347_49692_-	hypothetical protein	NA	NA	NA	NA
WP_019437955.1\|49862_50285_+	hypothetical protein	NA	NA	NA	NA
WP_019437956.1\|50339_50975_-	SOS response-associated peptidase	A0A218MNF5	uncultured_virus	3.4e-28	39.5
WP_019437958.1\|51301_52615_-	hypothetical protein	NA	NA	NA	NA
WP_019437959.1\|52774_53656_-	prohibitin family protein	A0A1S6UA41	Serratia_phage	2.1e-52	53.7
WP_019437298.1\|53899_54655_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	3.5e-72	54.4
WP_019437297.1\|54675_56190_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	4.0e-144	52.7
55352:55366	attR	NA	NA	NA	NA
WP_011078030.1\|56622_57873_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	2.2e-47	46.5
WP_011078029.1\|58040_59699_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	5.6e-22	36.4
WP_011600734.1\|60040_60601_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.6e-58	98.4
WP_040117735.1\|60604_63571_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	97.3
WP_019437774.1\|63673_64036_+	hypothetical protein	NA	NA	NA	NA
WP_019437775.1\|64032_64953_-	hypothetical protein	A0A2I7R6K1	Vibrio_phage	4.6e-34	44.3
WP_019437777.1\|65373_66408_+	hypothetical protein	NA	NA	NA	NA
WP_019437778.1\|66541_67747_+	hypothetical protein	J9Q6K3	Salmonella_phage	2.6e-08	38.7

DBSCAN-SWA_2

101197 : 108642

Acinetobacter_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010792502.1\|101197_101776_-	TerD family protein	A0A2L1IWC0	Streptomyces_phage	5.7e-06	31.0
WP_010792503.1\|101804_102839_-	TerC/Alx family metal homeostasis membrane protein	K7QKE8	Escherichia_phage	3.1e-71	47.2
WP_010792504.1\|102850_103300_-	tellurite resistance TerB family protein	Q1MVI3	Enterobacteria_phage	1.3e-10	30.2
WP_019437801.1\|103347_104529_-	tellurium resistance protein TerA	NA	NA	NA	NA
WP_019437802.1\|104525_105119_-	TerD family protein	A0A2I7QY07	Vibrio_phage	3.1e-23	36.8
WP_019437803.1\|105121_105850_-	HAD-IB family hydrolase	NA	NA	NA	NA
WP_019437804.1\|105849_106797_-	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA
WP_019437805.1\|106796_107891_-\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	5.7e-39	34.0
WP_019437806.1\|107883_108642_-	Trehalose-6-phosphatase	A0A172Q0Q4	Acinetobacter_phage	1.9e-09	26.8

DBSCAN-SWA_3

287540 : 325509

Enterobacteria_phage(16.67%)

transposase,integrase

attL 289518:289550|attR 305771:305803

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019437638.1\|287540_289055_-\|transposase	IS21-like element ISPpu7 family transposase	K4I413	Acidithiobacillus_phage	1.5e-146	52.9
WP_155295801.1\|289182_289542_+	hypothetical protein	NA	NA	NA	NA
289518:289550	attL	NA	NA	NA	NA
WP_003150544.1\|289545_290475_-	recombinase family protein	E5FFF9	Burkholderia_phage	1.9e-40	46.9
WP_003089107.1\|290676_290916_+	hypothetical protein	NA	NA	NA	NA
WP_003150546.1\|290915_291326_+	putative toxin-antitoxin system toxin component, PIN family	NA	NA	NA	NA
WP_003299771.1\|291329_294323_+\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	5.7e-259	47.6
WP_003089113.1\|294335_294548_-	hypothetical protein	NA	NA	NA	NA
WP_003150552.1\|294555_294831_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_023383589.1\|295358_297017_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	6.4e-26	32.9
WP_003465068.1\|297365_299045_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	M4T586	Rhodobacter_phage	2.6e-06	25.4
WP_003465065.1\|299047_299956_+	AAA family ATPase	NA	NA	NA	NA
WP_003465063.1\|299952_301170_+	TniQ family protein	NA	NA	NA	NA
WP_000904941.1\|301230_301845_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	6.6e-37	50.3
WP_001087809.1\|301897_302134_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_003465059.1\|302130_302496_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000136268.1\|302512_304159_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.0e-39	28.3
WP_000654684.1\|304155_304401_-	mercury resistance system transport protein MerF	NA	NA	NA	NA
WP_000735441.1\|304403_304679_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001294667.1\|304694_305045_-	mercuric ion transporter MerT	NA	NA	NA	NA
WP_000429838.1\|305116_305551_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_023383590.1\|305827_306388_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	8.9e-57	96.0
305771:305803	attR	NA	NA	NA	NA
WP_019437225.1\|306391_309358_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	97.3
WP_080590209.1\|309334_310195_-	hypothetical protein	NA	NA	NA	NA
WP_080590210.1\|310364_312143_+	carboxylesterase family protein	A0A0G2Y6W1	Acanthamoeba_polyphaga_mimivirus	6.8e-26	35.9
WP_019437692.1\|312465_313446_-\|transposase	IS5-like element ISPpu21 family transposase	A0A077K814	Ralstonia_phage	7.7e-96	59.2
WP_155295802.1\|313461_314403_+	EDD domain protein	NA	NA	NA	NA
WP_019436593.1\|314566_314953_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_019436594.1\|315077_315917_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_019436595.1\|316105_318160_-	phenylacetic acid degradation bifunctional protein PaaZ	NA	NA	NA	NA
WP_019436596.1\|318218_319865_-	cation acetate symporter	NA	NA	NA	NA
WP_019436597.1\|319861_320170_-	DUF485 domain-containing protein	NA	NA	NA	NA
WP_019436598.1\|320321_321395_-	phenylacetate-CoA oxygenase/reductase subunit PaaK	V5UTY8	Synechococcus_phage	9.9e-12	43.6
WP_019436599.1\|321419_321953_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA
WP_019436600.1\|321939_322701_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA
WP_019436601.1\|322711_322993_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA
WP_019436602.1\|323016_324009_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA
WP_019436603.1\|324492_325509_+\|transposase	IS110 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009974

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009974_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009974_1

1383629-1383726

Orphan

Consensus_repeat	Method
GCACCGATTACTGGCTGAAATCTGTATTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009974_1

>merge|NZ_CP009974|1|1383629-1383726|CRISPRCasFinder
GCACCGATTACTGGCTGAAATCTGTATTGGCTTCTGCGGCCCTTTCGCGGGTGAACCCGCCCCTACACGCACCGATTACTGGCTGAAATCTGTGTTGG

>NZ_CP009974|1|1|1383629-1383726|CRISPRCasFinder
GCACCGATTACTGGCTGAAATCTGTATTGG	CTTCTGCGGCCCTTTCGCGGGTGAACCCGCCCCTACAC
GCACCGATTACTGGCTGAAATCTGTGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009974.1\|WP_003247607.1\|1388248_1388686_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|223976
NZ_CP009974.1\|WP_019436796.1\|1380957_1382235_+\|Zn-dependent-hydrolase	unknown	unknown	gnl\|CDD\|237250
NZ_CP009974.1\|WP_019437914.1\|1375353_1376118_+\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NZ_CP009974.1\|WP_019437913.1\|1376208_1377411_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380668
NZ_CP009974.1\|WP_014589583.1\|1386435_1386618_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|227302
NZ_CP009974.1\|WP_014589585.1\|1385333_1385798_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227070
NZ_CP009974.1\|WP_014589580.1\|1389186_1392018_-\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
NZ_CP009974.1\|WP_014589591.1\|1378338_1379358_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119323
NZ_CP009974.1\|WP_014589584.1\|1385794_1386439_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|227301
NZ_CP009974.1\|WP_004577287.1\|1387286_1388234_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
NZ_CP009974.1\|WP_004577276.1\|1373742_1374762_+\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|274513
NZ_CP009974.1\|WP_014589587.1\|1383790_1384888_-\|glycine-oxidase-ThiO	unknown	unknown	gnl\|CDD\|274092
NZ_CP009974.1\|WP_019436799.1\|1388678_1389194_-\|lipoprotein-signal-peptidase	unknown	unknown	gnl\|CDD\|234739
NZ_CP009974.1\|WP_010951877.1\|1384942_1385332_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|227303
NZ_CP009974.1\|WP_003247554.1\|1372632_1373595_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	unknown	unknown	gnl\|CDD\|183020
NZ_CP009974.1\|WP_019436798.1\|1386727_1387210_+\|type-IV-pili-biogenesis-protein-FimT	unknown	unknown	gnl\|CDD\|378793
NZ_CP009974.1\|WP_003247565.1\|1377476_1378337_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119324
NZ_CP009974.1\|WP_012051120.1\|1380109_1380805_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213191
NZ_CP009974.1\|WP_019437915.1\|1374856_1375087_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181875
NZ_CP009974.1\|WP_014589590.1\|1379357_1380110_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213186

Protein	Function_ID	Function_description	E-value
NZ_CP009974.1\|WP_003247607.1\|1388248_1388686_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	2.3483e-49
NZ_CP009974.1\|WP_019436796.1\|1380957_1382235_+\|Zn-dependent-hydrolase	gnl\|CDD\|237250	PRK12893, PRK12893, Zn-dependent hydrolase.	0
NZ_CP009974.1\|WP_019437914.1\|1375353_1376118_+\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	3.04618e-36
NZ_CP009974.1\|WP_019437913.1\|1376208_1377411_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380668	cd20378, PBP1_SBP-like, periplasmic substrate-binding domain of active transport proteins. Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.	0
NZ_CP009974.1\|WP_014589583.1\|1386435_1386618_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|227302	COG4967, PilV, Tfp pilus assembly protein PilV [Cell motility and secretion / Intracellular trafficking and secretion].	1.00706e-08
NZ_CP009974.1\|WP_014589585.1\|1385333_1385798_-\|hypothetical-protein	gnl\|CDD\|227070	COG4726, PilX, Tfp pilus assembly protein PilX [Cell motility and secretion / Intracellular trafficking and secretion].	1.67863e-08
NZ_CP009974.1\|WP_014589580.1\|1389186_1392018_-\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_CP009974.1\|WP_014589591.1\|1378338_1379358_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119323	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	1.99791e-78
NZ_CP009974.1\|WP_014589584.1\|1385794_1386439_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|227301	COG4966, PilW, Tfp pilus assembly protein PilW [Cell motility and secretion / Intracellular trafficking and secretion].	5.28587e-16
NZ_CP009974.1\|WP_004577287.1\|1387286_1388234_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	0
NZ_CP009974.1\|WP_004577276.1\|1373742_1374762_+\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	4.45117e-100
NZ_CP009974.1\|WP_014589587.1\|1383790_1384888_-\|glycine-oxidase-ThiO	gnl\|CDD\|274092	TIGR02352, Glycine_oxidase, glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	3.46967e-72
NZ_CP009974.1\|WP_019436799.1\|1388678_1389194_-\|lipoprotein-signal-peptidase	gnl\|CDD\|234739	PRK00376, lspA, lipoprotein signal peptidase.	1.51654e-70
NZ_CP009974.1\|WP_010951877.1\|1384942_1385332_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|227303	COG4968, PilE, Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion].	2.32707e-21
NZ_CP009974.1\|WP_003247554.1\|1372632_1373595_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	gnl\|CDD\|183020	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD.	2.37478e-168
NZ_CP009974.1\|WP_019436798.1\|1386727_1387210_+\|type-IV-pili-biogenesis-protein-FimT	gnl\|CDD\|378793	pfam12019, GspH, Type II transport protein GspH. GspH is involved in bacterial type II export systems. Like all pilins, GspH has an N-terminus alpha helix. This helix is followed by nine beta strands forming two beta sheets, one of five antiparallel strands and one of four antiparallel strands. GspH is a minor pseudopilin; it is expressed much less than other pseudopilins in the type II secretion pilus (major pilins). The function and localization of minor pseudo-pilins are still to be fully unraveled. It has been suggested that some minor pseudopilins may assemble either into the base or the tip of pili, or both. They function as initiators or regulators of pilus biogenesis and dynamics, and/or as adaptors between various pseudopilin component and other members of the T2SS.	1.63145e-11
NZ_CP009974.1\|WP_003247565.1\|1377476_1378337_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119324	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	4.0484e-67
NZ_CP009974.1\|WP_012051120.1\|1380109_1380805_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213191	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter. LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.	8.79692e-112
NZ_CP009974.1\|WP_019437915.1\|1374856_1375087_+\|hypothetical-protein	gnl\|CDD\|181875	PRK09459, pspG, envelope stress response protein PspG.	0.00734146
NZ_CP009974.1\|WP_014589590.1\|1379357_1380110_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213186	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system. The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).	7.61645e-112

>NZ_CP009974.1|WP_019436796.1|1380957_1382235_+|Zn-dependent-hydrolase
MNTRIDPSQHLLGQGPLVSRERLWQSLMDLAQLGATAKGGVCRLALTDLDRQARDLFVHWCEEAGCTVSVDAIGNIFARRPGRNPALPPIMTGSHIDTQPTGGKFDGCYGVMAGLEVMRTLNDLHLTTEAPLEVVVWTNEEGSRFPPCMMGSGVFAGKFGLQETLDKVDDQGLSVGAELQRIGYAGPRVPTGHAVGAYFEAHIEQGPVLEDQRTTIGVVQGCLGQKWFDLTLTGVEAHAGPTPMHLRKDALVGAAEVVAAVNRVAHAHQPHACGTVGCLTLHPGSRNVIPGQVHMTIDLRHLDPGHLDAMVSEVRAAIENSTAKHGLSYQLTPTADFPPLYFAEQCVDAVRQGARALGLSHMDIVSGAGHDAIFLAELGPAGMIFVPCEGGISHNEIENAAPQDLADGCDVLLRAMFQAANPGAR
>NZ_CP009974.1|WP_012051120.1|1380109_1380805_+|ABC-transporter-ATP-binding-protein
MLNVDSIHSYYDKSHVLEGVSLKVEAGELVTLLGRNGAGKTTTLRSILGIVRPRQGQISFNGQQLVGREIFDIARLGIALVPEHRGIFRQLSVEENLKIAVRKASRWQLEDVYSMFPRLKERRRNGGFALSGGEQQMLAIARALLNGPKLLILDEPTEGLAPVIVDELVKILRRIKDEGLSILLVEQNLMVCDALADRHYVLEQGRVAYQGSAAQFREDPSIKNRYLALSA
>NZ_CP009974.1|WP_014589590.1|1379357_1380110_+|ABC-transporter-ATP-binding-protein
MSDYLLETRQLELAYGPFKAVAGVDLKVRAGTIHTIIGPNGAGKTSLFHCLTGERQATAGKILFNGQDIIRKPSHGRVALGMARSFQLTSLFQNLSVRENLRLAAQGRDGLGALNFWRSVEHKRSHWNTADQVLERLKLSARADTLAGELSHGQQRVLEVGMSICAKPTLLMLDEPTSGMGIDDIPVMTDLISDLGRDHTVLLIEHNMSIVMSISQRITVMSHGQILVEGTPEQVRNDERVRTAYLGEAA
>NZ_CP009974.1|WP_014589591.1|1378338_1379358_+|branched-chain-amino-acid-ABC-transporter-permease
MSEKNPLPVAKGRAPALLSLVVASLVALPLLLPSATLATEILIFAMAALACNLLLGYTGLLSFGQGIFFGVGAYGAALLMIHLQWGMFAALLGAAVFGALLALLVGALAIRRTGIYFVMLTLAFSQMAYFLAYTLSDWTGGDNGLLDVPRPNIEIAGHVLVDLADPRHFYVFVAVLFLLIFAAALRVIRSPFGSTLLAIRENETRAAAIGYDTRHFKILVFMLSGAITGIAGALYAMLLHFAPLSNIDLMMSENILIMTIVGGTGSLFGSLLGAGAIVLLGDVLSELWPRWLMLLGVILILVVVFMRGGLWGGLTELGKRLLATRNADDKPQAKTKETL
>NZ_CP009974.1|WP_003247565.1|1377476_1378337_+|branched-chain-amino-acid-ABC-transporter-permease
MLDLYLFQLLNGLGLGMIYFLIAVGLTIIFGLLNFVNFAHGAFFLLGAYLCYTAVAVTGNFWLALLIAPLVVAALAWAVERLLIKRIYHLPHTFQILVTLGIALIIQEASVLIWGPVGKNIAVPPELRGVLILGDFIYPYYRLFLIGFAALIGIGLWLLLERTRFGALVRAGSESTETVSLLGTNIFRLFSLTFALGVGLAGVAGVLFAPLRGAQPFVGPEILGIAFVVVVIGGMGSFGGALVGGLLVGVVQSMMTSLWPQGASLMIYGAMAAVILVRPYGLFGRA
>NZ_CP009974.1|WP_019437913.1|1376208_1377411_+|ABC-transporter-substrate-binding-protein
MQRRTLLKAGLALGALGSLPLGAHRAFADQPLTFYGLKSMSGAFASYGKYADMGSRLAIAEHPQLLGHPLKYKVIDTEGNAGKAVRKVQEAIGQDGARFFQGCTLSSSALAVSKEIHKAGGVFMTPVGADEITGKDCNASTFRWSVPTYGAIRETLVPMSRQLPQAKRWYTITPQYVFGDALLDNARKVFAELGVEHIGNSYHSLQEQEFSGYLTNAIAAKPDVLVLLNFGSQASNALRQAVNFGIKDRMKVLMVWSAGLDQFQELGSDVLEGVYLGAQYWHQVDTPLNKQLVAATRKAYGINPNYPLAADYIGTKVMLEAIVKAGSLDGAAVSAALQGMRFQGPTGEELIRPGDHQVLKDYYLLRGKPQGQMRDEDDLAEVISSGRSFVEVNHTGCALA
>NZ_CP009974.1|WP_019437914.1|1375353_1376118_+|FadR-family-transcriptional-regulator
MLKPKRKRQKLSDVIVESVKRSIVTEALHPGDRLPTERELMEHFECSKGTAREALKALEVEGLVSTRTGPTGGAYLNEVGTEPASRALRNYLHFQHLDGEQVYQLRKVIEVELAVSVMGKLSEADYAALQANIDFCSAPEDSEEGQREQRLAELEFHTLLANRCPNPLLRFMAVFLNDLLRDLVVLKKAYLPKRQQFAAANIGYHKQLLTALRASDEPAVRRLMHEHMCDAEHHMTALEGEVARNFLLEFDHHH
>NZ_CP009974.1|WP_019437915.1|1374856_1375087_+|hypothetical-protein
MVRLLFWIALIAAAFWLWRKYKVSQQSHPEAKLDAPLKMVRCAHCGVHLPNDRALQQGNEWYCSQAHLQQGPGHQD
>NZ_CP009974.1|WP_004577276.1|1373742_1374762_+|outer-membrane-protein-assembly-factor-BamD
MRVKHLLLIAILGLTAACSSNKEVIDENLSEAELYQQAQADLDNSSYTSAVNKLKALESRYPFGRYADQAQLELIYANYKNSEPEAAKSAAERFIRLHPQHPNVDYAYYLKGLTSFDQDRGLLARFLPLDMTKRDPGAARDSYNEFAQLTSRFPNSRYAPDAKQRMIYLRNLLASYEIHVADYYLSRQAYVAAANRGRYVVENFQETPSVGDGLAVMVESYQKLHLDELAATSLETLKLNYPDHPSLVDGEFQPKQTESDGRGWLSKATLGLIETDTPLPPGETRANQDVVKQFQDARDEMPRELLPKDENGDPIVPEGPKEAEKDRSWFSYMTFGLFD
>NZ_CP009974.1|WP_003247554.1|1372632_1373595_-|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD
MSEIIQLSAEVPSELGGQRLDQVAAQLFAEYSRSRLTSWIKEGRLTVDGAVVRPRDLVHGGSLLALEAEQEAQGEWIAEDIELDIVYEDDHILVINKPAGLVVHPAAGHASGTLLNALLHHVPDIVNVPRAGIVHRLDKDTTGLMVVAKTLQAQTKLVEQMQARKVSRIYECIVIGVVTAGGKIDAPIGRHGGMRQRMAVTDGGKPAVSHYRVLKRFRSHTHVRVKLETGRTHQIRVHMAHVGFPLVGDQTYGGRFRIPPAASPTMVEAVKTFPRQALHARFLALAHPITGEVMKWESPLPDDFVWLLSLLNQDRESFIG
>NZ_CP009974.1|WP_014589587.1|1383790_1384888_-|glycine-oxidase-ThiO
MSKQVVVVGGGVIGLLTAFNLAAKVGQVVVCDQGEVGRESSWAGGGIVSPLYPWRYSPAVTALAHWSQDFYPQLGERLFASTGVDPEVHTTGLYWLDLDDEAEALAWAVREQRPLSAVDISAAYDAVPVLGPGFKHAIYMAGVANVRNPRLVKSLKAALLALPNVTLREHCQISGFVQEKGRVTGVQTADGVLAADEVVLSAGAWSGDLLRTLGLELPVEPVKGQMILFKCAEDFLPSMVLAKGRYAIPRRDGHILVGSTLEHAGYDKTPTGDALESLKASAVELLPELEGATVVAHWAGLRPGSPEGIPYIGPVPGHEGLWLNCGHYRNGLVLAPASCQLFTDLLTGAEPIIDPAPYAPEGRLG
>NZ_CP009974.1|WP_010951877.1|1384942_1385332_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MQQGLSLIELLIVLAVTGILAAIAYPSYSDQLRRAARSEVVGLLHDAALRLERHRVRTGQYAEGDLVLPEGTRYYSLQAQRDSDTFTLRARRLPHGLMAQDGCGDFQLDQAGVQHNPGAVEHSTHCWGS
>NZ_CP009974.1|WP_014589585.1|1385333_1385798_-|hypothetical-protein
MTHQRGVVLLLALVLSVLLGLLATSALRDALVETRMTGYLSDGLMALEEAEATLLAGVRELERAPPDVCNACLPPPRPHDLVGQWQGTQTGFFQLQNLGVSTRAAHMPEGQPVSLFRITAVSKQSRSRHVLEAVYAVAGNQTQRITWRQRLRGD
>NZ_CP009974.1|WP_014589584.1|1385794_1386439_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MRRGQRGFGLVELMLALTIGLMLLAAASQLFASAHQAWRLQSTALRMQDEARQALLRMAQDIRMAGMFGCLRLKPSDFDDPALQQVFARPLVIEASTLSLIVAELPGQAGRPDWFLHTNCLTEVSVDEARKAGDPLVYPVSRYVYQLQDDKLRFKRGNSKFQPLVDNVQAMRVERVQMVGGERVDISLTLYEPTLKVQQRHELSVAIRNPVPAS
>NZ_CP009974.1|WP_014589583.1|1386435_1386618_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MHERQGGMTLLEVLLAVVVVAVGMFAAAGLQLQALQAVDSARRNGQAAMAAHSEHERGRR
>NZ_CP009974.1|WP_019436798.1|1386727_1387210_+|type-IV-pili-biogenesis-protein-FimT
MKQRGVTLIQMLSALAVAVLLTQLGMPAYARMSDDLHRAAAARDLAQALRSARSHALLQGQPVLVLALDGNWGNGWRVVLEHNRQVLREQRLPKPLKITSNRGEQFKFSALGVPMTLGNSWLGATLEMCERAAARSRYQVVLASSGRVRLLTEDLSNDRC
>NZ_CP009974.1|WP_004577287.1|1387286_1388234_-|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MQIKLANPRGFCAGVDRAIEIVNRALEVFGPPIYVRHEVVHNKFVVEDLRNRGAIFVEELDQVPDDVIVIFSAHGVSQAVRQEAAGRGLKVFDATCPLVTKVHIEVAKYSRDGRECILIGHEGHPEVEGTMGQYDASNGGAIYLVEDEEDVANLQVRDPNHLAFVTQTTLSMDDTSRVIDALRARFPNIGGPRKDDICYATQNRQDAVKQLAGESDVVLVVGSPNSSNSNRLRELAERMGTPAYLIDGAEDMQRGWFDQTARIGITAGASAPEVLVRGVIEQLKAWGATGAEELDGREENITFSMPKELRVRSLI
>NZ_CP009974.1|WP_003247607.1|1388248_1388686_-|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MTDTRIGQNTEVTLHFALHLENGDTVDSTFDKAPATFKVGDGNLLPGFENALFGFKAGDKRTVVVAPENAFGQPNPQNVQVMPRSNFEGMELSEGLLIIFNDAANTELPGVVKAFDDDQVTIDFNHPLAGKTLTFEVEILEVKAL
>NZ_CP009974.1|WP_019436799.1|1388678_1389194_-|lipoprotein-signal-peptidase
MPNPAAGRFGRLAWLWLSLLVLVVDQATKLYFNNALTMYQQIVVIPDYFSWTLAYNTGAAFSFLADGAGWQRWLFAVIAVVVSAVLVVWLKRLGRNETWLAVALALVLGGAIGNLYDRIVLGHVVDFILVHWQNRHYFPAFNVADSAITVGAVMLALDMFKSKKSEDPVHD
>NZ_CP009974.1|WP_014589580.1|1389186_1392018_-|isoleucine--tRNA-ligase
MTDYKATLNLPDTAFPMKAGLPQREPQILQRWDSIGLYQKLREIGKDRPKFVLHDGPPYANGKIHIGHALNKILKDMIVRSKTLAGFDAPYVPGWDCHGLPIEHKVEVTHGKHLSADRTRELCREYAAEQIEGQKTEFIRLGVLGDWDNPYKTMNFANEAGEIRALAEMVKQGFVFKGLKPVNWCFDCGSALAEAEVEYADKKSQTIDVAFPVADEAKLAAAFGLASLAKPAAIVIWTTTPWTIPANQALNIHPEFKYALVDTGERLLVLAEELVESCLKRYNLEGSVVATAQGSALELINFRHPFYDRLSPIYLADYVELGAGTGVVHSSPAYGEDDFVTCKRYGMVNDDILTPVQSNGVYVESLPFFGGQFIWKANPAIVEKLSEVGALMHTETISHSYMHCWRHKTPLIYRATAQWFVGMDKQPSTGEPLRERALKAIEDTKFVPAWGQARLHAMIANRPDWCISRQRNWGVPIPFFLHKQTGELHPRTVELMEEVAKRVEQQGIEAWFKLDAAELLGAEADQYDKIADTLDVWFDSGTTHWHVLRGSHDIGHATGPRADLYLEGSDQHRGWFHSSLLTGCAIDNHAPYRELLTHGFTVDENGRKMSKSLGNTIEPEKVNNTLGADILRLWVSATDYSGEMAVSEQILQRSADAYRRIRNTARFLLSNLSGFDPARDLLAPEDMLALDRWAVDRTLLLQRELEEHYSEYRFWNVYSKVHNFCVQELGGFYLDIIKDRQYTTGANSVARRSCQTALYHISEALVRWIAPILAFTADEIWQYLPGERNESVMLNGWYQGLSELPEGTELDRAYWDRVMAVKASVNKELENQRTAKVIGGNLQAEVTLYADEGLSADLGKLGDELRFVLITSAASVVPFAQAPAEAVATEVEGLKLQVVKSGHTKCGRCWHFRADVGSHPEHPEICGRCVDNLTGSGEVRHYA

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Crispr_ID: NZ_CP009974_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009974_2

2420905-2421013

Orphan

Consensus_repeat	Method
GGGGCTGCTCTGCAGCCCTTCGCGGGTGAACCCGCTCCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009974_2

>merge|NZ_CP009974|2|2420905-2421013|CRISPRCasFinder
GGGGCTGCTCTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGCCGCAGGGGGGCAGAGATTGTTGGGGCTGCTTTGCAGCCCTTCGCGGGTGAACCCGCTCCTAC

>NZ_CP009974|2|2|2420905-2421013|CRISPRCasFinder
GGGGCTGCTCTGCAGCCCTTCGCGGGTGAACCCGCTCCTAC	GGGGGCCGCAGGGGGGCAGAGATTGTT
GGGGCTGCTTTGCAGCCCTTCGCGGGTGAACCCGCTCCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009974.1\|WP_019436571.1\|2420380_2420896_+\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|365932
NZ_CP009974.1\|WP_019436575.1\|2429833_2430646_+\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	unknown	unknown	gnl\|CDD\|234899
NZ_CP009974.1\|WP_004575470.1\|2427639_2428836_-\|class-I-SAM-dependent-rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|224017
NZ_CP009974.1\|WP_023389399.1\|2423795_2424464_-\|NAD(P)H-dehydrogenase	unknown	unknown	gnl\|CDD\|224103
NZ_CP009974.1\|WP_019439122.1\|2409593_2410037_-\|cadmium-resistance-transcriptional-regulator-CadR	unknown	unknown	gnl\|CDD\|131102
NZ_CP009974.1\|WP_019436574.1\|2428957_2429830_+\|HDOD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224554
NZ_CP009974.1\|WP_019439123.1\|2410120_2412379_+\|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319845
NZ_CP009974.1\|WP_019436570.1\|2418934_2420326_-\|DUF2868-domain-containing-protein	unknown	unknown	gnl\|CDD\|378549
NZ_CP009974.1\|WP_014592749.1\|2413489_2414548_+\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NZ_CP009974.1\|WP_014592743.1\|2421095_2422487_-\|L-cystine-transporter	unknown	unknown	gnl\|CDD\|224736
NZ_CP009974.1\|WP_014861500.1\|2424602_2425457_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP009974.1\|WP_003249063.1\|2430807_2431059_-\|YfhL-family-4Fe-4S-dicluster-ferredoxin	unknown	unknown	gnl\|CDD\|235941
NZ_CP009974.1\|WP_003249056.1\|2425527_2427369_-\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|237104
NZ_CP009974.1\|WP_010955660.1\|2431160_2431646_-\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
NZ_CP009974.1\|WP_019439124.1\|2412388_2413258_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|132382
NZ_CP009974.1\|WP_019439125.1\|2414549_2416274_+\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NZ_CP009974.1\|WP_003249029.1\|2408503_2409475_+\|thymidylate-synthase	unknown	unknown	gnl\|CDD\|184347
NZ_CP009974.1\|WP_014592746.1\|2417577_2418942_-\|GTPase/DUF3482-domain-containing-protein	unknown	unknown	gnl\|CDD\|371831
NZ_CP009974.1\|WP_014592742.1\|2422731_2423787_+\|phosphorylcholine-phosphatase	unknown	unknown	gnl\|CDD\|319801
NZ_CP009974.1\|WP_014592747.1\|2416292_2417318_+\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494

Protein	Function_ID	Function_description	E-value
NZ_CP009974.1\|WP_019436571.1\|2420380_2420896_+\|dihydrofolate-reductase	gnl\|CDD\|365932	pfam00186, DHFR_1, Dihydrofolate reductase.	1.03851e-77
NZ_CP009974.1\|WP_019436575.1\|2429833_2430646_+\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	3.20086e-164
NZ_CP009974.1\|WP_004575470.1\|2427639_2428836_-\|class-I-SAM-dependent-rRNA-methyltransferase	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	2.70038e-134
NZ_CP009974.1\|WP_023389399.1\|2423795_2424464_-\|NAD(P)H-dehydrogenase	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	1.3202e-37
NZ_CP009974.1\|WP_019439122.1\|2409593_2410037_-\|cadmium-resistance-transcriptional-regulator-CadR	gnl\|CDD\|131102	TIGR02047, putative_regulatory_protein, Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix. [Regulatory functions, DNA interactions].	1.1089e-69
NZ_CP009974.1\|WP_019436574.1\|2428957_2429830_+\|HDOD-domain-containing-protein	gnl\|CDD\|224554	COG1639, COG1639, Predicted signal transduction protein [Signal transduction mechanisms].	1.53958e-77
NZ_CP009974.1\|WP_019439123.1\|2410120_2412379_+\|heavy-metal-translocating-P-type-ATPase	gnl\|CDD\|319845	cd07545, P-type_ATPase_Cd-like, P-type heavy metal-transporting ATPase, similar to Staphylococcus aureus plasmid pI258 CadA, a cadmium-efflux ATPase. CadA from gram-positive Staphylococcus aureus plasmid pI258 is required for full Cd(2+) and Zn(2+) resistance. This subfamily also includes CadA, from the gram-negative bacilli, Stenotrophomonas maltophilia D457R, which is a cadmium efflux pump acquired as part of a cluster of antibiotic and heavy metal resistance genes from gram-positive bacteria. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP009974.1\|WP_019436570.1\|2418934_2420326_-\|DUF2868-domain-containing-protein	gnl\|CDD\|378549	pfam11067, DUF2868, Protein of unknown function (DUF2868). Some members in this family of proteins with unknown function are annotated as putative membrane proteins. However, this cannot be confirmed.	2.49356e-101
NZ_CP009974.1\|WP_014592749.1\|2413489_2414548_+\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP009974.1\|WP_014592743.1\|2421095_2422487_-\|L-cystine-transporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
NZ_CP009974.1\|WP_014861500.1\|2424602_2425457_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	3.17889e-36
NZ_CP009974.1\|WP_003249063.1\|2430807_2431059_-\|YfhL-family-4Fe-4S-dicluster-ferredoxin	gnl\|CDD\|235941	PRK07118, PRK07118, Fe-S cluster domain-containing protein.	6.61691e-07
NZ_CP009974.1\|WP_003249056.1\|2425527_2427369_-\|dihydroxy-acid-dehydratase	gnl\|CDD\|237104	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional.	0
NZ_CP009974.1\|WP_010955660.1\|2431160_2431646_-\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	3.72241e-105
NZ_CP009974.1\|WP_019439124.1\|2412388_2413258_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|132382	TIGR03339, phn_lysR, aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466). [Regulatory functions, DNA interactions].	4.31914e-129
NZ_CP009974.1\|WP_019439125.1\|2414549_2416274_+\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP009974.1\|WP_003249029.1\|2408503_2409475_+\|thymidylate-synthase	gnl\|CDD\|184347	PRK13821, thyA, thymidylate synthase; Provisional.	0
NZ_CP009974.1\|WP_014592746.1\|2417577_2418942_-\|GTPase/DUF3482-domain-containing-protein	gnl\|CDD\|371831	pfam11981, DUF3482, Domain of unknown function (DUF3482). This presumed domain is functionally uncharacterized. This domain is found in bacteria and eukaryotes. This domain is typically between 289 to 301 amino acids in length. This domain is found associated with pfam01926. The central region of these proteins contains a hydrophobic region that is similar to pfam05433.	3.9337e-129
NZ_CP009974.1\|WP_014592742.1\|2422731_2423787_+\|phosphorylcholine-phosphatase	gnl\|CDD\|319801	cd04309, HAD_PSP_eu, phosphoserine phosphatase eukaryotic-like, similar to human phosphoserine phosphatase. Human PSP, EC 3.1.3.3, catalyzes the third and final of the L-serine biosynthesis pathway, the Mg2+-dependent hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, L-serine is a precursor for the biosynthesis of glycine. HPSP regulates the levels of glycine and D-serine (converted from L-serine), the putative co-agonists for the glycine site of the NMDA receptor in the brain. Plant 3-PSP catalyzes the conversion of 3-phosphoserine to serine in the last step of the plastidic pathway of serine biosynthesis. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	0.000795611
NZ_CP009974.1\|WP_014592747.1\|2416292_2417318_+\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0

>NZ_CP009974.1|WP_019436571.1|2420380_2420896_+|dihydrofolate-reductase
MNTSLPLSLIAAYAENRVIGIDNSMPWHLPGDFKYFKATTLGKPIIMGRKTWDSLGRPLPGRLNIVVSRQPGLELAGAEVFASLEEALVRAEQWARGQGVGELMLIGGAQLYGQALEKGLVSRMYLTRVELAPEGDAWFPAFDEGQWRLTSSEVQAEEGKPVYHFEVWDKG
>NZ_CP009974.1|WP_019436570.1|2418934_2420326_-|DUF2868-domain-containing-protein
MEDLVTAPTPLDKRWLTEAVRLREEHAGPLEDQEANRHARQLGGDLATRIETRALFLAERDDMTGALRHWKQGARLALLALLLLAVLSGAGLGLAALGDGQRPVNVFWALGSLLGLNLLMLLGWAMGFALSGEHGAGLGRLWLWLSERFARDAKAAHLAPALLVLLQRQRLNRWLLGLLVHGLWLLAMFTALGMLLALLATRRYGFVWETTLLAAEPFIHLTQALGALPSLLGFAVPDEAMIRASGDSLPALDMARQAWASWLLGVVLVYGLLPRLLLAGLCLWRWRQGRERLTLDLGLPGYAQLREALMPRSERIGVQDAAPQALPQFAAGQLESGSSGALLVGLELDDQRPWPPALPKSVTDAGVLDSRESRNRLLEQLSRFPPARLAIACDPRRSPDRGSLALLAELARNAGATRIWLLQAAPGQPLDAERLGDWHEALDRLGLQHADTSPLTWLEHGHD
>NZ_CP009974.1|WP_014592746.1|2417577_2418942_-|GTPase/DUF3482-domain-containing-protein
MTEPLKLAVVGHTNVGKTSLLRTLTRDVGFGEVSHRPSTTRHVEGARLSVDGEPLLELYDTPGLEDAIALLDYLERLERPGERLDGPARLERFLQGSEARQRFEQEAKVLRQLLASNAGLYVIDAREPVLAKYRDELEVLANCGKPLLPVLNFVASSQHREPEWREALARLGLHALVRFDSVAPPEDGERRLYESLALLLENARPALQRLIDDQQAQRLARRHSGKRLIAELLLDCAACRRSVEAEPAAEARAIEALRQDIRQREQRCVEALLKLYAFRREDAHASDLPLLDGRWGDDLFNPETLKLLGVRLGSGVAAGAAAGAGVDLLVGGLTLGAAALAGAIAGGALQTARNYGSRLMGKLKGKRELTVDDTVLRLLALRQQQLMVALDNRGHAAQDSIRLGELDEKAWREGKLPEALVKARAHPQWSTLNPGAKLNQAERQEQLEALVSQI
>NZ_CP009974.1|WP_014592747.1|2416292_2417318_+|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MHKHLALAVAVSAVFSLQASAADTQLTVYTALEAEQLKTYKQAFEKANPDIEIKWVRDSTGIITAKLLAEKERPQADAVWGLAASSLAILDQNGMLEAYAPKDLGKISGNYRDAANPPAWVGMDVWAATICFNTIEAEKQGLSKPVSWQDLTKPEYKGKIVMPNPASSGTGFLDVSAWLQTFGEPQGWAYMDALHQNIGQYVHSGSKPCKLAAAGEFPIGISFEYPAVQLKRQGAPLDIVLPKEGLGWEIEATAVIKGSPKADAAKRLADFSASPAAMELYKENFAVLAAPGIAKPQTELPADYEQRLIKNDFAWASKNRDQILAEWRKRYDGKSEKVAQQ
>NZ_CP009974.1|WP_019439125.1|2414549_2416274_+|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MAAPMSLPLSQAKAAPRAGFALGDRLFVVGGKSLLLILLVLAVLMPLLAIFWRGFSGEAGQGGGLLAARELFASDNFHWLLGNSLSVAFTVAAIVVPLAYLFAYALQRTLIPVKGLWRGISLLPLLAPSMLPAIALVYLFGNQGLLRGLFSDNIYGFWGIVLGEAIYTFPHALMILLSALSLADARLFDAAHSMGAGSWRAFTSITWPASRQAVFAAFCLVFTLTITDFGVPVVVGGDYQVLALEAYKAVVGQQQFGRGALIGMVLLLPALFSFTVDAWLRRRQGEAMGGRAQVFEPKPSRGRDACFLTIVLLVCAALLVVIGMAVYSSLVTFWPYNLSLSLRHYMFEDTAGGGWLAYRNSVTMAIGTALIGSIVIFTGAYLMEKTQGQRLLNHALRLLSFIPMAVPGLVLGLGYVFFFNLNGNPLHVLYGGMGLLVVCTIAHYLTTAQMTATTALRQLDGEFEAAALSLKAPLYRHFVRVTVPICLPALLDIIRYLFVSAMTTVSAAIFLYSPDTILAAVAVLNMDDAGNVGGAAAMSTLILLTSAGASLLLAAASRGLLRRSQAWRQRAATV
>NZ_CP009974.1|WP_014592749.1|2413489_2414548_+|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MNHTTPGAQIKVRNIHKCFGAFTALNDVSLDIAAGELVCLLGPSGCGKTTLLRCIAGLERQDRGTLYIGERDISDLSPQARDYGILFQSYALFPNLTVEANIAYGLSGSGREQARQRVAEMLELVGLSGSEKKYPGQLSGGQQQRVALARALAPSPSLLLLDEPMSALDARVREHLCTELRQLQRQLGITTLMVTHNQDEAMLMADRIAVMNNGQVEQYATPQEIYDHPATPFVAEFVGQGNWLPFQRSSDSHAQVGDMNMRLAPGSAQASSGRLFCRPEAITVNPVVHEENLFPAMVREITFLGNRCRMSFELKALPGHALLAELAPEAMPRLGSQDIWVALPPQSLQVFA
>NZ_CP009974.1|WP_019439124.1|2412388_2413258_+|LysR-family-transcriptional-regulator
MLSSELKAFYMVARLGSITQAAKKLGLSQPTVTTQIRSLEGQYAVELFYRGGRRLVLSEEGLRLLPMVKALLQQEADIEFELRNSGQAQGSLRIAATAPYYILDLVKIYRERLPRVEVAVEIGNSQQVLEMLEDYRVDIAASSQWVEDARLVRRILGTDPLVVAVHRNHPLAHRQTVSIEVVSGHCLLMREKGSTTRKLTEQMMQEAGVKASAMMEIGSRESIREAVLRNIGISVIARHEVPHNPELRVLALENAPVMHEYLYCLKERRQARLPAAFLGVAQEVAGSQF
>NZ_CP009974.1|WP_019439123.1|2410120_2412379_+|heavy-metal-translocating-P-type-ATPase
MNQPVSHEHKHPHDHDHDHGDDDHGHAAHAHTCCGAKAVPPLVQLSETASAQAQLSRFRIDAMDCPTEQTLIQDKLSKLAGIEQLEFNLINRVLGVRHTLDGTADIERAIDSLGMKAEPIAAQDDGSVSVPQPAKARWWPLALSGVAAIAAEIVHFAALAPEWMVAGLALAAILGCGLGTYKKGWIALKNRNLNINALMSIAVTGAVLIGQWPEAAMVMVLFTVAELIEARSLDRARNAIGGLMQLTPDMATVQQADGQWRELDVREVAVGALVRVRPGERIGLDGEVTSGQSSVDQAPITGESLPVEKGVGDKLFAGTINQAGALEFRVTAAAGQSTLARIIKAVEEAQGARAPTQRFVDRFSRIYTPVVFAIALAVALIPPLFMAGAWFDWIYRALVLLVVACPCALVISTPVTIVSGLAAAARKGILIKGGVYLEGGRHLDFLALDKTGTITHGKPVQTDAKVLTPLFEDRAQALAASLGERSDHPVSRAIAEFGKQQGLALSEVSDFVALAGRGVRGVIAGEVYHLGNHRLVEELGLCSPALEAQLDALERQGKTVVLLLDRSGPLALFAVADTVKDSSRQAIAELHQLGIKTVMLTGDNPHTAQAIAAVVGIDRAEGNLLPADKLRTIEALYAQGHRVGMVGDGINDAPALARAEIGFAMAAAGTDTAIETADVALMDDDLRKIPAFVRLSRQSAAILMQNIVLALGIKAIFLAITFAGMATMWMAVFADMGVSLLVVFNGLRLLRK
>NZ_CP009974.1|WP_019439122.1|2409593_2410037_-|cadmium-resistance-transcriptional-regulator-CadR
MKIGELAKATDCAVETIRYYERENLLPEPARSEGNYRLYTQAHVERLTFIRNCRTLDMTLDEIRSLLRLRDSPADACGSVNALIDEHIEHVQARIDGLVALQEQLVELRRRCNAQGSECAILQQLETNGAVSVPDTEHSHVGRSHGH
>NZ_CP009974.1|WP_003249029.1|2408503_2409475_+|thymidylate-synthase
MKQYLDLVRDVIDNGTLQGNRTGIRTISLPGAMLRFDLQKGFPAITTRKLAFKSAIGEMVGFLRGVKNAGEFRELGCKVWDQNANENAQWLANPFRQGHDDLGEIYGVQWRQWPGYKRIPLSNPAAIEMAEQAGFRRIAQDEEDGVAFVILYKAIDQVRQCLDTIANDPGSRRILFHGWNCAQLDEMALPPCHLLYQFHPNVETREISLTLYIRSNDLGLGTPFNLTEGAALLSLFGRLTGYTPRWFTYFIGDAHVYENHLDMLNEQLKREPLEAPKLVISDRVPSFAETGKYEPEWLEKIEPSDFWLEGYEHHAPMTAPMAV
>NZ_CP009974.1|WP_014592743.1|2421095_2422487_-|L-cystine-transporter
MNLPLSLNLLAFLALLLGLAQTRRTDWSLAKKVLLGLVLGVVFGLVLHTIYGAGHPVLKATIAWLDLVGNGYVGLLQMIVMPLIFASILSAVARLHTASSLGRISVLSIGTLLLTTAIAALIGIVLTNLFGLSAEGLVAGVQESARMQVIHSDYAGKVADLNIPQLLLSFIPSNPVGDLARAKPTSIISVVIFAVFLGLAALQLIKDDAEKGERALSAIDTLQAWVMRLVRVVMKLTPYGVLALMTKVVASSNTEDILKLGSFVVVSYLGLGLMFVVHGIILAATGVSPLRFFRKVWPVLTFAFTSRSSAASIPLNIEAQTRRLGVPQSIASFSASFGTTIGQNGCAGLYPAMLAVMVAPAVGIDTFDPLWIATLVAIVTLSSAGVAGVGGGATFAALIVLPAMGLPVELVALLISVEPLIDMGRTALNVNGSMTAGVVTSQLLKETDKEVLAGDEHAELSHT
>NZ_CP009974.1|WP_014592742.1|2422731_2423787_+|phosphorylcholine-phosphatase
MKVAAKAAAIGLSLLFSIETFATELKHWPADAAKQLDSMIAANANKGNYAVFDMDNTSYRYDLEEALLPFMENKGLLSRDKLDPSLKLMPFKDTAEHKESLFSYYYRLCEIDDMVCYPWVAQVFSGFTLQELKVQVDELMASTKPIPSTYYEGDQVKAIEVQPPKVFKGQAELYNKLMENGIDVYVISAASEELVRMVASDPKYGYNVKPQNVIGVSLLLKDRASGQLTTARKQISAGHYDAKANEGLELTPYLWTPATWMAGKQAAILTYIDEWKKPVLVGGDTPTSDGYMQFHGVDVGKGGIHLWINRKAKYMDQLNGMIAKNAAAQAKEGLPVTADKNWVIVTPEQIQ
>NZ_CP009974.1|WP_023389399.1|2423795_2424464_-|NAD(P)H-dehydrogenase
MVERILYVCASPRGERSVSAQITDAFLAALAERKAVEIDHLNPWECDLPEVDGALLAAKYAGLGDAPLSTAQAAAWDRIKTLAQRFHRADTLVFSVPLWNFGIPYKLKHLIDAISHKDVLFTFDEHGLNGMLGGRRAVAIYTRGLGYGPTSQTPDQFFGLEKTFIDTWFRFVGINQAHSVVVEQTLGPEGARIRERAIEQVTLLAKNIDQKAAQTLIVGRDG
>NZ_CP009974.1|WP_014861500.1|2424602_2425457_+|LysR-family-transcriptional-regulator
MFDTVLLRSLIAVADTGGFTRAAHRLHLTQSAISAHIRRLEREAGQKLLERTTRSVSLTPAGARLAGYARTILALHDDARASLGAGRRVSGTVYVGLSEEMVKAPIIDCMRRFSVAHPDAEVSLTVGLTGELLSLVHSGGLDIVLGSRCSDEERGEVLWSEPLVWARGPIALGSDEVTTPVPLAVFSDQCPYRAAAIEALVRAGRQWRIVCQSPSVGGLMTAVSGGLGVTPVTRSSALAAGLVEVSTLPALPQAQFVLTSAATPKRSAALLLAQLRQCVAKGEL
>NZ_CP009974.1|WP_003249056.1|2425527_2427369_-|dihydroxy-acid-dehydratase
MPDYRSKTSTQGRNMAGARALWRATGMKDEDFKKPIIAIANSFTQFVPGHVHLKDLGQLVAREIERAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSREIIADAVEYMVNAHCADAIVCISNCDKITPGMLMAALRLNIPVIFVSGGPMEAGKTKLASHGLDLVDAMVIAADSTASDEKVAEYERSACPTCGSCSGMFTANSMNCLTEALGLALPGNGSTLATHSDREQLFLTAGRTIVELCKRYYGENDESVLPRSIANFKAFENAMMLDIAMGGSTNTILHLLAAAQEGEVAFDLRDIDRLSRKVPQLCKVAPNIQKYHMEDVHRAGGIFSILGSLARGGLLHTDLPTVHSRSMEEAIAKWDITQTDDEAVHTFFKAGPAGIPTQTAFSQSTRWETLDDDRENGCIRSFEHAYSQEGGLAVLYGNIALDGCVVKTAGVDESIHVFEGTAKIFESQDSAVRGILADEVKAGDIVIIRYEGPKGGPGMQEMLYPTSYLKSKGLGKACALLTDGRFSGGTSGLSIGHASPEAAAGGAIGLVRDGDKVLIDIPNRSINLLVSDEELAERRVEQDKKGWKPAEVRPRKVTTALKAYALLATSADKGAVRNKAMLEGL
>NZ_CP009974.1|WP_004575470.1|2427639_2428836_-|class-I-SAM-dependent-rRNA-methyltransferase
MSLPSLRLKANADRRLRAGHLWVYSNEVDVSATPLQGFQAGQQAILEAANGKPLGIVALSPNNLICARLLSRDIKLPLDKSLLVHRLNVALSLRERLFDQPCYRLVYGDSDLLPGLVVDRFFDILVVQLASATMEAHKDDVIAALVQVLKPSGILFKNDSAARDAEGLQRYVETVYGEVPDWVPLEENGVKFEAPVREGQKTGWFYDHRMNRARLAPYVKGKRVLDLFSYIGGWGVQAGAFGASEVFCVDASGFALDGVERNAALNGISEKLTCIEGDVFEALRELKAAEERFDVIIADPPAFIKRKKDLKNGEAAYRRLNEQAMRMLNKDGILVSASCSMHLPEDDLNNILLTSARHLDRNMQLLERGGQGPDHPVHPAIAETRYIKSITCRLLPNS
>NZ_CP009974.1|WP_019436574.1|2428957_2429830_+|HDOD-domain-containing-protein
MSQELSAEQIQQALQGITIPPQPQIMVDLQFEQYMPDPDLETIAKLISQDPGLSGALLKLVNSPHFGLSNKIGSIQRAVNLLGSRSIINLINAQSIKGEMSDETIVTLNRFWDTAQDVAMTCLTLAKRTGIQAADEAYTLGLFHDCGVPLMLKRFPDYMDVLEEAYAKADEETRVVDTENRTFNTNHSVVGYFTAKSWRLPEHLTAAIANHHNALAVFRDDTSRNTQSQLKNLLAVLKMAEHICASYRVLGNQSVDHEWNAVGPLVLDYIGLSEYDFENLKQNIRELGGH
>NZ_CP009974.1|WP_019436575.1|2429833_2430646_+|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase
MPELPEVETTRRGIAPHLEGQRVSRVVVRDRRLRWPIPEDLDVRLSGQRIVSVERRAKYLLINAEVGTLISHLGMSGNLRLVELGLPAAKHEHVDIELESGLMLRYTDPRRFGAMLWSLDPLNHELLLRLGPEPLTDLFDGERLFQLSRGRSMAVKPFIMDNAVVVGVGNIYATEALFAAGIDPRREAGGISRARYLKLAIEIKRGLAAAIEQGGTTLRDFIGGDGQPGYFQQELFVYGRGGQPCKVCGTELREVKLGQRASVYCPRCQR
>NZ_CP009974.1|WP_003249063.1|2430807_2431059_-|YfhL-family-4Fe-4S-dicluster-ferredoxin
MSLIITDDCINCDVCEPECPNEAISQGEEIYVIDPNLCTQCVGHYDEPQCQQVCPVDCIPLDEAHPETEEQLMAKYRRITGKG
>NZ_CP009974.1|WP_010955660.1|2431160_2431646_-|pantetheine-phosphate-adenylyltransferase
MNRVLYPGTFDPITKGHGDLVERASRLFDHVIIAVAASPKKNPLFPLEQRVELAREVTKHLPNVEVIGFSSLLAHFAKEQGANVFLRGLRAVSDFEYEFQLANMNRQLAPDVESLFLTPSERYSFISSTLVREIAALGGDISKFVHPVVADALTERFKKQA

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Crispr_ID: NZ_CP009974_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009974_3

3143834-3143990

Orphan

Consensus_repeat	Method
GCGCCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGCAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009974_3

>merge|NZ_CP009974|3|3143834-3143990|CRISPRCasFinder
GCGCCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGCAAAAATATTCTCAGGCAACAGGTGAAGTAACAGCAGGTGGCCTCCGTGTAATGGTCGCGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGCAAAAA

>NZ_CP009974|3|3|3143834-3143990|CRISPRCasFinder
GCGCCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGCAAAAA	TATTCTCAGGCAACAGGTGAAGTAACAGCAGGTGGCCTCCGTGTAATGGTCGC
GCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGCAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009974.1\|WP_014592328.1\|3141907_3142234_+\|DUF3325-domain-containing-protein	unknown	unknown	gnl\|CDD\|371735
NZ_CP009974.1\|WP_019437546.1\|3144089_3146480_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273805
NZ_CP009974.1\|WP_019437550.1\|3140028_3140334_+\|DUF3649-domain-containing-protein	unknown	unknown	unknown
NZ_CP009974.1\|WP_019437545.1\|3146509_3147385_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP009974.1\|WP_019437544.1\|3147570_3148473_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|183067
NZ_CP009974.1\|WP_019438408.1\|3152501_3154679_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|377393
NZ_CP009974.1\|WP_019437549.1\|3140330_3141908_+\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|377164
NZ_CP009974.1\|WP_019438407.1\|3150975_3152505_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NZ_CP009974.1\|WP_003251685.1\|3138539_3139010_+\|phosphate-starvation-inducible-protein-PsiE	unknown	unknown	gnl\|CDD\|225764
NZ_CP009974.1\|WP_009685040.1\|3154668_3154869_+\|DUF1656-domain-containing-protein	unknown	unknown	gnl\|CDD\|377931
NZ_CP009974.1\|WP_014592331.1\|3139424_3139772_-\|HPF/RaiA-family-ribosome-associated-protein	unknown	unknown	gnl\|CDD\|376795
NZ_CP009974.1\|WP_026031873.1\|3139013_3139304_-\|DUF3509-domain-containing-protein	unknown	unknown	gnl\|CDD\|338217
NZ_CP009974.1\|WP_019438409.1\|3155811_3156264_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|238182
NZ_CP009974.1\|WP_003251712.1\|3149835_3150783_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP009974.1\|WP_010955279.1\|3136460_3137480_+\|Glu/Leu/Phe/Val-dehydrogenase	unknown	unknown	gnl\|CDD\|223411
NZ_CP009974.1\|WP_004575355.1\|3154879_3155740_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP009974.1\|WP_019437547.1\|3142811_3143792_+\|DUF4880-domain-containing-protein	unknown	unknown	gnl\|CDD\|226235
NZ_CP009974.1\|WP_023390296.1\|3142239_3142815_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274376
NZ_CP009974.1\|WP_014592323.1\|3148684_3149659_-\|D-glycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|240626
NZ_CP009974.1\|WP_014592333.1\|3137535_3137799_-\|YebG-family-protein	unknown	unknown	gnl\|CDD\|377779

Protein	Function_ID	Function_description	E-value
NZ_CP009974.1\|WP_014592328.1\|3141907_3142234_+\|DUF3325-domain-containing-protein	gnl\|CDD\|371735	pfam11804, DUF3325, Protein of unknown function (DUF3325). This family of short proteins are functionally uncharacterized. This family is restricted to Alpha-, Beta- and Gamma-proteobacteria.	2.95743e-21
NZ_CP009974.1\|WP_019437546.1\|3144089_3146480_+\|TonB-dependent-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	5.73489e-111
NZ_CP009974.1\|WP_019437545.1\|3146509_3147385_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.33479e-31
NZ_CP009974.1\|WP_019437544.1\|3147570_3148473_+\|EamA-family-transporter	gnl\|CDD\|183067	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional.	4.6286e-16
NZ_CP009974.1\|WP_019438408.1\|3152501_3154679_+\|FUSC-family-protein	gnl\|CDD\|377393	pfam04632, FUSC, Fusaric acid resistance protein family. This family includes a conserved region found in two proteins associated with fusaric acid resistance, FusC from Burkholderia cepacia and fdt-2 from Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.	0
NZ_CP009974.1\|WP_019437549.1\|3140330_3141908_+\|PepSY-domain-containing-protein	gnl\|CDD\|377164	pfam03929, PepSY_TM, PepSY-associated TM region. The PepSY_TM family is so named because it is an alignment of up to five transmembranes helices found in bacterial species some of which carry a nested PepSY domain, pfam03413.	2.58697e-70
NZ_CP009974.1\|WP_019438407.1\|3150975_3152505_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	1.128e-90
NZ_CP009974.1\|WP_003251685.1\|3138539_3139010_+\|phosphate-starvation-inducible-protein-PsiE	gnl\|CDD\|225764	COG3223, COG3223, Predicted membrane protein [Function unknown].	1.82676e-28
NZ_CP009974.1\|WP_009685040.1\|3154668_3154869_+\|DUF1656-domain-containing-protein	gnl\|CDD\|377931	pfam07869, DUF1656, Protein of unknown function (DUF1656). This family contains bacterial proteins, many of which are hypothetical. Some proteins in this family are putative membrane proteins.	5.41995e-11
NZ_CP009974.1\|WP_014592331.1\|3139424_3139772_-\|HPF/RaiA-family-ribosome-associated-protein	gnl\|CDD\|376795	pfam02482, Ribosomal_S30AE, Sigma 54 modulation protein / S30EA ribosomal protein. This Pfam family contains the sigma-54 modulation protein family and the S30AE family of ribosomal proteins which includes the light- repressed protein (lrtA).	2.10159e-06
NZ_CP009974.1\|WP_026031873.1\|3139013_3139304_-\|DUF3509-domain-containing-protein	gnl\|CDD\|338217	pfam12021, DUF3509, Protein of unknown function (DUF3509). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 92 to 110 amino acids in length. This protein has two completely conserved residues (G and R) that may be functionally important.	2.67973e-32
NZ_CP009974.1\|WP_019438409.1\|3155811_3156264_-\|universal-stress-protein	gnl\|CDD\|238182	cd00293, USP_Like, Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.	2.22824e-16
NZ_CP009974.1\|WP_003251712.1\|3149835_3150783_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.59743e-67
NZ_CP009974.1\|WP_010955279.1\|3136460_3137480_+\|Glu/Leu/Phe/Val-dehydrogenase	gnl\|CDD\|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	9.34384e-88
NZ_CP009974.1\|WP_004575355.1\|3154879_3155740_+\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	3.9258e-88
NZ_CP009974.1\|WP_019437547.1\|3142811_3143792_+\|DUF4880-domain-containing-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	2.31685e-65
NZ_CP009974.1\|WP_023390296.1\|3142239_3142815_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274376	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.	2.54824e-32
NZ_CP009974.1\|WP_014592323.1\|3148684_3149659_-\|D-glycerate-dehydrogenase	gnl\|CDD\|240626	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH). D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	1.46318e-147
NZ_CP009974.1\|WP_014592333.1\|3137535_3137799_-\|YebG-family-protein	gnl\|CDD\|377779	pfam07130, YebG, YebG protein. This family consists of several bacterial YebG proteins of around 75 residues in length. The exact function of this protein is unknown but it is thought to be involved in the SOS response. The induction of the yebG gene occurs as cell enter into the stationary growth phase and is dependent on is dependent on cyclic AMP and H-NS.	5.59108e-26

>NZ_CP009974.1|WP_019437547.1|3142811_3143792_+|DUF4880-domain-containing-protein
MSRLPPITEAQFQAALRWLNRINEQPGQAEGAAFKRWLLADPAHRAAYEQAQVLWQKSAAPAARLADEEQDALQRYLDAMARPPARGGWRRVAGLALAACLVLAVGVAGGWHPGYWLQDLQADYRSAGQIRQVTLADQSQVTLDAGSAIAVDFAQGERRVRLLHGAAFFEVTHTGEPFLVEAAGGEVRVLGTQFEVREQSEGAQVTVRSGRVGVSPAQGTLARELTANQQVAYSAGRVGDTLAVDSDNRLAWRQGWLNYYQVPLAQVIDDLGRYYPGRILLLDGDLGQRKVSGSFPVAEPLLALDSLGKVMGFSRQTVLGRLTLIR
>NZ_CP009974.1|WP_023390296.1|3142239_3142815_+|sigma-70-family-RNA-polymerase-sigma-factor
MSEPGDIIEPHADSAGARARFVQVFQAQRARLEALVSRRVGCRATASDLVQELFLRFWRRPEVKVEALDTYLLRCAGNLAIDHLRSESSRERVAEAAVPVSEASLAQAPEQAVEVDHDLQRIEATLRALPERTRQIFLLNRIHGCKYSEIAKAMQLSQSAVEKHMMRALEACKASVAEPASTPRRPGSARR
>NZ_CP009974.1|WP_014592328.1|3141907_3142234_+|DUF3325-domain-containing-protein
MLGNALIAFAGFVALCLAMEKHFSDLLGRKPRPRHLHLLRVAGWLLLILSLVLSVHQRGWALGLVEWTAVMMAGVTLWVFGLPYQPRLLLGLAAASVVLGPMLAVFAV
>NZ_CP009974.1|WP_019437549.1|3140330_3141908_+|PepSY-domain-containing-protein
MKEGFRQAMAWLHTWTGLIFGWLLFAIFLTGTLSYFKEEITHWSQPEVRSHALDPINSLAVAQRYLQDNAGHSSTWFIRMPNEREAALSVGYRDPSGGPRGFVRKTLDTQTGQPVEARDSRGGEFFYRFHFQLQMPYPVGRWLSTFCAFIMLLGLVTGIITHKKIFKEFFTFRPGKGQRSWLDGHNAIGVLVLPFHLMISYSSLVLFMYMVMPAGIMASYGNDTGKYFNDLFGRNDAPKAAQVATPLVALPNLYAKVQELQPGARVGNIQVQNPGDSNARVTFTQSAADHVAYRRSANWTFDGASGALLGQGKPESGVMMTAFSFAGLHMGNFAGPWLRWLYFFFGVAGTAVIGTGLVMWLGKRQLKHAKNGHMPGELRLVEVLNIASMSGLLLAVAGFFWANRLVPLAVEGRADWEVSAFFIAWGLSLVHAVLRSGRKAWGEQLALGALAFALLPLLNGLTTGRGLNHSVPEGDWAMAGFDLTALGTGLFLAWLARKMLASPTPVAKRAARATKKPSVETVGAS
>NZ_CP009974.1|WP_019437550.1|3140028_3140334_+|DUF3649-domain-containing-protein
MTRKTAGLPLSYRLAVTSRSLAALLGGYLLASLASTCIALLAPLPKVDATLTGLLMSFVFYLLAFIWCFACRSAWRAWLGVLAPSLLLGVISGVAYWMKNP
>NZ_CP009974.1|WP_014592331.1|3139424_3139772_-|HPF/RaiA-family-ribosome-associated-protein
MQIQVNSSNDFDGNARLDQWVRSTLQNSLERYEEDLTRIEVHLRDENGVKPGPHDKRCQMEARPKGHQPISVTHTASSLDQAVDGAATKLNHALEHFYGKLRSKRGALELSDPDA
>NZ_CP009974.1|WP_026031873.1|3139013_3139304_-|DUF3509-domain-containing-protein
MNNPFERISAAFAPEYRVNLSIANLDGSIMLTLSDDAGVVAKRLITPAQRNDPVRLQRVIDSIRLGLAIELSQNPLQVLAALTRDARHEPRHFVAN
>NZ_CP009974.1|WP_003251685.1|3138539_3139010_+|phosphate-starvation-inducible-protein-PsiE
MNIKWAEKLRKGLHGSADSLGNLCVEAFHYLALFGIGAITAYAAVVTFLDMLGKGGISVDDILLLFIYLELGAMVGIYFKTNHMPIRFLLYVAITALTRLLIGDVSHHKAPDEGLLYLCGGILLLAFSILVVRYASYRYPSTKVLDANGKAVEEGK
>NZ_CP009974.1|WP_014592333.1|3137535_3137799_-|YebG-family-protein
MAVEVVYRSSRDPERLFMDKAEADRHDKMLELAERLAEVLHKAVPSLSEQQVEEAGIYMAKNRDVFARAFKNQPDALAELLEGTAAE
>NZ_CP009974.1|WP_010955279.1|3136460_3137480_+|Glu/Leu/Phe/Val-dehydrogenase
MFALMQSTRTQSLHLFNDPPTGLKAVVAIHSEHLGPAMGGCRYLPYADDESAMTDAIRLAQGMSYKAALAGLPMGGGKAVIMRNPHVENRAALFEAFGRFIDTLHGRFIIAVDSGTSTLDMDCIAHSTPYVTSTTASGDPSPHAAMGVFAGIRATTSFRLGSDDLRGLRVAVQGLGNVGYALAEQLHAVGAELLVSDLDPGRVRLAMEQFDAKPVTNDALISTPCDIFAPCGVGPVLNGQSVMQLRCAAVAGAANNQLTTLQVADQLESRGILYAPDYVINAGGLIYVALTHRGEDQRTITAHLARIPSRLTEVFGHAQAEKRSPARVAQMLAERLLYG
>NZ_CP009974.1|WP_019437546.1|3144089_3146480_+|TonB-dependent-receptor
MKFSPRCVPLWFGLAALPAFAVAPLASAAEQLQAYAFAQPAQPLAQALNAFSRTTGQSVVYTLELPGVQAPALNGRFSAEQALQQLLGNAGLAWRRVDARTLTLEPADTSGALSLQATTVTSQLDDYSYQPPASASIMRGQGPNQDIPQAINVVPAQVIRDQAPRNLDDALANVSGITQGNNFGGTSDTVMKRGFGDNRDGSIMRDGMPVVQGRNLNASTERVEVLKGPASLLYGIQDPGGVINVVSKRPQLQQYNALTVRGSTYGSGKNGSGGGLDSTGALGDSNFAYRLVVDHEDEDYWRNYGVHRESLVAPSLAWLGEDTQVVLAYEHREFLYPFDRGTAFGNNGHPLNIPATRRLDEPFNDMEGRSDLYRLEVDHQLADDWKLHFGYSFNRETYDASQVRVTGVNETQGTLTRSIDGTHNAMSRDQFVTLSLNGNVELAGMQHDLLFGIDHEDRKIFRGDLIRQAPQSTFSYLDPVYGQEVEGTNVRASDSDQTDKLRTDALFVQDALHLDEHWILVAGARFQQYDQYAGRGRPFKANTDISGQAWVPHAGIVYKVDDQLSFYGSYSESFKPNSTIAPLTGNVVLDSSVAPEEGKSWELGAKLDMPGRITGTLALFDITKRNVLVSNFDAVTRETVYSNAGEVSSRGVELDVTGQLSERWSLIGSYALTDAKVTKDPDLQGNRLQNVARHSGSLSAVYDFGSLFGGDRLRFGAGARYVGERSGNATNTFDLPSYTVADAFATYETKLDEHNVRLQLNVKNLFDKVYYSSAVNQYFVAIGDARQVSLSSTFEF
>NZ_CP009974.1|WP_019437545.1|3146509_3147385_-|helix-turn-helix-transcriptional-regulator
MTPLTQLQVFNAMHASPNARLELSAHLGDGLAAALWSNRDDARDYQAPSHHTLSCYIADGTGTFRRQRPADKGAPDKLCVMPAGQESNWVVNGAIRLAHLYVSEAQFALGCVRLLDREPRELQLQEATFLDDPQQAARFRQLIQLDWDEPGERLLASSLAHEIVDHALLSQVGLRQGLRLKGGLAPNLRRQLVDYLEAHLDQPITLDELALRCNLSAYHFARMFRASFGLPPHQYLLARRLHRACQLLRLGVLPLGEIALLCGFASASHFSNRFRQALGATPGEYRKAFFT
>NZ_CP009974.1|WP_019437544.1|3147570_3148473_+|EamA-family-transporter
MNLSLYLLTVLIWGTTWIALKLQLGVVAIPVSIVYRFALAGLILFAFLLITRRLQPMNRRGHQICLAQGLCLFCVNFICFLSASQWIASGLIAVVFSTATLWNALNARIFFGQKIASNVLGGGALGLLGLGLLFWPELSHHAASRETLYGLGLALLGTLCFSAGNMLSSMQQKAGLKPMTTNAWGMVYGAVMLAVFCVVSGVPFSMEWNARYIGSLLYLVVPGSVIAFTAYLTLVGRMGPERAAYCTVLFPLVALNVSAVAEGYQWTAPALLGLVAVMAGNVLVFRKPRARVAEGVVVAK
>NZ_CP009974.1|WP_014592323.1|3148684_3149659_-|D-glycerate-dehydrogenase
MKKTVLAFSRITPAMAERLQQDFNVILPNPKLGDISAQFNEALPEAHGLIGVGRKLGRAQLEGAARLEVVSSVSVGYDNYDLDYFNERGIALTNTPDVLTESTADLGFSLIMGCARRTAELDAWTKAGNWQATVGPAHFGSDVHGKTLGIVGMGNIGAAVARRGRFGFNMPILYSGNSRKTALEQELGAQFRSLDQLLAEADFVVIVVPLSDATRKLISSRELKLMKPSAFLINIARGPVVDEAALIEALQAGTIRGAGLDVYEKEPLSDSPLFKLPNALTLPHVGSATAETREAMANRAIDNLRAALLGERPRDLVNPQVWKG
>NZ_CP009974.1|WP_003251712.1|3149835_3150783_-|LysR-family-transcriptional-regulator
MDTLQNMRAFSCVAQLGSFTAAAAQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRYLMRCEQILTYVEEAEAEASDAHARPAGQLKVHSMTGVGQHFVVDAIARYRETHPDVTFDLTMANRVPDLLDEGYDVSIVLATELPDSGFVSQRLGITYSIVCASPAYIAQHGVAHKPADLLKHACLRMVSPVIPLEKWLFDGPEGQEMVNITSSPFMVNTADAMKTAIRSGMGVGVLPIYSAIEGLRDGSLVRVLPEYRLQELNLYAIYPSRQYLDAKIKTWVEYLRNSLPEILAAHEADLKTHQVLIAN
>NZ_CP009974.1|WP_019438407.1|3150975_3152505_+|efflux-transporter-outer-membrane-subunit
MPRRIIRTLKAFSACALALTLSGCIGTWGIAPQSKTLQANTLTTDAAIREAATDAHWPDQQWWHAYGDPQLDRWIALAVAGSPSLAMAAARVREAKAMAGVVESAEKLQANGQSTLKRHNWPEDQFYGPGALSGANTWDNNAAIGFSYALDLWGRERNASEQAVDQAHMSVAEARQAQLELQNNVVRAYIQLSLHFAQRDIVKAELEQQEQILALAKRRLDAGIGTHFEVSQAEAPLPETHRQLDSLNEEIALTRNQLAALAGKGPGEGAQLQRPTLALAAPLNLPSNLPAELVGQRPDVVASRWQVAAQARGIDIAHAGFFPNVDLVGSLGFMATGGGPLEFLTGRKFNYNVGPAISLPIFDGGRLRSQLGVASASYDVAVARYNQTVVGALKNISDQLIRRESMKEQSHFAAESVAAAQKTYDIAMVAFQRGLTDYLNVLNAQTLLFRQQQVQQQVQAARLVAHAELVTALGGGLQAGQDAPKEERQAAPKTPATLAIFDKKPDNAE
>NZ_CP009974.1|WP_019438408.1|3152501_3154679_+|FUSC-family-protein
MSTSSLPARWLQSLEWRRGFFAWARTDGVTWVYIFKVLAAAFITLWLAMRLELPQPRTAMITVFIVMQPQSGHVFAKSFYRVLGTLAGSAMMVALIAIFPQNTELFLPSLALWVGLCSAGAMRYRTFRAYGFVLAGYTAAMIGLPVLQHPDQAFMAAVWRALEIALGILVSTFVSAAILPQSASAAMRNALYQRFGVFAGVVVEALRGDSQKDRFESSNVRFVAEAVGLESLRNVTAFEDPHMRRRSGRLVRMNSEFMAITTRFNALHRLLERLRARGPLQIVSAIEPGLNTLVELLQPYVGRALTDADALRLTLELAAYKEGLQAQVRGLRAEYLATDPSESDLLDFHTAFELLYRFVDEMLSYAETHASLAAHKHEREQWDEPYVAQTSWLVSLAAGVRASAVLLLLGSYWLLSDWPSGAMMTLIATVTVCLSAASPNPKRMSFQMACGTAIGAFVGFFETFFVFPWIDGFPLLCMVLAPVFVLGAFLSSRPAYAGYGIGLLVFFAIGSVPNNLTVYDPYTFINDYIGMVIGMFVCAAAGAIILPPNSRWLWSRLEQALREQVLFAISGRLRGLGSAFESRTRDLLHQAYGLAAGKPQVQSQLMGWMFTVLEIGHAVIELRKEQARAPVHPAYAESQPWRQAIRVMGRALTRLFLQPSASNHERALVAVDHAIARVQATDEPFARHFDTSVLRRVQSYLHFIRTSLLDPQSPLAPAKGLHHAP
>NZ_CP009974.1|WP_009685040.1|3154668_3154869_+|DUF1656-domain-containing-protein
MPREIAFHGVYMPTMTLMFLFALGLAWGLDRFIASHDGYRFFWHPALLRLSLFVCLFGAMALTVYW
>NZ_CP009974.1|WP_004575355.1|3154879_3155740_+|HlyD-family-secretion-protein
MKKFFSLIATLLVLVAAVAIGRQLWLHYMTTPWTRDGRVRADIINVAADVPGYVVDVPVKDNQRVKKGDLLIQIDPEHYQLAVDQAKALVASRKATWEMRKVNAKRRADMDNLVISKENRDDASNIANSAQADYQQALAELAAAELNLKRTHIVATVDGYVTNLNIHKGDYARTGEAVMAVVDEHSFWVYGFFEETKLPHVKVGDQAELQMMSGERLKGHVESIARGIYDRDNPQSRELIADVNPTFNWVRLAQRVPVRIHIDEVPEGFLLAAGTTCTVVVKPSSP
>NZ_CP009974.1|WP_019438409.1|3155811_3156264_-|universal-stress-protein
MPSPVLIAIDASPASASLLALARRYCRPGEHELHVLLAIDSTFAVHEQPAPYTAEELEEYPAACEEQQHADHAVTEAVRELQQAGFASHGCMVAGLPVEAIVAKAQELRCELIIMGHRHLSRLGRLLDPSISAKVIDRVEVPVLVAAASA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

105 : 8190

Acidithiobacillus_phage(33.33%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019437637.1\|105_861_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.9e-73	54.8
WP_019437638.1\|878_2393_-\|transposase	IS21-like element ISPpu7 family transposase	K4I413	Acidithiobacillus_phage	1.5e-146	52.9
WP_026031923.1\|2806_3235_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A2H4J538	uncultured_Caudovirales_phage	3.1e-17	42.4
WP_019438254.1\|3304_3529_+	hypothetical protein	A0A2H4JDJ8	uncultured_Caudovirales_phage	1.2e-09	66.0
WP_019438253.1\|3833_4853_-\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	4.1e-23	26.4
WP_010954748.1\|5050_5761_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_003251077.1\|5817_6135_+	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA
WP_014590426.1\|6318_7386_+	phosphotransferase family protein	NA	NA	NA	NA
WP_003251082.1\|7422_8190_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	5.0e-18	31.3

DBSCAN-SWA_2

53181 : 65395

uncultured_Caudovirales_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019438229.1\|53181_54507_+	SDR family oxidoreductase	W8CYX9	Bacillus_phage	2.2e-05	36.1
WP_014590387.1\|55253_55718_+	hemerythrin domain-containing protein	NA	NA	NA	NA
WP_014590385.1\|56872_57544_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	9.6e-106	91.5
WP_019438226.1\|57707_59087_+	uracil-xanthine permease	H9YQ34	environmental_Halophage	1.3e-27	51.1
WP_019438225.1\|59182_59575_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.1e-53	79.8
WP_014590382.1\|59576_59936_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	3.9e-37	66.7
WP_014590381.1\|59935_60232_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	5.8e-23	58.6
WP_010954804.1\|60228_60564_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	7.5e-43	75.7
WP_019438224.1\|60560_61562_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	8.0e-157	80.5
WP_019438223.1\|61656_62616_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_019438222.1\|62722_64114_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_019438221.1\|64114_65395_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	3.5e-96	54.1

DBSCAN-SWA_3

988589 : 996368

Planktothrix_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010952150.1\|988589_989399_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	5.9e-25	32.5
WP_014589829.1\|989647_990622_+	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	1.9e-38	33.4
WP_014589828.1\|990634_991159_+	HAD family hydrolase	A0A140XBD6	Dickeya_phage	5.3e-27	48.1
WP_019438078.1\|991167_991740_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_003255131.1\|991726_992251_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_003255132.1\|992251_992977_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.4e-23	26.5
WP_026031904.1\|993152_994646_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_003255135.1\|994725_995034_+	ribosome hibernation promoting factor	A0A0M7QH33	Escherichia_phage	4.4e-05	34.1
WP_003255137.1\|995046_995511_+	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_010952145.1\|995513_996368_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	8.1e-09	32.8

DBSCAN-SWA_4

1742843 : 1782453

Bacillus_virus(50.0%)

integrase,transposase,holin

attL 1772972:1772995|attR 1788283:1788306

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014589378.1\|1742843_1743788_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003255710.1\|1743911_1744796_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_014589377.1\|1744962_1745928_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_014589376.1\|1745938_1746409_+	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
WP_019436920.1\|1746453_1748100_-	hypothetical protein	NA	NA	NA	NA
WP_014589374.1\|1748488_1748746_+	hypothetical protein	NA	NA	NA	NA
WP_011953240.1\|1748867_1749974_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_019439081.1\|1750467_1751844_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_014589371.1\|1752296_1753244_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003255725.1\|1753328_1754174_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_010951660.1\|1754170_1755349_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.0e-25	36.7
WP_014589370.1\|1755523_1756294_-	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_003255731.1\|1756304_1757042_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_003255734.1\|1757069_1757330_-	DUF2164 domain-containing protein	NA	NA	NA	NA
WP_014589369.1\|1757330_1757969_-	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_003255736.1\|1757969_1758563_-	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_019439080.1\|1758752_1760414_-	OFA family MFS transporter	NA	NA	NA	NA
WP_019439079.1\|1760682_1762935_+	AsmA family protein	NA	NA	NA	NA
WP_010951654.1\|1762931_1763999_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_019439078.1\|1763995_1764268_+	oxidative damage protection protein	NA	NA	NA	NA
WP_019439077.1\|1764622_1764850_-	hypothetical protein	NA	NA	NA	NA
WP_014589364.1\|1765089_1765533_+	hypothetical protein	NA	NA	NA	NA
WP_003255745.1\|1765771_1767157_-	GABA permease	NA	NA	NA	NA
WP_019439075.1\|1767788_1768562_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.4e-21	32.0
WP_019439074.1\|1768573_1769326_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003255749.1\|1769380_1770073_+	ABC transporter permease	NA	NA	NA	NA
WP_019439073.1\|1770072_1770762_+	ABC transporter permease	NA	NA	NA	NA
WP_019439072.1\|1770873_1772079_+	methyltransferase	NA	NA	NA	NA
WP_019439071.1\|1772359_1772635_-	DUF3077 domain-containing protein	NA	NA	NA	NA
1772972:1772995	attL	NA	NA	NA	NA
WP_014589359.1\|1773154_1773403_+	hypothetical protein	NA	NA	NA	NA
WP_019439070.1\|1773739_1775059_+	DUF4102 domain-containing protein	A0A0R6PGM3	Moraxella_phage	5.4e-44	33.0
WP_019437433.1\|1775986_1776967_+\|integrase	integrase	NA	NA	NA	NA
WP_019437435.1\|1777383_1778562_+	hypothetical protein	NA	NA	NA	NA
WP_019437436.1\|1778551_1780318_+	ATP-binding protein	NA	NA	NA	NA
WP_019437364.1\|1780896_1782453_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	1.4e-83	35.7
1788283:1788306	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2707914 : 2789528

Acidithiobacillus_phage(30.0%)

integrase,transposase,protease,tRNA

attL 2725216:2725236|attR 2792725:2792745

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019437573.1\|2707914_2708886_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_003249532.1\|2708980_2709241_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_012274456.1\|2709253_2710555_+	GTPase HflX	NA	NA	NA	NA
WP_014592593.1\|2710651_2711833_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_014592592.1\|2711832_2712702_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_010955481.1\|2713003_2714191_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA
WP_003249542.1\|2714247_2715540_+	adenylosuccinate synthase	A0A2R8FF47	Brazilian_cedratvirus	9.2e-73	37.1
WP_019437574.1\|2715878_2717813_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.3e-19	27.0
WP_019437575.1\|2717987_2718455_+	DUF2867 domain-containing protein	NA	NA	NA	NA
WP_003249548.1\|2718537_2720103_-	iron ABC transporter permease	NA	NA	NA	NA
WP_019437576.1\|2720102_2721116_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_003249552.1\|2721890_2724464_+	ribonuclease R	Q0GXV6	Lactococcus_phage	7.2e-69	34.2
WP_019437577.1\|2724460_2725207_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
2725216:2725236	attL	NA	NA	NA	NA
WP_003249557.1\|2725496_2725922_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_003249563.1\|2725950_2726181_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_003249565.1\|2726214_2727078_+	hypothetical protein	NA	NA	NA	NA
WP_003249568.1\|2727098_2727545_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_010955472.1\|2727658_2729056_+	replicative DNA helicase	A0A077SK18	Escherichia_phage	7.2e-148	59.3
WP_014592586.1\|2729728_2732029_+	YgiQ family radical SAM protein	M1QSD9	Pseudomonas_phage	1.8e-135	95.4
WP_019438728.1\|2732165_2732753_-	TIGR00730 family Rossman fold protein	A0A2I2L3F0	Orpheovirus	3.1e-07	26.6
WP_003249580.1\|2733101_2733551_+	azurin	NA	NA	NA	NA
WP_019438730.1\|2734271_2735927_+	NAD+ synthase	A0A2L0UZF5	Agrobacterium_phage	8.4e-95	38.1
WP_019438731.1\|2735983_2737120_-	hypothetical protein	NA	NA	NA	NA
WP_039612251.1\|2737787_2739146_+	benzoate 1,2-dioxygenase large subunit	NA	NA	NA	NA
WP_019438733.1\|2739142_2739628_+	benzoate 1,2-dioxygenase small subunit	NA	NA	NA	NA
WP_019438734.1\|2739683_2740694_+	ring-hydroxylating dioxygenase ferredoxin reductase family protein	A0A0E3F6W9	Synechococcus_phage	2.3e-10	40.7
WP_026031956.1\|2740809_2741571_+	1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase	NA	NA	NA	NA
WP_019438736.1\|2741714_2742641_+	catechol 1,2-dioxygenase	NA	NA	NA	NA
WP_019438737.1\|2742725_2743634_-	transporter	NA	NA	NA	NA
WP_019438738.1\|2743916_2744894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_019438739.1\|2745133_2746261_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_039612252.1\|2746325_2747192_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_019437638.1\|2747319_2748834_+\|transposase	IS21-like element ISPpu7 family transposase	K4I413	Acidithiobacillus_phage	1.5e-146	52.9
WP_019437637.1\|2748851_2749607_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.9e-73	54.8
WP_019438741.1\|2749961_2751302_+	aromatic acid/H+ symport family MFS transporter	NA	NA	NA	NA
WP_019438742.1\|2751469_2752717_+	OprD family porin	NA	NA	NA	NA
WP_050548036.1\|2752785_2753745_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_019438744.1\|2753779_2754859_-	mandelate racemase	Q6A202	Oenococcus_phage	1.3e-14	24.0
WP_019438745.1\|2754855_2756037_-	mandelate dehydrogenase	NA	NA	NA	NA
WP_019437637.1\|2756456_2757212_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.9e-73	54.8
WP_019437638.1\|2757229_2758744_-\|transposase	IS21-like element ISPpu7 family transposase	K4I413	Acidithiobacillus_phage	1.5e-146	52.9
WP_023389519.1\|2760386_2761088_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_019438750.1\|2762780_2764091_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_100219690.1\|2764681_2765380_+	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.4e-13	44.0
WP_019436633.1\|2765575_2766013_-	transcriptional regulator	A0A2H4J450	uncultured_Caudovirales_phage	6.2e-05	27.9
WP_019436634.1\|2766199_2766925_+	hypothetical protein	K4K650	Caulobacter_phage	1.3e-36	40.3
WP_019437637.1\|2767476_2768232_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.9e-73	54.8
WP_019437638.1\|2768249_2769764_-\|transposase	IS21-like element ISPpu7 family transposase	K4I413	Acidithiobacillus_phage	1.5e-146	52.9
WP_019436635.1\|2770199_2771474_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.6e-64	41.2
WP_019436636.1\|2771603_2774999_-	hypothetical protein	NA	NA	NA	NA
WP_019436637.1\|2775423_2775615_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_100219689.1\|2775845_2776922_-	taurine catabolism dioxygenase TauD	NA	NA	NA	NA
WP_023389525.1\|2777040_2778042_+	hypothetical protein	NA	NA	NA	NA
WP_026031804.1\|2778044_2781350_+	AAA family ATPase	A0A1V0SET7	Hokovirus	8.6e-06	38.4
WP_019436641.1\|2781399_2781981_-	hypothetical protein	NA	NA	NA	NA
WP_019436644.1\|2782715_2783552_+	hypothetical protein	NA	NA	NA	NA
WP_019436645.1\|2783992_2784319_+	hypothetical protein	NA	NA	NA	NA
WP_019436646.1\|2784433_2784955_-	hypothetical protein	NA	NA	NA	NA
WP_019436647.1\|2784951_2787084_-	hypothetical protein	NA	NA	NA	NA
WP_019436648.1\|2787083_2789528_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
2792725:2792745	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3482779 : 3492590

uncultured_Mediterranean_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010952690.1\|3482779_3483529_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	7.5e-67	52.6
WP_026031805.1\|3483525_3484203_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.8e-43	52.0
WP_019436655.1\|3484440_3485298_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV79	Clostridium_phage	1.9e-13	36.2
WP_019436654.1\|3485406_3486414_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.0e-34	35.8
WP_019437638.1\|3486975_3488490_+\|transposase	IS21-like element ISPpu7 family transposase	K4I413	Acidithiobacillus_phage	1.5e-146	52.9
WP_019437637.1\|3488507_3489263_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.9e-73	54.8
WP_003252355.1\|3489552_3489876_-	Ferredoxin 1	NA	NA	NA	NA
WP_010952693.1\|3490016_3492590_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	9.9e-26	23.3

DBSCAN-SWA_7

4205822 : 4268468

Bacillus_virus(10.0%)

coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003250242.1\|4205822_4207106_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.7e-138	58.3
WP_014591679.1\|4207269_4209666_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	6.7e-218	52.2
WP_003250246.1\|4209818_4210091_+	DNA-binding protein HU-beta	A3E2K9	Sodalis_phage	1.7e-21	62.9
WP_019438678.1\|4210272_4212144_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_026031953.1\|4212260_4213301_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_003250254.1\|4213478_4213757_+	lipoprotein	NA	NA	NA	NA
WP_019438676.1\|4213771_4214551_+	CHAD domain-containing protein	NA	NA	NA	NA
WP_014591675.1\|4214627_4215425_+	thioesterase family protein	NA	NA	NA	NA
WP_014591674.1\|4215466_4215835_-	DUF962 domain-containing protein	NA	NA	NA	NA
WP_019438675.1\|4215910_4217389_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	5.0e-30	32.0
WP_019438674.1\|4217487_4218312_-	preprotein translocase subunit TatD	NA	NA	NA	NA
WP_019438673.1\|4218469_4219876_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_010953281.1\|4219988_4220426_+	DoxX family protein	NA	NA	NA	NA
WP_014591670.1\|4220674_4220983_+	hypothetical protein	NA	NA	NA	NA
WP_010953283.1\|4220994_4221483_+	transcription elongation factor GreB	NA	NA	NA	NA
WP_019438672.1\|4221546_4224054_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_010953285.1\|4224050_4224737_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.1e-35	38.4
WP_014591667.1\|4224747_4225353_+	arylesterase	NA	NA	NA	NA
WP_014591666.1\|4225411_4225702_+	hypothetical protein	NA	NA	NA	NA
WP_019438671.1\|4225815_4226793_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_003250288.1\|4226926_4227178_-	hypothetical protein	NA	NA	NA	NA
WP_014591664.1\|4227686_4227968_+	N-acetyltransferase	NA	NA	NA	NA
WP_014591663.1\|4228037_4229114_-	3-deoxy-7-phosphoheptulonate synthase	A0A2I6UFP9	Klebsiella_phage	2.2e-83	50.8
WP_019438670.1\|4229346_4230294_+	putative 2-dehydropantoate 2-reductase	NA	NA	NA	NA
WP_003250295.1\|4230418_4230916_+	universal stress protein	NA	NA	NA	NA
WP_010953293.1\|4231044_4232019_+	HTH-type transcriptional regulator CysB	NA	NA	NA	NA
WP_003250299.1\|4232135_4232870_-	phosphoadenylyl-sulfate reductase	NA	NA	NA	NA
WP_014591661.1\|4232949_4234290_-	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	9.6e-49	33.0
WP_010953295.1\|4234498_4235479_-	alpha-L-glutamate ligase-like protein	NA	NA	NA	NA
WP_014591660.1\|4235478_4237014_-	inactive transglutaminase family protein	NA	NA	NA	NA
WP_010953297.1\|4237019_4237556_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_014591659.1\|4237862_4238579_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_014591658.1\|4238575_4239466_+	methylisocitrate lyase	NA	NA	NA	NA
WP_003250313.1\|4239526_4240654_+	2-methylcitrate synthase	NA	NA	NA	NA
WP_019437326.1\|4240816_4243405_+	Fe/S-dependent 2-methylisocitrate dehydratase AcnD	NA	NA	NA	NA
WP_014591656.1\|4243556_4244747_+	2-methylaconitate cis-trans isomerase PrpF	NA	NA	NA	NA
WP_019437437.1\|4244918_4246403_+	2-methylcitrate dehydratase	NA	NA	NA	NA
WP_019437438.1\|4246578_4249188_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
WP_019437439.1\|4249557_4250076_+	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_003250327.1\|4250086_4250443_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_019437440.1\|4250496_4251576_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_010953306.1\|4251795_4252104_+	peptidase	NA	NA	NA	NA
WP_003250344.1\|4252103_4252418_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_014591651.1\|4252418_4253087_+	response regulator transcription factor	NA	NA	NA	NA
WP_019437441.1\|4253083_4254403_+	sensor histidine kinase	NA	NA	NA	NA
WP_014591649.1\|4254722_4255877_+	HPP family protein	NA	NA	NA	NA
WP_010953310.1\|4255850_4256717_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_019437442.1\|4256897_4258787_+	propionyl-CoA synthetase	A0A2H4PQU7	Staphylococcus_phage	9.7e-55	29.7
WP_014591647.1\|4259017_4260088_-	cell division protein ZapE	NA	NA	NA	NA
WP_012271609.1\|4260220_4260463_-	hypothetical protein	NA	NA	NA	NA
WP_014591646.1\|4260922_4263310_-	response regulator	Q8QNA2	Ectocarpus_siliculosus_virus	6.4e-11	28.8
WP_003250360.1\|4263323_4263785_-	response regulator	NA	NA	NA	NA
WP_014591645.1\|4263800_4266047_-	GAF domain-containing protein	Q6XLU9	Feldmannia_irregularis_virus	3.8e-21	23.8
WP_019437443.1\|4266314_4266842_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_019437444.1\|4266872_4267409_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_014591643.1\|4267427_4267961_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_014591642.1\|4267964_4268468_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_8

5445843 : 5455855

uncultured_Caudovirales_phage(44.44%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019436670.1\|5445843_5446335_+	DUF1543 domain-containing protein	A0A2I2L4Z6	Orpheovirus	1.3e-22	34.3
WP_014591338.1\|5446412_5447183_+	SDR family NAD(P)-dependent oxidoreductase	Q56AQ6	Bacillus_thuringiensis_phage	2.8e-40	40.7
WP_003254014.1\|5447279_5447972_+	DUF421 domain-containing protein	NA	NA	NA	NA
WP_026031806.1\|5448064_5448604_+	type 1 glutamine amidotransferase	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	1.1e-19	36.6
WP_010953640.1\|5448660_5449185_-	hypothetical protein	NA	NA	NA	NA
WP_019436672.1\|5449379_5450237_+	glucose 1-dehydrogenase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	5.7e-71	50.9
WP_019436674.1\|5450467_5450767_+	hypothetical protein	NA	NA	NA	NA
WP_010953634.1\|5450952_5451300_+	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	8.6e-34	61.1
WP_014591345.1\|5451321_5452605_+	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	1.3e-175	75.4
WP_014591346.1\|5452633_5453104_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	1.3e-56	68.6
WP_010953631.1\|5453117_5453819_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.1e-104	79.4
WP_019436675.1\|5453831_5455196_-	two-component sensor histidine kinase	NA	NA	NA	NA
WP_014591349.1\|5455192_5455855_-	response regulator	W8CYM9	Bacillus_phage	2.1e-28	36.7

DBSCAN-SWA_9

5513858 : 5587855

Bacillus_phage(37.5%)

plate,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110159681.1\|5513858_5515213_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	5.0e-77	54.4
WP_019439089.1\|5515354_5515954_-	hypothetical protein	NA	NA	NA	NA
WP_019439088.1\|5515953_5516652_-	hypothetical protein	NA	NA	NA	NA
WP_014591396.1\|5516746_5517565_-	phosphate ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_014591397.1\|5517582_5518476_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_004574212.1\|5518472_5519441_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_003254123.1\|5519511_5520543_-	phosphate ABC transporter substrate-binding protein PstS	A0A1D7SRJ6	Cyanophage	5.0e-53	38.1
WP_014591399.1\|5520760_5520994_-	hypothetical protein	NA	NA	NA	NA
WP_019439087.1\|5521065_5521491_-	MAPEG family protein	NA	NA	NA	NA
WP_014591401.1\|5521487_5521802_-	hypothetical protein	NA	NA	NA	NA
WP_019439086.1\|5521908_5522727_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014591402.1\|5522716_5523502_-	hydratase	NA	NA	NA	NA
WP_014591403.1\|5523640_5524984_-	MFS transporter	NA	NA	NA	NA
WP_014591404.1\|5525028_5526171_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_019439085.1\|5526313_5527255_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_019439084.1\|5527545_5528421_+	universal stress protein	NA	NA	NA	NA
WP_019439083.1\|5528480_5529335_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_019439082.1\|5529486_5530041_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_014591408.1\|5530334_5531561_+	MFS transporter	NA	NA	NA	NA
WP_110159681.1\|5531691_5533045_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	5.0e-77	54.4
WP_014591409.1\|5533100_5533478_-	DUF2493 domain-containing protein	NA	NA	NA	NA
WP_014591410.1\|5533499_5536214_-	magnesium-translocating P-type ATPase	A0A1J0FA34	Only_Syngen_Nebraska_virus	1.1e-35	23.3
WP_004574224.1\|5536955_5538581_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	8.1e-50	36.1
WP_019436845.1\|5538721_5539612_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_019436846.1\|5539934_5541431_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_019436847.1\|5541431_5543198_+	NAD(P)H dependent flavin oxidoreductase family protein	NA	NA	NA	NA
WP_019436848.1\|5543311_5543770_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_023389546.1\|5543816_5544989_-	PAS domain-containing sensor histidine kinase	A0A1B0VMK3	Pseudomonas_phage	5.9e-26	36.9
WP_019436850.1\|5545273_5553934_+	cyclic beta 1-2 glucan synthetase	NA	NA	NA	NA
WP_014591418.1\|5554005_5554722_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_012052056.1\|5554803_5555316_-	transporter	NA	NA	NA	NA
WP_012052055.1\|5555328_5555913_-	ANTAR domain-containing protein	NA	NA	NA	NA
WP_033724638.1\|5555909_5557067_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_014591421.1\|5557088_5558210_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A2I7SAX5	Vibrio_phage	4.6e-28	29.9
WP_019436852.1\|5558265_5559309_-	aliphatic amidase	NA	NA	NA	NA
WP_014591422.1\|5559494_5560361_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_019436854.1\|5560698_5564217_-	cellulose biosynthesis protein BcsC	NA	NA	NA	NA
WP_019436855.1\|5564204_5565320_-	cellulase	NA	NA	NA	NA
WP_080590197.1\|5565319_5567608_-	cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB	NA	NA	NA	NA
WP_019436857.1\|5567604_5570214_-	UDP-forming cellulose synthase catalytic subunit	NA	NA	NA	NA
WP_019436858.1\|5570210_5570918_-	cellulose synthase operon protein YhjQ	NA	NA	NA	NA
WP_014591429.1\|5570914_5571133_-	hypothetical protein	NA	NA	NA	NA
WP_019436859.1\|5571129_5572743_-	cellulose biosynthesis protein BcsG	NA	NA	NA	NA
WP_010953551.1\|5572735_5572921_-	cellulose biosynthesis protein BcsF	NA	NA	NA	NA
WP_019436860.1\|5572917_5574408_-	peptidase	NA	NA	NA	NA
WP_019436861.1\|5574556_5574712_-	hypothetical protein	NA	NA	NA	NA
WP_019436862.1\|5574710_5576564_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	7.6e-36	27.0
WP_019436863.1\|5576641_5580262_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_014591434.1\|5580258_5581722_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_080557843.1\|5581709_5582270_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_014591436.1\|5582686_5583190_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_019436866.1\|5583207_5584698_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_010953542.1\|5584694_5585105_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_019436868.1\|5585108_5586875_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_019436869.1\|5586838_5587855_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009975

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009974

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection