CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_022808	Pseudomonas aeruginosa PA1, complete sequence	2 crisprs	csa3,DEDDh,cas3,DinG,WYL	1	0	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_022808_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_022808_1

339823-339936

Orphan

Consensus_repeat	Method
GGCCAAAGAACTGGAGGGCAAGGTATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_022808_1

>merge|NC_022808|1|339823-339936|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGAGCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGTGGCCAAAGAACTGGAGGGCAAGGTATGA

>NC_022808|1|1|339823-339936|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGA	GCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGT
GGCCAAAGAACTGGAGGGCAAGGTATGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_022808.2\|WP_003084320.1\|346765_347518_-\|hypothetical-protein	unknown	unknown	unknown
NC_022808.2\|WP_003112941.1\|343477_344530_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NC_022808.2\|WP_003118763.1\|345726_346746_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NC_022808.2\|WP_003084290.1\|332203_333562_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NC_022808.2\|WP_003112942.1\|344508_345012_-\|transcriptional-regulator	unknown	unknown	unknown
NC_022808.2\|WP_003107781.1\|328438_329500_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NC_022808.2\|WP_003111119.1\|326671_327550_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NC_022808.2\|WP_003084301.1\|336635_337733_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NC_022808.2\|WP_003084339.1\|349603_350296_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NC_022808.2\|WP_023518273.1\|331410_332163_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781
NC_022808.2\|WP_010793554.1\|345116_345728_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239267
NC_022808.2\|WP_079279911.1\|347566_348265_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|226274
NC_022808.2\|WP_003107783.1\|327712_328378_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_022808.2\|WP_003084297.1\|333627_334998_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NC_022808.2\|WP_003084327.1\|348286_348841_-\|hypothetical-protein	unknown	unknown	unknown
NC_022808.2\|WP_003084303.1\|337787_338942_+\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NC_022808.2\|WP_003084299.1\|335113_336217_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NC_022808.2\|WP_003112937.1\|329755_331132_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NC_022808.2\|WP_003112945.1\|349106_349601_+\|DUF523-domain-containing-protein	unknown	unknown	gnl\|CDD\|224597
NC_022808.2\|WP_023518274.1\|340979_343367_-\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|225241

Protein	Function_ID	Function_description	E-value
NC_022808.2\|WP_003112941.1\|343477_344530_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.54039e-32
NC_022808.2\|WP_003118763.1\|345726_346746_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	3.48481e-56
NC_022808.2\|WP_003084290.1\|332203_333562_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	5.71424e-158
NC_022808.2\|WP_003107781.1\|328438_329500_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.00795e-165
NC_022808.2\|WP_003111119.1\|326671_327550_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NC_022808.2\|WP_003084301.1\|336635_337733_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NC_022808.2\|WP_003084339.1\|349603_350296_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.29364e-79
NC_022808.2\|WP_023518273.1\|331410_332163_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	2.84131e-108
NC_022808.2\|WP_010793554.1\|345116_345728_-\|hypothetical-protein	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	0.00347374
NC_022808.2\|WP_079279911.1\|347566_348265_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	1.80342e-77
NC_022808.2\|WP_003107783.1\|327712_328378_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.86557e-09
NC_022808.2\|WP_003084297.1\|333627_334998_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NC_022808.2\|WP_003084303.1\|337787_338942_+\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NC_022808.2\|WP_003084299.1\|335113_336217_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NC_022808.2\|WP_003112937.1\|329755_331132_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.09186e-161
NC_022808.2\|WP_003112945.1\|349106_349601_+\|DUF523-domain-containing-protein	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	2.14015e-67
NC_022808.2\|WP_023518274.1\|340979_343367_-\|penicillin-acylase-family-protein	gnl\|CDD\|225241	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only].	0

>NC_022808.2|WP_003084303.1|337787_338942_+|polyamine-ABC-transporter-ATP-binding-protein
MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS
>NC_022808.2|WP_003084301.1|336635_337733_+|polyamine-ABC-transporter-substrate-binding-protein
MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVIAKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIKTGK
>NC_022808.2|WP_003084299.1|335113_336217_+|polyamine-ABC-transporter-substrate-binding-protein
MMKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK
>NC_022808.2|WP_003084297.1|333627_334998_+|aspartate-aminotransferase-family-protein
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQTAAAVLA
>NC_022808.2|WP_003084290.1|332203_333562_+|glutamine-synthetase
MTTKLDQLTSWLKERKITEVECLISDLTGIARGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVIHDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPVGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGDALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGKNIFSNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERRNLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLLSV
>NC_022808.2|WP_023518273.1|331410_332163_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGIPLIIPALGESIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASEPGTLHDSDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHVQPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWHPEWQVLTNPNYLAIFQAFGKACSKRAGQR
>NC_022808.2|WP_003112937.1|329755_331132_-|glutamine-synthetase
MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIERNSLNKVFEKGINLPASLFALDITGSTVESTGLGLDIGDADRICYPIPGTLSMEPWQKRPTAQLLMTMHELEGEPFFADPREVLRQVVARFTEMELTIVAAFELEFYLIDQENVNGRPQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQFEVNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKHGNNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGSQFYVPNAPSWGLDNRTVALRVPTGSPDAVRLEHRVAGADANPYLLLAAVLAGVHHGLTNKVEPGAPIEGNSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NC_022808.2|WP_003107781.1|328438_329500_-|polyamine-ABC-transporter-substrate-binding-protein
MPRLSALLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDTGIRVEYHTFATAEELDKALRSGEAIDVAVPSHDTLPALLKDNLLRPLDFTQLPNRSHLDRQLLSKLAAVDPDNRHAVPYLWGAVGLAINTPQAEAAYGGPLPNSWSLLFDASQSQRLKSCGISLLDAPDETLAILLNYQGRNLGRTAPSQVRRAAEALHGLRPNLRYVDSERYIADLEGGRLCLAMAWVGDALRAAKAGQPVSFEVPQEGSVLFIDNLVIPAGAQHPREAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLRPVVDEIWKAFRGASH
>NC_022808.2|WP_003107783.1|327712_328378_-|TetR/AcrR-family-transcriptional-regulator
MQPTSSTRKPRASSQARIAAILDAARGLLADEGIGGLTIYSVAERAEMPPSSVYHFFPSVPALLQGLTGEVHAAFRACLEQPVDHAGLRCWRDLSRIVEERMLAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALFERHFLLPPLPTDIEIFSLAMELGDRVYALSVQRHGIIDARLAEEGMRVFDAYLGLYLPPILEKRSEPLSGFISDLNR
>NC_022808.2|WP_003111119.1|326671_327550_-|N-carbamoylputrescine-amidase
MTRNVTVAATQMACSWDRPANIARAEKLVRQAAARGAQIILIQELFETPYFCQKPNPDYLQLATTVEENAAIAHFQALARELQVVLPISFFERAGRARFNSIAVIDADGGNLGVYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYARIGVGICWDQWFPESARSMALLGAELLFYPTAIGSEPHDASISSRDHWQRVQQGHAGANLMPLVASNRIGREEQDGYDITFYGSSFIADPFGEKVEELNRTEEGILVHTFDLDALERTRSAWGVFRDRRPNLYGPLKTLDGSLES
>NC_022808.2|WP_023518274.1|340979_343367_-|penicillin-acylase-family-protein
MKRTLTVIAVAVAAAAAGGAWYLHAKQPLRNGSLALAHLQAPVDVRYDERGVPHLYAQNQTDLYRALGYVHAQDRLFQMEMLRRLARGELAEVLGPKLVDTDRLFRTLRIRDHAAEYSARQDKQSQPWKVLEAYLDGVNQFQENNPAPLEFDLLGIPRRPFTPEDTLSIAGYMAYSFAAAFRTEPVLTYIRDELGSDYLRIFDLDWHPQGVLTPSGALGAGDWKDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRTASGKPLLAGDPHIRFAAPAVWYEAQLSAPGFELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLVAEKVNPDNPNQVWYQGEWVDLQSEEQEIAVKGAAPVKLTLRRSPHGPIVNDALGASSGKTPIAMWWAFLETENPVLDAFYQLNRADTLAKARAAASKIHSPGLNLVWANAAGDIGWWASAALPKRPEGVNPSFILDGSKGEADKSGFYPFADNPQEENPARGYIVSANFQPVPANGRPIPGYYNLADRGQWLDTQLADRGTKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREVVDDAEGKRLVEQLAAWKGDYPVDSTAATLFNQLLFQIAEGALHDELGDAFFDSLIATRAIDSALPRLAGDADSPWWDDRRTEHRETRADIVRTAWNASLAHLRSTLGNDPSGWLWGKAHTLTHEHALGQQALLKRLLNVGPFAAPGTHEVPNNLSAKIGPAPWAVTYGPSTRRLVDFADPTHSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLEPKR
>NC_022808.2|WP_003112941.1|343477_344530_+|AraC-family-transcriptional-regulator
MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPLPPPTLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLRQQIECLMLLFLKLLALISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNANPDMHDVLTRHAEEQSRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALAAGGASFRQVRDEVRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQYRARLAKREEGYSTSGT
>NC_022808.2|WP_003112942.1|344508_345012_-|transcriptional-regulator
MSLRPTLALLALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIYNTYRTESDKLSKETLKLLLDYAQAYNSGNVSDDQASKLIERVDDLQEDRLELRDKYVKRIAKNVSPKRAMRFLQIEIQLDAIATLEIGRQVPLVE
>NC_022808.2|WP_010793554.1|345116_345728_-|hypothetical-protein
MASLAPVFRVNAMTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRYIRPFSEQTTLFSGDSLRLPAELAGPGAIRLVHFWDPACPCNVGNQQHLGELIERFAGKGVEFHVLQKPGSQGRLPDNLAALRPLAGLPGSEQLPASPAVAIWDRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWTPGKG
>NC_022808.2|WP_003118763.1|345726_346746_+|alpha/beta-hydrolase
MCSRAAEYPWVSPVARPRIDCSPEPPMSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLRSRHPRLQARLGSMAVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQAAELDLAAPWHLCGQSTGGAILLDYLLHGGERPELGETILLAPLVRPRAWGWSKLSYRLLSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGESDETVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLSDALGA
>NC_022808.2|WP_003084320.1|346765_347518_-|hypothetical-protein
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAAQKRYQDKLPPALYQTLVDNSNRRFAPAEVDQRALNGLRENLPDSASPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLPAREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELTQYVNFAESPAGRSYYQAALAALKAGLAVDQAVAP
>NC_022808.2|WP_079279911.1|347566_348265_+|2OG-Fe(II)-oxygenase
MGRYCRHAADRLSRHRGGTLQWTMHINVNHPLLHRIVDELVDQGWSHQSIFMPERLTTRLAEECRTRAVAGDLTPAAIGRGDGQVIREGIRGDLTQWLEPGESEVCDEYLGVMDSLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLTGWFRRRNESLLQLS
>NC_022808.2|WP_003084327.1|348286_348841_-|hypothetical-protein
MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGQAGISLRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCVKAGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLYIGDNSIGRIELRDITDLRGTIKVWGH
>NC_022808.2|WP_003112945.1|349106_349601_+|DUF523-domain-containing-protein
MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEVAGGLPTPRPPAEIPGGQGGEVLDRLNRVFTVDGEDVSEAFLLGAEAAVELVRRHDIRMAVLKARSPSCGNLENYDGRFNGNRVAGEGVTAAALKRMGVLVFNEDELDRAAVCLAGLDAGG
>NC_022808.2|WP_003084339.1|349603_350296_-|amino-acid-ABC-transporter-permease
MNSLQKLLEWLANLVELLGMAWPFLLQGAMYTVLFAAVSMVLGLILGFSVAVVRVTKVPVVSQIAAVYVSAFRGTPLLVQIFVLYYGLPSVGIEFTPVTAGILALTLNVAAYLSESMRGAILGIDKGQWEAGLSVGLTWGQTLWNIITPQALRLAVPSLSNSLISLIKDTSLISVITVTELMLATKEVIAETFQPLPLYLAAAGIYWLLSALFERVQKALENRLTAPLRR

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Crispr_ID: NC_022808_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_022808_2

3542657-3542770

Orphan

Consensus_repeat	Method
TATCCGCCATGAAACGTCGGCGCAGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_022808_2

>merge|NC_022808|2|3542657-3542770|CRISPRCasFinder
TATCCGCCATGAAACGTCGGCGCAGCGGCGGATAACGCCGGTGGCGTTATTCGCCCTACGGCCCGACTCCGGGGCCGCGGGACGCATATCCGCCATGAAACGCCGGCGCAGCGG

>NC_022808|2|2|3542657-3542770|CRISPRCasFinder
TATCCGCCATGAAACGTCGGCGCAGCGG	CGGATAACGCCGGTGGCGTTATTCGCCCTACGGCCCGACTCCGGGGCCGCGGGACGCA
TATCCGCCATGAAACGCCGGCGCAGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_022808.2\|WP_023518585.1\|3540382_3542023_+\|carboxylic-ester-hydrolase	unknown	unknown	gnl\|CDD\|226651
NC_022808.2\|WP_003093621.1\|3546795_3548013_-\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|225741
NC_022808.2\|WP_003450170.1\|3548572_3549061_-\|SnoaL-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|367435
NC_022808.2\|WP_003118960.1\|3549542_3550256_-\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377050
NC_022808.2\|WP_003118954.1\|3544295_3546179_-\|phenazine-specific-anthranilate-synthase-component-I	unknown	unknown	gnl\|CDD\|223225
NC_022808.2\|WP_014603028.1\|3542064_3542601_+\|HIT-family-protein	unknown	unknown	gnl\|CDD\|223611
NC_022808.2\|WP_023518587.1\|3537836_3538988_+\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|225723
NC_022808.2\|WP_003114934.1\|3534222_3535173_+\|FecR-family-protein	unknown	unknown	gnl\|CDD\|226235
NC_022808.2\|WP_023102111.1\|3548048_3548537_-\|phenazine-biosynthesis-protein-phzB-2	unknown	unknown	gnl\|CDD\|367435
NC_022808.2\|WP_003088150.1\|3551790_3552960_+\|hypothetical-protein	unknown	unknown	unknown
NC_022808.2\|WP_003144451.1\|3535381_3537796_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_022808.2\|WP_003161731.1\|3531614_3532841_+\|DUF2599-domain-containing-protein	unknown	unknown	gnl\|CDD\|378494
NC_022808.2\|WP_003093628.1\|3543445_3544282_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|334973
NC_022808.2\|WP_033863078.1\|3542775_3543420_-\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|223337
NC_022808.2\|WP_003102692.1\|3551017_3551785_+\|sterol-desaturase-family-protein	unknown	unknown	gnl\|CDD\|225546
NC_022808.2\|WP_003093625.1\|3546175_3546799_-\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238495
NC_022808.2\|WP_023518586.1\|3539174_3540386_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340888
NC_022808.2\|WP_003088166.1\|3538984_3539173_+\|hypothetical-protein	unknown	unknown	unknown
NC_022808.2\|WP_003088185.1\|3533719_3534226_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|171561
NC_022808.2\|WP_009315577.1\|3532947_3533628_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_022808.2\|WP_023518585.1\|3540382_3542023_+\|carboxylic-ester-hydrolase	gnl\|CDD\|226651	COG4188, COG4188, Predicted dienelactone hydrolase [General function prediction only].	8.80536e-69
NC_022808.2\|WP_003093621.1\|3546795_3548013_-\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|225741	COG3200, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism].	0
NC_022808.2\|WP_003450170.1\|3548572_3549061_-\|SnoaL-like-domain-containing-protein	gnl\|CDD\|367435	pfam03284, PHZA_PHZB, Phenazine biosynthesis protein A/B.	4.33555e-101
NC_022808.2\|WP_003118960.1\|3549542_3550256_-\|LuxR-family-transcriptional-regulator	gnl\|CDD\|377050	pfam03472, Autoind_bind, Autoinducer binding domain. This domain is found a a large family of transcriptional regulators. This domain specifically binds to autoinducer molecules.	3.47942e-42
NC_022808.2\|WP_003118954.1\|3544295_3546179_-\|phenazine-specific-anthranilate-synthase-component-I	gnl\|CDD\|223225	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism].	2.4585e-82
NC_022808.2\|WP_014603028.1\|3542064_3542601_+\|HIT-family-protein	gnl\|CDD\|223611	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only].	4.27729e-14
NC_022808.2\|WP_023518587.1\|3537836_3538988_+\|PepSY-domain-containing-protein	gnl\|CDD\|225723	COG3182, PiuB, Uncharacterized iron-regulated membrane protein [Function unknown].	1.60511e-94
NC_022808.2\|WP_023102111.1\|3548048_3548537_-\|phenazine-biosynthesis-protein-phzB-2	gnl\|CDD\|367435	pfam03284, PHZA_PHZB, Phenazine biosynthesis protein A/B.	1.36106e-106
NC_022808.2\|WP_003144451.1\|3535381_3537796_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	2.23572e-117
NC_022808.2\|WP_003161731.1\|3531614_3532841_+\|DUF2599-domain-containing-protein	gnl\|CDD\|378494	pfam10783, DUF2599, Protein of unknown function (DUF2599). This family is conserved in Actinobacteria. The function is not known.	7.56709e-27
NC_022808.2\|WP_003093628.1\|3543445_3544282_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|334973	pfam02567, PhzC-PhzF, Phenazine biosynthesis-like protein. PhzC/PhzF is involved in dimerization of two 2,3-dihydro-3-oxo-anthranilic acid molecules to create PCA by P. fluorescens. This family also contains uncharacterized Mycobacterial proteins, though there is no significant sequence similarity to pfam00303 members. This family appears to be distantly related to pfam01678, including containing a weak internal duplication. However members of this family do not contain the conserved cysteines that are hypothesized to be active site residues (Bateman A pers obs).	4.89388e-112
NC_022808.2\|WP_003114934.1\|3534222_3535173_+\|FecR-family-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	1.04983e-93
NC_022808.2\|WP_003102692.1\|3551017_3551785_+\|sterol-desaturase-family-protein	gnl\|CDD\|225546	COG3000, ERG3, Sterol desaturase [Lipid metabolism].	1.13085e-45
NC_022808.2\|WP_003093625.1\|3546175_3546799_-\|isochorismatase-family-protein	gnl\|CDD\|238495	cd01013, isochorismatase, Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.	8.51915e-130
NC_022808.2\|WP_023518586.1\|3539174_3540386_+\|MFS-transporter	gnl\|CDD\|340888	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of the eukaryotic proteins MFSD9, MFSD10, MFSD14, and SLC46 family proteins, as well as bacterial multidrug resistance (MDR) transporters such as tetracycline resistance protein TetA and multidrug resistance protein MdtG. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. TetA proteins confer resistance to tetracycline while MdtG confers resistance to fosfomycin and deoxycholate. The Solute carrier 46 (SLC46) family is composed of three vertebrate members (SLC46A1, SLC46A2, and SLC46A3), the best-studied of which is SLC46A1, which functions both as an intestinal proton-coupled high-affinity folate transporter involved in the absorption of folates and as an intestinal heme transporter which mediates heme uptake. MFSD10 facilitates the uptake of organic anions such as some non-steroidal anti-inflammatory drugs (NSAIDs) and confers resistance to such NSAIDs. The SLC46/TetA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.74268e-60
NC_022808.2\|WP_003088185.1\|3533719_3534226_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|171561	PRK12528, PRK12528, RNA polymerase sigma factor; Provisional.	1.95845e-60
NC_022808.2\|WP_033863078.1\|3542775_3543420_-\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|223337	COG0259, PdxH, Pyridoxamine-phosphate oxidase [Coenzyme metabolism].	1.19703e-97

>NC_022808.2|WP_014603028.1|3542064_3542601_+|HIT-family-protein
MHIPPELIIHQTRHWTLNQRIDSALPGYCMLGSRQLATAFHQLPEQALAEFGPLLARVEREMDTLLRPRRIYVGRYGHMPGLPVHFHLIPLYDWVEELFWEDTRYRTLQQFGVPTADPLTDGAELTLFVWREFCERADPPAVRGMDRQQAIGGLRRAFGYGVQPRTSSGPDSESAQDA
>NC_022808.2|WP_023518585.1|3540382_3542023_+|carboxylic-ester-hydrolase
MTAVDLLLVATLLAALLAWWIPALPGRRSLLALASTLALGAGLYAAWDDRWQAGVGAFAGFSLLLGACLRRKPERGLPFRTGSLYGLLVLLAIAALYLFPVAPLPAPSGPYAVGVRDFELDDPSRPGLLGAPAGQPRRLLVRAWYPARPIAGAAPRHYFDPGEARSTARGFGEILGFPPLLAYLKHLRTNSYPDAPLRDDSARLPVVFYSHGYSAFAGGNWTLMEELASHGYAVYAIQHSGDASPTRLPDGTLLPMDPGLVEHLRRAAHDGLPQAMRQGYVSDDLDQRLDGQLHTALDLPAPANRAVNLSAPVWLADRLFVHDRLQAGEVPDRVADLVAASDFAHTGEMGMSFGGSTTGAVCMVDRRCAAAVNLDGGDFDFAPFDSDLPAPLLMLHADLGNFYRLFGIEPPARPRSFNDFSYERFEHAGQRQDIHRLVLRDSAHAGLTDNPLFIRRPLRDGLLGSAPTEVLIQAPNALVLGFFDHYLRGRANDFPQAQMARFPAWLTRYDNSAVRDWWLAKPEAQRLALRQRIDEMKRRKTGLDLP
>NC_022808.2|WP_023518586.1|3539174_3540386_+|MFS-transporter
MTTPPPSTNTLDLRPLMFETFVCTLAVMSFVALVGPLARKLGLAAWQAGAAVTVGGIAWMLAARPWGIASDRHGRRRILLGGLAGFALSYASLCLFIVLALHWTLPTLLAFAGIVLLRGLAGGFYAAVPACTAALVADHVEAQRRAAALAGLGAASAIGMVIGPGLAGLLATHGLVLPLLVTGALPLVALLALWRWLPREERRQPNRGAALAIGDRRLRRPLAVGFVAMFSVTVAQITVGFFALDRLRLDSADAARVAGIALTAVGVALILAQLLVRRLDWPPPRLIRVGGLVAAIGFAAVCFADSPPLLWLAFFVAAAGMGWVFPAVSALNANSVRAEEQGAAAGTLVAVHGFGLISGPLLGTLLHQFDSRAPYALVGLLLALAAFWPSQPTRPVETRSEAP
>NC_022808.2|WP_003088166.1|3538984_3539173_+|hypothetical-protein
MRRGLWMIFRWPLLLALLGLFGLLSALLGDGLYDLLSWLALGTPLVLVGWVWLRLPRTRRNP
>NC_022808.2|WP_023518587.1|3537836_3538988_+|PepSY-domain-containing-protein
MTAKTLRTWYLVHKWTSLISTIFLLMLCLTGLPLIFHEEIEHYFEPHPQLEPLTAESPRIDYDDVIARALAARPGEVVRFLVFEKDDPLGLVISAPSLVPPPENGHMQPFDARTGEFFDALPPPGGFMYLMLKLHTDLFLGLPGYLFLGLMGLLLVASLVSGVVVYTPFMRKLNFATVRAERSRRLKWLDLHNLLGIVTLSWVLVVGVTGVINTLALPILMLWQGGQLAEMTAPYKDTPPLQRLGSLDAALATARRAAPDMEVSFVGFPGTQFSSQHHYAVFMRGNTPLTERLLKPALIDAQSGELTDMREMPLYVKTLLLSQPLHFGDYGGMPLKIVWALLDLVSIVILASGLYLWLGRRKTPLEKRLAELPDGSLATEGKA
>NC_022808.2|WP_003144451.1|3535381_3537796_+|TonB-dependent-receptor
MPVRTLRPRSLSLAIHAAAMTLALAGAAPALLAAEAPAASSARSYDIAPGPLGRTLSAFASDNGVSLAFDPALTEGRRSAALRGRYAPVEALHRLLLGSGLELQQRSDGSYTLVPAATDGALELQSSLITAQAAGAETLPAEYAGGQVARGARLGMLGNADVMDAPFSITSYTARTIEQQQARSVADLLQANDPSVRVVGGRGDLVDSYTIRGFSVQNADVAFNGLYGLLPFWRVPIEFAERVEVLKGPNALLGGISPGGSVGGTINLVPKRADDQPLTRVSVDWTQRGQLGTHLDIGRRFGENNAFGVRFNGVYRNGDTAVDHQSREFPMLSLGLDFRGERLRLSSDLLYQKESLEGVVRPLLTGPGTTHIPHAPDSKTRFGLRDSYLDQEDYSMVNRGEYDLADNLTAFASIGGRQSNYETIAANSILVGNQGDIVNSLARQRGDRRTYSAEVGLRGNFDTGPLRHDWTLSANRLHERLGMVYAFTGMQPGNLYQTSPHTPLPDFSSLDGSIPKTNETDLGGVALADRLSFLEDRVQVTLGVRRQQIESRNYDQTSGARTSHDKRHVWTPMASVLVKPLQDLSLYANYIQGLSQGEAAPMTAANAGQVLAPYKAEQYEIGAKYDLGGFTTTLALFEIRKPNAYTDASNVFRADGEQRNRGVELSLYGEPLDGVRVMAGATYIKPEQNKTGDPASEGKDAPGVARRQANLGVSWDTPFVDGLTLDSRWIYTGSAYVDSANALAVPHWNRVDLGAAYAFQVAGKPLVARANLENALGKDYWTAANGYLSISSPRTLSLSLTADF
>NC_022808.2|WP_003114934.1|3534222_3535173_+|FecR-family-protein
MNAADEGRIPSPILDEAAEWLVRLQDSGCTDDTRQACAQWRQRSPQHAHAWERAERLLQCLGRLPPALALPTLGRERGLDRRRAIKHLALVLGGASLGLATWQAEPLRDWLADQRTGVGEQRRLTLPDGSLLTLNTDSAVDLAFDASQRLVRLLRGEIFVDSRADPRPFRVATAEARLHAGAARFNVRQEMAATRVAVLAGRVELSPLHGRGRWLESGESVRLGADGEARRLAFDGLPDAWTRGMLMADRMPLAEVLAELARYRRGVLRCDPQLARLAVSGAYPLLDLRRTLGMLQATYPLKVRGVTDYWISLVPA
>NC_022808.2|WP_003088185.1|3533719_3534226_+|sigma-70-family-RNA-polymerase-sigma-factor
MPPADASLHDAVSHLYQDHHGWLQGWLRRRLGCAENAADLAQDTFARLLASRRVLDAREPRAYLTTVAKGLMINWFQRQSLERAYLDALANLPEDLAPPPEQRLMVLETLHEVDALLGSLPDRVRQAFLLAQIEGLKYEAIAERLGVSLGSVKRYMQQAFRQCLELME
>NC_022808.2|WP_009315577.1|3532947_3533628_+|hypothetical-protein
MAFDAARYVHRYYASLAPAPGNEYPRLRAWEYLWEYVWDPSRSWDDLTAPEQLDTTALHLGFYLANWGMFRGSSGLLQNSNLDLMKALARQLFSGAGAELFELSLVDFAGNGARLAHNRKLLETVLGSMDALSSRVSWTDTLKSKILLGVWGEFPALDRHYVAACRALYPRRGLTSVNGGTLTALHRLIGEERLSFPRLETARKGLLYPTGRLADMAFFQYGLENA
>NC_022808.2|WP_003161731.1|3531614_3532841_+|DUF2599-domain-containing-protein
MNGSRSIFLYLLAAAGLALTPAAQADRGNDVVARLNQLYNDTRQDCGGPSKPAFLCSGVLFRATWPSTDYMFYSISPKSQKSGGVSASYLRKDAKYRKLAYGLKSGFIFDTIFGNPKDHQDYAVLCSFPIDAATDDRAQQGCTDSRRTPNSVEKSCQDINVSTAEQWAANYRQNRGDHSRQCSFDVRDERNTAAGPAFYQSIRAMAQIADESFTTQNELRLAKWEENPPKSPSILAAFYTEDAGLEGARLNQIQWYQSVQAFLPIINMRLPQTRQQDAQFAYDGRKQAIYPTSEKNACERYVESATWVERDDPGFRKKIMTLEVVPTDCGRKIQDNQTNNFFNELVVDHYLDSEWKDNPDNRDSNIGSMRRQLVCHFNVARNKPEWNLEPSRPYTSNEDSIAKGCNNT
>NC_022808.2|WP_033863078.1|3542775_3543420_-|pyridoxamine-5'-phosphate-oxidase
MGVNANISESLTGTIEAPFPEFEAPPANPMEVLRNWLERARRYGVREPRALALATVDGQGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSIASRQSETLVDIHALRAEARRLAETDGPLPRPPGYCLFELCLESVEFWGNGTERLHERLRYDRDEGGWKHRYLQP
>NC_022808.2|WP_003093628.1|3543445_3544282_-|PhzF-family-phenazine-biosynthesis-protein
MHRYVVIDAFASEPLQGNPVAVFFDCDDLSGERMQRMAREMNLSESTFVLRPQQDGDARIRIFTPVNELPFAGHPLLGTAIALGAETDKDRLFLETRMGTVPFALERQDGKVVACSMQQPIPTWEHFSRPAELLAALGLKGSTFPIEVYRNGPRHVFVGLESVAALSALHPDHRALCDFPDLAVNCFAGAGRHWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHRQIPYGQQIEILQGVEIGRPSRMYARAEGAGERVSAVEVSGNGAAFAEGRAYL
>NC_022808.2|WP_003118954.1|3544295_3546179_-|phenazine-specific-anthranilate-synthase-component-I
MNALPTSLLQRLLERPAPFALLYRPESNGPGLLDVIRGEALELHGLADLPLDEPGPGLPRHDLLALIPYRQIAERGFEALDDGTPLLALKVLEQELLPLEQALALLPNQALELSEEGFDLDDEAYAEVVGRVIADEIGRGEGANFVIKRRFQARIDGYATASALSFFRQLLLREKGAYWTFIVHTGERTLVGASPERHISVRDGLAVMNPISGTYRYPPAGPNLAEVMEFLDNRKEADELYMVVDEELKMMARICEDGGRVLGPYLKEMAHLAHTEYFIEGQTSRDVREVLRETLFAPTVTGSPLESACRVIRRYEPQGRGYYSGVAALIGGDGQGGRTLDSAILIRTAEIEGDGRLRIGVGSTIVRHSDPLGEAAESRAKASGLIAALKSQAPQRLGSHPHVVAALASRNAPIADFWLRGASERQQLQADLSGREVLIVDAEDTFTSMIAKQLKSLGLTVTVRGFQEPYSFDGYDLVIMGPGPGNPTEIGQPKIGHLHLAIRSLLSERRPFLAVCLSHQVLSLCLGLDLQRRQEPNQGVQKQIDLFGAAERVGFYNTFAARALQDRIEIPEVGPIEISRDRETGEVHALRGPRFASMQFHPESVLTREGPRIIADLLRHALVERRP
>NC_022808.2|WP_003093625.1|3546175_3546799_-|isochorismatase-family-protein
MSGIPEITAYPLPTAQQLPANLARWSLEPRRAVLLVHDMQRYFLRPLPESLRAGLVANAARLRRWCVEQGVQIAYTAQPGSMTEEQRGLLKDFWGPGMRASPADREVVEELAPGPDDWLLTKWRYSAFFHSDLLQRMRAAGRDQLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIADFSEAHHRMALEYAASRCAMVVTTDEVLE
>NC_022808.2|WP_003093621.1|3546795_3548013_-|3-deoxy-7-phosphoheptulonate-synthase
MDDLLQRVRRCEALQQPEWGDPSRLRDVQAYLRGSPALIRAGDILALRATLARVARGEALVVQCGDCAEDMDDHHAENVARKAAVLELLAGALRLAGRRPVIRVGRIAGQYAKPRSKPHEQVGEQTLPVYRGDMVNGREAHAEQRRADPQRILKGYAAARNIMRHLGWDAASGQEANASPVWTSHEMLLLDYELSMLREDEQRRVYLGSTHWPWIGERTRQVDGAHVALLAEVLNPVACKVGPEIGRDQLLALCERLDPRREPGRLTLIARMGAQKVGERLPPLVEAVRAAGHPVIWLSDPMHGNTIVAPCGNKTRLVRSIAEEVAAFRLAVSGSGGVAAGLHLETTPDDVTECVADSSGLHQVSRHYTSLCDPRLNPWQALSAVMAWSGAEAIPSATFPLETVA
>NC_022808.2|WP_023102111.1|3548048_3548537_-|phenazine-biosynthesis-protein-phzB-2
MLDNAIPQGFEDAVELRRKNRETVVKYMNTKGQDRLRRHELFVEDGCGGLWTTDTGSPIVIRGKDKLAEHAVWSLKCFPDWEWYNIKVFETDDPNHFWVECDGHGKILFPGYPEGYYENHFLHSFELDDGKIKRNREFMNVFQQLRALSIPVPEIKREGIPT
>NC_022808.2|WP_003450170.1|3548572_3549061_-|SnoaL-like-domain-containing-protein
MREYQRLKGFTDNLELRRRNRATVEHYMRMKGAERLQRHSLFVEDGCAGNWTTESGEPLVFRGHESLRRLAEWLERCFPDWEWHNVRIFETEDPNHFWVECDGRGKALVPGYPEGYCENHYIHSFELENGRIKRNREFMNPMQKLRALGIAVPQIKRDGIPT
>NC_022808.2|WP_003118960.1|3549542_3550256_-|LuxR-family-transcriptional-regulator
MHDEREGYLEILSRITTEEEFFSLVLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYTSIDPIVRHGLLEYTPLIWNGEDFQENRFFWEEALHHGIRHGWSIPVRGKYGLISMLSLVRSSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLLN
>NC_022808.2|WP_003102692.1|3551017_3551785_+|sterol-desaturase-family-protein
MIYYLIGVALFIFMLEQLVPGWKLPKVSTWVARVIFLNIVQVSIALLAGITWNKWMMGHSLLHTSDALPPLLAGFAAYFVNTFVTYWWHRARHANDTLWRLFHQLHHAPQRIEVFTSFYKHPTEMVFNSLLGSFVAYVVMGISIEAGAYYIMFAALGEMFYHSNLRTPHVLGYLFQRPEMHRIHHQRDRHECNYSDFPIWDMLFGTYENPRRIDEPQGFAGDKEQQFVDMLLFRDVHSLPGKTQPAPVLVKPDVR
>NC_022808.2|WP_003088150.1|3551790_3552960_+|hypothetical-protein
MIPDIDSRLSRNILKSISYGLPLAEVVPDHTYAQLETRLGELKRRYLELRISHGARELPFSNYLFYLILQSRHQEFDFKLRQGNSVVTNIHRFKSKGRIPSLTTLLLADAVNAKSELELKHPDIPQLDRHARDIERWLAAGNVMPPSERALRGLVEALERAAGEGRPLHLVSAVCPDYSHSSDAEGKPRYTFERVGDQPGLAGAKLVSAGQAVAELARARQVEIRHAILGGEFEYLSFNRNPATGETREGFLGKVERQLERIAGALPCPAATCSFFEMCGGEDGWHRAHGEIVQRLEQGDYGQTGLDYPALESIFLSRLPLYEKWFASQSREQIWASFVSQAAEYALMGKLFGERFDNFVVLAVDHYRMEPFYSFFATVPTLYIRTDYL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_022808_2	2.1\|3542685\|58\|NC_022808\|CRISPRCasFinder	3542685-3542742	58	NC_022808.2	792455-792512	0	1.0

1. spacer 2.1|3542685|58|NC_022808|CRISPRCasFinder matches to position: 792455-792512, mismatch: 0, identity: 1.0

cggataacgccggtggcgttattcgccctacggcccgactccggggccgcgggacgca	CRISPR spacer
cggataacgccggtggcgttattcgccctacggcccgactccggggccgcgggacgca	Protospacer
**********************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

60524 : 117686

Shigella_phage(20.0%)

transposase,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086937300.1\|60524_61686_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	4.3e-85	53.6
WP_016252823.1\|61784_62477_+\|transposase	transposase	NA	NA	NA	NA
WP_124174000.1\|62730_63507_+	hypothetical protein	NA	NA	NA	NA
WP_073650824.1\|63503_63977_+	hypothetical protein	NA	NA	NA	NA
WP_153562302.1\|64494_64764_+	hypothetical protein	NA	NA	NA	NA
WP_071535236.1\|65654_65975_+	hypothetical protein	NA	NA	NA	NA
WP_003083536.1\|66739_67135_+	hypothetical protein	NA	NA	NA	NA
WP_003122278.1\|67405_68815_-	MgtC/SapB family protein	NA	NA	NA	NA
WP_023518240.1\|68978_70352_+	T3SS effector bifunctional cytotoxin exoenzyme T	NA	NA	NA	NA
WP_003111706.1\|70847_71534_+	CsgG/HfaB family protein	NA	NA	NA	NA
WP_003083569.1\|71564_71918_+	DUF4810 domain-containing protein	NA	NA	NA	NA
WP_157832017.1\|71959_72580_+	DUF799 family lipoprotein	NA	NA	NA	NA
WP_003104304.1\|72594_72978_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014603458.1\|73259_74921_-	hypothetical protein	NA	NA	NA	NA
WP_003083582.1\|75532_75673_+	hypothetical protein	NA	NA	NA	NA
WP_003111526.1\|76494_78327_+	asparagine synthase (glutamine-hydrolyzing)	A0A2K9R7N5	Dishui_lake_phycodnavirus	2.7e-17	28.3
WP_003083588.1\|78379_78808_-	cupin domain-containing protein	NA	NA	NA	NA
WP_003111523.1\|79015_79564_-	RNA 2'-phosphotransferase	A0A2R2ZGT8	Clostridioides_phage	6.1e-34	41.6
WP_003083593.1\|79602_80109_-	DUF1993 family protein	NA	NA	NA	NA
WP_003128174.1\|80174_81095_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003083599.1\|81202_82090_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_023097117.1\|82152_82857_+	DsbA family protein	NA	NA	NA	NA
WP_003118563.1\|82940_83396_+	OsmC family protein	NA	NA	NA	NA
WP_003114662.1\|83506_83740_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_003083612.1\|83751_84189_-	hypothetical protein	NA	NA	NA	NA
WP_003083614.1\|84245_84662_-	hypothetical protein	NA	NA	NA	NA
WP_003118564.1\|84753_85881_+	hypothetical protein	NA	NA	NA	NA
WP_003114660.1\|85888_86872_-	hypothetical protein	NA	NA	NA	NA
WP_003118497.1\|86904_87570_-	HAD family hydrolase	NA	NA	NA	NA
WP_003083618.1\|87562_88105_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_003114658.1\|88182_90228_+	oligopeptidase A	NA	NA	NA	NA
WP_003083624.1\|90224_90500_+	YheV family putative metal-binding protein	NA	NA	NA	NA
WP_003083628.1\|90588_91647_+	PA0069 family radical SAM protein	NA	NA	NA	NA
WP_003106614.1\|91876_92791_-	hypothetical protein	NA	NA	NA	NA
WP_003106615.1\|92852_94565_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	NA	NA	NA	NA
WP_023518241.1\|94557_95757_-	ABC transporter permease	NA	NA	NA	NA
WP_023100708.1\|95756_96476_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.3e-19	36.8
WP_023518242.1\|96472_99571_-	protein kinase	M1PCM5	Moumouvirus	2.5e-23	27.8
WP_023518243.1\|99578_100307_-	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_003083642.1\|100316_100997_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_023518244.1\|100993_104527_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_003115051.1\|104523_105873_-	DotU family type VI secretion system protein	NA	NA	NA	NA
WP_003115052.1\|105879_107214_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_003083660.1\|107229_107694_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_003115053.1\|107738_109214_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_003104975.1\|109581_110616_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_003083666.1\|110704_111223_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_003104973.1\|111235_112732_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_003083670.1\|112807_113296_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_003119488.1\|113463_114309_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_003104971.1\|114310_114820_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_003083676.1\|114816_116676_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_003104969.1\|116639_117686_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_2

637842 : 718394

Pseudomonas_phage(35.9%)

tRNA,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003129196.1\|637842_638868_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	8.3e-109	58.1
WP_003085061.1\|638946_639516_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003099587.1\|639599_639953_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_003137363.1\|639943_640486_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_003117955.1\|640458_641691_-	multifunctional CCA addition/repair protein	A0A076G5T8	Escherichia_phage	2.0e-77	43.3
WP_003085071.1\|641734_642241_-	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_003099581.1\|642335_643889_-	SpoVR family protein	NA	NA	NA	NA
WP_003099579.1\|643885_645157_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	4.2e-09	37.2
WP_003085078.1\|645257_647180_-	PrkA family serine protein kinase	NA	NA	NA	NA
WP_003085081.1\|647458_647791_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_003113213.1\|647834_648686_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	1.1e-08	33.3
WP_003085085.1\|648685_649066_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_003161932.1\|649102_649909_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_023518325.1\|650024_651011_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_003109024.1\|651007_652300_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_033863060.1\|652280_655073_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_003137370.1\|655199_656216_+	phosphotransferase	NA	NA	NA	NA
WP_003117959.1\|656212_656887_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_003099547.1\|656888_657647_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_016263871.1\|657647_658709_-	DUF3530 family protein	NA	NA	NA	NA
WP_003109040.1\|658860_661254_+	PAS domain S-box protein	NA	NA	NA	NA
WP_003099542.1\|661302_661932_+	response regulator transcription factor	NA	NA	NA	NA
WP_003085106.1\|662060_663095_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_003085109.1\|663328_664438_+	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.8e-28	34.4
WP_003099539.1\|664493_665540_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014604087.1\|665654_666902_+	ABC transporter permease	NA	NA	NA	NA
WP_003085119.1\|667007_667838_+	ABC transporter permease	NA	NA	NA	NA
WP_003085122.1\|667961_668636_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_003099532.1\|668635_669454_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_003113204.1\|669526_671005_+	anthranilate synthase component I	NA	NA	NA	NA
WP_003113203.1\|671321_671636_-	transcription regulatory protein PrtN	NA	NA	NA	NA
WP_003113202.1\|671735_672506_-	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	1.4e-71	59.1
WP_003085132.1\|672963_673164_+	repressor PtrB	W6ATC1	Enterobacter_phage	3.7e-05	58.3
WP_003118907.1\|673211_673571_+	hypothetical protein	NA	NA	NA	NA
WP_003118908.1\|673933_674383_+	hypothetical protein	B5TK61	Pseudomonas_phage	5.0e-26	53.3
WP_003113200.1\|674404_674920_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	4.1e-32	42.9
WP_003121844.1\|674916_675474_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	6.0e-45	70.3
WP_003085143.1\|675626_675953_+	hypothetical protein	A0A2H4JA09	uncultured_Caudovirales_phage	3.2e-30	60.2
WP_003161928.1\|675949_676837_+	bacteriophage protein	S4TNY7	Salmonella_phage	4.1e-88	59.8
WP_003118911.1\|676829_677363_+\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	3.9e-62	64.6
WP_003161927.1\|677364_679470_+\|tail	phage tail fiber protein	Q9ZXK6	Pseudomonas_virus	3.0e-222	52.7
WP_016852415.1\|679477_679918_+	hypothetical protein	NA	NA	NA	NA
WP_003109051.1\|679960_681121_+\|tail	phage tail sheath family protein	Q38068	Phage_PS17	2.7e-188	83.4
WP_003085175.1\|681133_681637_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	8.0e-65	73.5
WP_003085178.1\|681651_681996_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_034043859.1\|682165_684403_+\|tail	phage tail length tape measure protein	NA	NA	NA	NA
WP_003085182.1\|684412_685285_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	3.9e-75	51.7
WP_003101635.1\|685259_685466_+	hypothetical protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.3e-18	64.2
WP_003109053.1\|685523_686513_+	phage late control D family protein	A0A2H4JBF6	uncultured_Caudovirales_phage	1.3e-106	55.8
WP_023518330.1\|686545_687175_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	1.2e-86	78.0
WP_014602438.1\|687171_687534_+	hypothetical protein	NA	NA	NA	NA
WP_003118919.1\|687530_687788_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	8.3e-18	64.6
WP_003113190.1\|688103_688598_+	hypothetical protein	A0A286S1Q8	Klebsiella_phage	1.4e-45	56.5
WP_004352265.1\|688609_688957_+	hypothetical protein	NA	NA	NA	NA
WP_003113188.1\|688986_689241_+	hypothetical protein	A0A2H4PI34	Pseudomonas_phage	6.3e-10	38.4
WP_023518331.1\|689287_691123_+\|tail	phage tail tape measure protein	A0A0S2SYD9	Pseudomonas_phage	1.3e-27	35.8
WP_023518332.1\|691115_691457_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	6.5e-18	40.9
WP_003118922.1\|691464_692160_+\|tail	phage minor tail protein L	A0A1B0VNE0	Pseudomonas_phage	1.5e-69	50.2
WP_023518333.1\|692162_692933_+\|tail	phage tail assembly protein	A0A2D1GNP8	Pseudomonas_phage	2.5e-81	56.0
WP_016252934.1\|692987_693590_+\|tail	tail assembly protein	A0A1V0E8A0	Vibrio_phage	4.9e-53	57.3
WP_023518334.1\|693648_697311_+\|tail	phage tail protein	A0A0S2SYC5	Pseudomonas_phage	0.0e+00	60.0
WP_016252936.1\|697307_697592_+	hypothetical protein	NA	NA	NA	NA
WP_016252937.1\|697588_698254_+	hypothetical protein	A0A0S2SYG5	Pseudomonas_phage	4.5e-55	44.4
WP_016252938.1\|698272_699373_+	hypothetical protein	A0A1W6JTA8	Pseudomonas_phage	2.0e-116	77.6
WP_025324545.1\|699372_699684_+	hypothetical protein	A0A1W6JTB1	Pseudomonas_phage	7.4e-45	85.4
WP_023518335.1\|699680_699926_+	hypothetical protein	A0A1W6JT87	Pseudomonas_phage	1.9e-27	84.2
WP_003113175.1\|700314_700920_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.6e-75	66.3
WP_003085203.1\|700921_701971_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
WP_014602442.1\|701967_702804_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	1.1e-69	56.5
WP_003085214.1\|702865_703510_-	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA
WP_003085219.1\|703781_704204_+	OsmC family protein	NA	NA	NA	NA
WP_003101641.1\|704523_705318_+	adenosylmethionine decarboxylase	NA	NA	NA	NA
WP_003085224.1\|705372_706020_-	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA
WP_003085225.1\|706119_706458_-	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_003121853.1\|706536_708018_+	AAA family ATPase	U5XJW0	Phormidium_phage	3.9e-67	33.8
WP_003161912.1\|708057_708858_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_003161911.1\|708918_709995_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_003117983.1\|710116_711085_-	nitronate monooxygenase	NA	NA	NA	NA
WP_003085245.1\|711101_711524_-	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_003085247.1\|711814_712849_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_003085249.1\|712848_713568_+	hypothetical protein	NA	NA	NA	NA
WP_003120826.1\|713568_713991_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_003085254.1\|714068_714419_+	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	3.0e-26	53.2
WP_023130557.1\|714472_715564_-	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_003142821.1\|715566_716910_-	peptidoglycan DD-metalloendopeptidase family protein	O03937	Lactobacillus_phage	3.0e-18	44.1
WP_003113167.1\|717194_718394_+\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_3

1187238 : 1281610

104

Pseudomonas_phage(57.14%)

tRNA,integrase,capsid,tail,holin,terminase,portal,protease,head

attL 1203681:1203701|attR 1286977:1286997

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003105024.1\|1187238_1187955_+\|holin	phosphatidylcholine/phosphatidylserine synthase	NA	NA	NA	NA
WP_003118297.1\|1188025_1188508_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_003092922.1\|1188574_1189276_+	hypothetical protein	NA	NA	NA	NA
WP_003119275.1\|1189268_1189583_+	GIY-YIG nuclease family protein	A0A2I7QNM5	Vibrio_phage	9.0e-06	42.7
WP_003105028.1\|1189611_1190301_+	CatB-related O-acetyltransferase	A0A2R8FE91	Brazilian_cedratvirus	4.1e-11	46.7
WP_003092916.1\|1190421_1191357_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003105033.1\|1191360_1192113_+	membrane protein	NA	NA	NA	NA
WP_003119277.1\|1192201_1193113_+	hypothetical protein	NA	NA	NA	NA
WP_003113787.1\|1193155_1194160_-	nucleoid-associated protein YejK	L7TI92	Pseudomonas_virus	7.5e-171	89.7
WP_023517988.1\|1194252_1195608_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_023125360.1\|1195681_1196152_-	hypothetical protein	NA	NA	NA	NA
WP_023517987.1\|1196255_1196798_+	hydrolase	NA	NA	NA	NA
WP_003100573.1\|1196787_1197684_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003118301.1\|1197807_1198419_+	glutathione S-transferase	NA	NA	NA	NA
WP_071535201.1\|1198548_1198734_+	DUF2165 family protein	NA	NA	NA	NA
WP_003111148.1\|1199025_1199376_-	CesT family type III secretion system chaperone	NA	NA	NA	NA
WP_003113791.1\|1199563_1200925_+	T3SS effector bifunctional cytotoxin exoenzyme S	NA	NA	NA	NA
WP_003092887.1\|1201014_1202025_-	23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF	NA	NA	NA	NA
WP_003092885.1\|1202116_1203949_-	SLC13 family permease	NA	NA	NA	NA
1203681:1203701	attL	NA	NA	NA	NA
WP_003092883.1\|1204068_1204863_-	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	2.9e-08	26.8
WP_003092881.1\|1204865_1205756_-	ABC transporter permease	NA	NA	NA	NA
WP_003100588.1\|1205839_1206817_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_123903204.1\|1208076_1208376_+	hypothetical protein	NA	NA	NA	NA
WP_123903205.1\|1208707_1209091_+	hypothetical protein	NA	NA	NA	NA
WP_048909923.1\|1209177_1209540_+	hypothetical protein	NA	NA	NA	NA
WP_003453781.1\|1209586_1212439_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.7e-148	36.8
WP_003453779.1\|1212559_1212928_-	hypothetical protein	NA	NA	NA	NA
WP_003100593.1\|1212939_1213368_-	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_003092867.1\|1213364_1214852_-	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	1.0e-51	36.1
WP_003119285.1\|1215188_1216001_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_023517986.1\|1216084_1217008_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_003092864.1\|1217199_1218318_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_003092863.1\|1218310_1219378_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_023517985.1\|1219509_1220007_-	RDD family protein	NA	NA	NA	NA
WP_023517984.1\|1220136_1221717_+	EAL domain-containing protein	NA	NA	NA	NA
WP_049859420.1\|1223048_1223447_+	hypothetical protein	NA	NA	NA	NA
WP_109392605.1\|1223617_1223944_-	hypothetical protein	H2BD79	Pseudomonas_phage	2.4e-25	50.5
WP_043487039.1\|1223985_1224591_-	hypothetical protein	NA	NA	NA	NA
WP_079279928.1\|1224700_1224907_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_124714932.1\|1225532_1226381_+	hypothetical protein	NA	NA	NA	NA
WP_043487037.1\|1226530_1226755_+	AlpA family phage regulatory protein	A0A1B0VNF0	Pseudomonas_phage	1.0e-16	72.4
WP_049859418.1\|1227236_1228022_+	hypothetical protein	NA	NA	NA	NA
WP_049859416.1\|1228018_1228774_+	hypothetical protein	A0A1X9SFG7	Acinetobacter_phage	2.9e-18	54.5
WP_023103742.1\|1228770_1229076_+	hypothetical protein	NA	NA	NA	NA
WP_023124259.1\|1229075_1229306_+	hypothetical protein	A0A1W6JTF8	Pseudomonas_phage	2.0e-39	98.7
WP_043487032.1\|1229302_1229566_+	hypothetical protein	NA	NA	NA	NA
WP_023517982.1\|1229565_1230504_+	Primosomal protein I	A0A125RNK1	Pseudomonas_phage	9.8e-32	41.8
WP_023517981.1\|1230500_1231289_+	ATP-binding protein	A0A0A0YRV1	Pseudomonas_phage	1.6e-144	98.1
WP_023518768.1\|1231285_1232716_+	replicative DNA helicase	A0A0A0YUG7	Pseudomonas_phage	2.8e-256	94.9
WP_023518767.1\|1232712_1232997_+	hypothetical protein	A0A1W6JTC1	Pseudomonas_phage	1.2e-38	89.8
WP_043487030.1\|1232993_1233551_+	hypothetical protein	A0A0A0YRV6	Pseudomonas_phage	1.0e-60	81.4
WP_033867904.1\|1233876_1234212_+\|holin	phage holin, lambda family	A0A2D1GNJ3	Pseudomonas_phage	7.5e-43	74.5
WP_023517978.1\|1234395_1234620_+	hypothetical protein	H2BDJ7	Pseudomonas_virus	6.4e-06	60.0
WP_043487029.1\|1234612_1234921_+	HNH endonuclease	NA	NA	NA	NA
WP_033953338.1\|1235068_1235557_+\|terminase	terminase small subunit	NA	NA	NA	NA
WP_023517977.1\|1235560_1237255_+\|terminase	terminase large subunit	Q3HQS7	Burkholderia_phage	5.4e-214	66.7
WP_124209068.1\|1237293_1238484_+\|portal	phage portal protein	A0A2H4PI10	Pseudomonas_phage	1.2e-138	62.3
WP_023517975.1\|1238499_1239357_+\|protease	Clp protease ClpP	A0A0U4B0F3	Pseudomonas_phage	2.8e-78	56.7
WP_079279927.1\|1239520_1240792_+\|capsid	phage major capsid protein	A0A2H4PI18	Pseudomonas_phage	4.1e-142	66.4
WP_023517973.1\|1240836_1241088_+	hypothetical protein	NA	NA	NA	NA
WP_079279907.1\|1241006_1241528_+	hypothetical protein	H2BDB2	Pseudomonas_virus	2.3e-51	55.4
WP_023517971.1\|1241524_1241857_+\|head,tail	phage gp6-like head-tail connector protein	H2BDB3	Pseudomonas_virus	1.3e-15	50.9
WP_023517970.1\|1241858_1242215_+\|head	phage head closure protein	H2BDB4	Pseudomonas_virus	4.7e-27	52.9
WP_043487349.1\|1242214_1243057_+	hypothetical protein	D4FUL8	Pseudomonas_phage	7.3e-103	64.5
WP_043487027.1\|1243004_1243622_+	methyltransferase domain-containing protein	B5WZS8	Pseudomonas_phage	1.4e-87	71.7
WP_023517967.1\|1243614_1244112_+	HK97 gp10 family phage protein	Q9MCA7	Pseudomonas_phage	4.5e-60	78.9
WP_043487026.1\|1244111_1244477_+	DUF3168 domain-containing protein	Q9MCA6	Pseudomonas_phage	5.7e-36	60.3
WP_023517966.1\|1244549_1245065_+\|tail	phage tail fibers	H2BDC0	Pseudomonas_virus	7.2e-45	54.2
WP_023517965.1\|1245067_1245427_+	hypothetical protein	Q9MCA4	Pseudomonas_phage	1.6e-54	91.6
WP_043487022.1\|1245753_1248282_+\|tail	phage tail tape measure protein	D4FUM0	Pseudomonas_phage	0.0e+00	87.3
WP_033946890.1\|1248278_1248758_+	hypothetical protein	A0A0U4K586	Pseudomonas_phage	9.6e-92	97.5
WP_023517963.1\|1248741_1249233_+	DUF1833 family protein	J7I404	Pseudomonas_phage	4.9e-91	99.4
WP_023082501.1\|1249237_1249645_+	hypothetical protein	J7HX80	Pseudomonas_phage	1.2e-74	100.0
WP_023517962.1\|1249616_1252346_+\|tail	phage tail fiber protein	H2BD95	Pseudomonas_phage	0.0e+00	98.2
WP_023517961.1\|1252406_1254398_+	Orf27	A0A0U4B0B2	Pseudomonas_phage	1.3e-49	67.1
WP_124188397.1\|1255227_1255620_+	hypothetical protein	NA	NA	NA	NA
WP_023517960.1\|1255678_1256308_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	8.7e-109	94.7
WP_043487018.1\|1256304_1256673_+	hypothetical protein	H2BDA0	Pseudomonas_phage	1.2e-41	77.0
WP_124188396.1\|1257132_1257396_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	2.5e-33	90.2
WP_023517958.1\|1257431_1257695_+	hypothetical protein	A0A0U4JX18	Pseudomonas_phage	9.0e-44	94.3
WP_049859410.1\|1259514_1260747_-\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	2.3e-145	65.4
WP_003137849.1\|1261111_1262155_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_003100607.1\|1262167_1263286_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	6.7e-96	49.9
WP_003092856.1\|1263329_1263668_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	5.8e-11	42.4
WP_003100609.1\|1263727_1265590_+	protein translocase subunit SecD	NA	NA	NA	NA
WP_003092852.1\|1265600_1266521_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.1e-51	44.3
WP_003092848.1\|1266704_1267253_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_003092845.1\|1267357_1268173_-	inositol monophosphatase	NA	NA	NA	NA
WP_003092842.1\|1268324_1269098_+\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_023517957.1\|1269097_1269874_+	serine O-acetyltransferase	NA	NA	NA	NA
WP_003092836.1\|1270018_1270510_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
WP_003092832.1\|1270539_1271754_+	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	2.3e-33	30.2
WP_003092829.1\|1271789_1272176_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.2e-52	79.8
WP_003100617.1\|1272203_1272527_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	9.8e-24	50.5
WP_003092824.1\|1272534_1273056_+	co-chaperone HscB	NA	NA	NA	NA
WP_003100622.1\|1273098_1274958_+	Fe-S protein assembly chaperone HscA	F2Y2E1	Organic_Lake_phycodnavirus	4.8e-107	40.1
WP_003092818.1\|1274964_1275303_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_003092814.1\|1275328_1275529_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_003092811.1\|1275772_1276204_+	nucleoside-diphosphate kinase	A0A167REB2	Powai_lake_megavirus	7.2e-22	41.7
WP_023517956.1\|1276228_1277368_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA
WP_023517955.1\|1277385_1278144_+	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA
WP_033862819.1\|1278140_1279190_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_023980157.1\|1279192_1280302_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_003092797.1\|1280320_1281610_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
1286977:1286997	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1422634 : 1486013

Pseudomonas_phage(85.0%)

tRNA,integrase,capsid,tail,holin,terminase,portal,protease,head

attL 1443197:1443215|attR 1493340:1493358

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003110619.1\|1422634_1423315_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_003098661.1\|1423388_1423736_+	hypothetical protein	NA	NA	NA	NA
WP_003143219.1\|1423754_1424621_+	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	8.8e-27	50.8
WP_023088108.1\|1424693_1425518_+	isocitrate lyase/phosphoenolpyruvate mutase family protein	NA	NA	NA	NA
WP_016263167.1\|1425522_1426218_+	hypothetical protein	NA	NA	NA	NA
WP_010793368.1\|1426273_1427059_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_017148395.1\|1427087_1428365_+	cytochrome P450	NA	NA	NA	NA
WP_003092468.1\|1428371_1429010_-	efflux system transcriptional repressor MexL	NA	NA	NA	NA
WP_003113855.1\|1429105_1430209_+	multidrug efflux RND transporter periplasmic adaptor subunit MexJ	NA	NA	NA	NA
WP_003092464.1\|1430213_1433291_+	multidrug efflux RND transporter permease subunit MexK	S5VL66	Leptospira_phage	4.3e-28	20.1
WP_003098644.1\|1433331_1434012_-	DUF4197 domain-containing protein	NA	NA	NA	NA
WP_003092458.1\|1434148_1434547_-	hypothetical protein	NA	NA	NA	NA
WP_023517932.1\|1434689_1437194_-	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_003138001.1\|1437477_1438401_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.2e-21	31.4
WP_023517931.1\|1438397_1439132_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_023517930.1\|1439142_1440990_+	gliding motility protein GldG	NA	NA	NA	NA
WP_023517929.1\|1440993_1441974_+	DUF4340 domain-containing protein	NA	NA	NA	NA
WP_003092439.1\|1441980_1442403_-	SufE family protein	NA	NA	NA	NA
WP_003098634.1\|1442399_1443605_-	cysteine desulfurase	Q2XUY6	environmental_halophage	3.0e-73	39.2
1443197:1443215	attL	NA	NA	NA	NA
WP_003092431.1\|1443699_1444734_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_023517928.1\|1444763_1445387_-	LysE family translocator	NA	NA	NA	NA
WP_003098619.1\|1445399_1445747_-	ArsC family reductase	NA	NA	NA	NA
WP_043487002.1\|1445813_1446917_-\|integrase	tyrosine-type recombinase/integrase	A0A0U4JIT5	Pseudomonas_phage	5.1e-205	99.2
WP_071534497.1\|1446897_1447140_-	excisionase	NA	NA	NA	NA
WP_043487000.1\|1447356_1447653_-	hypothetical protein	H2BDE7	Pseudomonas_virus	7.8e-44	87.6
WP_023517926.1\|1447725_1447929_-	hypothetical protein	A0A125RNQ4	Pseudomonas_phage	3.6e-32	98.5
WP_043486997.1\|1447925_1448222_-	hypothetical protein	Q9MC60	Pseudomonas_phage	1.5e-18	93.9
WP_043486994.1\|1448214_1448820_-	hypothetical protein	Q9MC58	Pseudomonas_phage	6.3e-24	54.5
WP_023517923.1\|1448989_1449238_-	hypothetical protein	H2BD39	Pseudomonas_phage	1.0e-36	92.7
WP_023517922.1\|1449234_1449864_-	hypothetical protein	H2BDG4	Pseudomonas_virus	2.0e-68	64.7
WP_023517921.1\|1450112_1450649_-	DUF4406 domain-containing protein	A0A1B0YZW9	Pseudomonas_phage	1.2e-95	94.4
WP_023517920.1\|1450645_1452181_-	DNA cytosine methyltransferase	A0A2I7QRH3	Vibrio_phage	2.5e-101	45.3
WP_023517919.1\|1452245_1452548_-	hypothetical protein	A0A1B0YZY4	Pseudomonas_phage	3.1e-40	96.0
WP_023517918.1\|1452547_1452910_-	hypothetical protein	A0A0U4KL54	Pseudomonas_phage	9.2e-47	84.2
WP_043486989.1\|1453296_1453545_-	hypothetical protein	A0A1B0YZY1	Pseudomonas_phage	6.5e-36	95.1
WP_023517916.1\|1453555_1453942_-	LuxR family transcriptional regulator	A0A1B0YZX7	Pseudomonas_phage	2.4e-61	94.4
WP_034013775.1\|1454159_1455026_-	ParB N-terminal domain-containing protein	A0A1B0YZX8	Pseudomonas_phage	1.8e-149	94.8
WP_023517914.1\|1455295_1455511_-	hypothetical protein	NA	NA	NA	NA
WP_023517913.1\|1455945_1456200_+	DUF1654 domain-containing protein	A0A127KNY9	Pseudomonas_phage	6.3e-26	70.4
WP_003085700.1\|1456253_1456592_-	hypothetical protein	NA	NA	NA	NA
WP_019396631.1\|1456609_1456903_-	hypothetical protein	NA	NA	NA	NA
WP_043486984.1\|1457015_1457756_-	helix-turn-helix transcriptional regulator	L7TH81	Pseudomonas_virus	4.8e-74	79.3
WP_079279906.1\|1458267_1458972_+	DNA-binding protein	A0A1B0YZY9	Pseudomonas_phage	2.2e-124	97.9
WP_043486980.1\|1459036_1459798_+	helix-turn-helix domain-containing protein	A0A1B0YZZ0	Pseudomonas_phage	2.2e-90	97.6
WP_043486977.1\|1459794_1460478_+	hypothetical protein	A0A1B0YZY6	Pseudomonas_phage	9.4e-125	98.7
WP_003159465.1\|1460474_1460681_+	hypothetical protein	A0A1B0YZY8	Pseudomonas_phage	3.1e-31	94.1
WP_021205616.1\|1460677_1461259_+	recombination protein NinG	A0A0U4KL68	Pseudomonas_phage	6.6e-103	95.3
WP_043486973.1\|1461255_1461552_+	hypothetical protein	A0A1B0YZZ2	Pseudomonas_phage	6.6e-43	87.8
WP_043486972.1\|1461589_1462264_+	hypothetical protein	A0A1B0YZZ3	Pseudomonas_phage	5.2e-120	99.6
WP_003098540.1\|1463142_1463325_-	type II toxin-antitoxin system HicA family toxin	A0A2H4JDU5	uncultured_Caudovirales_phage	2.5e-08	55.0
WP_158309806.1\|1463540_1464062_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	A0A1B0YZT9	Pseudomonas_phage	8.0e-68	75.7
WP_023517910.1\|1464245_1464560_+\|holin	phage holin, lambda family	A0A0A0YUH2	Pseudomonas_phage	9.8e-53	99.0
WP_023517909.1\|1464559_1465177_+	glycoside hydrolase family 19 protein	A0A0U4JP23	Pseudomonas_phage	3.0e-106	91.7
WP_043486969.1\|1465146_1465626_+	hypothetical protein	A0A0U4JX95	Pseudomonas_phage	1.3e-53	87.7
WP_079279905.1\|1465762_1466341_+	hypothetical protein	A0A0U4B0J6	Pseudomonas_phage	3.1e-28	52.7
WP_033940323.1\|1466247_1466730_+\|terminase	phage terminase small subunit P27 family	A0A2D1GNP3	Pseudomonas_phage	2.3e-61	74.4
WP_023465507.1\|1466733_1468461_+\|terminase	terminase large subunit	A0A2D1GNU5	Pseudomonas_phage	3.8e-271	76.7
WP_023517907.1\|1468460_1469684_+\|portal	phage portal protein	A0A2D1GNU4	Pseudomonas_phage	2.9e-193	82.3
WP_023465519.1\|1469661_1470315_+\|head,protease	HK97 family phage prohead protease	A0A2D1GNL2	Pseudomonas_phage	2.6e-100	82.6
WP_023517906.1\|1470325_1471528_+\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	2.7e-175	76.0
WP_023130881.1\|1471573_1471852_+	hypothetical protein	A0A2D1GNQ9	Pseudomonas_phage	8.4e-16	42.3
WP_023517905.1\|1471844_1472165_+\|head,tail	phage gp6-like head-tail connector protein	A0A2D1GNK0	Pseudomonas_phage	1.5e-29	57.1
WP_033955061.1\|1472187_1472370_+	hypothetical protein	A0A0U4K5G7	Pseudomonas_phage	1.6e-10	55.9
WP_023517904.1\|1472379_1472931_+	hypothetical protein	NA	NA	NA	NA
WP_043486965.1\|1472927_1473521_+	hypothetical protein	A0A0U4J906	Pseudomonas_phage	4.3e-102	98.0
WP_033955065.1\|1473533_1473971_+	hypothetical protein	A0A0U4IBQ1	Pseudomonas_phage	2.0e-72	95.9
WP_023517902.1\|1473994_1474780_+	hypothetical protein	A0A0U4ISK2	Pseudomonas_phage	1.1e-140	95.4
WP_023517901.1\|1474836_1475202_+	hypothetical protein	A0A0U4KLC4	Pseudomonas_phage	2.4e-58	98.3
WP_023465516.1\|1475246_1475396_+	hypothetical protein	NA	NA	NA	NA
WP_023517900.1\|1475385_1477527_+	tape measure protein	A0A0U3TH20	Pseudomonas_phage	0.0e+00	99.2
WP_003098501.1\|1477536_1478040_+	hypothetical protein	A0A0U4IIK1	Pseudomonas_phage	1.8e-93	100.0
WP_023517899.1\|1478041_1479745_+	hypothetical protein	A0A0U4JP39	Pseudomonas_phage	0.0e+00	96.5
WP_014602605.1\|1479747_1480158_+	hypothetical protein	A0A1B0YZV0	Pseudomonas_phage	1.3e-65	97.1
WP_034006700.1\|1480157_1480703_+	hypothetical protein	A0A0A0YWE1	Pseudomonas_phage	2.3e-94	95.0
WP_003159482.1\|1480715_1481138_+	hypothetical protein	A0A1W6JT91	Pseudomonas_phage	7.7e-69	96.4
WP_003159483.1\|1481124_1482624_+	hypothetical protein	A0A1W6JT90	Pseudomonas_phage	1.1e-223	82.1
WP_003159484.1\|1482646_1483234_+	hypothetical protein	A0A0U4B0K9	Pseudomonas_phage	1.3e-103	96.4
WP_003159486.1\|1483226_1483418_+	hypothetical protein	A0A1B0Z2L3	Pseudomonas_phage	7.0e-30	100.0
WP_023132451.1\|1483422_1483983_+	hypothetical protein	A0A1B0YZW5	Pseudomonas_phage	8.0e-98	97.3
WP_014602608.1\|1483982_1484264_+	hypothetical protein	A0A1W6JTD4	Pseudomonas_phage	4.3e-44	97.8
WP_043486960.1\|1484256_1485189_+	hypothetical protein	A0A1B0YZW2	Pseudomonas_phage	3.7e-172	97.1
WP_041025232.1\|1485188_1485488_+	hypothetical protein	A0A1B0YZW1	Pseudomonas_phage	1.6e-49	98.0
WP_014602610.1\|1485484_1485712_+	hypothetical protein	A0A0U3DK06	Pseudomonas_phage	5.4e-21	71.0
WP_079279904.1\|1485734_1486013_+	hypothetical protein	A0A0U4JEI3	Pseudomonas_phage	6.0e-46	96.7
1493340:1493358	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1530728 : 1539757

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003098558.1\|1530728_1531364_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-40	52.3
WP_031639387.1\|1531409_1532303_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
WP_003113871.1\|1532407_1533412_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
WP_003092272.1\|1533838_1534162_-	ferredoxin family protein	NA	NA	NA	NA
WP_003113873.1\|1534228_1536796_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	3.2e-24	22.1
WP_023517892.1\|1536921_1537929_-	TolB family protein	NA	NA	NA	NA
WP_003092262.1\|1538076_1538583_+	CinA family protein	B5TK85	Pseudomonas_phage	8.1e-57	76.0
WP_003092260.1\|1538716_1539757_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5

DBSCAN-SWA_6

2630530 : 2637424

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003097631.1\|2630530_2631811_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.2e-98	45.4
WP_003160439.1\|2631812_2633210_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003108775.1\|2633214_2634189_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_009314043.1\|2634276_2635260_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	1.2e-141	74.0
WP_021264897.1\|2635256_2635592_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	9.5e-38	68.5
WP_003090391.1\|2635588_2635894_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_003090389.1\|2635893_2636253_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.4e-34	61.7
WP_003090387.1\|2636249_2636645_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.7e-47	72.1
WP_003090386.1\|2636755_2637424_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1

DBSCAN-SWA_7

3464484 : 3502925

Pseudomonas_phage(35.0%)

integrase,plate,capsid,transposase,lysis,tail

attL 3452464:3452480|attR 3482831:3482847

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3452464:3452480	attL	NA	NA	NA	NA
WP_003111265.1\|3464484_3465105_+\|integrase	tyrosine-type recombinase/integrase	A0A142F2H8	Mycobacterium_phage	1.8e-05	32.7
WP_071534050.1\|3466012_3466696_-	hypothetical protein	NA	NA	NA	NA
WP_019681438.1\|3467281_3467662_-	DNA-binding protein	NA	NA	NA	NA
WP_019681439.1\|3467646_3468066_-	regulatory protein GemA	Q6QIE7	Burkholderia_phage	2.6e-29	53.4
WP_023518623.1\|3468067_3468757_-	DUF2786 domain-containing protein	A0A0S4L2R2	Pseudomonas_phage	5.9e-127	99.6
WP_043487314.1\|3468758_3468962_-	hypothetical protein	A0A076FR31	Pseudomonas_phage	8.6e-10	54.0
WP_019726693.1\|3468963_3469587_-	DUF3164 family protein	A0A0S4L2U9	Pseudomonas_phage	8.0e-107	97.6
WP_043487312.1\|3469579_3470224_-	hypothetical protein	J9SNC1	Pseudomonas_phage	2.0e-15	82.0
WP_023518620.1\|3470223_3470481_-	hypothetical protein	A0A0S4L2V0	Pseudomonas_phage	3.5e-24	71.8
WP_023518619.1\|3470525_3470864_-	hypothetical protein	NA	NA	NA	NA
WP_019396413.1\|3470865_3472098_-	AAA family ATPase	J9SNL1	Pseudomonas_phage	3.4e-85	46.9
WP_023518618.1\|3472107_3473883_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q5ZR04	Pseudomonas_phage	5.2e-74	32.6
WP_049859798.1\|3473906_3474866_-	hypothetical protein	J9RW58	Pseudomonas_phage	1.4e-65	66.8
WP_023518616.1\|3474911_3475226_-	hypothetical protein	J9SUN0	Pseudomonas_phage	4.7e-39	78.8
WP_023518615.1\|3475222_3475456_-	hypothetical protein	NA	NA	NA	NA
WP_023518614.1\|3475448_3475934_-	hypothetical protein	Q6QID6	Burkholderia_phage	1.5e-44	55.8
WP_019396407.1\|3476268_3476493_-	DNA-binding protein	Q6QID3	Burkholderia_phage	2.0e-28	87.3
WP_125000261.1\|3477012_3477615_+	hypothetical protein	NA	NA	NA	NA
WP_023518613.1\|3478146_3478614_+	Structural protein P5	J9Q7Y7	Salmonella_phage	1.7e-37	53.4
WP_019396467.1\|3478610_3478832_+	hypothetical protein	NA	NA	NA	NA
WP_023518612.1\|3479006_3479618_+\|lysis	Rz lysis protein	J9SVN7	Pseudomonas_phage	4.0e-42	49.3
WP_023518611.1\|3479624_3479852_+	hypothetical protein	Q9ZXI6	Pseudomonas_virus	2.0e-07	40.8
WP_019683422.1\|3479857_3480136_+	DUF2730 family protein	J9STR5	Pseudomonas_phage	5.3e-10	43.6
WP_023434349.1\|3480132_3480426_+	hypothetical protein	J9SNG3	Pseudomonas_phage	4.5e-28	68.8
WP_019396462.1\|3480427_3480979_+	DUF3486 family protein	J9SH37	Pseudomonas_phage	5.0e-28	45.3
WP_019682230.1\|3480975_3482595_+	hypothetical protein	A0A219VH72	Ochrobactrum_phage	4.3e-112	45.1
WP_019682229.1\|3482591_3484088_+	DUF935 family protein	Q6QIC0	Burkholderia_phage	1.2e-161	59.6
3482831:3482847	attR	NA	NA	NA	NA
WP_079279924.1\|3484108_3484903_+\|capsid	minor capsid protein	A0A1C6ZDL9	Pseudomonas_phage	2.6e-86	62.2
WP_023518607.1\|3484899_3485382_+	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	6.0e-17	36.6
WP_019726713.1\|3485616_3486720_+	hypothetical protein	A4JWJ9	Burkholderia_virus	8.7e-88	47.2
WP_023518604.1\|3486735_3487659_+	hypothetical protein	A4JWK0	Burkholderia_virus	1.2e-82	50.5
WP_023518603.1\|3487666_3487996_+	hypothetical protein	NA	NA	NA	NA
WP_023518602.1\|3487999_3488332_+	DUF2190 family protein	Q6QIB4	Burkholderia_phage	1.0e-23	57.3
WP_019681673.1\|3488334_3488766_+	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	1.4e-38	56.2
WP_023518601.1\|3488765_3489245_+	hypothetical protein	NA	NA	NA	NA
WP_019396453.1\|3489241_3489478_+	hypothetical protein	A4JWK4	Burkholderia_virus	3.3e-05	44.6
WP_023518600.1\|3489474_3490902_+\|tail	phage tail sheath monomer	A4JWK5	Burkholderia_virus	2.8e-179	65.5
WP_019396451.1\|3490902_3491427_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	4.2e-48	56.6
WP_043487298.1\|3491585_3492167_+	hypothetical protein	NA	NA	NA	NA
WP_023518598.1\|3492280_3492595_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_023518597.1\|3492931_3495619_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	1.2e-98	35.3
WP_023518596.1\|3495618_3496488_+\|tail	phage tail protein	A4JWL1	Burkholderia_virus	6.5e-22	29.5
WP_019396445.1\|3496487_3496703_+	membrane protein	Q6QIA3	Burkholderia_phage	1.0e-16	54.4
WP_079279923.1\|3496702_3497785_+	late control protein D	Q6QIA2	Burkholderia_phage	4.6e-57	39.2
WP_043487294.1\|3497781_3498312_+\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	1.1e-16	33.8
WP_019681832.1\|3498375_3498759_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	9.5e-34	60.2
WP_023518594.1\|3498736_3499858_+\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	8.0e-89	49.2
WP_019396439.1\|3499850_3500405_+\|tail	tail fiber protein	Q6QI98	Burkholderia_phage	1.4e-46	53.6
WP_023518593.1\|3500404_3502456_+	hypothetical protein	Q9ZXK6	Pseudomonas_virus	1.6e-199	57.9
WP_043487290.1\|3502469_3502925_+\|tail	phage tail protein	Q9ZXK5	Pseudomonas_virus	3.4e-30	46.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_022808

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection