CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_022886	Helicobacter pylori BM012A, complete sequence	3 crisprs	c2c9_V-U4,cas3,DEDDh	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_022886_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_022886_1

653278-653375

Orphan

Consensus_repeat	Method
TTAAAAACGCTAAAAAGGATTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_022886_1

>merge|NC_022886|1|653278-653375|CRISPRCasFinder
TTAAAAACGCTAAAAAGGATTTTTTCATTTTTAAAATTATCGCTTGCTTTTGGCAAGCTCTTTGATTGTTGGTTATAAAAAACGCTAAAAAGGATTTT

>NC_022886|1|1|653278-653375|CRISPRCasFinder
TTAAAAACGCTAAAAAGGATTTT	TTCATTTTTAAAATTATCGCTTGCTTTTGGCAAGCTCTTTGATTGTTGGTTA
TAAAAAACGCTAAAAAGGATTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_022886.1\|WP_023591944.1\|647102_647984_+\|polysaccharide-deacetylase	unknown	unknown	gnl\|CDD\|200563
NC_022886.1\|WP_023591948.1\|650305_651268_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597
NC_022886.1\|WP_023591949.1\|651273_652419_-\|YbfB/YjiJ-family-MFS-transporter	unknown	unknown	gnl\|CDD\|284247
NC_022886.1\|WP_162146321.1\|661932_662670_-\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|280099
NC_022886.1\|WP_023591946.1\|648740_649850_-\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|334588
NC_022886.1\|WP_023591950.1\|652828_653083_-\|hypothetical-protein	unknown	unknown	unknown
NC_022886.1\|WP_023591954.1\|657084_658710_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|273085
NC_022886.1\|WP_023591945.1\|648037_648730_-\|hypothetical-protein	unknown	unknown	unknown
NC_022886.1\|WP_023591943.1\|646211_647090_+\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|143587
NC_022886.1\|WP_023591958.1\|662799_663513_+\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|234700
NC_022886.1\|WP_023591952.1\|653737_655969_-\|Hop-family-adhesin-BabA	unknown	unknown	gnl\|CDD\|375731
NC_022886.1\|WP_000508588.1\|658712_658952_-\|twin-arginine-translocase-TatA/TatE-family-subunit	unknown	unknown	gnl\|CDD\|234822
NC_022886.1\|WP_023591942.1\|645723_646128_+\|hypothetical-protein	unknown	unknown	unknown
NC_022886.1\|WP_023591955.1\|659635_661240_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273344
NC_022886.1\|WP_023591947.1\|649943_650306_+\|hypothetical-protein	unknown	unknown	unknown
NC_022886.1\|WP_000551229.1\|659022_659643_-\|guanylate-kinase	unknown	unknown	gnl\|CDD\|213788
NC_022886.1\|WP_023591953.1\|656268_657024_-\|HugZ-family-heme-oxygenase	unknown	unknown	gnl\|CDD\|200360
NC_022886.1\|WP_023591959.1\|663530_664214_+\|pseudaminic-acid-cytidylyltransferase	unknown	unknown	gnl\|CDD\|274660
NC_022886.1\|WP_001885479.1\|645444_645708_+\|AtpZ/AtpI-family-protein	unknown	unknown	gnl\|CDD\|378198
NC_022886.1\|WP_023591956.1\|661381_661924_+\|endonuclease	unknown	unknown	gnl\|CDD\|184389

Protein	Function_ID	Function_description	E-value
NC_022886.1\|WP_023591944.1\|647102_647984_+\|polysaccharide-deacetylase	gnl\|CDD\|200563	cd10938, CE4_HpPgdA_like, Catalytic domain of Helicobacter pylori peptidoglycan deacetylase (HpPgdA) and similar proteins. This family is represented by a peptidoglycan deacetylase (HP0310, HpPgdA) from the gram-negative pathogen Helicobacter pylori. HpPgdA has the ability to bind a metal ion at the active site and is responsible for a peptidoglycan modification that counteracts the host immune response. It functions as a homotetramer. The monomer is composed of a 7-stranded barrel with detectable sequence similarity to the 6-stranded barrel NodB homology domain of polysaccharide deacetylase (DCA)-like proteins in the CE4 superfamily, which removes N-linked or O-linked acetyl groups from cell wall polysaccharides. In contrast to typical NodB-like DCAs, HpPgdA does not exhibit a solvent-accessible polysaccharide binding groove, suggesting that the enzyme binds a small molecule at the active site.	1.32776e-140
NC_022886.1\|WP_023591948.1\|650305_651268_+\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	3.64876e-93
NC_022886.1\|WP_023591949.1\|651273_652419_-\|YbfB/YjiJ-family-MFS-transporter	gnl\|CDD\|284247	pfam06779, MFS_4, Uncharacterized MFS-type transporter YbfB. This family represents putative bacterial membrane proteins which may be sugar transporters. Members carry twelve transmembrane regions which are characteristic of members of the major facilitator sugar-transporter superfamily.	1.08131e-21
NC_022886.1\|WP_162146321.1\|661932_662670_-\|outer-membrane-beta-barrel-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.05518e-51
NC_022886.1\|WP_023591943.1\|646211_647090_+\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|143587	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy.	6.98884e-89
NC_022886.1\|WP_023591954.1\|657084_658710_-\|arginine--tRNA-ligase	gnl\|CDD\|273085	TIGR00456, Arginine--tRNA_ligase, arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. [Protein synthesis, tRNA aminoacylation].	0
NC_022886.1\|WP_023591946.1\|648740_649850_-\|site-specific-DNA-methyltransferase	gnl\|CDD\|334588	pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.	2.62766e-42
NC_022886.1\|WP_023591958.1\|662799_663513_+\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|234700	PRK00249, flgH, flagellar basal body L-ring protein FlgH.	1.12359e-85
NC_022886.1\|WP_023591952.1\|653737_655969_-\|Hop-family-adhesin-BabA	gnl\|CDD\|375731	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain. This is the N-terminal extracellular adhesion domain of Sialic acid binding adhesin (SabA) present in Helicobacter pylori. The N-terminal domain of SabA functions as a sugar-binding adhesion domain with conserved disulfide bonds. Notably, these amino acid residues are not only conserved among SabA orthologs but also between SabA and BabA.	4.94885e-70
NC_022886.1\|WP_001885479.1\|645444_645708_+\|AtpZ/AtpI-family-protein	gnl\|CDD\|378198	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophobic stretches and is presumed to be a subunit of the enzyme. It carries two transmembrane helices and is a magnesium or calcium uniporter. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI.	1.53877e-10
NC_022886.1\|WP_000551229.1\|659022_659643_-\|guanylate-kinase	gnl\|CDD\|213788	TIGR03263, Guanylate_kinase, guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions].	9.65117e-100
NC_022886.1\|WP_023591955.1\|659635_661240_-\|hypothetical-protein	gnl\|CDD\|273344	TIGR00927, retinal_rod, K+-dependent Na+/Ca+ exchanger. [Transport and binding proteins, Cations and iron carrying compounds].	7.47378e-10
NC_022886.1\|WP_023591953.1\|656268_657024_-\|HugZ-family-heme-oxygenase	gnl\|CDD\|200360	TIGR04109, heme_ox_HugZ, heme oxygenase, HugZ family. Members of this protein family are HugZ, a class of heme oxygenase that belongs to the PPOX family (pfam01243) and lacks homology to the HmuO family (pfam01126). Characterized members of this family include HP0318 from Helicobacter pylori and CJ1613c from Campylobacter jejuni. This enzyme releases iron during the conversion of heme to biliverdin.	1.45419e-138
NC_022886.1\|WP_023591959.1\|663530_664214_+\|pseudaminic-acid-cytidylyltransferase	gnl\|CDD\|274660	TIGR03584, PseF, pseudaminic acid cytidylyltransferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.	3.19847e-119
NC_022886.1\|WP_000508588.1\|658712_658952_-\|twin-arginine-translocase-TatA/TatE-family-subunit	gnl\|CDD\|234822	PRK00720, tatA, twin-arginine translocase TatA/TatE family subunit.	2.67082e-20
NC_022886.1\|WP_023591956.1\|661381_661924_+\|endonuclease	gnl\|CDD\|184389	PRK13912, PRK13912, nuclease NucT; Provisional.	4.57917e-96

>NC_022886.1|WP_023591950.1|652828_653083_-|hypothetical-protein
MPNSSTKKDYTKYSEKQLVNLIHQLERKIKKMQNDRVSFKEKMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRDCCKTRQS
>NC_022886.1|WP_023591949.1|651273_652419_-|YbfB/YjiJ-family-MFS-transporter
MRVFVCFLGVFVSNGLARFGYVVLIPLLILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFLICYFDSIPFFWLWIWRFIAGVASSALMILVAPLSLPYVKEHKKALVGGLIFSAVGIGSVFSGFVLPWISSYNIKWAWIFLGGSCLIAFILSLVGLKTRSLRKKSVKKEESAFKIPFHLWLLLISCALNAIGFLPHTLFWVDYLIRHLNISPTIAGTSWAFFGFGATLGSLISGPMAQKLGAKNANIFILILKSIACFLPIFFHQISLLNLSIFIMGAATTANINLFSMMALKIAGAKHFAKASSWVVFSFGIFQALFSYLFTIFLGDLGYVLIFVICGACLVLSFIVLFPIKMQTAINK
>NC_022886.1|WP_023591948.1|650305_651268_+|GTP-binding-protein
MPKIPITLITGFLGSGKTSFLSEYLNQIDHQGVALIINEIGQAALDQRILSVQYCGEKMLYLNAGCVCCNKRLDLMESLKATLNNYEWRGEILRRIIIETTGLANPAPILWTILSDTFLGAHFEIQSVVACVDALNARTHLTNNEAREQIVFADSVLLTKTDLQNDSAALMKLKERLQSINPSAEIFDKRAIDYESLFSRKNRAHRVILPAKDSHSQGFETLSINFEGAMEWSAFGIWLSLLLHQYGTQILRIKGIIDIGSGFLVSVNGVMHIVYPPKHILKDQNGSHLVFITRHLEREKILNSLKGFKDFLGIKGFETP
>NC_022886.1|WP_023591947.1|649943_650306_+|hypothetical-protein
MCVLCGELISSFHWSDENYGSDENLKEPNALISTNENARERKRARLKRVRLLNQILAFYGLKINDWQGAKFVLCDKKGQSVIVNDLGDLWGKAQKLAKKEMDALDSNLLAFLNQNTQATH
>NC_022886.1|WP_023591946.1|648740_649850_-|site-specific-DNA-methyltransferase
MQDYRTLTLENIYAPDEITDALSLLQSCGIESIVNPSNITLNFDIVDLKMLESTTQNTLVQKTLEELYKIRSFSSQNGKIVFKSFNKAKKVANKKQNAKARLTYESYKKEFSKETNEIQSCLNQIYCEDSLEFLKKLPNNCIDIVLTSPPYNFGINYNATQDTNLWQEYFNTLFAIFKECIRVLKSGGRIIVNIQPMFSDYIPTHHFISKFFIDEGLIWKGEILWEKNNYNCKYCTWGSWKSPAAPYLKYSWEFIEIFCKNSLKKEGDKDSIDITDDEFKKWVYGKWNFAPERNMKQYGHDAMFPEELVKRCLKLFSYQNDIILDPFNGAGTTTKVAKQLGRHFIGIDISEKYCEVARARLKEVTNLFN
>NC_022886.1|WP_023591945.1|648037_648730_-|hypothetical-protein
MSSIEDIIRVYNSVVKDIDKDAQEQDSRAYGGVIRSAKGKLLEHISEEIVKIAWQNIGAKADRLEINSNKIKIPIKDSYIENIANKQVRAYILERKKDYYYGLSVDKHIFVDNQLVMGIECKAYTENAMLKRILVDFHLLKTLYPNISCYLFQLESQLGGDYSALPETLLGSKPTHSIMSYFESVNLNIVTLLKGERDINQPIHKNFKPLDEQILNKTIKLMENELKVYS
>NC_022886.1|WP_023591944.1|647102_647984_+|polysaccharide-deacetylase
MAKEILVAYGVDIDAVAGWLGSYGGEDSPDDISRGLFAGEVGIPRLLKLFKKYHLPATWFVPGHSIETFPEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDVLLKSIELIKDLTGKAPTGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDFTPYFVRVGDSWSKIDYSLEAKDWMKPLIRGVETDLVEIPANWYLDDLPPMMFIKKSPNSFGFVSPHDIGQMWIDQFDWVYREMDYAVFSMTIHPDVSARPQVLLMHEKIIEHINKHEGVRWVTFNEIADDFLKRNPRKK
>NC_022886.1|WP_023591943.1|646211_647090_+|carbon-nitrogen-hydrolase-family-protein
MKAKNPAKRILKTAVIQMQSKPYALNENLQLALNLAKEAHNKGANLIVLPELFDSGYCVNDKDAEFGIDFKAIEHGELKNESLRALNNFAKSNKVHLVACSIEKTNKKLYDSAYIISPKGKIVGKHRKIYLWGDEKSRFRRGKKYEVFTLDFGDFSAKVGLQICYEIGFGVGANLLALQGAEILIYPSAFGKARAYNWDLLSRARALENGCFVCACNHSGEETNAQLKQTLEFAGDSRIIAPNGKIIAQATKLNEVVIAEMDLNEVALQRQKIPYLQDFDTKLTKKGFGKLT
>NC_022886.1|WP_023591942.1|645723_646128_+|hypothetical-protein
MCQIKCLLVLLSINIVSAIIVYFFQAFQGVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQNSIEKEEKQKFQKFALGLEMSFNVWRLGGYGVLLGILGALLFLHLFNGLIFLIGVFVSSLSSALLRFLNNNGKF
>NC_022886.1|WP_001885479.1|645444_645708_+|AtpZ/AtpI-family-protein
MKKPKYYKFIEGANYLSLGLSMVVAILMGVAIGYGLKKLTHVSWLFWLGVIWGVLASFLNVYKAYKNMQKDYEELAKDPKYTQNKTK
>NC_022886.1|WP_023591952.1|653737_655969_-|Hop-family-adhesin-BabA
MKKHILSLTLGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYEKLNNLLTRYSTLNTLIKLSADPSAVNAARENLGASAKNLIGDKANSPTYQAVLLAINAAVGFWNVLGYATQCGGNADGQESTSSTTIFNNEPGYRSTSITCSLNGYKPGYYAPMSIENFKKLNEAYQILQTALKNGLPALKENNGTVNVTYTYTCSGEGNNNCSSKATGVSKQDGGTKTETKTIDGKSVTTTISSKVVNSGASSNTSHVSYTEITNKLDGVPNSAQALLAQASTLINTINSACPFFSVTNNSSPNAPKMEPTKGKLCGFTEEISAIQKMITDAQELVNQTSVINNHEQSTPIGNNNGKPFNPFTDASFAQGMLANASAQAKMLNLAHQVGQTINPENLTGNFKNFVTGFLATCNNKSTAGTNGTQGSAPGTVTTQTFASGCAYVGQTITNLENSIAHFGTQEQQIEQAENIADTLVNFKSRYGELGNTYNSITTALSSIPNAQSLQNVVSKKNNPYSPQGIETNYYLNQNTYNQIQTINQELGRNPFRKVGIVSSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARPKKKGSDHVAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY
>NC_022886.1|WP_023591953.1|656268_657024_-|HugZ-family-heme-oxygenase
MLNRIIEHMNAHHVEDMKGLLKKFGQVHHAENVAFKSVDPQGIVIGYNHNQTLRIEFNHEVKDPKDYKNAIIELCQSVEKTHDLKGVEEEVKAFKESFDSVCLATLHPSGHVVCSYAPLMSDGKQYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAKSAILRKRLRYKTNARFIERGAEFDKAFDSFIEKTGGAGGIKTIRTMQDFHLIALDFKEGRFVKGFGQAYDILGDKIAYVGDKGNPHNFAHKK
>NC_022886.1|WP_023591954.1|657084_658710_-|arginine--tRNA-ligase
MHTLIKGVLEEILEEEVIIEYPKDREHGHYATPIAFNLAKVFKKSPLVIAEELALKISAHEKTQGLFDSVVACKGYINFTLSLDLLERFTQKALELKEQFGSQIKSERSQKIFLEFVSANPTGPLHIGHARGAVFGDSLAKIARFLGHEVLCEYYVNDMGSQIRLLGLSVWLAYREHVLKESVTYPEVFYKGEYIIEIAKKANNDLEPSLFKENEETIIEVLSGYAKDLMLLEIKDNLDALGIHFDSYASEKEIFKHKDAVFERLEKANALYEKDSKIWLKSSLYQDESDRVLIKEDKSYTYLAGDIVYHDEKFKQNYTKYINIWGADHHGYIARVKASLEFLGYDSNKLEVLLAQMVRLLKDNEPYKMSKRAGNFILIKDVVDDVGKDALRFIFLSKRLDTHLEFDVNTLKKQDSSNPIYYIHYANSRIHTMLEKSPFSKEEVLQTPLTNLNAEEKYLLFSALSLPKAIESSFEEYGLQKMCEYAKTLASEFHRFYNAGKILDTPKAKELLKICLMVSLSLSNAFKLLGIEIKTKISAKD
>NC_022886.1|WP_000508588.1|658712_658952_-|twin-arginine-translocase-TatA/TatE-family-subunit
MGGFTSIWHWVIVLLVIVLLFGAKKIPELAKGLGSGIKNFKKAVKDDEEEAKNEPKTLDAQATQTKVHESSEIKSKQES
>NC_022886.1|WP_000551229.1|659022_659643_-|guanylate-kinase
MHNDFNLLILSGPSGAGKSTLTKYLQEKIPKTHFSLSTTTRKPREGEVDGLHYNFVSEEEFKQGIEKGQFLEWAIVHNHYYGTSKIPVEKALKEGKIVIFDIDVQGHEILKKHYPNACSVFISTKNQEILKERLLLRGTDSKETIEKRLINAYKEMQCLESFDYLIINEDLEKSKEIILSIAKTLVHRLKAFNFEKICKAWKNESL
>NC_022886.1|WP_023591955.1|659635_661240_-|hypothetical-protein
MKMILFNQNPMITKLLESVSKKLELPMENFNHYQELSACLKEDPEWILIADDEYLEKLDQADWLELKEIISQNKNSVCMYKKGNEAQPFLEGFEMKIKKPFLPTEVLKILQKKLGSNINELEPSQNLDPTQEVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQKEKEEVKEEVKETPQEKEKPKDDEIQEGETLKDEEVSKELETQEELEIPKEETQEQAKEQEPIKEETQEEPIKEETQEIKEEKQEKTQDSPSTQELEAMQELVKEIQENSNEDKKEIQENTETPQDVEIPQAQDKETQELEIPKEETQENAETPQDVENQAQEIQDKEIQETQEIQENTETQESAEIPQDVEIPQDVEIPQDVEIPQDVEIPQDVENPQETPQEKETPQTQEKETPKDENTQESVQNLQEKEIQEAQDETPQEDHYESIEDIPEPVMAKAMGEELPFLNEAAAKIPNNENDIKTPKESDIKTPQEKEESDKTSSPLELRLNLQDLLKSLNQESLKSLLENKTLSIKITLEDKKPNA
>NC_022886.1|WP_023591956.1|661381_661924_+|endonuclease
MLNKFKKIVGVSVLVGCLGVLQAKNSLFVLPYEQRDALNSLVSGISNARESVKIAIYSFTHRDIARAIKSVASRGIKVQIIYDYESNHNNKQSTIGYLDKYPNTKVCLLKGLKAKNGNYYGIMHQKVAIIDDKIVFLGSANWSKNAFENNYEVLLKTDDTETILKAKSYYQKMLGSCVGF
>NC_022886.1|WP_162146321.1|661932_662670_-|outer-membrane-beta-barrel-protein
MRTLLKMLVGASLLTHALIAKEESAAPSWTKNLYMGVNYQTGSINLMTNIHEVREVTNYQTGYTNIITSVNSVRKLTNMGSNGIGLVMGYNHFFHPDKILGLRYFAFLDWQGYGMRYPKGYYGGNNMITYGVGVDAMWNFFQGSFYQDDISVDIGVFGGIAIAGNSWYIGSKGQELLGITNSRAVDNTSFQFLFNFGLKALFVDEHEFEIGFKFPTINNKYYTTDALKVQMRRVFAFYVGYNYHF
>NC_022886.1|WP_023591958.1|662799_663513_+|flagellar-basal-body-L-ring-protein-FlgH
MKKALYLGAVAFSVAFSMVSANEPKIDFNPPSYVEETPSKEFIPELNKLGSLFGQGERPLFADRRAMKPNDLITIIVSEKASANYSSSKDYKSASGGNSTPPRLTYNGLDERKKQEAEYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGNKEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNKKKFAADAMETQMPY
>NC_022886.1|WP_023591959.1|663530_664214_+|pseudaminic-acid-cytidylyltransferase
MRAIAIVLARSSSKRIKNKNIIDFFNKPMLAYPIEAALNSKLFEKVFISSDSMEYVHIAKNYGASFLNLRPKVLADDKATTLEVMAYHMKELELKDEDIACCLYGTSALLQEKHLKNAFETLKENTDYVFTCAPFSASPYRSFSLENGVQMAFKEHFNTRTQDLKTLYHDAGLLYMGKAQAFKEMRPIFSPNSIALELSPLEVQDIDTLEDLELAKLKYSRLKNACQ

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Crispr_ID: NC_022886_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_022886_2

1337084-1337223

TypeV-U4

Consensus_repeat	Method
AATTCTTCTAGTTTTTTTGAAATGATTTCTTCAGTAACGCTAGAGAGCCT	CRISPRCasFinder

1 spacers

c2c9_V-U4

The CRISPR arrays of NC_022886_2

>merge|NC_022886|2|1337084-1337223|CRISPRCasFinder
AATTCTTCTAGTTTTTTTGAAATGATTTCTTCAGTAACGCTAGAGAGCCTCTCTCCATCATGCTTGCCCTCTAGGGTTTCTTTGCTTTGTAATTCTTCTTGTTTTTTTGAAATGATTTCTTCAGTAACGCTAGAGAGCCT

>NC_022886|2|2|1337084-1337223|CRISPRCasFinder
AATTCTTCTAGTTTTTTTGAAATGATTTCTTCAGTAACGCTAGAGAGCCT	CTCTCCATCATGCTTGCCCTCTAGGGTTTCTTTGCTTTGT
AATTCTTCTTGTTTTTTTGAAATGATTTCTTCAGTAACGCTAGAGAGCCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_022886.1\|WP_023592490.1\|1344372_1345236_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|227308
NC_022886.1\|WP_023592492.1\|1347549_1348812_+\|P-type-conjugative-transfer-protein-TrbL	unknown	unknown	gnl\|CDD\|226365
NC_022886.1\|WP_023591539.1\|1345286_1345940_+\|IS607-like-element-IS607-family-transposase	unknown	unknown	gnl\|CDD\|239738
NC_022886.1\|WP_038420169.1\|1348884_1349568_+\|hypothetical-protein	unknown	unknown	unknown
NC_022886.1\|WP_023592475.1\|1332149_1333766_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NC_022886.1\|WP_023592474.1\|1331223_1331892_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239486
NC_022886.1\|WP_023592470.1\|1324003_1325794_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NC_022886.1\|WP_000201853.1\|1328427_1329459_-\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|272961
NC_022886.1\|WP_023592471.1\|1325808_1327659_-\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|129308
NC_022886.1\|WP_023592489.1\|1342206_1342539_-\|hypothetical-protein	unknown	unknown	unknown
NC_022886.1\|WP_023591540.1\|1345914_1347174_+\|transposase	c2c9_V-U4	-	gnl\|CDD\|223747
NC_022886.1\|WP_023592477.1\|1335324_1336206_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NC_022886.1\|WP_038420166.1\|1337605_1337911_-\|hypothetical-protein	unknown	unknown	unknown
NC_022886.1\|WP_023592476.1\|1333774_1335325_+\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
NC_022886.1\|WP_080261103.1\|1327661_1328441_-\|flagellar-assembly-protein-FliH	unknown	unknown	gnl\|CDD\|235850
NC_022886.1\|WP_038420164.1\|1336705_1337044_-\|lysozyme	unknown	unknown	gnl\|CDD\|381597
NC_022886.1\|WP_023592495.1\|1349855_1350533_-\|type-IA-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|223624
NC_022886.1\|WP_023592491.1\|1347269_1347548_+\|hypothetical-protein	unknown	unknown	unknown
NC_022886.1\|WP_023592473.1\|1329476_1331180_-\|flagellar-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|129310
NC_022886.1\|WP_080261104.1\|1338098_1338575_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807

Protein	Function_ID	Function_description	E-value
NC_022886.1\|WP_023592490.1\|1344372_1345236_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|227308	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair].	8.91355e-11
NC_022886.1\|WP_023592492.1\|1347549_1348812_+\|P-type-conjugative-transfer-protein-TrbL	gnl\|CDD\|226365	COG3846, TrbL, Type IV secretory pathway, TrbL components [Intracellular trafficking and secretion].	2.66453e-114
NC_022886.1\|WP_023591539.1\|1345286_1345940_+\|IS607-like-element-IS607-family-transposase	gnl\|CDD\|239738	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.	1.24788e-64
NC_022886.1\|WP_023592475.1\|1332149_1333766_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_022886.1\|WP_023592474.1\|1331223_1331892_-\|hypothetical-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	2.96233e-15
NC_022886.1\|WP_023592470.1\|1324003_1325794_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NC_022886.1\|WP_000201853.1\|1328427_1329459_-\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|272961	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family. [Cellular processes, Chemotaxis and motility].	6.16419e-166
NC_022886.1\|WP_023592471.1\|1325808_1327659_-\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|129308	TIGR00204, 1-deoxy-D-xylulose-5-phosphate_synthase, 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine, Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	0
NC_022886.1\|WP_023591540.1\|1345914_1347174_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.68849e-42
NC_022886.1\|WP_023592477.1\|1335324_1336206_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	3.21899e-66
NC_022886.1\|WP_023592476.1\|1333774_1335325_+\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_022886.1\|WP_080261103.1\|1327661_1328441_-\|flagellar-assembly-protein-FliH	gnl\|CDD\|235850	PRK06669, fliH, flagellar assembly protein H; Validated.	4.14175e-64
NC_022886.1\|WP_038420164.1\|1336705_1337044_-\|lysozyme	gnl\|CDD\|381597	cd00735, T4-like_lys, bacteriophage T4-like lysozymes. Bacteriophage T4-like lysozymes hydrolyze the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc) in peptidoglycan heteropolymers of prokaryotic cell walls. Members include a variety of bacteriophages (T4, RB49, RB69, Aeh1), as well as Dictyostelium.	3.78157e-13
NC_022886.1\|WP_023592495.1\|1349855_1350533_-\|type-IA-DNA-topoisomerase	gnl\|CDD\|223624	COG0550, TopA, Topoisomerase IA [DNA replication, recombination, and repair].	1.63818e-62
NC_022886.1\|WP_023592473.1\|1329476_1331180_-\|flagellar-M-ring-protein-FliF	gnl\|CDD\|129310	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF). Component of the M (cytoplasmic associated) ring, one of four rings (L,P,S,M) which make up the flagellar hook-basal body which is a major portion of the flagellar organelle. Although the basic structure of the flagella appears to be similar for all bacteria, additional rings and structures surrounding the basal body have been observed for some bacteria (eg Vibrio cholerae and Treponema pallidum). [Cellular processes, Chemotaxis and motility].	0
NC_022886.1\|WP_080261104.1\|1338098_1338575_-\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	2.05166e-35

>NC_022886.1|WP_038420164.1|1336705_1337044_-|lysozyme
MLRLNKLILAASFLIVDSEGFSPSVYTDKTGHPTIGYGYNLSVYSYWGKRITKAYGLLTDILKKNHKALLSYGWYKNLDAMRRMVILDLSYNLGLSGLLKFKQSIKAIEETE
>NC_022886.1|WP_023592477.1|1335324_1336206_+|RluA-family-pseudouridine-synthase
MPFVEEEFEILKPTKALFLVRDVLKCSLKEAQRHLDKQRLKHNQQVVRKSQMIQGVVSLIHFKPNEKTQVLVFETKDFGVFDKPHQVYTHPKGYFYHESLLDCIQSHFSKNAHPAHRLDYETSGLVLAGKTLQSVKDLKALFMQKKVKKTYLALAHGLVEKSMKIDKPILTPQNIQKDLRIRSKISPLGKPSITLVEPLSYNPFLDISLLKITPLTGRTHQIRLHLSSINHRIVGEGLYGVADENAREYLQLKRENNAPLLMLHASSLEFEFKGANYKITSQIPKRFMPFLKD
>NC_022886.1|WP_023592476.1|1333774_1335325_+|single-stranded-DNA-specific-exonuclease-RecJ
MKQKLKAQIKERVASIAYNEKGFPSPFLFKDLKKAALKIIEAMQINTEILVVGDYDADGVISSAIMAKFFESLNYKHVRIIIPNRFIDGYGISKKFLEKHHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLHHDEIPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLINSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNLKRKMIQQQVFEEAFKHAMVGEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSARSSSNIDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKVLPFCKTEPPLTLKLKDIDRELLEIIEAGEPYGQENPEPLFQARNLEVIEEKIIKESHQILRFKDKECVKEAIYFNAERFLKAGEKVSAIFSVELDECSNEPKMFVKSLL
>NC_022886.1|WP_023592475.1|1332149_1333766_+|CTP-synthase-(glutamine-hydrolyzing)
MDRAKFIFVTGGVLSSLGKGISSSSIATLLQHCNYQVSILKIDPYINIDPGTMSPLEHGEVFVTSDGAETDLDIGHYERFLNRNLTRLNNFTTGQIFSSVIENERKGEYLGKTIQIVPHVTDEIKRRIRSAAKGLDFLIVEVGGTVGDMEGMFYLEAIRQLKLELGNEKVINVHVTLIPYIQTTNELKTKPTQHSVQELRRLGVTPQIILARSPKPLDKELKNKIALSCDVEQDSVIVATDTKSIYACPILFLQEGILTPIARRFNLNKLHPKMAAWNTLVEKIIAPKHKVKIGFVGKYLSLKESYKSLIEALIHAGAHLDVQVNIEWLDSENFNEKTDLEGVDAILVPGGFGERGIEGKICAIQRARVEKLPFLGICLGMQLAIVEFCRNVLGLKGANSTEFNQRCEYPVVYLIGDFMDQNHQKQVRTYNSPLGGTMRLGEYECEIMPNSLLEKAYKKPNIKERHRHRYEINPKYRQEWENKGLKVVGFGANHLIEAIELEDHPFFVGVQFHPEFTSRLQSPNPIILDFIKSALHKS
>NC_022886.1|WP_023592474.1|1331223_1331892_-|hypothetical-protein
MAENSFKNVSTQPKVFFLLPVKTLFLLGGIFSAFFILIAGLVFFDYAHLMDNAIFNFARSTPFNSSPILTLILQNIANLGSSQFVLPLSLLVGVFLSLYRRNLALGVWFVLSVILFEALLESLKHLFAHPVQWLSHSANFPNATALSLTLFYGLLILLIPHLITHQTLKNVLFYSLFGLIFLIGLALIVLGVSFSSVLGGFCLGALGACFSIGIYLSVFQKI
>NC_022886.1|WP_023592473.1|1329476_1331180_-|flagellar-M-ring-protein-FliF
MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSRDDTILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSNIGPVQGLKDNKEQEKYEKSQNTTNYEVGKTISEIKGEFGTLVRLNAAVVVDGRYKIALKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEFNPITPMLDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIRGTLKERPDEIAMLFKLLIKDEISSDNAKG
>NC_022886.1|WP_000201853.1|1328427_1329459_-|flagellar-motor-switch-protein-FliG
MATKLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAVLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYLGKIKPQQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIVKLDNFAIREILKVADKKDLSLALKTSTKDLTDKFLNNMSSRAAEQFVEEMQYLGAVKIKDVDVAQRKIIEIVQSLQEKGVIQTGEEEDVIE
>NC_022886.1|WP_080261103.1|1327661_1328441_-|flagellar-assembly-protein-FliH
MSLNSRKNLIQKDHLNKHDIQKYEFKSMANLPPKTNPNGASLETPNHPEEPLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEESKVLIENAKNDGYKIGFKEGEEKMRNELTHSVNEEKNQLLHAITALDEKMKKSEDHLMALEKELSAIAIDIAKEVILKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKIKLESNEAISKGGVMITSSNGSLDGNLMERFKTLKESVLENFKV
>NC_022886.1|WP_023592471.1|1325808_1327659_-|1-deoxy-D-xylulose-5-phosphate-synthase
MQNKTFDLNPNDIVGLELVCQTLRSRILEVVSANGGHLSSSLGAVELIVGMHALFDCQKNPFIFDTSHQAYAHKLLTGRFESFSTLRQFKGLSGFTKPSESAYDYFIAGHSSTSVSIGVGVAKAFCLKQALGMPIALLGDGSISAGIFYEALNELGDRKYPMIMILNDNEMSISTPIGALSKALSQLMKGPFYQSFRSKVKKILSTLPESVNYLASRFEESFKLITPGVFFEELGINYIGPINGHDLSAIIETLKLAKELKEPVLIHAQTLKGKGYKIAEGRYEKWHGVGPFDLDTGLSKKSKSAILSPTEAYSNTLLELAKKDEKIVGVTAAMPSGTGLDKLIDAYPLRFFDVAIAEQHALTSSSAMAKEGFKPFVSIYSTFLQRAYDSIVHDACISSLPIKLAIDRAGIVGEDGETHQGLLDVSYLRSIPNMVIFAPRDNGTLKNAVRFANEHDSSPCAFRYPRGSFALKEGVFEPSEFVLGQSELLKKEGEILLIGYGNGVGRAHLVQLALKEKNIECALLDLRFLKPLDPNLSAIIAPYQKLYVFSDNYKLGGVASAILEFLSEQNILKPVKSFEIMDEFIMHGNTALVEKSLGLDTESLTDAILKDLGQER
>NC_022886.1|WP_023592470.1|1324003_1325794_-|elongation-factor-4
MKNIRNFSIIAHIDHGKSTLADCLISECNAISNREMKSQVMDTMDIEKERGITIKAQSVRLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIALDNNLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSNANEVSAKAKLGIKDLLEKIITTIPAPSGDFNAPLKALIYDSWFDNYLGALALVRIMDGSINTEQEILVMGTGKKHGVLGLYYPNPLKKIPTKSLECGEIGIVSLGLKSVTDIAVGDTLTDAKNPTFKPIEGFMPAKPFVFAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFGFRVGFLGLLHMEVIKERLEREFSLNLIATAPTVVYEVHLTDNSIKYIQNPSELPPENHIACIKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDKLKSCTKGYASFDYEPIENREAHLVKLDVRVAGDVVDALSIIIDKNKAYEKGRALVETMKELIPRQLFEVAIQASVGNKIIARETIKSVGKNVTAKCYGGDITRKRKLLEKQKEGKKRMKAIGKVELPQEAFLAILKID
>NC_022886.1|WP_038420166.1|1337605_1337911_-|hypothetical-protein
MKIMHQVKDFLDFCKQTIHKNSNEAFQKTKRALFKEKSQKIREQAVKIVEKRLKKEGMKLSDFNEEELKIIFEAEEKRLLEQIQTKHFKEVWEKGDNEQGK
>NC_022886.1|WP_080261104.1|1338098_1338575_-|sel1-repeat-family-protein
MPPKQSRSLQTSFRKSYGRGVEKNLIKAAYFYSKACDLKDGGGCGNLGVLYQNGQGVEKDLTKAAYLYSKACELKDGLGCKDLGSLYYNGKGVEKNLIKAAQLYTKACELKEGGGCGALGGLYYNGDGVKRDSKKAAQYISKACKLGDQEACEALKEK
>NC_022886.1|WP_023592489.1|1342206_1342539_-|hypothetical-protein
MKIIIDNSGSMNENGKKEALQLWLLAFEQLAKNKNTDMQKWDLKGLKGEFEDALLLNDGHFTEEIQVKSSVAFGADANMIKLKEISSKVFDSAEIFQVLHFMKKVDAIKQ
>NC_022886.1|WP_023592490.1|1344372_1345236_+|tyrosine-type-recombinase/integrase
MSDCKMSRVSRELFNNIKSFLHHKLKTMIRIQSVNDLQLVLKWQDRVLECQSLIALKELNRKLYNQGIRHTIMMQGLFLFFEYFDNRIKLKSLHDLAEEQVIDFLFGLAKNRKPSSMAKYVMYLRQFFDYLDKKRNYSFDFELKNLSFAKKETHLPKHLNKNDFKAFVQALLKYHPKTSFEKRNQCILLLIALGGLRKFEALDLELKNIALENNHYRLLIKGKNNKERYAYIEKEFLQIPLNAWLSDTKRLKSFKGRFVFKKAKNNTTQKTCSLKGYKQKLKYYNNL
>NC_022886.1|WP_023591539.1|1345286_1345940_+|IS607-like-element-IS607-family-transposase
MNKRMLSIGQASKLLGVTIQTLRNWDKKDLLKPDELTKGGERRYKLESLRRINRNIVFNQDELKTIAYARVSSHDQQDDLIRQVQVLELYCARCGFNYEVIQDLGSGMNYYKKGLTKLLNLILDNQVKRLVLTHKDRLLRFGAELVFSICEAKEVEVVIINKGDENVRFEEELAKDVLEIITVFSARLYGSRSKKNKKLLDEMQEVITNNVSYLNHA
>NC_022886.1|WP_023591540.1|1345914_1347174_+|transposase
MSAISITHKIALKPNNKHITYFKKAFGCARLAYNWGLAKWKENYQLGIKTNHLQLKKEFNALKKSQFNFVYEVTKYATQQPFIHLNLAFNKFFRDLKKGLVSYPKFKKKREFQGSFYIGGDQIKIIQTVNTDYLKIPNLPPIKLTEKLRFQGKIHNATITQKGDHFYVSISCGIDESEYKRTHKLQESHNKLGIDIGIKSFVSLSNGLNIYAPKPLDKLTRKLVRISRQLSKKIHPKTKGDKTKKSNNYLKHSKKLTHLHEKIANIRLDFLHKLTSSLIRHSSSFCLESLKVKNMFKNHRLAKSLSDVSMSVFNTLLEYKAKYSNKEILRADTYYPSSKTCSNCQKVKQDLKLKDRVYQCLECGFELDRDINAAINLLKHLVGRVTAEFTPMDLTALLNDLSNNRLATSKVELGIQQKS
>NC_022886.1|WP_023592491.1|1347269_1347548_+|hypothetical-protein
MFKSRLNSWILLGIFGLLVVVFWDVIKYKIEDLKHAHYLSQVKEREEYYKNHIEEALKKDSECLEKGGDKADCSAAMRIAAGERIRRMLEIK
>NC_022886.1|WP_023592492.1|1347549_1348812_+|P-type-conjugative-transfer-protein-TrbL
MAAPLLALPFLSNPLVLGALAVIGTGAYLLYNKQDSLVMQADGLYSDILGFFISFSNKILKEIGEPLANVVQPFGMVLGVLLILLYSFKRYQNNDLFEIKTFLMLFVFVGYLSLYHYAFKSDGSSSVNGRSSFAFQNHVTEIFDAPANLLNAGISNVVKEYQTNSAGEYKKIDARHSITNANISFHVRQILSSLNKLYEVFTINNGLSPKTLIAAVLLLVILGLEFFLLFKVFCYVFMTYLEKIIYLSLVIFMLPLGFFQQTRGFLVSYVKKIISLTFYMPLLLLLVLFNSFALQYAIKVGGSNEIVAKFGIIVVIGISLAFIQKVPEMINAIFGTQGGLTDAKSFVYQGVQIASAGAGAIAGSLKSAGRSAFGRTLESYKDAKSTINSTTANMRDMPGHPGVRVGVETIELPKSHRASK
>NC_022886.1|WP_038420169.1|1348884_1349568_+|hypothetical-protein
MQDLQHFKNDITLILSRERLDTYDSLEQYKENLKLISFITPKISSLEIYLRNALDYCLTQIKGSDWVFSEYSLTNLINEQKEKKKEITHSLILSKMSLGAVIRLIFCYKLEGVILDLKRINFKSYYPNNKNALFINNKKNPLSSASKVHIALNLLWTIRNRAYHWENLLKTKPNNRPRITTYFTGLKDNDRAKIPMNISVEPSKIVLFLDDLIKSIGNKDLENLSSL
>NC_022886.1|WP_023592495.1|1349855_1350533_-|type-IA-DNA-topoisomerase
MKDSVIIIESPNKVEKIKQLTGAEVYATIGHFTNLIGVDIENNFACKFEIKEDKAKKINFLINACRDKKVYIATDPDREGYGIGYQFYEKIKNVASEIYRAEFHEITPSGIESGLKNAVLFSRSNTNLYQSFLGRIASDQVVGFALTSYLRKSLNLSELSAGRVQTPALALICQRDQEIRDFDKLDAEEKVEYQIQANIVCNEKEAIIKHVRVLSLKFLSSLILM

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Crispr_ID: NC_022886_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_022886_3

1445086-1445170

Orphan

Consensus_repeat	Method
CATGCGAGAAGTAGTGGTTCAAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_022886_3

>merge|NC_022886|3|1445086-1445170|CRISPRCasFinder
CATGCGAGAAGTAGTGGTTCAAGAACGCTTCAAGGGAGTTTTCTTTGATCTCTGCATGGGCATGCGAGAAGTAGTGGTTCAAGAA

>NC_022886|3|3|1445086-1445170|CRISPRCasFinder
CATGCGAGAAGTAGTGGTTCAAGAA	CGCTTCAAGGGAGTTTTCTTTGATCTCTGCATGGG
CATGCGAGAAGTAGTGGTTCAAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_022886.1\|WP_023592560.1\|1438184_1438811_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|273490
NC_022886.1\|WP_023592566.1\|1446392_1447700_+\|hypothetical-protein	unknown	unknown	unknown
NC_022886.1\|WP_000486466.1\|1448648_1449209_+\|pyruvate-flavodoxin-oxidoreductase-subunit-gamma	unknown	unknown	gnl\|CDD\|180284
NC_022886.1\|WP_000656174.1\|1449224_1449617_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|236596
NC_022886.1\|WP_023592556.1\|1433178_1434213_-\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|273487
NC_022886.1\|WP_023592559.1\|1437242_1438115_-\|Sel1-like-repeat-protein-HcpC	unknown	unknown	gnl\|CDD\|223861
NC_022886.1\|WP_023592561.1\|1438829_1440656_-\|phosphogluconate-dehydratase	unknown	unknown	gnl\|CDD\|130264
NC_022886.1\|WP_023592569.1\|1453304_1454138_+\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NC_022886.1\|WP_023592570.1\|1454142_1456119_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NC_022886.1\|WP_023592562.1\|1440722_1442000_+\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223441
NC_022886.1\|WP_023592568.1\|1451916_1453239_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|181437
NC_022886.1\|WP_023592571.1\|1456188_1456905_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|139585
NC_022886.1\|WP_001126880.1\|1442680_1443691_+\|glucokinase	unknown	unknown	gnl\|CDD\|129832
NC_022886.1\|WP_023592557.1\|1434744_1436280_+\|hypothetical-protein	unknown	unknown	unknown
NC_022886.1\|WP_023592564.1\|1443860_1444907_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
NC_022886.1\|WP_000124331.1\|1449626_1450850_+\|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181999
NC_022886.1\|WP_023592558.1\|1436300_1437053_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187604
NC_022886.1\|WP_000238135.1\|1450862_1451807_+\|pyruvate-ferredoxin-oxidoreductase-subunit-beta	unknown	unknown	gnl\|CDD\|239471
NC_022886.1\|WP_023592563.1\|1442010_1442694_+\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|273494
NC_022886.1\|WP_023592567.1\|1447706_1448369_-\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099

Protein	Function_ID	Function_description	E-value
NC_022886.1\|WP_023592560.1\|1438184_1438811_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|273490	TIGR01182, KHG/KDPG_aldolase_., Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida [Amino acid biosynthesis, Glutamate family, Energy metabolism, Entner-Doudoroff].	2.03158e-111
NC_022886.1\|WP_023592571.1\|1456188_1456905_-\|hypothetical-protein	gnl\|CDD\|139585	PRK13460, PRK13460, F0F1 ATP synthase subunit B; Provisional.	0.00261993
NC_022886.1\|WP_023592564.1\|1443860_1444907_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	4.2515e-163
NC_022886.1\|WP_000656174.1\|1449224_1449617_+\|4Fe-4S-binding-protein	gnl\|CDD\|236596	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed.	5.72644e-84
NC_022886.1\|WP_023592556.1\|1433178_1434213_-\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|273487	TIGR01179, UDP-glucose_4-epimerase, UDP-glucose-4-epimerase GalE. Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described by a separate model. [Energy metabolism, Sugars].	0
NC_022886.1\|WP_023592559.1\|1437242_1438115_-\|Sel1-like-repeat-protein-HcpC	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	4.33539e-47
NC_022886.1\|WP_023592561.1\|1438829_1440656_-\|phosphogluconate-dehydratase	gnl\|CDD\|130264	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous. [Energy metabolism, Entner-Doudoroff].	0
NC_022886.1\|WP_023592569.1\|1453304_1454138_+\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	5.3906e-32
NC_022886.1\|WP_023592570.1\|1454142_1456119_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NC_022886.1\|WP_023592562.1\|1440722_1442000_+\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|223441	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism].	0
NC_022886.1\|WP_023592568.1\|1451916_1453239_+\|adenylosuccinate-lyase	gnl\|CDD\|181437	PRK08470, PRK08470, adenylosuccinate lyase; Provisional.	0
NC_022886.1\|WP_001126880.1\|1442680_1443691_+\|glucokinase	gnl\|CDD\|129832	TIGR00749, Glucokinase_Glucose_kinase., glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models. [Energy metabolism, Glycolysis/gluconeogenesis].	0
NC_022886.1\|WP_000486466.1\|1448648_1449209_+\|pyruvate-flavodoxin-oxidoreductase-subunit-gamma	gnl\|CDD\|180284	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated.	3.48516e-128
NC_022886.1\|WP_000124331.1\|1449626_1450850_+\|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha	gnl\|CDD\|181999	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha.	0
NC_022886.1\|WP_023592558.1\|1436300_1437053_+\|SDR-family-oxidoreductase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.16985e-146
NC_022886.1\|WP_000238135.1\|1450862_1451807_+\|pyruvate-ferredoxin-oxidoreductase-subunit-beta	gnl\|CDD\|239471	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.	6.58599e-136
NC_022886.1\|WP_023592563.1\|1442010_1442694_+\|6-phosphogluconolactonase	gnl\|CDD\|273494	TIGR01198, 6-phosphogluconolactonase_6PGL., 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with [Energy metabolism, Pentose phosphate pathway].	2.97985e-92
NC_022886.1\|WP_023592567.1\|1447706_1448369_-\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	6.12066e-36

>NC_022886.1|WP_023592564.1|1443860_1444907_+|NAD(P)-dependent-alcohol-dehydrogenase
MRVPSKGFAIFSKDGHFKPHDFSRHAVGPKDVLIDILYAGICHSDVHSAYSEWKEGIYPMVPGHEIAGVIKEVGKEVKKFKVGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPALSVFDFIHLGNRKVYGSLIGGIKETQEMMDFSIKHNIYPEIDLILGKDIDTAYHNLTHGKAKFRYVIDMKKSFD
>NC_022886.1|WP_001126880.1|1442680_1443691_+|glucokinase
MPKTETYPRLLADIGGTNARFGLEVAPRQIECIEVLRCEDFESLSDAVRFYLSKCKESLKLHPIYGSFAVATPIMGDFVQMTNNHWTFSIETTRQCLDLKKLLVINDFVAQAYAISAMQENDLAQIGGIKCEINAPKAILGPGTGLGVSTLIQNSDGSLKVLPGEGGHVSFAPFDDLEILVWQYARSKFNHVSAERFLSGSGLVLIYEALSKRKGLEKVAKLSKAELTPQIISERALNGDYPICRLTLDTFCSMLGTLAADVALTLGARGGVYLCGGIIPRFIDYFKTSPFRARFETKGRMGAFLASIPVHVVMKKTPGLDGAGIALENYLLHDKI
>NC_022886.1|WP_023592563.1|1442010_1442694_+|6-phosphogluconolactonase
MGYQLFEFENLKDCHKALIERFKEFFNTALKKHHQVSIAFSGGRSPIGLLQKLSVLDLKWHACLISLVDERIIDTSHKDSNTKLLHDYLLQNNALKASFTPLLPKKISGDTNALFHFANQHFKQPHLAILGMGTDGHTASLFPETSAFLNEEKENIVLTKPINAPYERLSMSVNALENCEKLFLSISGVEKRGVLERALKENAPYSLPIARILHSKKVTTEVFYAKN
>NC_022886.1|WP_023592562.1|1440722_1442000_+|glucose-6-phosphate-dehydrogenase
MLDFDLVLFGATGDLAMRKLFVSLYEIYTHYGFKKDSKIIASGRKELSDEEFLALLCEKTQLHSREKGEEYLAHISYFCVRLDNPKDFEELSKIATKNKPLIFYFSISPSFFATTAQHLAKNALNHANTRLILEKPLGHDLKTCKEIFQSISAFFKEEQIFRIDHYLGKKGVQNILELRLNNPILNILWDQISAVEICVYETLGVEERGEFYDKIGALRDMVQNHLLQVLSLIATDLPNDLKDLRKEKIKVLKTLQPPKDFKKQVIRAQYQGYRDENKVHKESQTETFIAIKAFLDTPKFKGVPFYLKHAKKMPRNQASVKIHFNAVNTLEFFLSQDKITLTLQDHQNPLILETHNKQEFLQPYAKLLYDAIQNNHNNFAHQLELEASWVFIDTLIEGFMNNATPLYSYESHHLNESEFLKPLYQ
>NC_022886.1|WP_023592561.1|1438829_1440656_-|phosphogluconate-dehydratase
MPKHSLEQIKEKITERSKKTRELYLENIFNPKNQPKIESLGCANIAHVTASMPEHLKMPLGSHKRKHFAIITAYNDMLSAHQPFKNYPDWIKKELQEHNAYASVASGVPAMCDGITQGYDGMELSLFSRDVIALSTAVGLSHNVFDGAFFLGVCDKIVPGLLIGALSFGNLASVFVPSGPMVSGIENYKKAKARQDFAMGKINREELLKVEMQSYHDVGTCTFYGTANSNQMMMEFMGLHVANSSFINPNNPLRKVLVEESAKRLASGKVLPLAKLIDEKSVLNALIGLMATGGSTNHTLHLIAIARSCGVILNWDDFDAVSNLIPLLAKVYPNGSADVNAFEACGGLAFVIKELLKEGLLFEDTHTIMDTKTQKGMQNYTKTPFLENDQLVYKDAVNHSLNTDILRPVSEPFAANGGLKILKGNLGRAVIKISAIKDEHRKVKARAIVFKTQSEFLERFKNKELERDFVAVLPFQGPKSNGMPELHKLTTNLGALQDMGYKVALVTDGRMSGASGKVPSAIHLSPEGALNGAIIKIKDGDWIELDAPNNALNVLEKDFEKRGINPLFLETLENLEKPSFGLGRELFTSLRLNVNTAEEGGMSFGIKV
>NC_022886.1|WP_023592560.1|1438184_1438811_-|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MQDKIIEVLQISPIVPVVVVEDIKDAVPLAQSLVEGGIPIIEVTLRSSCALEAIELIAKNVPKMRVGAGTILNPTQLEQAQNRGAEFLISPGLTIKLLEHAKKKDMPLIPGVSSSSEVMQALEWGYNALKFFPAEYCGGVKLLNAFNGPFKGVKFCPTGGISTDNMRSYLNLENVLCVGGSWLTPKNLIQNKEWDKITEICKRALALR
>NC_022886.1|WP_023592559.1|1437242_1438115_-|Sel1-like-repeat-protein-HcpC
MLENVKKSLFRVLCLGALCLGGLMAEQDPKELVGLGAKSYKEQDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKMVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAAKNFKEALDRYSKACEMQNGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQLKIKV
>NC_022886.1|WP_023592558.1|1436300_1437053_+|SDR-family-oxidoreductase
MAHILVSGATSGFGLEIAKAFLQKNHVVFGTGRRKENLQELQLAYPKHFIPLCFDLKNKLETKRAIETIFSMTDRIDALINNAGLALGLNKAYECELDDWEIMIDTNIKGLLYLTRLILPSMIEHNQGTIINLGSIAGTYAYPGGNVYGASKAFVKQFSLNLRADLAGTNIRVSNVEPGLCGETEFSMVRFKGDKIKAQSVYENTIYLKPQDIANIVLWIYEQPLHVNINRIEIMPVSQTFAPLPTHKNP
>NC_022886.1|WP_023592557.1|1434744_1436280_+|hypothetical-protein
MKKLLYTTLALLLIGLLTTYLILFTEWGNKIIASYIEKKINPNERYLSVKTFKLRFNSLDFKAQANDDSTLILKGDFSLLKQSVDLNYHIDIKNLRSFKEWIPYPLRGAIITSGNIKGHRKALMIQGVSNVAQSHTAYNALLDDFKLSHLSLNAQDANLEDLLYLINRPAYANAKVSLQADFNSLKPLEGHLILTANNALINNALINQMFHLNLKDTLIFSLSHSSDFKESKAISDTTLTSPLGNFTALKSEYLFSILKLNAPYTLEIPNLAKLYNITNHPLKGSLTLKGAIEQSPKLLKVSGHSNLLDGALDFTLFNKDLKGRFSNISTLKALDLFHYPKFFQSIADANLDYDFIAKQGALKARLKNARFLKNAFSDFLYSISKFDITKEIYNDANLVSQINQQRLLSSLSLKSPKTQLKIHNGLLDLNTKQMDMLMDAEILKFIFKMKLQGNMHQPKFSLILNEKAIQQNLQQGLKEILKNDTLKKGLDHLLKDDKLKEKLEKGLKGLF
>NC_022886.1|WP_023592556.1|1433178_1434213_-|UDP-glucose-4-epimerase-GalE
MALLFTGACGYIGSHTARAFLEKTKENIIIVDDLSTGFLEHLKALEHYYPNRVVFVQANLNETHKLDAFLNKQQLKDPIEAILHFGAKISVEESTRLPLEYYTNNTLNTLELVKLCLKHAIKRFIFSSTAVVYGESDFSLNEESPLNPINPYGASKMMSERILLDTSKIADFKCVILRYFNVAGACMHNDYTTPYTLGQRTLNATHLIKIACECAVGKRKKMGIFGTNYPTRDGTCIRDYIHVDDLANAHLASYQTLLEKNKSEIYNVGYNQGHSVKEVIEKVKEISNNDFLVEILDKRQGDPASLIANNAKILQNTPFKPLYNNLDTIIKSALDWEEHLLRFQ
>NC_022886.1|WP_023592566.1|1446392_1447700_+|hypothetical-protein
MIFLKKSLYALLFSGFLIPPLIKAASFVYDLKFMSFNFNLVAPANNPYWNSLTKMQGRLMPQIGVQLDKRQALMFGAWFIQNLHTHYSYFPYSWGVTMYYQYIGKNLRFFLGIVPRSYQIGHYPLSAFKKLFWFIDPTFRGGAFQFKPAYDPNRWWNGWFEGVVDWYGGRNWNNQPKKKNYDFDQFLYFVSSEFQFLKGYLGLGGQLVIFHNASPHSMGDNYPYGGNSYLKPGDATPQWPNGYPYFSQKNNPQGGEIGKYSNPTILDRVYYHAYLKADFKNLMPYMDNIFMTFGTQSSQTHYCVRYASECKNARFYNSFGGEFYAQAQYKGFGIFNRYYFSNKPQMHFYATYGQSLYTGLPWYRAPNFDMIGLYYLYKNKWLSVRADAFFNFLGGGDGYHLYGKGGKWFVMYQQFLTLTIDTRELIDFVKSKIPK
>NC_022886.1|WP_023592567.1|1447706_1448369_-|outer-membrane-protein
MNKTTVKILMGMALLSSLQAAEAELDEKSKKPKFADRNTFYLGVGYQLSAINTSFSTESVDKSYFMTGNGFGVVLGGKFVAKTQAVEHVGFRYGLFYDQTFSSHKSYISTYGLEFSGLWDAFNSPKMFLGLEFGLGIAGATYMPGGAMHGVIAQNLGKENSLFQLLVKVGFRLGFLHNEITFGLKFPFIPNKRTEIIDGLSTTTLWHRLPVAYFNYIYNF
>NC_022886.1|WP_000486466.1|1448648_1449209_+|pyruvate-flavodoxin-oxidoreductase-subunit-gamma
MFQIRWHARAGQGAITGAKGLADVISKTGKEVQAFASYGSAKRGAAMMAYNRVDDEPILNHERFMQPDYVLVIDPGLVFIENIFANEKEDTTYIITSYLNKEELFEKKPELKTRKVFLVDCLKISMETLKRPIPNTPMLGALMKVSGMLEIEAFKEAFKKVLGKKLTQEVIDANMLAIQRAYEEVQ
>NC_022886.1|WP_000656174.1|1449224_1449617_+|4Fe-4S-binding-protein
MKDWNEFEMGAVLFPFEKNAQSEMEKHNDERHYTEQSYFTTSVAHWRVAKPVHNNNICINCFNCWVYCPDAAILSREGKLKGVDYSHCKGCGVCVDVCPTNPKSLWMFEEQIEPATALTQWPQKQEKKKS
>NC_022886.1|WP_000124331.1|1449626_1450850_+|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha
MARSIELQEIEVWDGNTASSNALRQAQIDVIAAYPITPSTPIVQNYGSFKDNGYIDGEFVLVESEHAAMSACVGAAAAGGRVSTATSSQGLALMVEVLYQASGMRLPIVLNLVNRALAAPLNIHGDHSDMYLSRDSGWISLCTCNPQEAYDFTLMAFRIAEHQKVRVPTIVNQDGFLCSHTVQNVRPLSDAVAYQFVGEYQTKHSLLDFDKPVSYGAQAEEEWHYEHKAQLHHAIMSASSVIEEVFNDFAKLTGRQYHLTKTFQLEDAEIAIFALGTTYESAIVAAKEMRKKGIKAGVATIHSLRPFPYERLGQDLKNLKALAILDKSSPAGAMGAMFNEVTSAVYQTQGTKHPVVSNYIYGLGERDMTIAHLCEIFEEINEDALKGTLTHPTQQFVGLHGPKMSFF
>NC_022886.1|WP_000238135.1|1450862_1451807_+|pyruvate-ferredoxin-oxidoreductase-subunit-beta
MVKEVKTLKGFSQSAEKFQGSHLLCPGCGHGIIVREVLNAVDGPIVLGNSTGCLEVCSAVYPHTSWDVPWIHIGFENGSTAISGVEAMYKALTNKGRYQGQKPKFVAFGGDGASYDIGLQFISGCMERGHDMTYICLDNENYANTGGQRSGSTPLGASTSTTPAGSVSFGKKEKKKDIVNIMASHGVPYVAQLSPNKWKDMNKKIKTALDTEGPCFINALSPCTTEWKFESNKTIELADMAVDSLMFPLFEIFNGRELKITYRPRNIIPVRDYLGAQKRFKHLFKKENEHIIEELQKDVNERWEYLQRREEAKV
>NC_022886.1|WP_023592568.1|1451916_1453239_+|adenylosuccinate-lyase
MLERYANEEMKALWNEQTKFETYLEVEKAVVRAWNKLGRIQDSDCEKICSKAAFNLERIKEIEKTTKHDLIAFTTCVAESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKSVKNLYETLKNRALEHKDTLMVGRSHGVFGEPITFGLVLALFADEIKRHLKALDLTMEFISVGAISGAMGNFAHAPLELEELACEFLGLKTANINNQVIQRDRYARLACDLALLASSCEKIAVNIRHLQRSEVYEVEEAFSTGQKGSSAMPHKRNPILSENITGLCRVIRSFITPMLENVALWHERDMSHSSVERFALPDLFITSDFMLSRLNSVIKNLVVYPKNMLKNLALSGGLIFSQRVLLELPKKGLSREYSYSIVQENAMKIWEILQQGAFKNADENLFLNALLNDERLKKYLSEDEIKACFDYSYYTKNVGAIFKRVFG
>NC_022886.1|WP_023592569.1|1453304_1454138_+|outer-membrane-protein
MKRALYLVLGLSYALHADSFKDVLTKGDYTFFNKKVVSPIKRYADRSAFYLGFGYQLGSVQHNYSNLNLFQQFNKSQILFSDGLSPVFKNSYVSNGFGVQVGYKWVGKHEETKWFGFRWGLFYDLSASLYGQKESQFIIISTYGTYMDLLFNAYNGDKFFAGFNLGIAFAGVYDKVSDALLYQALLLDTFGGKVDPNGFQFLVGLGVRLGSKRNQFGFGIKVPTYYFNHYYSMNNISNNSGDVLKVLRFLEYGINSLLYQVDFRRNYSVYFNYTYSF
>NC_022886.1|WP_023592570.1|1454142_1456119_-|excinuclease-ABC-subunit-B
MPLFDLKSPYPPAGDQPQAIETLTKSLKNNNHYQTLVGVTGSGKTYTMANIIAKTNKPALIMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVMLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMHSEIDAIERNHLIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKTTQSMQKAFEITNYRRTKQEEFNKLHNITPKTVTRALEEELKLRDDEIRIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKLRTL
>NC_022886.1|WP_023592571.1|1456188_1456905_-|hypothetical-protein
MNYPNLPNSALEITNQPEVKEITNELLKQLQSALNSNSLFTEQVELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWLTNAGDSLKTKMKEYEGFFSDFNTSMKANEQEVTNILNANTENIKSEIKKLENQLIETTTRLLTSYQIFLNQARDTANNQITENKTQAITNINQAKESATTQINTNKTQAITNINEAKTTANNEITANKTESLEAIKTEKKQATSEIIEAKKRSLSKH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

167846 : 230893

Helicobacter_phage(41.67%)

tRNA,transposase,integrase

attL 214706:214765|attR 226449:228479

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000312853.1\|167846_168608_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	2.7e-32	33.9
WP_023591584.1\|168626_169958_-	MFS transporter	NA	NA	NA	NA
WP_023591585.1\|170269_171526_+	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA
WP_023591586.1\|171537_172779_+	phosphopentomutase	NA	NA	NA	NA
WP_023591587.1\|172775_173477_+	purine-nucleoside phosphorylase	NA	NA	NA	NA
WP_023591588.1\|173949_175851_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_023591589.1\|176312_177620_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	4.5e-51	31.3
WP_023591590.1\|177748_178972_+	sugar MFS transporter	NA	NA	NA	NA
WP_023591591.1\|179241_179793_-	hypothetical protein	NA	NA	NA	NA
WP_023591592.1\|179913_180747_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_023591593.1\|180795_181542_-	amino acid ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.6e-29	35.6
WP_023591594.1\|181543_182215_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_023591595.1\|182217_182871_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_162146320.1\|183050_185144_+	carbon starvation protein A	NA	NA	NA	NA
WP_023591597.1\|185480_186896_-	outer membrane beta-barrel protein HofH	NA	NA	NA	NA
WP_023591598.1\|187203_188841_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_023591599.1\|188904_190065_+	MFS transporter	NA	NA	NA	NA
WP_023591600.1\|190071_191046_-	NAD(P)/FAD-dependent oxidoreductase	A0A2K9L162	Tupanvirus	3.3e-06	22.7
WP_001090949.1\|191071_191263_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA
WP_023591601.1\|191387_191969_+	DedA family protein	NA	NA	NA	NA
WP_000516071.1\|192060_192555_+	flavodoxin	NA	NA	NA	NA
WP_023591602.1\|192607_193030_+	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_023591603.1\|193121_193655_-	Fic family protein	NA	NA	NA	NA
WP_023591604.1\|193681_194455_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_041200995.1\|194468_198173_-	Hop family outer membrane protein HopL	NA	NA	NA	NA
WP_023591606.1\|198195_200280_-	Hop family outer membrane protein HopI	NA	NA	NA	NA
WP_023591607.1\|200387_201449_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA
WP_001105857.1\|201460_201868_-	flagellar assembly protein FliW	NA	NA	NA	NA
WP_023591608.1\|202004_204623_+\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	1.0e-142	39.1
WP_000484802.1\|204638_205985_+	signal recognition particle protein	NA	NA	NA	NA
WP_000216129.1\|206059_206290_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_001208533.1\|206306_206654_+	KH domain-containing protein	NA	NA	NA	NA
WP_023591609.1\|206654_207209_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_023591610.1\|207209_207899_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_023591611.1\|207920_208277_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_023591612.1\|208493_209291_+	NYN domain-containing protein	NA	NA	NA	NA
WP_038419646.1\|211811_212201_+	hypothetical protein	NA	NA	NA	NA
WP_000965788.1\|213670_214141_-	hypothetical protein	NA	NA	NA	NA
WP_023591615.1\|214195_214699_-	type IA DNA topoisomerase	NA	NA	NA	NA
214706:214765	attL	NA	NA	NA	NA
WP_023591540.1\|214758_216018_-\|transposase	transposase	A0A1S5RGV0	Helicobacter_phage	2.6e-237	98.6
WP_023591539.1\|215992_216646_-\|transposase	IS607-like element IS607 family transposase	A0A1S5RGS9	Helicobacter_phage	7.6e-116	98.6
WP_023591616.1\|216941_217334_-	DEAD/DEAH box helicase family protein	M5AAC3	Nitratiruptor_phage	2.3e-19	42.6
WP_080261121.1\|218189_218903_+	hypothetical protein	NA	NA	NA	NA
WP_038420330.1\|218907_219537_-	hypothetical protein	NA	NA	NA	NA
WP_023591620.1\|220122_220605_+	hypothetical protein	NA	NA	NA	NA
WP_000006537.1\|220736_220988_+	hypothetical protein	NA	NA	NA	NA
WP_000009099.1\|220959_221763_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_023591621.1\|222079_223147_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	1.3e-08	26.7
WP_000462384.1\|224493_224703_+	hypothetical protein	NA	NA	NA	NA
WP_041200996.1\|224699_224951_+	hypothetical protein	NA	NA	NA	NA
WP_023591624.1\|225001_225400_+	hypothetical protein	NA	NA	NA	NA
WP_023591540.1\|226501_227761_-\|transposase	transposase	A0A1S5RGV0	Helicobacter_phage	2.6e-237	98.6
WP_023591539.1\|227735_228389_-\|transposase	IS607-like element IS607 family transposase	A0A1S5RGS9	Helicobacter_phage	7.6e-116	98.6
WP_023591629.1\|230419_230893_+\|transposase	IS200/IS605 family transposase	G9CU69	Helicobacter_phage	3.1e-79	94.2
226449:228479	attR	NA	NA	NA	NA

DBSCAN-SWA_2

332396 : 379625

Helicobacter_phage(50.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023591717.1\|332396_333377_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_023591718.1\|333377_335162_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_021306708.1\|335158_336205_+	microcin C ABC transporter permease YejB	NA	NA	NA	NA
WP_038419687.1\|336213_336804_+	SH3 domain-containing protein	NA	NA	NA	NA
WP_023591720.1\|336811_337603_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_023591721.1\|337602_339522_+	VacB/RNase II family 3'-5' exoribonuclease	Q0GXV6	Lactococcus_phage	1.0e-35	30.1
WP_023591722.1\|339527_340550_+	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_023591723.1\|340692_341121_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_023591724.1\|341130_341676_+	single-stranded DNA-binding protein	D7RWG9	Brochothrix_phage	7.0e-14	38.9
WP_000440196.1\|341698_341956_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_023591725.1\|342509_344591_+	Hop family adhesin BabB	NA	NA	NA	NA
WP_000468330.1\|345224_345455_-	YdcH family protein	NA	NA	NA	NA
WP_023591726.1\|345572_348116_+\|tRNA	alanine--tRNA ligase	A0A2K9L1X7	Tupanvirus	6.3e-73	35.3
WP_023591727.1\|348117_348681_+	septum formation inhibitor Maf	NA	NA	NA	NA
WP_000534786.1\|349138_350143_-	formamidase	NA	NA	NA	NA
WP_023591729.1\|351445_351619_-	site-specific DNA-methyltransferase	A0A249XUJ2	Enterococcus_phage	1.4e-05	50.0
WP_023591540.1\|353229_354489_-\|transposase	transposase	A0A1S5RGV0	Helicobacter_phage	2.6e-237	98.6
WP_023591539.1\|354463_355117_-\|transposase	IS607-like element IS607 family transposase	A0A1S5RGS9	Helicobacter_phage	7.6e-116	98.6
WP_023591733.1\|356516_357224_+	hypothetical protein	NA	NA	NA	NA
WP_038419701.1\|357228_357600_+	hypothetical protein	NA	NA	NA	NA
WP_000921941.1\|359343_359625_-	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA
WP_023591735.1\|359617_359932_-	hypothetical protein	NA	NA	NA	NA
WP_038420352.1\|360269_362180_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_023591737.1\|362204_363389_-	hypothetical protein	NA	NA	NA	NA
WP_000394639.1\|363432_363717_-	hypothetical protein	NA	NA	NA	NA
WP_023591738.1\|363797_364454_-	ParA family protein	A2I303	Vibrio_virus	1.9e-05	23.8
WP_023591739.1\|364720_373147_-	DEAD/DEAH box helicase family protein	A0A248SL14	Klebsiella_phage	2.8e-234	34.2
WP_023591540.1\|374067_375327_-\|transposase	transposase	A0A1S5RGV0	Helicobacter_phage	2.6e-237	98.6
WP_023591539.1\|375301_375955_-\|transposase	IS607-like element IS607 family transposase	A0A1S5RGS9	Helicobacter_phage	7.6e-116	98.6
WP_023591742.1\|376374_377037_+	hypothetical protein	NA	NA	NA	NA
WP_023591539.1\|377737_378391_+\|transposase	IS607-like element IS607 family transposase	A0A1S5RGS9	Helicobacter_phage	7.6e-116	98.6
WP_023591540.1\|378365_379625_+\|transposase	transposase	A0A1S5RGV0	Helicobacter_phage	2.6e-237	98.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_022886

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection