CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010979	Pseudomonas putida S13.1.2, complete genome	3 crisprs	DEDDh,DinG,csa3,WYL,cas3,RT,PD-DExK	0	1	10	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010979_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010979_1

566142-566215

Orphan

Consensus_repeat	Method
TCATCACCTTTACGTTAACGTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010979_1

>merge|NZ_CP010979|1|566142-566215|CRISPRCasFinder
TCATCACCTTTACGTTAACGTAAACCTGCATGGGGTCACTGTCAATCCACTCATCACCTTTACGTAAACGTAAA

>NZ_CP010979|1|1|566142-566215|CRISPRCasFinder
TCATCACCTTTACGTTAACGTAAA	CCTGCATGGGGTCACTGTCAATCCAC
TCATCACCTTTACGTAAACGTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010979.1\|WP_019470127.1\|575304_577515_+\|1,4-alpha-glucan-branching-protein-GlgB	unknown	unknown	gnl\|CDD\|235445
NZ_CP010979.1\|WP_019470131.1\|581524_583678_-\|glycogen-debranching-protein-GlgX	unknown	unknown	gnl\|CDD\|131155
NZ_CP010979.1\|WP_019470125.1\|569811_571830_+\|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase	unknown	unknown	gnl\|CDD\|200482
NZ_CP010979.1\|WP_155412661.1\|568420_569389_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274730
NZ_CP010979.1\|WP_019473643.1\|557062_557578_-\|DUF4880-domain-containing-protein	unknown	unknown	gnl\|CDD\|379797
NZ_CP010979.1\|WP_019470129.1\|579154_580231_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|377133
NZ_CP010979.1\|WP_033692800.1\|558412_559120_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224885
NZ_CP010979.1\|WP_019470121.1\|564793_565957_-\|isovaleryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173845
NZ_CP010979.1\|WP_019470119.1\|560398_562351_-\|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha	unknown	unknown	gnl\|CDD\|227111
NZ_CP010979.1\|WP_019470120.1\|562347_563163_-\|gamma-carboxygeranoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|168168
NZ_CP010979.1\|WP_019470126.1\|571986_575304_+\|maltose-alpha-D-glucosyltransferase	unknown	unknown	gnl\|CDD\|274140
NZ_CP010979.1\|WP_019473645.1\|554599_555910_-\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_CP010979.1\|WP_019470122.1\|566278_567961_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236236
NZ_CP010979.1\|WP_016498805.1\|563166_564774_-\|3-methylcrotonyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|178415
NZ_CP010979.1\|WP_155412660.1\|568077_568314_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010979.1\|WP_019473641.1\|558012_558324_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010979.1\|WP_080956771.1\|578083_579037_+\|RHS-repeat-associated-core-domain-containing-protein	unknown	unknown	gnl\|CDD\|274730
NZ_CP010979.1\|WP_019470130.1\|580548_581343_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|226098
NZ_CP010979.1\|WP_019473646.1\|553844_554600_-\|class-II-aldolase/adducin-family-protein	unknown	unknown	gnl\|CDD\|235916
NZ_CP010979.1\|WP_019473644.1\|556065_557043_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656

Protein	Function_ID	Function_description	E-value
NZ_CP010979.1\|WP_019470127.1\|575304_577515_+\|1,4-alpha-glucan-branching-protein-GlgB	gnl\|CDD\|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0
NZ_CP010979.1\|WP_019470131.1\|581524_583678_-\|glycogen-debranching-protein-GlgX	gnl\|CDD\|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP010979.1\|WP_019470125.1\|569811_571830_+\|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase	gnl\|CDD\|200482	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins. GlgE is a (1,4)-a-D-glucan:phosphate a-D-maltosyltransferase, involved in a-glucan biosynthesis in bacteria. It is also an anti-tuberculosis drug target. GlgE isoform I from Streptomyces coelicolor has the same catalytic and very similar kinetic properties to GlgE from Mycobacterium tuberculosis. GlgE from Streptomyces coelicolor forms a homodimer with each subunit comprising five domains (A, B, C, N, and S) and 2 inserts. Domain A is a catalytic alpha-amylase-type domain that along with domain N, which has a beta-sandwich fold and forms the core of the dimer interface, binds cyclodextrins. Domain A, B, and the 2 inserts define a well conserved donor pocket that binds maltose. Cyclodextrins competitively inhibit the binding of maltooligosaccharides to the S. coelicolor enzyme, indicating that the hydrophobic patch overlaps with the acceptor binding site. This is not the case in M. tuberculosis GlgE because cyclodextrins do not inhibit this enzyme, despite acceptor length specificity being conserved. Domain C is hypothesized to help stabilize domain A and could be involved in substrate binding. Domain S is a helix bundle that is inserted within the N domain and it plays a role in the dimer interface and interacts directly with domain B. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP010979.1\|WP_155412661.1\|568420_569389_-\|hypothetical-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	7.59744e-20
NZ_CP010979.1\|WP_019473643.1\|557062_557578_-\|DUF4880-domain-containing-protein	gnl\|CDD\|379797	pfam16220, DUF4880, Domain of unknown function (DUF4880). This domain can be found on the N-terminal of uncharacterized proteins from various Rhodopseudomonas and Pseudomonas species, often, but not always followed by the ron siderophore sensor protein family (FecR, PF04773). The function of this domain is unknown.	4.72589e-06
NZ_CP010979.1\|WP_019470129.1\|579154_580231_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	2.16621e-29
NZ_CP010979.1\|WP_033692800.1\|558412_559120_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	3.64101e-16
NZ_CP010979.1\|WP_019470121.1\|564793_565957_-\|isovaleryl-CoA-dehydrogenase	gnl\|CDD\|173845	cd01156, IVD, Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.	0
NZ_CP010979.1\|WP_019470120.1\|562347_563163_-\|gamma-carboxygeranoyl-CoA-hydratase	gnl\|CDD\|168168	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated.	0
NZ_CP010979.1\|WP_019470126.1\|571986_575304_+\|maltose-alpha-D-glucosyltransferase	gnl\|CDD\|274140	TIGR02456, Trehalose_synthase, trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (). [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP010979.1\|WP_019473645.1\|554599_555910_-\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.53678e-151
NZ_CP010979.1\|WP_019470122.1\|566278_567961_+\|AMP-binding-protein	gnl\|CDD\|236236	PRK08315, PRK08315, AMP-binding domain protein; Validated.	0
NZ_CP010979.1\|WP_016498805.1\|563166_564774_-\|3-methylcrotonyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|178415	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.	0
NZ_CP010979.1\|WP_019470119.1\|560398_562351_-\|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NZ_CP010979.1\|WP_080956771.1\|578083_579037_+\|RHS-repeat-associated-core-domain-containing-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	2.91772e-21
NZ_CP010979.1\|WP_019470130.1\|580548_581343_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	9.81541e-71
NZ_CP010979.1\|WP_019473646.1\|553844_554600_-\|class-II-aldolase/adducin-family-protein	gnl\|CDD\|235916	PRK07044, PRK07044, aldolase II superfamily protein; Provisional.	4.55817e-140
NZ_CP010979.1\|WP_019473644.1\|556065_557043_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	6.95427e-40

>NZ_CP010979.1|WP_019470121.1|564793_565957_-|isovaleryl-CoA-dehydrogenase
MHYPSLNFALGETIDMLRDQVRTFVAAELAPRAAQIDHDNLFPADMWRKFGDMGLLGITVSEEYGGAGLGYLAHVVSMEEISRGSASVALSYGAHSNLCVNQINRNGTHEQKLKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEQRGDHYVLNGSKTWITNGPDANTYVIYAKTDLDKGAHGITAFIVERDWKGFSRSNKFDKLGMRGSNTCELFFDDVEVPAENILGQLNGGVRVLMSGLDYERVVLSGGPTGIMQSCMDLVVPYIHDRKQFGQSIGEFQLIQGKIADMYTQLNASRAYLYAVAQACDRGETTRKDAAGVILYTAERATQMALEAIQILGGNGYINEFPAGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETR
>NZ_CP010979.1|WP_016498805.1|563166_564774_-|3-methylcrotonyl-CoA-carboxylase-subunit-beta
MATLHTQINPRSAEFAGNSAAMLEQVQALRGLLAQVAQGGGPKAQERHTSRGKLLPRERIDRLLDPGSPFLEIGQLAAHEVYGEDVPAAGVIAGIGRVEGVECMIVANDATVKGGSYYPLTVKKHLRAQTIAQQNRLPCIYLVDSGGANLPRQDEVFPDREHFGRIFFNQANMSAQGIPQIAVVMGSCTAGGAYVPAMADEAIMVRQQATIFLAGPPLVKAATGEVVSAEDLGGADVHCRTSGVADHYADNDEHALAIARRSVANLNWHKLGKLQRLAPVAPLYAADELYGVVPADAKQPFDVREVIARLVDGSVFDEFKALFGTTLVCGFAHLHGYPVAILANNGILFAEAAQKGAHFIELACQRGIPLLFLQNITGFMVGKKYEEGGIAKHGAKLVTAVACAQVPKFTVIIGGSFGAGNYGMCGRAYDPRFLWMWPNARIGVMGAEQAAGVLAQVKREQSERSGQPFSAEDEARLKQPILDQYEHQGHPYYSSARLWDDGVIDPAQTRDVLGLALSAALNAPIEQSRFGIFRM
>NZ_CP010979.1|WP_019470120.1|562347_563163_-|gamma-carboxygeranoyl-CoA-hydratase
MSDFSTLEVIRDPRGFATLWLSREDKNNAFNAQMIRELIVAIDRLAEDASLRFVLLRGRGRHFSAGADLAWMQQSAQLDFNTNLDDAHELGELMYALHRLKAPTLAVVQGAAFGGALGLISCCDMAIGTEDAQLCLSEVRIGLAPAVISPFVVKAIGERAARRYALTAERFSGIRARELGLLAEVYPASELDAQVEAWVNNLLQNSPQALRATKDLLREVDDGELSPALRRYCENTIARIRVSAEGQEGLRAFLEKRRPAWQTEDKKEPRP
>NZ_CP010979.1|WP_019470119.1|560398_562351_-|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha
MSRPALTTLLVANRGEIACRIMRTAKAMGLTTVAVHSATDRDARHSREADIRVDLGGTKAAESYLLVDKLLAAAKASGAQAIHPGYGFLSENAGFARAIEQAGLIFLGPPASAIDAMGSKSAAKALMDAAGVPLVPGYHGEAQDLDTFRAAAERIGYPVLLKASAGGGGKGMKVVEEESQLADALASAQREAQSSFGDARMLVEKYVLKPRHVEIQVFADQRGNCLYLNERDCSIQRRHQKVVEEAPAPGLSPELRRAMGEAAVRAAQAIGYVGAGTVEFLLDARGEFFFMEMNTRLQVEHPVTEAITGLDLVAWQIRVACGEQLPITQEQVPLIGHAIEVRLYAEDPANEFLPATGTLALYRESAPGEGRRVDSGVSEGDVVSPFYDPMLGKLIAWGENREQARLRLLAMLDEFAIGGVKTNIAFLRRILAHPAFAAAELDTGFIPRHQDVLLPAPHALPAGFWEAAAEAWQQGQPGHQRDDDRSSPWGARNGLRLGLPARSSLHLVSAGQDQAVALERSAASTWQLAGEQLVHDQSGVRRQHLAIRRGGTLYLHWDGEMHAIQAFDPIAEAEASHGHQGGLGAPMNGSIVRVLVEPGQVVEAGTALVVLEAMKMEHSIRAPQGGTVKALFCQEGDMVSEGTVLVELAE
>NZ_CP010979.1|WP_033692800.1|558412_559120_+|helix-turn-helix-domain-containing-protein
MFIERLKAVRIVPAMNMDKWIALVRDRMEELGLTQEQLAERVGVSQGSVGHWVNKRRQPKIESMNRTFVEIGMPHYNVSLQLRIQGQVGEERGVYQMDDADDDLDLMQYIVCFRYPVLAWSELGVEEREEPGVFEQTDYLAQGKAFWLTVENDAMSAVSGRSVPQGMRMLVDPGVEAEAGRLVIARQPGKPAIFRELAEEGGQRYLKALNGNYPALLCEEGCEILGVVVRVHGAF
>NZ_CP010979.1|WP_019473641.1|558012_558324_-|hypothetical-protein
MKPPKNDETDLDSEAARRALDYYLNPKPQRPTLDNKIWTLHDSVTGDQAQEHAIALLRCAAATAQETASHQHGSQRELTYALMHMMDMARALLEHKRAADPDF
>NZ_CP010979.1|WP_019473643.1|557062_557578_-|DUF4880-domain-containing-protein
MTRLLLPLEHPTPVAEHDADHALLHALKRLPRRVQQVFLLNRLDQLDFATIAARLDLPLASIERNMDQALQAGRSRRDVLSSVAGQWYVRLQSPQVTACERIDFRRWLDADTANLHAFHETELRWRSLLAPARQLGHDGWYRQGRAALSLGGCSIAVGLGVAALVVFGLWA
>NZ_CP010979.1|WP_019473644.1|556065_557043_+|LysR-family-transcriptional-regulator
MTPTTTTLARDPEAKRFLNDRLDWNLLRTFLVIGQEGSISRAAARLHLSQPAVSQALRRLEEQLDSALVVRRGPRINLSKAGEEVMQIAAELYGTVSRLGPALDSPAETVTGKIRLLSISRIQSRAYDDFLAQFHSDYPQVELEIDVLRSSDVASGLLQKTASFGLSLCRTPQPRLEQRVLLEQRYAFFCGKRHRLFGRKNLTVADLQGENFVSFTSDQMGGNLSPLTVFRDQQGFTGRIVASSPSLDEILRLVGAGYGIGCLPEHIVAADVQANELWRLPPWEGVIDVNVYLLWNREQKFTQAESIFLERFQQMLMTTDPAERF
>NZ_CP010979.1|WP_019473645.1|554599_555910_-|MHS-family-MFS-transporter
MKSNTPTPRRAAAAAFIGTTIEFYDFYIYAFAAALVLGQLFFPSENPMLSTMAAFGSFAVGFIARPFAGMVFGHLGDRLGRKKMLLVTIVLMGVATTCIGLLPTYAQAGIWAPIGLIFLRLLQGISVGGEWGGAVLMASEHAPKGRKVFFASFAQWGSPAGLLLALIAFRFITAMETEDLMSWGWRIPFLMSGLLMIVGLLIRFGVPESPEFAEVKDSDQTSDNPVREVLRNHWRNIVFAALAVTIGSGGFFFTNTFMITYVTQYQGIAKTTILDCLFVVTILQFLSQPCSAMLAERLGEGRFLTWVAALCMVVPYPMFLLVQTGNVIYMTAGIALAVVMLSALYAVIAGYMAEAFPARVRYSGISIAYQLGSGLTGGLTPMLGTFVAGQFAGQWVPLALFFSVLALMSLAGVLGLSHLRNASARPAALSTSQGIA
>NZ_CP010979.1|WP_019473646.1|553844_554600_-|class-II-aldolase/adducin-family-protein
MSKPYNMSETEWQSRCELAALYRLIAYYRMTDLIDTHITLRVPGPDRHFLINRYGVAFEKMRASDLVLIDLDGNVVDSHFSGGKVNAAGFVIHSAIHEARPDLHCIIHTHTAAGMAVAAQRDGLLPLTQHALKFYGNLAYHTYEGIALSLEERERLVADLGTHKAMILRNHGLLAAGNSVAAAFHEIYFLERACQAQIQAMSAGVALNIPSEEVCRHTAAQFGRDGIDGIIDMAWQAALSLIDAQRSEWCC
>NZ_CP010979.1|WP_019470122.1|566278_567961_+|AMP-binding-protein
MSQPSYTRGRQDQPLLTQTIGQAFDATVARCADGEALVSRHQGLRYSWRQLAEQVEVHARALMALGVNTGDRVGIWSPNCAQWCILQLASAKVGAILVNINPAYRVGELEYVLRQSGCRWLVCADAFKTSDYHAMVQELVPELACATPGELASERLPDLRGVISLAANPPAGFLPWHALAERAGQTSTDACTARQQSLQFDQPVNIQYTSGTTGAPKGATLSHYNILNNGFMVGESLGLTAHDRMVIPVPLYHCFGMVMANLGCITHGSTMIYPNDAFDAELTLRAVAEERASILYGVPTMFIAMLDHPARQGMDLSTLRSGIMAGATCPIEVMRRVIDQMHMAEVQIAYGMTETSPVSLQTGPDDDLELRVTTVGRTQPQLENKLVDADGCIVARGQIGELCTRGYSVMLGYWDNPQATADAIDPAGWMHSGDLAVMDEHGHVRIVGRNKDMIIRGGENIYPRELEEFFYTHPAVADAQVIGIPCSRYGEEIVAWIKLHPGHSATVEELQGWCKARIAHFKVPRHIRFVDEYPMTVTGKVQKYRMREISVAEISAVSAG
>NZ_CP010979.1|WP_155412660.1|568077_568314_-|hypothetical-protein
MDTATRRQREEYERQVIDMLQDAGVVDAGPGTLLAHLDCDKCEFALMQLEARYSVRLRRDYLNIAEVAGELYKALNQR
>NZ_CP010979.1|WP_155412661.1|568420_569389_-|hypothetical-protein
MMNWYFYQGWSCVTSISALRKVSVMQHQRNALAFKTADLDREGLALVAIDSQRTAAWYSGPARTGPLQFTAYGYTAPKNELPVAFKGERYDAGTASYQLGNGHRTYNPALMRFNSADRFSPFDFGGINSYAFVSGNPVNFEDPSGRGIGKFIPHKLEATSNFVTFGKAPATPFSDVIVFSGQTEKSTKNNMTWIWGHGNGQRLGGLNPHKLAKRLYQRNIEFLDGPILLANCYGGASASTNGPGFPEISFAQQFANITGKTVIAFTERLNLKKGALESRPVMHMVLTAEKYLDAGPVTYYPETRPEMDNVSAPSNHSARIRR
>NZ_CP010979.1|WP_019470125.1|569811_571830_+|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase
MSRNEPFESVPMANDHPEQAISLSQALLAPRIVIEDTEPVLEAGTFAAKAISGQPVAVSSKVYSDGHDRLAVMLNWRQAHSRRWHCVPMQSAGNDLWLAEFTPTELGPHLFSIEAWVDPFATYSHDLEKKYNAGVEVKLELEEGRLMLGKGIELCSGAVRDELEALQQRLAELDTDGQVALLLGPDVAHLMSEAGHRSYLARSREFPVDVDRPAAQFASWYELFPRSITDDPQRHGTFNDVHQRLPMIRDMGFDVLYFPPIHPIGTQHRKGRNNALKAEPGDPGSPYAIGSAEGGHDAIHPQLGTREDFRRLVAAAAEHGLEIALDFAIQCSQDHPWLKEHPGWFSWRPDGTIRYAENPPKKYQDIVNVDFYAPDAVPSLWLALRDVVVGWVEEGVKTFRVDNPHTKPLPFWQWLIANVRSQHPDVIFLAEAFTRPAMMARLGKVGYAQSYTYFTWRNQKQELREYFEQLNQPPWSQCYRPNFFVNTPDINPFFLHTSGRAGFLIRAALATMGSGLWGMYSGFELCESAPLPGKEEYLDSEKYQIRPRDFTQPGNIIAEIAQLNRIRRQNRALQTHLGVAFFNCWNDNILYFAKRTPERDNFILVAISLDPHNAQEAHFELPLWELGLDDDADTQGEDLMNGHRWTWHGKTQWMRIEPWHQPFGIWRIEKAR
>NZ_CP010979.1|WP_019470126.1|571986_575304_+|maltose-alpha-D-glucosyltransferase
MAKRSRPAAFIDDPLWYKDAVIYQLHIKSFFDANNDGIGDFAGLISKLDYIAELGVNTLWLLPFYPSPRRDDGYDIAEYKAVHPDYGSMADARRFISEAHKRGLRVITELVINHTSDQHPWFQRARHAKRGSKTRDFYVWSDDDQKYDGTRIIFLDTEKSNWTWDPVAGQYFWHRFYSHQPDLNFDNPLVLKAVIGVMRFWLDLGVDGLRLDAIPYLIERDGTNNENLAETHDVLKAIRAEIDANYPDRMLLAEANQWPEDTRPYFGEGDGDECHMAFHFPLMPRMYMALAMEDRFPITDILRQTPEIPANCQWAIFLRNHDELTLEMVTDRERDYLWNYYAEDRRARINLGIRRRLAPLLQRDRRRIELLTSLLLSMPGTPTLYYGDELGMGDNIYLGDRDGVRTPMQWSPDRNGGFSRADPQRLVLPPIMDPLYGYQTVNVEAQSHDPHSLLNWTRRMLAVRKQQKAFGRGSLRTLTPSNRRILAYIREYTDADGNTEVILCVANVSRAAQAAELELSQYADKVPVEMLGGSAFPPIGQLPFLLTLPPYAFYWFLLASHDRMPSWHIQATEGLPELTTLVLRKRMEELLEAPARDTLQTTILPQYLPKRRWFAGKEGPIDEVRLRYGVRFATATTPVLLSEIEVLSGGVANHYQLPFGLLPEDQINTALPQQLALSRVRRAHQVGLITDAFVLEPFIRAVLHGCQNGLRLPCGSGAGELRFECTGLLAALGLNDESAVRYLSAEQSNSSVVIGDSVVLKLIRRVNPGIHPELEMSAYLTAAGFANISPLLAWVSRVDEQNAPHLLMIAQGYLSNQGDAWAWTQNTLERAIRDQMAPAGGDAEVHTDALEELTGFAALLGQRLGEMHLLLAAPTDDQAFRPRPSDADDSQRWGTQISAELNHALDLLAQHRDALDPDSQALVDDLQQQRDGLAQHIANLAEQAEGGLLMRVHGDLHLGQVLVVQGDAYLIDFEGEPSRPLQERRAKHSPYKDVSGVLRSFDYAAAMILRSASAVDLSGPAQQARQRVARQYLHQSRHAFVEAYGLATAAMPHAWKMAEGERAALELFCLEKAAYEITYEAENRPSWLAVPLHGLHGLISTWGES
>NZ_CP010979.1|WP_019470127.1|575304_577515_+|1,4-alpha-glucan-branching-protein-GlgB
MNATTRENGGLRQRDLDALARAEHADPFAVLGPHGDGKGGVFIRAFLPNALNARVLARDDGRVLAEMVQGAVPGLFTAHLDDAQAYLLQIGWAGGEQVTEDPYSFGPQLGDMDLHLFAEGNHRDLSGRFGAQPIQVDGIDGVCFSVWAPNARRVSVVGDFNNWDGRRHPMRLRHGAGVWELFVPRLGVGETYKFEVLGKDGILPLKADPLARATELPPSTASKVAGELSHAWQDHDWMAQRAQRHAYNAPLSIYELHPGSWRCELDEAGEVGRYYNWRELAERLVPYVQELGFTHIELLPIMEHPFGGSWGYQPLSMFAPTSRYGTAEDFAAFIDACHQGGIGVLLDWVPAHFPTDEHGLARFDGTALYEYDNPLEGYHQDWNTLIYNLGRNEVRGFMMASALHWLKHFHIDGLRVDAVASMLYRDYSRKAGEWVPNRYGGRENLEAIDFIRHLNGVAAVEAPGALIIAEESTAWPGVSQPTQQGGLGFAYKWNMGWMHDTLHYIQNDPVHRTHHHNEMSFGLIYAYSEHFILPISHDEVVHGKHSLIDKMPGDRWQKFANLRAYLTFMWAHPGKKLLFMGCEFGQWREWDHDSELDWYLLQYPEHQGVQRLVGDLNRLYREEPALHEQDCQPQGFQWLIGDDAQNSVYAWLRWSSSGEPVLVVANFTPVPREGYRIGVPFGERWQELLNSDAELYAGSNVGNLGAVASEAVASHGQPLSLALNLPPLGVLIMKPA
>NZ_CP010979.1|WP_080956771.1|578083_579037_+|RHS-repeat-associated-core-domain-containing-protein
MSACRRFFYLQGRLAVSTDPVGNWASRILRHGPIALSCRTEGPQEISTSLYKTDVPGSVLGDQHLHTIAYSPYGHRPVSIQIQLGFNGERKDPVIASYLLGNGKRVYSPMLMRFLSPDDWSPFAQGGLNCYAYCQGDPVNKSDPTGRAPYWRPKISALVKDLKSAESFMNGLRLPENGGLRVKGFIMNSKGTDGTAFTLKLVGDDYAVKTHPEVGVPTDLTGYRHPGTNTFFYVGKTGTPPRRSTPSTGSTASSSLAAVAPPSQITQSELATLSSAAESHRDLLNSGFQYANWTMFNDPDIYVYVGSIRQDAALGNV
>NZ_CP010979.1|WP_019470129.1|579154_580231_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MKSTSKPLRFDSIFYAVSTSLLLATPVETFAYELQGDPTSPGFLQQPAMPQMSLDPVSASGLSIGTLTAFSQTMSARHGQAAPDMIASQWAQFFPTTARNGAQPPDQLEAPSQQLVIGPDLFVRETAAGNVHRAGVFVGHNNLQSTFNGMRPLLGDKQRNAVNLSGESLGVYWSMTHEQGWHLDAVAMGSRIDVLGRGENGQRLDDSGHAMTFSVEGGYPIRLGGNWVIEPQAQLINQQFFPGNQVQEETLQAFDSQPSWSGRVGARLSGRYEVHGMPIEPYVRTNVWYDFSNADEVKLDQVDKISSSRYSTTVELGLGLVARVTPSVALFVSADYSSDVDDNDLNGLIGSLGVRMRW
>NZ_CP010979.1|WP_019470130.1|580548_581343_-|endonuclease/exonuclease/phosphatase-family-protein
MSHEAGSNGFASVNQAPAVKRLRVLTVNTHKGFTAFNRRFILPELREAVRSTQADIVFLQEVLGSHDRHAARYPGWPQTSQYEFLADSMWSDFAYGRNAVYPDGHHGNALLSKYPIIEHRNLDVSITGPERRGLLHCVLDVPGQGPVHAVCVHLSLLESHRQQQLLLLRKLLDSLPADAPVIIAGDFNDWKSRGNRTLGLRRDLHEAFERHHGHLARTYPARLPLLRLDRIYLRNAESHGPRILGHKPWSHLSDHLPLAVEVRL
>NZ_CP010979.1|WP_019470131.1|581524_583678_-|glycogen-debranching-protein-GlgX
MSPRTPKKTRSVAPSRIREGMPFPLGATWDGLGVNFALFSANATKVELCLFDSTGEQELERIELPEYTDEIYHGYLPDAHPGLVYGYRVYGPYEPENGHRFNPNKLLIDPYAKQLVGSLEWSEALFGYTIGHPDGDLSFDERDSAPFVPKCKVIDPAFTWGRDQRVSVPWERTIIYEAHTRGISMRHPAVPEKLRGTFAGLANDELLKHIKELGVSSIELLPIHAFVNDQHLLDKGLNNYWGYNSIAFFAPHPRYLASGKIAEFKEMVAHLHDAGLEVILDVVYNHTAEGNERGPTLSMRGIDNASYYRLMPDDKRFYINDSGTGNTLDLSHPCVLQLVTDSLRYWAGEMHVDGFRFDLATILGRYHEGYNERHGFLVACRQDPMLSQVKLIAEPWDCGPGGYQVGNFAPGWAEWNDRFRDTARAFWKGDEGQLADFAARLTASGDMFNNRGRRPYSSVNFITAHDGFTLRDLVSYNHKHNEDNDENNQDGTDNNLSWNCGAEGPTEDPDINALRMRQMRNYFATLLLAQGTPMIVAGDEFSRTQHGNNNAYCQDSEIGWVNWDLDQEGKELLAFVKRLTRLRLAYPVLRRSRFLVGDYNEAIGVKDVTWLAPDGNEMSVEQWEDPHGRCLGMLIDGRAQVSGIARPGSEATVLLIVNAHHDVVPFKLPAVPEGDYWSCLIDTDRPELRKGQHLQFDSTFEVKGRSMLLMVLQHEEE

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Crispr_ID: NZ_CP010979_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010979_2

3601024-3601102

Orphan

Consensus_repeat	Method
TTCAGGCCTGTGGTGATCCTGTGGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010979_2

>merge|NZ_CP010979|2|3601024-3601102|CRISPRCasFinder
TTCAGGCCTGTGGTGATCCTGTGGGAAGCAATTTCCACAGGGCCCCCACATCTTTCAGGCCTGTGGTGATCCTGTGGGA

>NZ_CP010979|2|2|3601024-3601102|CRISPRCasFinder
TTCAGGCCTGTGGTGATCCTGTGGGA	AGCAATTTCCACAGGGCCCCCACATCT
TTCAGGCCTGTGGTGATCCTGTGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010979.1\|WP_019473839.1\|3611506_3611695_-\|carbon-storage-regulator-CsrA	unknown	unknown	gnl\|CDD\|234973
NZ_CP010979.1\|WP_019473010.1\|3603983_3605948_+\|bifunctional-tRNA-(5-methylaminomethyl-2-thiouridine)(34)-methyltransferase-MnmD/FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC	unknown	unknown	gnl\|CDD\|234978
NZ_CP010979.1\|WP_019473013.1\|3609813_3610998_+\|osmoprotectant-NAGGN-system-M42-family-peptidase	unknown	unknown	gnl\|CDD\|132150
NZ_CP010979.1\|WP_003252624.1\|3612874_3613027_+\|DUF3309-domain-containing-protein	unknown	unknown	gnl\|CDD\|378708
NZ_CP010979.1\|WP_026034554.1\|3590672_3591413_+\|YciK-family-oxidoreductase	unknown	unknown	gnl\|CDD\|236357
NZ_CP010979.1\|WP_019473894.1\|3591537_3592323_-\|TenA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227711
NZ_CP010979.1\|WP_019473009.1\|3602353_3603847_-\|polyphosphate:AMP-phosphotransferase	unknown	unknown	gnl\|CDD\|274736
NZ_CP010979.1\|WP_019473840.1\|3611815_3612625_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235545
NZ_CP010979.1\|WP_019472256.1\|3589953_3590625_+\|N-acetylmuramic-acid-6-phosphate-phosphatase-MupP	unknown	unknown	gnl\|CDD\|237310
NZ_CP010979.1\|WP_019473896.1\|3595077_3596910_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP010979.1\|WP_028614189.1\|3596902_3597535_-\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|226062
NZ_CP010979.1\|WP_019473007.1\|3599566_3600961_+\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|171490
NZ_CP010979.1\|WP_019473004.1\|3597538_3598471_-\|rhodanese-related-sulfurtransferase	unknown	unknown	gnl\|CDD\|223982
NZ_CP010979.1\|WP_019473008.1\|3601136_3602099_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_CP010979.1\|WP_019473011.1\|3606147_3607935_+\|N-acetylglutaminylglutamine-amidotransferase	unknown	unknown	gnl\|CDD\|274430
NZ_CP010979.1\|WP_019473012.1\|3607938_3609684_+\|N-acetylglutaminylglutamine-synthetase	unknown	unknown	gnl\|CDD\|132147
NZ_CP010979.1\|WP_019473006.1\|3598887_3599412_-\|DUF2059-domain-containing-protein	unknown	unknown	gnl\|CDD\|225725
NZ_CP010979.1\|WP_019473005.1\|3598580_3598877_-\|BolA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376601
NZ_CP010979.1\|WP_019473895.1\|3592353_3594810_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|182070
NZ_CP010979.1\|WP_019473838.1\|3611164_3611392_+\|YheU-family-protein	unknown	unknown	gnl\|CDD\|166901

Protein	Function_ID	Function_description	E-value
NZ_CP010979.1\|WP_019473839.1\|3611506_3611695_-\|carbon-storage-regulator-CsrA	gnl\|CDD\|234973	PRK01712, PRK01712, carbon storage regulator CsrA.	8.34112e-17
NZ_CP010979.1\|WP_019473010.1\|3603983_3605948_+\|bifunctional-tRNA-(5-methylaminomethyl-2-thiouridine)(34)-methyltransferase-MnmD/FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC	gnl\|CDD\|234978	PRK01747, mnmC, bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC.	0
NZ_CP010979.1\|WP_019473013.1\|3609813_3610998_+\|osmoprotectant-NAGGN-system-M42-family-peptidase	gnl\|CDD\|132150	TIGR03106, trio_M42_hydro, hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.	0
NZ_CP010979.1\|WP_003252624.1\|3612874_3613027_+\|DUF3309-domain-containing-protein	gnl\|CDD\|378708	pfam11752, DUF3309, Protein of unknown function (DUF3309). This family is conserved in bacteria but its function is not known.	7.6494e-06
NZ_CP010979.1\|WP_026034554.1\|3590672_3591413_+\|YciK-family-oxidoreductase	gnl\|CDD\|236357	PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional.	4.6285e-168
NZ_CP010979.1\|WP_019473894.1\|3591537_3592323_-\|TenA-family-transcriptional-regulator	gnl\|CDD\|227711	COG5424, COG5424, Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism].	7.71046e-62
NZ_CP010979.1\|WP_019473009.1\|3602353_3603847_-\|polyphosphate:AMP-phosphotransferase	gnl\|CDD\|274736	TIGR03708, poly_P_AMP_trns, polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP). [Central intermediary metabolism, Phosphorus compounds].	0
NZ_CP010979.1\|WP_019473840.1\|3611815_3612625_-\|SDR-family-oxidoreductase	gnl\|CDD\|235545	PRK05650, PRK05650, SDR family oxidoreductase.	0
NZ_CP010979.1\|WP_019472256.1\|3589953_3590625_+\|N-acetylmuramic-acid-6-phosphate-phosphatase-MupP	gnl\|CDD\|237310	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP.	4.08563e-100
NZ_CP010979.1\|WP_019473896.1\|3595077_3596910_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	8.75733e-139
NZ_CP010979.1\|WP_028614189.1\|3596902_3597535_-\|DsbA-family-protein	gnl\|CDD\|226062	COG3531, COG3531, Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones].	3.62115e-64
NZ_CP010979.1\|WP_019473007.1\|3599566_3600961_+\|class-II-fumarate-hydratase	gnl\|CDD\|171490	PRK12425, PRK12425, class II fumarate hydratase.	0
NZ_CP010979.1\|WP_019473004.1\|3597538_3598471_-\|rhodanese-related-sulfurtransferase	gnl\|CDD\|223982	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only].	8.26314e-172
NZ_CP010979.1\|WP_019473008.1\|3601136_3602099_-\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	5.44848e-13
NZ_CP010979.1\|WP_019473011.1\|3606147_3607935_+\|N-acetylglutaminylglutamine-amidotransferase	gnl\|CDD\|274430	TIGR03104, trio_amidotrans, asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.	0
NZ_CP010979.1\|WP_019473012.1\|3607938_3609684_+\|N-acetylglutaminylglutamine-synthetase	gnl\|CDD\|132147	TIGR03103, trio_acet_GNAT, GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.	0
NZ_CP010979.1\|WP_019473006.1\|3598887_3599412_-\|DUF2059-domain-containing-protein	gnl\|CDD\|225725	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown].	5.13624e-24
NZ_CP010979.1\|WP_019473005.1\|3598580_3598877_-\|BolA-family-transcriptional-regulator	gnl\|CDD\|376601	pfam01722, BolA, BolA-like protein. This family consist of the morphoprotein BolA from E. coli and its various homologs. In E. coli over expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase. BolA is also induced by stress during early stages of growth and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5.	3.02217e-29
NZ_CP010979.1\|WP_019473895.1\|3592353_3594810_-\|EAL-domain-containing-protein	gnl\|CDD\|182070	PRK09776, PRK09776, putative diguanylate cyclase; Provisional.	2.33753e-161
NZ_CP010979.1\|WP_019473838.1\|3611164_3611392_+\|YheU-family-protein	gnl\|CDD\|166901	PRK00304, PRK00304, hypothetical protein; Provisional.	3.10578e-42

>NZ_CP010979.1|WP_019473007.1|3599566_3600961_+|class-II-fumarate-hydratase
MSRIETDSLGPVEVPEGAYWGAQTQRSLINFAIGKERMPLAVLHALALIKKAAARVNDRNGDLPADIARLIEQAADEVLDGKHDDQFPLVVWQTGSGTQSNMNVNEVIAGRANELAGKGRGGKAPVHPNDHVNRSQSSNDCFPTAMHMAAAQAVHEQLLPAIVELSSGLAELSARHQKLVKTGRTHMMDATPITFGQEVSAFVAQLDYAQRAIRATLPAVCELAQGGTAVGTGLNAPHGFAEAIAAELAALSGLPFVTAPNKFAALAGHEPLTSLAGALKTLAVALMKIANDLRLLGSGPRAGLAEVRLPANEPGSSIMPGKVNPTQCEALSMLACQVLGNDAAIGFAASQGHLQLNVFKPVIIHNLLQSIELLADGCRNFQLHCVAGIEPDAEQMAAHLERGLMLVTALNPHIGYDKAAEIAKKAYSEGKTLREAALELKYLTNEQFDQWVRPENMLAPGGKG
>NZ_CP010979.1|WP_019473006.1|3598887_3599412_-|DUF2059-domain-containing-protein
MTRLRVLCAAVALACASGQVLAATASHNAAAEKFLTLANADKLGTPVYMQVQQMFAQRFAQTKAPAAKQPVLASYQAKANAALDSAIGWNKLKPKMVDLYTQTFTEQELKDLVKFYESPLGKKVLREMPKVTQQSAQLTQQSLEPAVPVVNKLLEDMTKELDPNAGKAAVPAKK
>NZ_CP010979.1|WP_019473005.1|3598580_3598877_-|BolA-family-transcriptional-regulator
MTMQQRIEQQLGALAPQHLQVLDESHMHSRGQETHYKAVIVSEQFAGLNSVKRHQKVYATMGELMGQIHALAIHTYTADEWAKVGAAPASPVCAGGGH
>NZ_CP010979.1|WP_019473004.1|3597538_3598471_-|rhodanese-related-sulfurtransferase
MSQPIVVAALYKFVTLQDYVELREPLLKAMLDNDVKGTLLLAHEGINGTVSATREGIDGLLAWLRNDPRLADVDHKESYCDEQPFYRTKVKLKKEIVTLGVPGVDPNQAVGTYVEPKDWNALISDPEVLLIDTRNDYEVAIGTFKGAMDPKTETFREFPAYIKANFDPSKHKKVAMFCTGGIRCEKASSYMLGEGFEAVYHLKGGVLKYFEEVPQEESLWDGDCFVFDNRVTVRHDLSEGEYDQCHACRHPINAEERASEHYSPGVSCPHCWDTLSEKTRRSAIDRQKQIELAKARNLPHPIGYNYKAEA
>NZ_CP010979.1|WP_028614189.1|3596902_3597535_-|DsbA-family-protein
MSARLIYVMDPMCSWCWGFAPVAAALIAQAREAGVATRVVPGGLRTGGSALDSSTRKYILEHWQAVAEATGQPFRFEGAMPDGFVYDTEPACRALVTARELDAERVWPLLALIQRSFYEQGVDVTTAPQLVELASQCGFDRAVFAETFARADTRAATAADFSWAQDLGIAGFPTLLAERNGQLALLTNGYQPLERLQPLLGRWLQQAVCA
>NZ_CP010979.1|WP_019473896.1|3595077_3596910_-|ABC-transporter-ATP-binding-protein
MLDVPGSPDPVPGKPHTAGDRLSWAEIRRLALHHKKNLWSANLIAVLAACCSVPIPLLLPLLVDEVLLGHGDAALKWMNHLLPSNWQVAAGYIGLMLALTLCLRLAALAFNVIQAKLFAGLAKDIVYRLRIRLIERLKRISLKEYESLGSGTVTTHLVTDLDTLDKFVGETLSRFLVAMLTLTGTAAILIWMHWQLALLILLFNPLVIYFTVQLGKRVKHLKKLENDSTARFTQALTETLDAIQEIRASNRQGYFLGRLGLRAREVRDYAVDSQWKSDASGRASGLLFQFGIDIFRAAAMLTVLFSDLSIGQMLAVFSYLWFMIGPVEQLLNLQYAYYAAGGALSRLNELLARDDEPQYPAASDPFAGRETVGIEVRDLRFAYADEPVLENLDLSIAPGEKVAIVGASGGGKSTLVQLLLGLYSAQAGTIRFGGASLQEIGLETLRENVAVVLQHPSLFNDTVRANLAMGRDCSDEACWQALHIAQLDATIAALPQGLDSVVGRSGVRLSGGQRQRLAIARMVLAEPKVVILDEATSALDAATEYNLHQALARFLSGRTTLIIAHRLSAVKQADRVLVFDGGHVAEDGDHQQLIAEGGLYAKLYGHLQQS
>NZ_CP010979.1|WP_019473895.1|3592353_3594810_-|EAL-domain-containing-protein
MKGHRTLEAPKLLGITWPFIAVVVFQVALGSLSLYTLSAVRAYVAGESLWSKAQKDAIYYLNLYADTRDDSTYQRYRQAITVPQGDHQLREVLDQPSPNLDAARQAVLQGGNHPDDVERIIWFYRNFRNISYMQTAIDYWDIGDGYLAKLDVLAGEMRHSFASGPVDAQAVNAWKARIVTINEGVTPAAKAFSDALGEGSRMLLRVLLITNLLTAMFLISIAWRRSSKLLAQRQAFASALQEEKERAQTTLQAIGDAVITTDVEGCIGYMNPAAEQLTHWQSGQAQGLPLSALFSLVDEQAEEDGRSLVEQVLSGSLKGGAEHARLIQRLDGSTVSINLVGSPIVSDGQLSGIVLVLHDMTQERQYIANLSWQATHDALTGLANRREFEYRLEQALNGLARQAGRHSLMFLDLDQFKLVNDTCGHAAGDELLRHICAVLQSGLREGDTLARLGGDEFGVLLESCPPDQAERIAEQLRQMVQSLHFVWKGRPFVTTVSVGLVHIAQAPGTLETSLRAADMACYMAKEKGRNRVQVYHADDSELSMRFGEMAWIQRLHVALEENRFCLYAQEIAPLKAFEGPGHIEILLRLYDESGRTILPSSFIPAAERYGLMTALDRWVVRNVFQVVRQCLDEGREGPLSICAINLSGSSIGDDKFLEYLQRLFVEYAIPPRMICFEITETSAIANLGSAIRFINELKGLGCRFSLDDFCAGMSSFAYLKHLPVDYLKIDGSFVKDMLDDPINRAMVEVINHIGHVMGKRTIAEFVETPLIEQALQEIGVDYAQGYLIERPQVFTCDSLQRQRIAARPLLQRAPGTFR
>NZ_CP010979.1|WP_019473894.1|3591537_3592323_-|TenA-family-transcriptional-regulator
MIDAFVRIGPLMDPASYPQWAQQLIEDCRESKRRVVEHEFYARLRDGQLKQSTIRQYLIGGWPVVEQFSLYMAHNLTKTRYGRHQGEDMARRWLMRNIRVELNHADYWVNWCQAHGLHLHELQAQEVPPELNGLNDWCWRVCATENLAISMAATNYAIEGATGEWSAVVCSTDTYAQGFPEDQRKRAMKWLKMHAQYDDAHPWEALEIICTLAGENPSLGLRTELRRAICKSYDCMYLFLERCMQLEGRQQGRLRPALAAG
>NZ_CP010979.1|WP_026034554.1|3590672_3591413_+|YciK-family-oxidoreductase
MFDYTARPDLLQGRVILVTGAGRGIGAAAAKAYAALGATVLLLGKTEANLNEVYDQIEAAGHPQPVVIPFNLETALPHQYDELAVMIEDQFGRLDGLLNNASIIGPRTPLEQLSGDNFMRVMHINVDATFMLTSTLLPLLKLSEDASVVFTSSSVGRKGRAYWGAYGVSKFATEGLMQTLADELEGVAPVRSNSINPGATRTAMRAQAYPSENPQNNPLPEEIMPVYLYLMGPDSKEVNGQAFNAQ
>NZ_CP010979.1|WP_019472256.1|3589953_3590625_+|N-acetylmuramic-acid-6-phosphate-phosphatase-MupP
MRLRAVLFDMDGTLLDTAPDFIAICQAMLAERGLPAIDDNLIRGVISGGARTMVATTFAMDPEAEGFEALRLEFLERYQRDCAVHSKLFDGMAELLADIEKGNLLWGVVTNKPVRFAEPIMQRLGLAERSALLICPDHVKNSKPDPEPLILACTTLGLDPATVLFVGDDLRDIESGRDAGTRTAAVRYGYIHPEDNPNNWGADVVVDHPLELRKVIDSALCGC
>NZ_CP010979.1|WP_019473008.1|3601136_3602099_-|DMT-family-transporter
MHTTSGRWSYGLFLALLTALLWGILPIKLKQVLQVVDPITVTWYRLLVSGGLLFAWLAAKRRLPSFTRLAPRGKGLVVVAVLGLMGNYVLYLIGLNLLSPGTAQLVVQVGPVLLLVASVFVFRERFSLGQGVGLLILLAGFGLFFNQRLEELLTSLGTYTTGVLTILLATSIWVFYALSQKQLLTVWNSQQVMMVIYLGCAALLTPWVHPLEALQLSPVQGWLLLACCLNTLVAYGAFAEALAHWEASRVSATLALTPLVTFVAVALAALVWPEYVHAEDINALGYIGAVTVVLGSALVALGPSLVASWRARRARLAQVH
>NZ_CP010979.1|WP_019473009.1|3602353_3603847_-|polyphosphate:AMP-phosphotransferase
MFESAEIGHSIDKEAYDAEVPALREALLEAQYELKQQARFPVIVLINGIEGAGKGETVKLLNEWMDPRMIDVLTFDQQTDEELARPPAWRYWRALPPKGRMGVFFGNWYSQMLQGRVHGEFKDAVLDQAITGAERLEQMLCDEGALIIKFWFHLSKKQMKARLKSLKDDPLHSWKISPLDWQQSQTYDRFVRFGERVLRRTSRDYAPWHIVEGVDPNYRSLAVGRILLDSLQAALANNPKGKHQGNVAPLGRSIDQRSLLGALDMTLRLDKADYQEQLVTEQARLAGLLRDKRMRRHALVAVFEGNDAAGKGSAIRRVAAALDPRQYRIVPIAAPTEEERAQPYLWRFWRHIPARGKFTIFDRSWYGRVLVERVEGFCSPADWMRAYSEINDFEEQLVNAGVVVVKFWLAIDQQTQLERFQEREQIPFKRYKITEDDWRNRDKWDDYVQAVGDMVDRTSSEIAPWTLVEANDKRWARVKVLRTINQALEAAFAKHKK
>NZ_CP010979.1|WP_019473010.1|3603983_3605948_+|bifunctional-tRNA-(5-methylaminomethyl-2-thiouridine)(34)-methyltransferase-MnmD/FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC
MSTLLQHAQIDWDDQGRPHSRQYDDVYFAVNEGIEETKHVFLGQTRLAERFANLAPHSCRVIGETGFGTGMNFFCAWQLFDQHAHSDARLHFVSVEKYPLGHADMARAVRLWPELAAYTEPLLAQYVAVHPGFQQFTFADGRVTLTLLIGDVLEQLPQLDAQIDVWFLDGFAPAKNPDMWTPELFAQLARLSHPGTVLGTFTTTGWVRRSLVEAGFAMKKVPGIGKKWEVMSGAYVGPLPSPGAPWYARPAVTQGPREALVIGAGLAGSTTAASLARRGWQVTVLERHHAPAQEASGNPQGVLYLKLSAHGTALSQMILSGFGYTRRQLERLQRGRDWDACGVLQLAFDSKEAERQGKLAAAFDHNLLHALERTEAEAVAGVALPAGGLFYPEGGWVHPPALCQQQLQHPGIRLVTHQEVLELRKVDQQWQAWAGDRLVASAPVVILAGAAEVKRFEPCAQLPLKRIRGQITRLPATASSRALRTVVCAEGYVAPPRGDEHTLGASFDFHSEDLAPTAAEHKGNLALLDEISLDLAQRLGTAGLAPEQLQGRAAFRCTSPDYLPIVGPVADVQAFAEAYAVLSRDARQVPDVACPWLDGLYVNSGHGSRGLITAPLSGELVAAWVCGEPLPLPRAVAEACHPNRFALRKLIRGK
>NZ_CP010979.1|WP_019473011.1|3606147_3607935_+|N-acetylglutaminylglutamine-amidotransferase
MCGLAGELRFTPIDQAPRPADLAAVERITHHLAPRGPDAWGFHSQGPIALGHRRLKIMDLSDGSAQPMVDNTLGLSLAFNGAIYNFPELRQELQDLGYSFWSDGDTEVLLKGYHAWGAALLPKLNGMFALAIWERDNQRLFLARDRLGVKPLYLSRNGERLRFASTLPALLKGGDIDPMLDPVALNHYLNFHAVVPAPRTLLANVQKLEPGTWMRIDRHGEVERQTWWQLKYGANPDERELDLEGWTTRVLDATRDAVAIRQRAAVDVGVLLSGGVDSSLLVGLLREAGVDDLSTFSIGFEDAGGERGDEFQYSDLIAKHYGTRHHQLRIAEHEIIDQLPAAFRAMSEPMVSHDCIAFYLLSREVAKHCKGVQSGQGADELFAGYHWYPQVDGAEDAFAAYRDAFFDRSHAEYRDTVQAPWLLETDAAGEFVREHFARPGARDAVDKALRLDSTVMLVDDPVKRVDNMTMAWGLEARTPFLDYRLVELSARIPARFKLPDGGKQVLKQAARRVIPHEVIDRKKGYFPVPGLKHLEGATLGWVRELLTDPSQDRGLFNPAMLDRLLSNPHGQLTPLRGSKLWQLAALNLWLSEQGI
>NZ_CP010979.1|WP_019473012.1|3607938_3609684_+|N-acetylglutaminylglutamine-synthetase
MKPHEIAYGQRLLRGQPPSYERLQARLAGDGSQPHDQPRAVHCGWGRLLIGHTYPDPASLAEDLLDERPGERDIALYVAAPQQLLAQAPQQLFLDPSDTLRLWFTDYRPAQRVFRGFRVRRAQNPADWQAINTLYQARGMLPVDAELLTPRHLGGPVYWLAEDEDSGAVIGSVMGLNHAKAFDDPEHGSSLWCLAVDPHCTRPGVGEVLVRHLIEHFMSRGLAYLDLSVLHDNRQAKRLYEKLGFRNLPTFAVKRKNGINEQLFLGPGPQADLNPYARIIVDEARRRGIEVQVDDAAGGLFTLSLGGRRIRCRESLSDLTSAVTMTLCQDKRLTQHALGNAGLQVPAQQLAGNADDNLAFLDEHGAVVVKPVDGEQGQGVAVNLTCIDDITRAVAHARQFDSRVLLESFHAGLDLRIVVIGYDVVAAAVRHPAQVLGDGKHSVRQLIEAQSRRRQAATGGESRIPLDDETERTLRAAGFGYDDILPAGQRLAVRRTANLHTGGTLEDVTERLHPVLADAAVRAARALEIPVVGLDFMVRDAGQPEYVIIEANERAGLANHEPQPTAERFIDLLFPHSRPLA
>NZ_CP010979.1|WP_019473013.1|3609813_3610998_+|osmoprotectant-NAGGN-system-M42-family-peptidase
MSDRHPEPDLDYLKRVLLEMLAIPSPTGFTDTIVRYVAERLDELGIPFELTRRGTIRATLKGRQTSPDRAVSAHLDTIGASVRQLQDNGRLALAPVGCWSSRFAEGSRVSVFTDTGVVRGSVLPLMASGHAFNTAIDQMPVSWDHVELRLDAYCATRADCEALGVSIGDFVAFDPLPEFTESGHISARHLDDKAGVAALLAALKAVVESGRQPLIDCHPLFTITEETGSGAAGALPWDVSEFVGIDIAPVAPGQASSEHAVSVAMQDSSGPYDYHLSRHLLKLAGDHDLPVRRDLFRYYFSDAHSAVTAGHDIRTALVAFGCDATHGYERTHIDSLAALSRLLSAYLLSPPVFASDSQPANASLERFSHQLEHDAQMESDTRVPAVDSLVGNKG
>NZ_CP010979.1|WP_019473838.1|3611164_3611392_+|YheU-family-protein
MLIPYDQLQAETLTLLIEDFVTRDGTDNGDDTPLETRVLRVRQALAKGQAFILFDPESQQCQLLPKHDVPRELLD
>NZ_CP010979.1|WP_019473839.1|3611506_3611695_-|carbon-storage-regulator-CsrA
MLVIGREVGEIIVIGDDIRIMVVQSRDGVVRFGVEAPREVTVHRAEVYKRIKEAEQGKGRRA
>NZ_CP010979.1|WP_019473840.1|3611815_3612625_-|SDR-family-oxidoreductase
MQNRIMITGAGSGLGREIALRWAHEGWRLALADVNEAALRETLELARAAGGDGFVQRCDVRDYSQLTALAQACTEQLGGIDVIVNNAGVASGGFFAELSLEDWDWQLAVNLMGVVKGCKAFLPLLERSKGRIINIASMAALMQGPGMSNYNVAKAGVLALSESLLVELRQVEVAVHVVCPSFFQTNLLDSFRGPNPAMKAQVGKLLEGSPISAADIAEYMFQQVAAGEFLILPHEAGRQAWALKRQAPERLYDEMAEMAVKMRSKGHSK
>NZ_CP010979.1|WP_003252624.1|3612874_3613027_+|DUF3309-domain-containing-protein
MTTILIIILILLLIGGLPVFPHSRSWGYGPSGIIGVVLVILLVLLLLGMI

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Crispr_ID: NZ_CP010979_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010979_3

4646087-4646169

Orphan

Consensus_repeat	Method
CTACAAGGCGATCGCGGTTCCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010979_3

>merge|NZ_CP010979|3|4646087-4646169|CRISPRCasFinder
CTACAAGGCGATCGCGGTTCCCTTTTTGCCTGGATATCTTGTCGCGACACAAGGCCGCTTCTACAAGGCGATCGCGGTTCCCT

>NZ_CP010979|3|3|4646087-4646169|CRISPRCasFinder
CTACAAGGCGATCGCGGTTCCCT	TTTTGCCTGGATATCTTGTCGCGACACAAGGCCGCTT
CTACAAGGCGATCGCGGTTCCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010979.1\|WP_019470186.1\|4654541_4655042_-\|ATP-dependent-zinc-protease	unknown	unknown	gnl\|CDD\|226553
NZ_CP010979.1\|WP_019470530.1\|4649220_4649889_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|234604
NZ_CP010979.1\|WP_019470184.1\|4652187_4653624_-\|two-component-system-sensor-histidine-kinase-CreC	unknown	unknown	gnl\|CDD\|236846
NZ_CP010979.1\|WP_019470528.1\|4650658_4651987_-\|cell-envelope-integrity-protein-CreD	unknown	unknown	gnl\|CDD\|236960
NZ_CP010979.1\|WP_019470541.1\|4631144_4632587_-\|LPS-kinase	unknown	unknown	gnl\|CDD\|283861
NZ_CP010979.1\|WP_019470532.1\|4644304_4645945_+\|dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|237000
NZ_CP010979.1\|WP_019470534.1\|4638328_4641262_-\|bifunctional-[glutamate--ammonia-ligase]-adenylyl-L-tyrosine-phosphorylase/[glutamate--ammonia-ligase]-adenylyltransferase	unknown	unknown	gnl\|CDD\|236836
NZ_CP010979.1\|WP_019470188.1\|4656355_4657705_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NZ_CP010979.1\|WP_019470538.1\|4634069_4634876_-\|lipopolysaccharide-core-heptose(I)-kinase-RfaP	unknown	unknown	gnl\|CDD\|237915
NZ_CP010979.1\|WP_019470185.1\|4653623_4654304_-\|two-component-system-response-regulator-CreB	unknown	unknown	gnl\|CDD\|236838
NZ_CP010979.1\|WP_019470531.1\|4646364_4649052_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NZ_CP010979.1\|WP_019470187.1\|4655224_4656112_+\|acyltransferase	unknown	unknown	gnl\|CDD\|237584
NZ_CP010979.1\|WP_019470533.1\|4641645_4644291_+\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl\|CDD\|236500
NZ_CP010979.1\|WP_019470540.1\|4632586_4633339_-\|LPS-kinase	unknown	unknown	gnl\|CDD\|283861
NZ_CP010979.1\|WP_019470536.1\|4635996_4637055_-\|lipopolysaccharide-heptosyltransferase-I	unknown	unknown	gnl\|CDD\|236809
NZ_CP010979.1\|WP_019470535.1\|4637055_4638105_-\|lipopolysaccharide-heptosyltransferase-II	unknown	unknown	gnl\|CDD\|274026
NZ_CP010979.1\|WP_019470189.1\|4657903_4658479_-\|DUF2780-domain-containing-protein	unknown	unknown	gnl\|CDD\|378553
NZ_CP010979.1\|WP_019470537.1\|4634872_4635997_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP010979.1\|WP_019470539.1\|4633335_4634070_-\|heptose-kinase-WapP	unknown	unknown	gnl\|CDD\|234975
NZ_CP010979.1\|WP_019470529.1\|4649892_4650516_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198314

Protein	Function_ID	Function_description	E-value
NZ_CP010979.1\|WP_019470186.1\|4654541_4655042_-\|ATP-dependent-zinc-protease	gnl\|CDD\|226553	COG4067, COG4067, Uncharacterized protein conserved in archaea [Posttranslational modification, protein turnover, chaperones].	8.12708e-56
NZ_CP010979.1\|WP_019470530.1\|4649220_4649889_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	gnl\|CDD\|234604	PRK00058, PRK00058, peptide-methionine (S)-S-oxide reductase MsrA.	6.56509e-152
NZ_CP010979.1\|WP_019470184.1\|4652187_4653624_-\|two-component-system-sensor-histidine-kinase-CreC	gnl\|CDD\|236846	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional.	0
NZ_CP010979.1\|WP_019470528.1\|4650658_4651987_-\|cell-envelope-integrity-protein-CreD	gnl\|CDD\|236960	PRK11715, PRK11715, cell envelope integrity protein CreD.	0
NZ_CP010979.1\|WP_019470541.1\|4631144_4632587_-\|LPS-kinase	gnl\|CDD\|283861	pfam06293, Kdo, Lipopolysaccharide kinase (Kdo/WaaP) family. These lipopolysaccharide kinases are related to protein kinases pfam00069. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of S. enterica.	7.75935e-09
NZ_CP010979.1\|WP_019470532.1\|4644304_4645945_+\|dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|237000	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.	0
NZ_CP010979.1\|WP_019470534.1\|4638328_4641262_-\|bifunctional-[glutamate--ammonia-ligase]-adenylyl-L-tyrosine-phosphorylase/[glutamate--ammonia-ligase]-adenylyltransferase	gnl\|CDD\|236836	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase.	0
NZ_CP010979.1\|WP_019470188.1\|4656355_4657705_+\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.04638e-45
NZ_CP010979.1\|WP_019470538.1\|4634069_4634876_-\|lipopolysaccharide-core-heptose(I)-kinase-RfaP	gnl\|CDD\|237915	PRK15123, PRK15123, lipopolysaccharide core heptose(I) kinase RfaP; Provisional.	0
NZ_CP010979.1\|WP_019470185.1\|4653623_4654304_-\|two-component-system-response-regulator-CreB	gnl\|CDD\|236838	PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional.	6.1175e-147
NZ_CP010979.1\|WP_019470531.1\|4646364_4649052_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	4.70285e-118
NZ_CP010979.1\|WP_019470187.1\|4655224_4656112_+\|acyltransferase	gnl\|CDD\|237584	PRK14014, PRK14014, putative acyltransferase; Provisional.	2.02031e-174
NZ_CP010979.1\|WP_019470533.1\|4641645_4644291_+\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0
NZ_CP010979.1\|WP_019470540.1\|4632586_4633339_-\|LPS-kinase	gnl\|CDD\|283861	pfam06293, Kdo, Lipopolysaccharide kinase (Kdo/WaaP) family. These lipopolysaccharide kinases are related to protein kinases pfam00069. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of S. enterica.	1.39454e-51
NZ_CP010979.1\|WP_019470536.1\|4635996_4637055_-\|lipopolysaccharide-heptosyltransferase-I	gnl\|CDD\|236809	PRK10964, PRK10964, lipopolysaccharide heptosyltransferase RfaC.	9.63854e-160
NZ_CP010979.1\|WP_019470535.1\|4637055_4638105_-\|lipopolysaccharide-heptosyltransferase-II	gnl\|CDD\|274026	TIGR02195, ADP-heptose--LPS_heptosyltransferase_2, lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NZ_CP010979.1\|WP_019470189.1\|4657903_4658479_-\|DUF2780-domain-containing-protein	gnl\|CDD\|378553	pfam11075, DUF2780, Protein of unknown function VcgC/VcgE (DUF2780). This is a bacterial family of uncharacterized proteins.	2.3052e-33
NZ_CP010979.1\|WP_019470537.1\|4634872_4635997_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	2.21433e-45
NZ_CP010979.1\|WP_019470539.1\|4633335_4634070_-\|heptose-kinase-WapP	gnl\|CDD\|234975	PRK01723, PRK01723, 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed.	4.74396e-09
NZ_CP010979.1\|WP_019470529.1\|4649892_4650516_+\|glutathione-S-transferase	gnl\|CDD\|198314	cd03205, GST_C_6, C-terminal, alpha helical domain of an unknown subfamily 6 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs, including Pseudomonas fluorescens GST with a known three-dimensional structure. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Though the three-dimensional structure of Pseudomonas fluorescens GST has been determined, there is no information on its functional characterization.	2.8388e-45

>NZ_CP010979.1|WP_019470532.1|4644304_4645945_+|dihydrolipoyllysine-residue-acetyltransferase
MSELIRVPDIGSGEGEIIELFVKVGDRIEADQSLLTLESDKASMEIPAPKAGIVKELKVKLGDRLKEGDELLVLEVEGAAAAAPEAPAAAAAPAAAPAPAAEAAPAAAAAAPAAASVQDIHVPDIGSSGKAKIIEVLVKVGDTVEADQSLITLESDKASMEIPSPAAGVVEEVLCKLEDEVGTGDLIFKLKVAGAAPAAAPAPAAAPAPAKAEAAPAAAPAAAAPAAAPAPAATAPAAGNNAKVHAGPAVRQLAREFGVELGAVAATGPHGRILKEDVQVYVKAMMQKAKEAPAAAGATGGAGIPPIPVVDFSKFGEVEEVALTRLMQVGAANLHRSWLNVPHVTQFDSADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAFLLKELPDFNSSLAPSGKAIIRKKYVHIGFAVDTPDGLLVPVIKNVDQKSLLQLAAEAAALAEKARTKKLSADDMQGACFTISSLGHIGGTGFTPIVNAPEVAILGVSKATMQPVWDGKAFQPKLMLPLSLSYDHRVINGAAAARFTKRLGDVLGDIRTMLL
>NZ_CP010979.1|WP_019470533.1|4641645_4644291_+|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MQDLDPIETQEWLDALESVLDKEGEDRAHYLMTRMGELATRSGSQLPYAITTPYRNTIPVTHEARMPGDLFMERRIRSMVRWNALAMVMRTNLKDSDLGGHISSFASSATLYDIGFNYFFQAPTEEHGGDLIFFQGHASPGVYARAFMEGRINEDQMNNFRQEVDGNGLSSYPHPWLMPDFWQFPTVSMGLGPIQAIYQARFMKYLEARGFIPAGKQKVWCFMGDGECDEPESLGAIALAGREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGVFRGGGWNVNKVVWGRFWDPLLAKDTNGALQRRMDEVIDGEYQNYKAKDGAYVRENFFNTPELKAMVEDLSDDEIWKLNRGGHDPYKVYAAYHQAVNHKEQPTVILAKTIKGYGTGAGEAKNTAHNTKKVDVDSLRHFRDRFDIPVKDADLENLPFFKPEEGSAEAKYLAERRAALGGFVPQRRAKSFSVPTPSLETLKAILDGSGDREISTTMAFVRILAQLVKDKEIGQRIVPIIPDEARTFGMEGMFRQLGIYSSVGQLYEPVDKDQVMFYREDKKGQILEEGINEAGAMSSFIAAGTSYSCHNQPMLPFYIFYSMFGFQRIGDLAWAAGDSRTRGFLIGGTAGRTTLNGEGLQHEDGHSHMMAGTIPNCRTYDPTYGYELAVIIQDGMKKMTEEQQDIFYYITVMNESYQQPAMPAGVEEGIIKGMYLLEEDTREAAHHVQLMGSGTILREVREAAKILREEFNVGADVWSVTSFNELRRDGLAVERANRLKPGQKPQQTYVEQCLNGRKGPVIASTDYMKLFAEQIRQWVPSKEFKVLGTDGYGRSDSRKKLRHFFEVDRHFVVLAALEALADRGEIEPKVVADAIVKFGIDPDKRNPLDC
>NZ_CP010979.1|WP_019470534.1|4638328_4641262_-|bifunctional-[glutamate--ammonia-ligase]-adenylyl-L-tyrosine-phosphorylase/[glutamate--ammonia-ligase]-adenylyltransferase
MRLPLPSDLPATLQPLVARNQQFLNDAVAAHPDLDLNAWAPVHRQQFDQVAAASDFVLGLAQREPAMLFDLLASGELERRYAPGELRGQIAAAAQAAQSDDELARNLRRARNRQQLRIIWRDITRQAELGETCRDLSDLADAAIDEAYQWLYPRHCQQFGTPIGNRSGQPQHMVVLGMGKLGAVELNLSSDIDLIFGFPEGGETEGVKRSLENQEFFTRLGQRLIKALDPVTVDGFVFRVDMRLRPYGSAGALVLSFNALEQYYQDQGRDWERYAMIKARVVAGDQAAGAQLQEMLRPFVYRRYLDFSAIEALRTMKQLIQQEVRRKGMADNIKLGAGGIREVEFIAQAFQLIHGGRDLSLQQRPLLKVLATLEGQGYLPPAVVAELREGYEFLRYTEHAIQAIADRQTQMLPEGETDQARVAYMLGFADWQSFHDQLMYWRGRIDWHFRQVIADPDDEDGEGELVVGGEWSPLWEQAQDEEAAGRQLEEAGFKQPVEALRRLAGLRSSPQLRSMQRIGRERLDAFIPRLLAQAVEHDNPDLVLERVLPLVEAVARRSAYLVLLTENPGALRRLLTLCAASPWIAEQIALYPLLLDELLNEGRLFSPPLAPELASELRERLTRIPEDDLEQQMEALRHFKLAHSLRVAASEISGNLPLMKVSDYLTWLAEAILDQVLALAWRQTVARHGQPKRSDGSLCDPGFIIIGYGKVGGLELGHGSDLDLVFIHDGDPQAETDGTKPIDSAQFFTRLGQRIIHLLTTQTNSGQLYDVDMRLRPSGASGLLVSSLGAFERYQQNEAWTWEHQALVRARVLVGCKQVGTAFEGVRANVLGQARDLEKLRTEVSEMRAKMRGNLGTKATAAGTAANAFEAGVPFDIKQDAGGIVDIEFMVQYAALAWSHDHPAILRWTDNIRILEELEQASLMPASDAVLLREVYKAFRSASHRQALQKEAGVIDATQFADERREVRRIWGELGLT
>NZ_CP010979.1|WP_019470535.1|4637055_4638105_-|lipopolysaccharide-heptosyltransferase-II
MRILIIGPSWVGDMVMAQTLFQCLKQQHPDCVIDVLAPEWSRPILERMPEVRQALSFPLGHGALELATRRRIGKSLAGQYDQAILLPNSLKSALVPFFAGIPKRTGWRGEMRFGLLNDVRKLDKARYPLMIERFMALAYAPGAELPQPYPRPSLQIEAQSRDAARAKFGLELDRPVLALCPGAEFGEAKRWPVEHYAAVADAMIRQGWQVWLFGSKNDHPVGEQIRDRLIPGLREESSNLAGETSLAEAIDLMSCAHAVVSNDSGLMHVAAALNRPLVAVYGSTSPGFTPPLADQVEVVRTGIECSPCFDRTCRFGHYNCLRLLEPGKVIAALHSLSGPDLIDTVAEVD
>NZ_CP010979.1|WP_019470536.1|4635996_4637055_-|lipopolysaccharide-heptosyltransferase-I
MRVLIIKTSSLGDVIHTLPALTDAAHAIPGIRFDWVVEEGFAEIPSWHPAVDQVIPVAIRRWRKNLWQTLKSGEWKAFKQRVRACKYDLVIDAQGLVKSAWLTRYVKAPVAGLDRYSAREGWASRFYDRRLSVATGQHAVERVRQLFAMALAYDLPEGIGDYGLDLERLQLPPAAPYVVFLHGTTWATKHWPEAYWRELAERMGRRKLEVRLPWGNPAEKARAERIAQGLNNCQVLPKLNLAGVARVLAAAKACVAVDTGLGHLAAALDVPTISLFGPTNPGLTGAYGRTQIHQASDWPCAPCLQKKCTYKPSVDDLRRFDLKREWPLCFTRLNPEHVAGRLSALLLAEDVR
>NZ_CP010979.1|WP_019470537.1|4634872_4635997_-|glycosyltransferase-family-4-protein
MQLAFVLYKYFPFGGLQRDFMRIALECQKRGHQIRVYTLIWEGDIPPGFEVLVAPVKAIFNHRRNEKLSAWMAADLAKRPVDRLIGFNKMPGLDVYYAADGCFEDKAQTLRGGLYRRWGRYRHFAEYERAVFGKDAHTEVLMISEVQQPLFIKHYGTPVERFHLLPPGISQDRRAPANAAEIRAEFRKEFNLGDDDLLLVQIGSGFKTKGVDRSLKALAALPSALRKRTKLMVIGQDDPKVFQLQSATLGLGDQVQFLKGRSDIPRFLLGADLLIHPAYNENTGTVLLEALVAGLPVLVSKVCGYAHYIAEADCGLVLDEPFEQEQLNGYLQRMLEDPQARASWSRNGLAFAETADLYSMPQHAADVILGQKTA
>NZ_CP010979.1|WP_019470538.1|4634069_4634876_-|lipopolysaccharide-core-heptose(I)-kinase-RfaP
MKLILAEPFKRLWAGRDAFDAVEALQGEVYRELEGRRTLRTEVAGEGFFVKIHRGIGWGEIFKNLLTAKLPVLGAGQEWRAIQRLHEVGVPTMTAVAYGERGSNPATQHSFIITEELAPTISLEDLSIDWVKQPPEPRLKRALIAEVAKMTGGMHRAGVNHRDCYICHFLLHTDRPVTADDFKLSVIDLHRAQTRATISRRWRDKDLAALYFSALDIGLTQRDKLRFLRGYFQRPLRQVLKDEAPLLAWLERKAQKLYDRKQRYGDAL
>NZ_CP010979.1|WP_019470539.1|4633335_4634070_-|heptose-kinase-WapP
MAGWTLAPGYEHLAVDFGSLDAVFALQGERLTRDPLSEVVRIERDGVNYYVKRYTGAGKHMRRYLGRPRIKAEWQNLKQFAKWGIPTAEVVAWGLERNGLAFGRGAMITRELPNTEDLSALAERNDARLADRAWVDHVSRQLARHTRVMHEHRFAHNDLKWRNLLVDDQGTLFFIDCPTGDFWRGFMWRHRMIKDLACLDKVAKYHLSATQRLRFYLQYRGRDRLNVRDKKRIRQVLGFFEGRE
>NZ_CP010979.1|WP_019470540.1|4632586_4633339_-|LPS-kinase
MTDYLASADLALLKRHGLDDFEALWALQLDAVDEPNTGRGGWSSVFRLELEGKGYYLKRQSDYLTRTLHRPFGEPTFAREFRNISRYQKLHIPALQAVFYGERKQGGKHRAILMTRALDEWADLDSLLAQWPQLGDAERKGILQACGQLARTLHNAGQVHGCFYPKHIFLRQRREGWDAQLIDLEKTRPLLFGMRDRLKDLEPLLRRARAWSEADVRTVLATYLGQPADSTLVDDWLQRLTQRRREKEAR
>NZ_CP010979.1|WP_019470541.1|4631144_4632587_-|LPS-kinase
MRLSELKDAGRSPSLPLSITLADAAGSADLQLLSLLRVLPGQRYVGAGVWRGTPVLAKLLVGGNAARHFQRELQGVKLLAEQGLTTPKLLADGLKEGEGGWLLFEFLDGAQSLADAWAAVENLPVLADEQHLVLGEALTAVAHMHAQGLWQEDLHLDNLLRQGGKLYLIDGAGIKAETPGQQLSRPRVLENLGVFFAQLPKRLEPFIEELLVHYLLANAEHALPLEALQKQVDKVRNWRQKDYLDKAGRECSLFSVQRSLSGLQAIRRSEVQAMQPVLEQADALIDKGHLYKTGGAASVARIEVNGRKLVLKRYNIKNTAHWFKRFWRPSRAWHSWIEGHRLEFLDIATPKPLAVLEQRVMGLRSRAYLVTEYVDGPDLTACFAPYVENGDAPEEQVDALVQVMQQLIRERISHGDFKGHNLFWDNGRWSLIDLDAMCQHATQLSFAPAYARDRARLLRNWPSGSALHQRLDRLLPKLGE
>NZ_CP010979.1|WP_019470531.1|4646364_4649052_+|EAL-domain-containing-protein
MKSQPDAASRVAAEVVTPLPVPSRLGMLRFERLNEATWAMLYLDPACERHFGLLAADLCALVDAPYASLMEPEARYRLHDEIQLQLAQRGYYRVRYSLHTPGMLLRLLETGEAYKQHNRQLLRGYLSVLDDQPDDPGESASDLESRNNRLQLALQLNQRAQQEQLQHLERVRGQQDLILRLARQRYSAENSLLEAAQLITRSACEIYKVDSASIWHLDDQRLDPITAWYRDAQEHRQPEAIDASRFPDYLEALHASRAIDAHNAGHDPRTRALTQSLRPENKAMLDASIRVDGQVVGVLCLEQSGQPRAWQSDEIAFAGELADQFAQVITNHNRRAAASALHLFQRAVEQSASAFLLVNRDGRVEYVNPSFTAITQYSTDEVQGRQLGELPALENLSELLFDSPSSLAMGNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIYEDVTQTKLAQQRIERLAYTDNLTNLGNRPAFIRSLDERFARDGESAMCLLLVDIDNFKRINDSLGHQTGDKLLISLARRLRNSLHSGGILARFASNEFAVLLDDTSLEDGQGVALQLLSTLDKPMFVDNQLINVTASVGLACAPLHGVDPASLMKNAGLALHKAKANGKHQVQVFTEVLNAEASYKLFVENNLRRALTQNELEVFYQPKICLRSGRLLGLEALLRWNHPERGMIRPDQFISVAEETGLIIPIGKWVVRQACRMSKQLREAGLGNLHVAINLSPKQFSDPDLVASISSILKEEALPPHLLELELTEGLLLEASEDTHRQLDELKALGLTLAMDDFGTGYSSLSYLKKFPIDILKIDRSFINEIPDNQDDMEITSAVVAMAHNLKLKVVAEGIETPEQLAFLRRHRCDVGQGYLFDRPIPGRELAERLKRYPRGPLA
>NZ_CP010979.1|WP_019470530.1|4649220_4649889_+|peptide-methionine-(S)-S-oxide-reductase-MsrA
MVLRSEILVNKNVMPTAEQALPGRETPMSLPEFHYVFEGTPLLGPFFEGAIDFAIFGLGCFWGAERRFWQREGVVSTVVGYAGGFTPHPTYEEVCSGLTGHTEVVLVVFDKDKVSYRELLAMFWELHNPTQGMRQGNDVGTQYRSAIYCTSPEQLDQAKASRDAFQAELTKAGFGEITTEIDQAPTVYFAEAYHQQYLAKNPDGYCGIGGTGVCLPPSLQGN
>NZ_CP010979.1|WP_019470529.1|4649892_4650516_+|glutathione-S-transferase
MATMTLFHSPLSPFVRKVMVVLHETSQLERVKLQAVNISPVSGDPQLNQDNPIGKIPALRLDDGTVLHDSRVICEYLDLQHVGLPLLPREGSARWRRMTLVSQADAIMDAAVSSRYESFLRPEDKRWDGWLQAQGDKIRRSLANLEQEHLPELVSGFDLAAIGVACALGYLDLRQPEFGWRERQPGLAAWYAEVAKRPSMVATSPVA
>NZ_CP010979.1|WP_019470528.1|4650658_4651987_-|cell-envelope-integrity-protein-CreD
MTKTLGYKLGMIAVLILLLLIPLLLINGLIDERQALRDNVLRDIAQSASFDQQLSGPLLVVPYRKYQRRWIEKDGERTQETSTVAGHLYFLPETFAADLGVDTELRARGIYQARLFHAKGRISGRFKLPERWGIDKDFDDYRFDKPFLVVGISDIRGIENGLELSMDEHKVPFEAGTQLDWMRGGVHASLPGLDGMQAREFSYGFDLALQGTGQLHIVPVGRTSSVDMRANWPHPSFVGNYLPNRRDIDAQGFSAHWQTSFFATNLEDALRQCATAGQCEDFSERSFGVSFVDPVDQYLKSERAIKYALLFIALTFAGFFLFEVLKNLSVHPVQYILVGVALAFFYLLLLSLSEHIGFGLAYGLSASACVLLIGFYLSHVLRSLGRGVGFAAGLAALYAMLYGLLSAEDYALLMGSLLCFGLLGVFMVLTRRLDWARVGRSA
>NZ_CP010979.1|WP_019470184.1|4652187_4653624_-|two-component-system-sensor-histidine-kinase-CreC
MRLGIRIFLVYFLFVGLAGYFLLNTVREQIRPVVRQSSEETLVDTANLLAEILRDDVKAGTLNQSRLPQVLKAYGSRSPGAQIWGLAKNQVSHRIYVTDAKGIVLLDSSGEALGKDYSQWNDVLLTLRGQYGARSTRSDPNDESTSVMHVGAPIIDDGKVIGVVTVAKPNSSLQPYIDRSERRLLTLGLGLIGLGLLIGAALSWWLARSLRRLARYAQAVSEGERAALPHYKGGELAHLAQAVERMRTQLEGKAYVERYVHTLTHELKSPLAAIRGACELLQDEGMPADQRARFAGNIERESERLQQMVERLLNLARVEQMQALEDEQQVALAALVDELLLAHGARIEGAGLHVRQRVPAGLRLLCDPFLMRQALANLLDNALDFTPAGGALLFDLERAGERVALSLFNQGQAIPAYAIGRVSERFYSLPRPGSGRKSTGLGLNFVAEVMQLHGGALAVDNVDGGVRVRLWLPVRRIS
>NZ_CP010979.1|WP_019470185.1|4653623_4654304_-|two-component-system-response-regulator-CreB
MPHILIVEDEAAIADTLIYALQADGHSTEWVTLGSAALDQQRQRPADLIILDIGLPDISGFETCRQLRRFTEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMGPRAAPATDAALFQLDTLRMQITYRGQPLTLTRHEFRLLQSLLEQPQRVFSREQLLDALGVASDAGYERTIDSHIKSLRAKLRQVAGDAEPIQTHRGLGYSYSPDHA
>NZ_CP010979.1|WP_019470186.1|4654541_4655042_-|ATP-dependent-zinc-protease
MKSLFAMLSLLALPVMAAEPTIYGRYENIALPELGETLKAKMDTGAFTASLSAKDIELFSRDGDEWVRFRLATKDSDGKVYEHKVSRISKIKGRADEEEEGDAPEISKRPVVDLELCLGDVKRTVEVNLVDRSSFNYPLLVGSKALREFKAAVNPAKKFTAGKPDC
>NZ_CP010979.1|WP_019470187.1|4655224_4656112_+|acyltransferase
MRRLLTGILTTTLLLLNTVVLICPLLVFALLKLVLPGRGRDYASWAVMWVAETWSEIDKAIFALCIPTKWDIRGVENLRKDTSYLAVSNHQTWVDIPALIESLNRRTPFFKFFLKKELIWVPLLGLAWWGLDYPFMKRYSKAFLEKHPELKGKDLEITKAACELFKRQPVTVVNYLEGTRFTEAKRQEQQSPYRYLLKPKAGGVAFVLAALGEQLDALLDVTIVYPGNQAPGFWALLNGSISRVIIDIQVRELDPALWAGDYENDPEFRQTVQAWVNQLWVEKDQRIEQLKAEMG
>NZ_CP010979.1|WP_019470188.1|4656355_4657705_+|amino-acid-permease
MANQPSSAPPQLRRVLGLPALVFFGLVYMVPLTIFTTYGIVTELTGGRTAGAYLVTLVAMLFTAASYSFMVKRFPVAGSAYSYTNMAFGPNIGFLAGWSLLLDYLFLPMINYLLIGLFLNIAFPAVPAWAFVLACIALVTVLNVVGINSVAKTSNLIVGAQIVFIGVFVALSCQTLAGQPLDLLSPLLGDGNKPGFGHLMAGAAVLCLSFLGFDAVSTLAEECRDARRDVPRAIILTTLFAGLLFTLLAYVSQLVLPGSSFANADAAANEVMFKAGGQFLTNFFTAAYVAGSLGSALASQAAVSRILFTMGRDNVLPRRSFGYLSPRFGTPVFAILLVSAFSLLALVIDLATLASLISFGALVAFSAVNLAVVKTHLMDDASQRNARGLVSYGVVPLVGLGLTLWLWTSLSALTLVIGLCWFALGLAYLAVLTAGFRRPVRLVDFTEAA
>NZ_CP010979.1|WP_019470189.1|4657903_4658479_-|DUF2780-domain-containing-protein
MKAFTLATLMSLAASPVFAFNLSDAANAVSAMQTQKQQGQVQAPEAQANLLNTLGSELKITPEQAVGGAGAMLGLARNNLSSDDYGQLTKAVPGLDLLAGANALGGLSGLGDLLGKNSENQSALSNALGNNVENRSDLDSAFKALGMDTGMIGQFAPLILQYLGQQGIAGSLLQNLGSLWTTPAPLAQPSV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010979_2	2.1\|3601050\|27\|NZ_CP010979\|CRISPRCasFinder	3601050-3601076	27	LT559120	Nonomuraea sp. ATCC 39727 isolate nono1 genome assembly, plasmid: III	16960-16986	5	0.815

1. spacer 2.1|3601050|27|NZ_CP010979|CRISPRCasFinder matches to LT559120 (Nonomuraea sp. ATCC 39727 isolate nono1 genome assembly, plasmid: III) position: , mismatch: 5, identity: 0.815

agcaatttccacagggcccccacatct	CRISPR spacer
ggacatgtccacatggcccccacatct	Protospacer
.*  ** ****** *************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

638776 : 648019

uncultured_Caudovirales_phage(75.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016488116.1\|638776_640057_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.9e-96	54.1
WP_028613324.1\|640057_641449_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_019473858.1\|641585_642545_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_026034699.1\|642639_643641_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	2.1e-157	81.1
WP_016488112.1\|643652_643988_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.3e-42	76.6
WP_028613323.1\|643984_644281_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	2.5e-26	62.6
WP_028613322.1\|644280_644640_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.9e-36	65.0
WP_016488109.1\|644641_645034_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.5e-53	79.1
WP_028613321.1\|645210_646590_-	uracil-xanthine permease	H9YQ34	environmental_Halophage	1.6e-27	51.1
WP_019474007.1\|646794_647013_+	hypothetical protein	NA	NA	NA	NA
WP_019471940.1\|647347_648019_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.6e-105	91.5

DBSCAN-SWA_2

770003 : 776716

uncultured_Caudovirales_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019470684.1\|770003_771023_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	3.4e-22	26.1
WP_019470682.1\|771638_771959_-	hypothetical protein	NA	NA	NA	NA
WP_026034375.1\|772004_772706_-	hypothetical protein	A0A2H4J991	uncultured_Caudovirales_phage	6.1e-55	48.0
WP_019470680.1\|772808_773237_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1L5C2A3	Pseudoalteromonas_phage	6.7e-12	39.8
WP_019470679.1\|773226_774501_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.0e-108	48.1
WP_019470678.1\|774494_774704_+	hypothetical protein	A0A2H4JGS3	uncultured_Caudovirales_phage	4.5e-06	44.8
WP_019470677.1\|774707_775070_+	hypothetical protein	NA	NA	NA	NA
WP_019470676.1\|775407_775614_-	hypothetical protein	NA	NA	NA	NA
WP_019470675.1\|775705_776716_-	alcohol dehydrogenase AdhP	A0A2K9L339	Tupanvirus	5.2e-31	28.2

DBSCAN-SWA_3

858264 : 907154

Pseudomonas_phage(57.14%)

integrase,terminase

attL 859050:859097|attR 908489:908536

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003250679.1\|858264_858567_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	4.0e-11	38.9
WP_003250681.1\|858547_858904_+	MerR family transcriptional regulator	NA	NA	NA	NA
859050:859097	attL	NA	NA	NA	NA
WP_019471866.1\|859177_860359_-\|integrase	tyrosine-type recombinase/integrase	A0A059VF45	Pseudomonas_phage	3.0e-163	70.1
WP_026034494.1\|860868_861186_-	hypothetical protein	NA	NA	NA	NA
WP_019471863.1\|861238_861457_-	hypothetical protein	A0A0N9ERZ3	Pseudomonas_phage	1.0e-24	68.1
WP_019471862.1\|861500_862073_-	hypothetical protein	A0A2H4J611	uncultured_Caudovirales_phage	2.0e-11	32.5
WP_019471861.1\|862069_862321_-	hypothetical protein	A0A2H4J399	uncultured_Caudovirales_phage	3.4e-40	95.2
WP_019471860.1\|862317_863112_-	hypothetical protein	Q5QF32	Pseudomonas_virus	3.7e-72	54.5
WP_155412667.1\|864148_864433_+	hypothetical protein	NA	NA	NA	NA
WP_019471858.1\|864450_865374_-	DNA cytosine methyltransferase	A0A142KB20	Gordonia_phage	1.6e-26	38.0
WP_155412668.1\|865429_865687_+	hypothetical protein	NA	NA	NA	NA
WP_019471856.1\|865831_866056_+	entry exclusion lipoprotein TrbK	NA	NA	NA	NA
WP_019471855.1\|866139_866763_-	hypothetical protein	A0A2H4JC30	uncultured_Caudovirales_phage	1.5e-60	55.3
WP_019471853.1\|867121_867637_-	hypothetical protein	A0A2H4JAQ1	uncultured_Caudovirales_phage	1.0e-06	49.2
WP_019471852.1\|867611_867977_-	hypothetical protein	A0A2H4J0L9	uncultured_Caudovirales_phage	1.3e-51	86.0
WP_019471851.1\|868058_868592_-	hypothetical protein	NA	NA	NA	NA
WP_019471850.1\|868588_869218_-	YqaJ viral recombinase family protein	A0A0S2SY31	Pseudomonas_phage	1.3e-80	70.8
WP_019471849.1\|869204_870149_-	recombinase RecT	H9C0R8	Aeromonas_phage	2.0e-64	52.0
WP_019471848.1\|870156_871287_-	hypothetical protein	W6MYA7	Pseudomonas_phage	1.7e-30	59.7
WP_019471845.1\|871617_872160_-	hypothetical protein	NA	NA	NA	NA
WP_019471844.1\|872156_872351_-	hypothetical protein	A0A1B0VMB8	Pseudomonas_phage	2.5e-14	61.3
WP_019471843.1\|872347_872764_-	hypothetical protein	NA	NA	NA	NA
WP_155412669.1\|872787_873075_-	hypothetical protein	NA	NA	NA	NA
WP_019471841.1\|873095_873335_-	hypothetical protein	NA	NA	NA	NA
WP_019471840.1\|873775_874042_-	hypothetical protein	H2BD57	Pseudomonas_phage	5.2e-23	61.6
WP_026034493.1\|874523_875234_-	helix-turn-helix transcriptional regulator	W6MVG5	Pseudomonas_phage	1.0e-94	72.9
WP_033692338.1\|875340_875544_+	helix-turn-helix domain-containing protein	W6MWX8	Pseudomonas_phage	4.2e-25	88.1
WP_019471838.1\|875574_875763_+	hypothetical protein	B5WZX7	Pseudomonas_phage	6.5e-12	59.7
WP_019471836.1\|876023_876230_+	hypothetical protein	NA	NA	NA	NA
WP_019471835.1\|876250_876463_+	hypothetical protein	NA	NA	NA	NA
WP_026034492.1\|876586_877387_+	Rha family transcriptional regulator	F1C5A3	Cronobacter_phage	1.5e-36	49.1
WP_019471833.1\|877383_877698_+	hypothetical protein	NA	NA	NA	NA
WP_019471832.1\|877694_877892_+	hypothetical protein	NA	NA	NA	NA
WP_019471831.1\|877888_878644_+	hypothetical protein	A0A2H4J580	uncultured_Caudovirales_phage	2.3e-23	68.0
WP_019471830.1\|878640_879402_+	Replication protein P	A0A2D1GNB3	Pseudomonas_phage	2.7e-72	63.6
WP_019471829.1\|879398_879659_+	hypothetical protein	A0A2H4J0W8	uncultured_Caudovirales_phage	2.4e-25	61.8
WP_019471828.1\|879658_879988_+	hypothetical protein	NA	NA	NA	NA
WP_019471827.1\|879984_880455_+	hypothetical protein	A0A2H4J106	uncultured_Caudovirales_phage	2.7e-54	63.5
WP_019471826.1\|880451_880751_+	helix-turn-helix transcriptional regulator	A0A1W6JTA9	Pseudomonas_phage	7.0e-08	43.1
WP_019471825.1\|880741_881344_+	ninG protein	A0A0U1VZM0	Pseudomonas_phage	1.3e-56	57.4
WP_019471823.1\|881486_882173_+	hypothetical protein	J7HXH6	Pseudomonas_phage	9.3e-56	51.2
WP_026034491.1\|882341_882668_+	hypothetical protein	A0A088FVG2	Escherichia_phage	1.9e-22	52.8
WP_019471821.1\|882664_882976_+	hypothetical protein	A0A193GYR7	Enterobacter_phage	1.9e-08	40.9
WP_019471820.1\|883046_883295_+	hypothetical protein	NA	NA	NA	NA
WP_026034490.1\|883344_883557_+	hypothetical protein	A0A2H4J0Y9	uncultured_Caudovirales_phage	7.6e-17	66.7
WP_019471819.1\|883565_884162_+	hypothetical protein	A0A0S2SYA5	Pseudomonas_phage	1.0e-87	76.3
WP_019471818.1\|884193_884655_+	DUF2280 domain-containing protein	A0A1B0VMH2	Pseudomonas_phage	1.1e-52	80.2
WP_019471817.1\|884641_885928_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	5.3e-145	59.1
WP_019471816.1\|885927_887247_+	DUF1073 domain-containing protein	A0A059VA58	Pseudomonas_phage	2.3e-143	58.0
WP_019471815.1\|887255_888359_+	DUF2213 domain-containing protein	A0A059VF71	Pseudomonas_phage	8.1e-78	46.0
WP_019471814.1\|888362_888797_+	hypothetical protein	L7TJK9	Rhizobium_phage	4.1e-17	41.4
WP_019471813.1\|888809_889736_+	DUF2184 domain-containing protein	L7TMZ5	Rhizobium_phage	7.8e-98	56.8
WP_019471812.1\|889738_890131_+	hypothetical protein	NA	NA	NA	NA
WP_019471811.1\|890173_890692_+	hypothetical protein	A0A059VG19	Pseudomonas_phage	4.7e-68	76.3
WP_019471810.1\|890688_891690_+	hypothetical protein	A0A059VJV1	Pseudomonas_phage	7.2e-73	48.2
WP_019471809.1\|891691_892075_+	hypothetical protein	A0A059VA70	Pseudomonas_phage	1.2e-36	60.6
WP_019471808.1\|892074_892494_+	hypothetical protein	A0A059VF88	Pseudomonas_phage	8.5e-20	38.0
WP_019471807.1\|892490_892904_+	hypothetical protein	NA	NA	NA	NA
WP_019471806.1\|893024_893204_+	hypothetical protein	NA	NA	NA	NA
WP_019471805.1\|893196_893397_+	hypothetical protein	NA	NA	NA	NA
WP_019471804.1\|893491_894655_+	Ig domain-containing protein	A0A059VG08	Pseudomonas_phage	1.7e-118	69.7
WP_019471803.1\|894731_895205_+	hypothetical protein	A0A059VF34	Pseudomonas_phage	6.2e-35	51.0
WP_019471802.1\|895252_895462_+	hypothetical protein	A0A059VJS3	Pseudomonas_phage	1.5e-12	54.4
WP_019471801.1\|895472_895631_+	hypothetical protein	NA	NA	NA	NA
WP_019471800.1\|895687_895984_+	hypothetical protein	NA	NA	NA	NA
WP_019471799.1\|896039_899636_+	hypothetical protein	A0A2H4J107	uncultured_Caudovirales_phage	1.1e-126	38.7
WP_019471798.1\|899648_900101_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.8e-31	44.9
WP_019471797.1\|900097_900577_+	DUF1833 domain-containing protein	J7I404	Pseudomonas_phage	3.1e-26	43.3
WP_019471796.1\|900579_900957_+	hypothetical protein	B5WZT7	Pseudomonas_phage	3.6e-25	44.1
WP_019471795.1\|900953_904007_+	hypothetical protein	B5WZT8	Pseudomonas_phage	2.6e-222	41.7
WP_155412670.1\|904063_906028_+	hypothetical protein	NA	NA	NA	NA
WP_019471793.1\|906064_906523_-	hypothetical protein	NA	NA	NA	NA
WP_019471792.1\|906665_907154_+	glycoside hydrolase family 104 protein	Q9MC90	Pseudomonas_phage	8.1e-54	66.7
908489:908536	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1370411 : 1426904

Pseudomonas_phage(35.42%)

tail,holin,protease,portal,integrase,head,capsid,terminase

attL 1363503:1363518|attR 1389952:1389967

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1363503:1363518	attL	NA	NA	NA	NA
WP_012272468.1\|1370411_1371998_-	ABC-F family ATPase	A0A2K9L0W2	Tupanvirus	7.1e-59	27.6
WP_019471582.1\|1372030_1373245_-\|integrase	site-specific integrase	A0A0U4B0G7	Pseudomonas_phage	9.1e-147	64.0
WP_019471583.1\|1373496_1373994_-	hypothetical protein	A0A1B0VM52	Pseudomonas_phage	1.0e-35	54.6
WP_019471584.1\|1374045_1374276_-	hypothetical protein	A0A2D2W6A6	Pectobacterium_phage	7.2e-05	39.3
WP_019471585.1\|1374319_1374715_-	DUF2591 domain-containing protein	A0A125RNP6	Pseudomonas_phage	1.2e-10	34.8
WP_155412721.1\|1374714_1375083_-	hypothetical protein	NA	NA	NA	NA
WP_014591205.1\|1375103_1375355_-	hypothetical protein	A0A2H4J399	uncultured_Caudovirales_phage	6.8e-41	97.6
WP_019471587.1\|1375351_1375846_-	hypothetical protein	I2GUG5	Acinetobacter_phage	6.1e-09	32.2
WP_019471589.1\|1376365_1377073_-	hypothetical protein	A0A192Y6F5	Salmonella_phage	3.6e-10	42.5
WP_019471591.1\|1377320_1379066_-	DNA methyltransferase	Q5QF27	Pseudomonas_virus	3.5e-248	63.8
WP_019471592.1\|1379202_1379373_+	hypothetical protein	NA	NA	NA	NA
WP_033692269.1\|1379369_1379588_+	entry exclusion lipoprotein TrbK	NA	NA	NA	NA
WP_019471594.1\|1380629_1381445_-	DUF2303 family protein	A0A0P0ZBZ4	Stx2-converting_phage	3.4e-49	42.6
WP_016485684.1\|1381471_1381819_-	hypothetical protein	I3PUY8	Vibrio_phage	4.7e-24	50.0
WP_019471595.1\|1381907_1382450_-	hypothetical protein	A0A2H4J7C8	uncultured_Caudovirales_phage	1.3e-15	32.9
WP_019471596.1\|1382446_1382716_-	hypothetical protein	NA	NA	NA	NA
WP_019471597.1\|1382735_1383119_-	helix-turn-helix transcriptional regulator	A0A2H4JA92	uncultured_Caudovirales_phage	1.1e-24	59.8
WP_019471598.1\|1383466_1383691_-	hypothetical protein	NA	NA	NA	NA
WP_014591195.1\|1384338_1384656_+	DUF1654 domain-containing protein	A0A2D1GND3	Pseudomonas_phage	1.8e-22	52.4
WP_014591194.1\|1384684_1385566_-	LexA family transcriptional regulator	H2BD63	Pseudomonas_phage	2.5e-45	39.9
WP_155412672.1\|1385650_1385866_+	Cro/Cl family transcriptional regulator	NA	NA	NA	NA
WP_019471600.1\|1386022_1386880_+	hypothetical protein	W6MYB0	Pseudomonas_phage	1.7e-35	33.5
WP_019471601.1\|1386869_1387664_+	AAA family ATPase	A0A2H4J3E5	uncultured_Caudovirales_phage	5.7e-73	53.4
WP_019471602.1\|1387663_1387960_+	DUF1364 domain-containing protein	A0A220NQY2	Salmonella_phage	1.5e-31	69.9
WP_019471603.1\|1387956_1388385_+	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	1.0e-44	64.3
WP_019471604.1\|1388381_1389671_+\|integrase	site-specific integrase	A0A2D1GND4	Pseudomonas_phage	2.2e-114	52.0
WP_019471606.1\|1389999_1390389_+	antitermination protein Q	A0A1W6JTD2	Pseudomonas_phage	3.5e-44	64.8
1389952:1389967	attR	NA	NA	NA	NA
WP_026034466.1\|1390713_1391040_+\|holin	holin	A0A0A0YUH2	Pseudomonas_phage	3.6e-34	73.0
WP_019471608.1\|1391079_1391316_-	hypothetical protein	NA	NA	NA	NA
WP_019471609.1\|1391515_1391746_+	hypothetical protein	A0A2C9CY14	Yersinia_phage	2.2e-17	63.4
WP_019471610.1\|1391745_1391970_+	hypothetical protein	NA	NA	NA	NA
WP_019471612.1\|1392139_1392478_+	HNH endonuclease	B5WZZ4	Pseudomonas_phage	2.1e-29	55.1
WP_019471613.1\|1392636_1393113_+\|terminase	terminase small subunit	A0A2H4J8R0	uncultured_Caudovirales_phage	9.7e-20	45.1
WP_019471614.1\|1393116_1394796_+\|terminase	terminase large subunit	S4TSQ6	Salmonella_phage	4.4e-192	60.6
WP_019471616.1\|1394946_1396245_+\|portal	phage portal protein	H2BDA8	Pseudomonas_virus	4.3e-187	72.6
WP_019471617.1\|1396261_1397119_+\|protease	Clp protease ClpP	A0A1V0E8B8	Vibrio_phage	7.2e-98	64.3
WP_019471618.1\|1397121_1398303_+\|capsid	phage major capsid protein	A0A218MGA4	Pseudomonas_phage	1.3e-121	61.1
WP_019471619.1\|1398351_1398888_+	hypothetical protein	NA	NA	NA	NA
WP_026034467.1\|1398891_1399233_+\|head,tail	phage gp6-like head-tail connector protein	C4ML08	Xanthomonas_virus	7.9e-16	40.0
WP_080956783.1\|1399229_1399556_+\|head	phage head closure protein	A0A2H4JC00	uncultured_Caudovirales_phage	1.9e-19	48.2
WP_019471622.1\|1399738_1400314_+	HK97 gp10 family phage protein	A0A2D1GNN2	Pseudomonas_phage	2.8e-53	56.8
WP_019471623.1\|1400306_1400693_+	DUF3168 domain-containing protein	A0A2D1GNT4	Pseudomonas_phage	9.8e-55	82.8
WP_019471624.1\|1400747_1401248_+	hypothetical protein	A0A2D1GNF2	Pseudomonas_phage	4.2e-66	75.2
WP_019471625.1\|1401289_1401634_+	hypothetical protein	NA	NA	NA	NA
WP_019471627.1\|1401914_1405205_+\|tail	phage tail tape measure protein	A0A2D1GNQ1	Pseudomonas_phage	7.3e-66	33.0
WP_019471628.1\|1405204_1405543_+\|tail	phage tail protein	I6PBN7	Cronobacter_phage	6.0e-16	38.8
WP_019471629.1\|1405539_1406289_+\|tail	phage minor tail protein L	A0A0S2SY57	Pseudomonas_phage	3.1e-121	77.9
WP_019471630.1\|1406291_1407047_+	C40 family peptidase	A0A2H4J1J7	uncultured_Caudovirales_phage	5.9e-120	75.3
WP_019471631.1\|1407235_1407736_-\|protease	retroviral-like aspartic protease	NA	NA	NA	NA
WP_155412673.1\|1407921_1408554_+	hypothetical protein	NA	NA	NA	NA
WP_019471633.1\|1408654_1408966_+	hypothetical protein	NA	NA	NA	NA
WP_019471634.1\|1409370_1409958_+\|tail	tail assembly protein	A0A2H4J1H0	uncultured_Caudovirales_phage	8.4e-74	73.3
WP_080956854.1\|1416281_1419206_+	DUF1983 domain-containing protein	A0A2H4J0B1	uncultured_Caudovirales_phage	1.0e-39	53.7
WP_019471636.1\|1419205_1420261_+	hypothetical protein	A0A2H4JA10	uncultured_Caudovirales_phage	5.0e-141	67.1
WP_155412674.1\|1420270_1420777_+	hypothetical protein	A0A2H4J2B7	uncultured_Caudovirales_phage	2.0e-15	67.1
WP_019471637.1\|1420787_1421243_+\|tail	tail fiber assembly protein	A0A2H4J9Z7	uncultured_Caudovirales_phage	1.3e-16	48.9
WP_019471638.1\|1421304_1421535_+	hypothetical protein	NA	NA	NA	NA
WP_019471639.1\|1421531_1421981_+	structural protein	A0A2R3UAM8	Myoviridae_environmental_samples	3.6e-32	52.7
WP_026034468.1\|1421977_1422487_+	DUF2514 domain-containing protein	A0A2H4J3Q6	uncultured_Caudovirales_phage	2.7e-36	59.1
WP_019471641.1\|1422583_1422868_+	hypothetical protein	NA	NA	NA	NA
WP_019471642.1\|1423001_1423415_+	response regulator	NA	NA	NA	NA
WP_019471643.1\|1423429_1423840_-	low affinity iron permease family protein	A0A1C9EHA1	Mycobacterium_phage	9.0e-06	40.8
WP_019471644.1\|1423974_1424475_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_019471645.1\|1424755_1425199_-	DUF421 domain-containing protein	NA	NA	NA	NA
WP_019471646.1\|1425208_1425715_-	hypothetical protein	NA	NA	NA	NA
WP_019471647.1\|1425997_1426231_+	hypothetical protein	NA	NA	NA	NA
WP_026034469.1\|1426311_1426536_+	hypothetical protein	A0A2H4JG60	uncultured_Caudovirales_phage	9.5e-26	78.4
WP_019471649.1\|1426610_1426904_+	hypothetical protein	A0A2H4JER5	uncultured_Caudovirales_phage	6.1e-33	67.0

DBSCAN-SWA_5

1929636 : 1969531

Klebsiella_phage(33.33%)

protease,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_028613918.1\|1929636_1930119_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_028613917.1\|1930118_1931939_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_028613916.1\|1931902_1932973_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_028613915.1\|1932969_1935567_+	type VI secretion system ATPase TssH	A0A0A8J958	Klebsiella_phage	6.4e-89	31.1
WP_028613914.1\|1935591_1936314_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_028613913.1\|1936310_1937654_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_028613912.1\|1937650_1938367_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_028613911.1\|1938397_1942195_+	ImcF-like family protein	NA	NA	NA	NA
WP_028613910.1\|1942191_1943100_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_028613909.1\|1943096_1945589_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_016499518.1\|1945732_1946251_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_028613908.1\|1946345_1947431_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_028613907.1\|1947479_1949996_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	5.3e-157	34.8
WP_028613906.1\|1950084_1950591_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_028613905.1\|1950590_1951556_+	DUF4880 domain-containing protein	NA	NA	NA	NA
WP_028613904.1\|1951768_1954186_+	TonB-dependent receptor	NA	NA	NA	NA
WP_028613411.1\|1954447_1955401_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_028613903.1\|1955539_1957189_+	MFS transporter	NA	NA	NA	NA
WP_028613902.1\|1957185_1958319_+	HlyD family secretion protein	NA	NA	NA	NA
WP_028613901.1\|1958335_1959211_-	AEC family transporter	NA	NA	NA	NA
WP_028613900.1\|1959726_1961025_+	MFS transporter	NA	NA	NA	NA
WP_028613899.1\|1961190_1961499_+	hypothetical protein	NA	NA	NA	NA
WP_028613898.1\|1961547_1962099_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_028613897.1\|1962653_1963715_+	3-deoxy-7-phosphoheptulonate synthase	S4W5F1	Pandoravirus	1.5e-84	49.4
WP_028613896.1\|1963794_1964076_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_028613895.1\|1964218_1966018_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_028613894.1\|1966014_1967073_+	microcin C ABC transporter permease YejB	NA	NA	NA	NA
WP_028613893.1\|1967072_1968089_+	ABC transporter permease	NA	NA	NA	NA
WP_028613892.1\|1968225_1968996_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA
WP_028613891.1\|1969051_1969531_+\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA

DBSCAN-SWA_6

2726010 : 2761982

uncultured_Caudovirales_phage(95.12%)

tail,plate,transposase,integrase,head

attL 2727148:2727163|attR 2746259:2746274

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019470950.1\|2726010_2726688_-	LexA family transcriptional regulator	A0A2H4J7C3	uncultured_Caudovirales_phage	1.8e-64	55.1
WP_080956799.1\|2726926_2727214_+	hypothetical protein	A0A125RN89	Pseudomonas_phage	5.8e-20	51.8
2727148:2727163	attL	NA	NA	NA	NA
WP_019470949.1\|2727255_2729304_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2H4J707	uncultured_Caudovirales_phage	5.8e-271	66.1
WP_019470948.1\|2729362_2730085_+	AAA family ATPase	A0A2H4J809	uncultured_Caudovirales_phage	3.1e-94	68.8
WP_019470947.1\|2730084_2730858_+	hypothetical protein	A0A2H4J7A8	uncultured_Caudovirales_phage	4.5e-107	74.2
WP_019470946.1\|2731215_2731722_+	hypothetical protein	A0A2H4J7X8	uncultured_Caudovirales_phage	3.2e-77	86.3
WP_019470945.1\|2731721_2732219_+	hypothetical protein	A0A2H4JFV8	uncultured_Caudovirales_phage	2.0e-84	94.5
WP_155412688.1\|2732211_2732688_+	hypothetical protein	A0A2H4J1Q8	uncultured_Caudovirales_phage	4.4e-81	95.6
WP_019470943.1\|2732684_2733326_+	DUF3164 family protein	A0A2H4IYN0	uncultured_Caudovirales_phage	1.8e-106	94.8
WP_019470942.1\|2733365_2733629_+	hypothetical protein	NA	NA	NA	NA
WP_019470940.1\|2733962_2734649_+	DUF2786 domain-containing protein	A0A2H4JCP9	uncultured_Caudovirales_phage	1.3e-113	93.0
WP_019470939.1\|2734645_2735047_+	regulatory protein GemA	A0A2H4J581	uncultured_Caudovirales_phage	1.4e-64	94.0
WP_019470938.1\|2735043_2735496_+	hypothetical protein	A0A2H4J0B0	uncultured_Caudovirales_phage	5.7e-62	75.3
WP_019470937.1\|2735928_2736234_+	membrane protein	A0A2H4JBL7	uncultured_Caudovirales_phage	2.9e-49	98.0
WP_026034405.1\|2736236_2736860_+	transglycosylase SLT domain-containing protein	A0A2H4J7R8	uncultured_Caudovirales_phage	2.5e-116	97.6
WP_020628564.1\|2736856_2737495_+	hypothetical protein	A0A2H4JEG6	uncultured_Caudovirales_phage	2.3e-88	80.7
WP_019470934.1\|2737481_2737697_+	hypothetical protein	A0A2H4J994	uncultured_Caudovirales_phage	1.1e-34	98.6
WP_019470933.1\|2737693_2738026_+	hypothetical protein	A0A2H4J7V5	uncultured_Caudovirales_phage	4.3e-43	83.6
WP_019470932.1\|2738022_2738331_+	hypothetical protein	A0A2H4JGU5	uncultured_Caudovirales_phage	8.7e-46	85.3
WP_019470931.1\|2738330_2738849_+	DUF3486 family protein	A0A2H4JD50	uncultured_Caudovirales_phage	3.3e-82	95.3
WP_019470930.1\|2738851_2739307_-	hypothetical protein	NA	NA	NA	NA
WP_026034404.1\|2739363_2740905_+	hypothetical protein	A0A2H4JF57	uncultured_Caudovirales_phage	1.9e-274	92.8
WP_019470928.1\|2740904_2742455_+	DUF935 domain-containing protein	A0A2H4JGA9	uncultured_Caudovirales_phage	4.9e-262	87.8
WP_019470926.1\|2742682_2743963_+	hypothetical protein	A0A2H4IYU7	uncultured_Caudovirales_phage	1.4e-206	81.7
WP_019470925.1\|2743993_2744542_+	phage virion morphogenesis protein	A0A2H4J9E5	uncultured_Caudovirales_phage	3.3e-88	90.1
WP_019470924.1\|2744836_2745814_+	hypothetical protein	A0A2H4J9A2	uncultured_Caudovirales_phage	7.7e-96	54.3
WP_019470923.1\|2745827_2746721_+\|head	head protein	A0SMP3	Pseudomonas_virus	1.3e-89	55.8
2746259:2746274	attR	NA	NA	NA	NA
WP_019470922.1\|2746726_2747344_+	hypothetical protein	A0A2H4J7W4	uncultured_Caudovirales_phage	9.0e-42	47.7
WP_019470921.1\|2747343_2747835_+	DUF1320 domain-containing protein	A0A2H4JB66	uncultured_Caudovirales_phage	7.3e-79	93.9
WP_019470920.1\|2747834_2748416_+	DUF1834 family protein	A0A2H4JEC0	uncultured_Caudovirales_phage	6.8e-92	85.9
WP_019470919.1\|2748415_2748607_+	DUF2635 domain-containing protein	A0A2H4JED6	uncultured_Caudovirales_phage	1.4e-17	74.6
WP_019470918.1\|2748603_2749701_+	hypothetical protein	A0A2H4JFT7	uncultured_Caudovirales_phage	9.6e-164	84.1
WP_019470917.1\|2749712_2750084_+	hypothetical protein	A0A2H4J9F8	uncultured_Caudovirales_phage	2.2e-51	84.6
WP_019470916.1\|2750089_2750473_+	hypothetical protein	A0A2H4JD25	uncultured_Caudovirales_phage	4.1e-45	81.7
WP_019470915.1\|2750575_2750842_+	hypothetical protein	A0A2H4J9B1	uncultured_Caudovirales_phage	5.4e-36	84.1
WP_019470914.1\|2750882_2753078_+	hypothetical protein	A0A2H4JC53	uncultured_Caudovirales_phage	0.0e+00	93.3
WP_019470913.1\|2753074_2754400_+	hypothetical protein	A0A2H4JGT4	uncultured_Caudovirales_phage	1.1e-219	87.3
WP_019470912.1\|2754389_2755514_+\|tail	tail protein	A0A2H4J9E6	uncultured_Caudovirales_phage	8.0e-198	91.5
WP_019470911.1\|2755513_2756074_+\|plate	phage baseplate assembly protein	A0A2H4JFE0	uncultured_Caudovirales_phage	3.0e-89	87.6
WP_019470910.1\|2756159_2756507_+	hypothetical protein	A0A2H4JDR8	uncultured_Caudovirales_phage	1.8e-55	93.0
WP_026034402.1\|2756506_2757583_+\|plate	baseplate J/gp47 family protein	A0A2H4JC98	uncultured_Caudovirales_phage	8.0e-147	74.4
WP_019470908.1\|2757579_2758185_+	DUF2313 domain-containing protein	A0A2H4J9D6	uncultured_Caudovirales_phage	9.0e-79	74.5
WP_019470907.1\|2758177_2760202_+	hypothetical protein	NA	NA	NA	NA
WP_019470906.1\|2760216_2760966_+	hypothetical protein	NA	NA	NA	NA
WP_019470905.1\|2761040_2761982_+	hypothetical protein	A0A2H4J9C3	uncultured_Caudovirales_phage	7.0e-62	45.2

DBSCAN-SWA_7

2854336 : 2890110

Feldmannia_species_virus(25.0%)

coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_028613478.1\|2854336_2855305_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_028613477.1\|2855301_2857599_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_028613476.1\|2857707_2858484_-	molecular chaperone	NA	NA	NA	NA
WP_028613475.1\|2858524_2859028_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_028613474.1\|2859031_2859565_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_028613473.1\|2859583_2860120_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_028613472.1\|2860150_2860678_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_028613471.1\|2860948_2863195_+	GAF domain-containing protein	B5LWN8	Feldmannia_species_virus	1.7e-26	22.9
WP_028613470.1\|2863210_2863672_+	response regulator	NA	NA	NA	NA
WP_028613469.1\|2863685_2866073_+	hybrid sensor histidine kinase/response regulator	Q8QNA2	Ectocarpus_siliculosus_virus	1.9e-10	25.8
WP_012271609.1\|2866538_2866781_+	hypothetical protein	NA	NA	NA	NA
WP_028613468.1\|2866909_2867980_+	cell division protein ZapE	NA	NA	NA	NA
WP_028613467.1\|2868107_2869997_-	propionyl-CoA synthetase	A0A2H4PQU7	Staphylococcus_phage	2.8e-54	29.5
WP_028613466.1\|2870175_2871042_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_028613465.1\|2871015_2872170_-	HPP family protein	M1NSC5	Streptococcus_phage	9.3e-08	32.0
WP_028613464.1\|2872453_2873773_-	sensor histidine kinase	NA	NA	NA	NA
WP_028613463.1\|2873769_2874438_-	response regulator transcription factor	NA	NA	NA	NA
WP_028613462.1\|2874438_2874753_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_028613461.1\|2874752_2875061_-	peptidase	NA	NA	NA	NA
WP_028613460.1\|2875299_2876379_+	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_012271598.1\|2876432_2876789_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_028613459.1\|2876917_2877433_-	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_028613458.1\|2877803_2880413_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
WP_028613457.1\|2880587_2882072_-	2-methylcitrate dehydratase	NA	NA	NA	NA
WP_028613456.1\|2882242_2883433_-	2-methylaconitate cis-trans isomerase PrpF	NA	NA	NA	NA
WP_028613455.1\|2883580_2886169_-	Fe/S-dependent 2-methylisocitrate dehydratase AcnD	NA	NA	NA	NA
WP_028613454.1\|2886362_2887490_-	2-methylcitrate synthase	NA	NA	NA	NA
WP_016485912.1\|2887664_2888555_-	methylisocitrate lyase	NA	NA	NA	NA
WP_019470702.1\|2888551_2889268_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_019470703.1\|2889573_2890110_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA

DBSCAN-SWA_8

3957497 : 3965275

Planktothrix_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019471364.1\|3957497_3958307_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.0e-24	32.1
WP_019471365.1\|3958554_3959529_+	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	1.8e-36	32.9
WP_019471366.1\|3959540_3960065_+	HAD family hydrolase	A0A140XBD6	Dickeya_phage	2.4e-27	48.9
WP_019471367.1\|3960073_3960646_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_019471368.1\|3960632_3961157_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_003255132.1\|3961157_3961883_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.4e-23	26.5
WP_024717623.1\|3962059_3963553_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_016485037.1\|3963632_3963941_+	ribosome-associated translation inhibitor RaiA	A0A0M7QH33	Escherichia_phage	4.4e-05	34.1
WP_019471369.1\|3963953_3964418_+	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_019471370.1\|3964420_3965275_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.8e-08	31.0

DBSCAN-SWA_9

4654541 : 4709846

Tupanvirus(25.0%)

holin,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019470186.1\|4654541_4655042_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_019470187.1\|4655224_4656112_+	acyltransferase	NA	NA	NA	NA
WP_019470188.1\|4656355_4657705_+	amino acid permease	NA	NA	NA	NA
WP_019470189.1\|4657903_4658479_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_080956827.1\|4658678_4659455_+	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_016497631.1\|4659547_4660747_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	1.5e-13	28.7
WP_016484540.1\|4661018_4661876_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_012270121.1\|4661888_4662521_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_016497630.1\|4662663_4665678_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_016484537.1\|4665674_4666010_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_016484536.1\|4666024_4667275_-	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_016497629.1\|4667290_4668544_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	8.6e-100	52.7
WP_019470190.1\|4668883_4669924_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_019470191.1\|4670030_4671968_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_019470192.1\|4672154_4672457_-	cell division protein ZapA	NA	NA	NA	NA
WP_019470193.1\|4672453_4672684_-	hypothetical protein	NA	NA	NA	NA
WP_019470194.1\|4672960_4674586_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.0e-80	47.7
WP_019470195.1\|4674936_4675392_+\|transposase	transposase	NA	NA	NA	NA
WP_019470196.1\|4675605_4676706_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_019470197.1\|4677014_4678307_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_019470198.1\|4678389_4679226_-	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_016484524.1\|4680085_4680856_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_019470199.1\|4680866_4682099_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_019470200.1\|4682098_4684051_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_019470201.1\|4684227_4686288_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_019470202.1\|4686303_4686834_-	hypothetical protein	NA	NA	NA	NA
WP_019470203.1\|4686911_4687889_-	membrane dipeptidase	NA	NA	NA	NA
WP_019470204.1\|4688172_4688574_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_019471315.1\|4688701_4689646_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_019471314.1\|4689792_4690737_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_019471313.1\|4690844_4691729_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_019471312.1\|4691894_4692860_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_019471311.1\|4692870_4693344_+	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
WP_012270100.1\|4693598_4693856_+	hypothetical protein	NA	NA	NA	NA
WP_019471310.1\|4694063_4695731_-	ABC transporter ATP-binding protein/permease	NA	NA	NA	NA
WP_019471309.1\|4695727_4698511_-	insulinase family protein	NA	NA	NA	NA
WP_155412707.1\|4698537_4701369_-	TonB-dependent receptor	NA	NA	NA	NA
WP_155412708.1\|4701621_4702593_-	DUF4880 domain-containing protein	NA	NA	NA	NA
WP_019471306.1\|4702672_4703173_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_016497607.1\|4703364_4704471_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_019471305.1\|4704963_4706340_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_019471304.1\|4706793_4707741_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_016484510.1\|4707825_4708671_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_019471303.1\|4708667_4709846_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.1e-24	36.7

DBSCAN-SWA_10

5418195 : 5424486

Stx_converting_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016502036.1\|5418195_5418543_+	NirD/YgiW/YdeI family stress tolerance protein	A0A1I9LJU6	Stx_converting_phage	1.1e-09	38.9
WP_019472107.1\|5418624_5419869_-	MFS transporter	NA	NA	NA	NA
WP_019472108.1\|5419977_5420877_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	7.2e-08	26.2
WP_016502033.1\|5420953_5421727_+	ParA family protein	NA	NA	NA	NA
WP_016502032.1\|5421796_5422105_+	type II toxin-antitoxin system HigB family toxin	A0A0P0ZE17	Stx2-converting_phage	4.2e-16	47.4
WP_019472109.1\|5422094_5422451_+	transcriptional regulator	A0A222YXG1	Escherichia_phage	2.7e-30	59.8
WP_019472110.1\|5422454_5422889_-	thioredoxin TrxC	A0A0A7CHH9	Dinoroseobacter_phage	3.4e-11	34.7
WP_019473141.1\|5423025_5424486_-	YdiU family protein	A0A075BSJ0	Microcystis_phage	4.0e-64	37.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010979

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection