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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_022879 Enterococcus mundtii QU 25 plasmid pQY182, complete sequence 1 crisprs c2c10_CAS-V-U3,RT 0 1 0 0
NC_022883 Enterococcus mundtii QU 25 plasmid pQY082, complete sequence 0 crisprs RT 0 0 0 0
NC_022880 Enterococcus mundtii QU 25 plasmid pQY039, complete sequence 0 crisprs RT 0 0 0 0
NC_022884 Enterococcus mundtii QU 25 plasmid pQY024, complete sequence 0 crisprs NA 0 0 0 0
NC_022881 Enterococcus mundtii QU 25 plasmid pQY003, complete sequence 0 crisprs NA 0 0 0 0
NC_022878 Enterococcus mundtii QU 25, complete genome 4 crisprs cas14j,cas9,cas1,cas2,csn2,csa3,RT,DinG,cas3,DEDDh 0 1 8 0

Results visualization

1. NC_022879
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022879_1 76794-76894 TypeV-U3 NA
1 spacers
c2c10_CAS-V-U3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_022879_1 1.1|76830|29|NC_022879|CRISPRCasFinder 76830-76858 29 NC_022879 Enterococcus mundtii QU 25 plasmid pQY182, complete sequence 76830-76858 0 1.0
NC_022879_1 1.1|76830|29|NC_022879|CRISPRCasFinder 76830-76858 29 MK047642 Phage NG55, complete genome 14604-14632 6 0.793
NC_022879_1 1.1|76830|29|NC_022879|CRISPRCasFinder 76830-76858 29 NZ_CP016482 Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence 189235-189263 7 0.759
NC_022879_1 1.1|76830|29|NC_022879|CRISPRCasFinder 76830-76858 29 MH972261 Staphylococcus phage Pike, complete genome 16586-16614 7 0.759
NC_022879_1 1.1|76830|29|NC_022879|CRISPRCasFinder 76830-76858 29 MH972263 Staphylococcus phage JBug18, complete genome 16666-16694 7 0.759
NC_022879_1 1.1|76830|29|NC_022879|CRISPRCasFinder 76830-76858 29 NC_047813 Staphylococcus phage Andhra, complete genome 16675-16703 7 0.759
NC_022879_1 1.1|76830|29|NC_022879|CRISPRCasFinder 76830-76858 29 MK774614 Aeromonas phage CF8, complete genome 15694-15722 7 0.759
NC_022879_1 1.1|76830|29|NC_022879|CRISPRCasFinder 76830-76858 29 NC_047814 Staphylococcus phage St 134, complete genome 16511-16539 7 0.759
NC_022879_1 1.1|76830|29|NC_022879|CRISPRCasFinder 76830-76858 29 MH972262 Staphylococcus phage Pontiff, complete genome 16576-16604 7 0.759
NC_022879_1 1.1|76830|29|NC_022879|CRISPRCasFinder 76830-76858 29 NC_010480 Synechococcus sp. PCC 7002 plasmid pAQ6, complete sequence 112830-112858 7 0.759
NC_022879_1 1.1|76830|29|NC_022879|CRISPRCasFinder 76830-76858 29 NZ_CP016476 Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence 50512-50540 7 0.759
NC_022879_1 1.1|76830|29|NC_022879|CRISPRCasFinder 76830-76858 29 NZ_CP018030 Alteromonas mediterranea strain RG65 plasmid MRG65-300, complete sequence 97520-97548 7 0.759
NC_022879_1 1.1|76830|29|NC_022879|CRISPRCasFinder 76830-76858 29 MN855708 Bacteriophage sp. isolate 30, complete genome 1769-1797 7 0.759

1. spacer 1.1|76830|29|NC_022879|CRISPRCasFinder matches to NC_022879 (Enterococcus mundtii QU 25 plasmid pQY182, complete sequence) position: , mismatch: 0, identity: 1.0

ttttgtttgcctttatttttgatgttcgc	CRISPR spacer
ttttgtttgcctttatttttgatgttcgc	Protospacer
*****************************

2. spacer 1.1|76830|29|NC_022879|CRISPRCasFinder matches to MK047642 (Phage NG55, complete genome) position: , mismatch: 6, identity: 0.793

ttttgtttgcctttatttttgatgttcgc	CRISPR spacer
ctttgtttgcctttattttttatgtggta	Protospacer
.******************* ****    

3. spacer 1.1|76830|29|NC_022879|CRISPRCasFinder matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.759

ttttgtttgcctttatttttgatgttcgc	CRISPR spacer
ttttgtttgactttatttttgaggaatct	Protospacer
********* ************ *  . .

4. spacer 1.1|76830|29|NC_022879|CRISPRCasFinder matches to MH972261 (Staphylococcus phage Pike, complete genome) position: , mismatch: 7, identity: 0.759

ttttgtttgcctttatttttgatgttcgc	CRISPR spacer
aattgtttgcgtttatttttgatattaat	Protospacer
  ******** ************.** ..

5. spacer 1.1|76830|29|NC_022879|CRISPRCasFinder matches to MH972263 (Staphylococcus phage JBug18, complete genome) position: , mismatch: 7, identity: 0.759

ttttgtttgcctttatttttgatgttcgc	CRISPR spacer
aattgtttgcgtttatttttgatattaat	Protospacer
  ******** ************.** ..

6. spacer 1.1|76830|29|NC_022879|CRISPRCasFinder matches to NC_047813 (Staphylococcus phage Andhra, complete genome) position: , mismatch: 7, identity: 0.759

ttttgtttgcctttatttttgatgttcgc	CRISPR spacer
aattgtttgcatttatttttgatattaat	Protospacer
  ******** ************.** ..

7. spacer 1.1|76830|29|NC_022879|CRISPRCasFinder matches to MK774614 (Aeromonas phage CF8, complete genome) position: , mismatch: 7, identity: 0.759

ttttgtttgcctttatttttgatgttcgc	CRISPR spacer
cgttggttgcatttatttttgatgttgca	Protospacer
. *** **** ***************   

8. spacer 1.1|76830|29|NC_022879|CRISPRCasFinder matches to NC_047814 (Staphylococcus phage St 134, complete genome) position: , mismatch: 7, identity: 0.759

ttttgtttgcctttatttttgatgttcgc	CRISPR spacer
aattgtttgcgtttatttttgatattaat	Protospacer
  ******** ************.** ..

9. spacer 1.1|76830|29|NC_022879|CRISPRCasFinder matches to MH972262 (Staphylococcus phage Pontiff, complete genome) position: , mismatch: 7, identity: 0.759

ttttgtttgcctttatttttgatgttcgc	CRISPR spacer
aattgtttgcgtttatttttgatattaat	Protospacer
  ******** ************.** ..

10. spacer 1.1|76830|29|NC_022879|CRISPRCasFinder matches to NC_010480 (Synechococcus sp. PCC 7002 plasmid pAQ6, complete sequence) position: , mismatch: 7, identity: 0.759

ttttgtttgcctttatttttgatgttcgc	CRISPR spacer
ttttgtttgactttatttttgaggaatct	Protospacer
********* ************ *  . .

11. spacer 1.1|76830|29|NC_022879|CRISPRCasFinder matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.759

ttttgtttgcctttatttttgatgttcgc	CRISPR spacer
ttttgtttgactttatttttgaggaatct	Protospacer
********* ************ *  . .

12. spacer 1.1|76830|29|NC_022879|CRISPRCasFinder matches to NZ_CP018030 (Alteromonas mediterranea strain RG65 plasmid MRG65-300, complete sequence) position: , mismatch: 7, identity: 0.759

ttttgtttgcctttatttttgatgttcgc	CRISPR spacer
ttttgtttgattttatttttgatatctaa	Protospacer
********* .************.*... 

13. spacer 1.1|76830|29|NC_022879|CRISPRCasFinder matches to MN855708 (Bacteriophage sp. isolate 30, complete genome) position: , mismatch: 7, identity: 0.759

ttttgtttgcctttatttttgatgttcgc	CRISPR spacer
atttgtttacctttatttttgaagctata	Protospacer
 *******.************* *.*   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NC_022878
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022878_1 334157-334245 TypeII NA
1 spacers
csn2,cas2,cas1,cas9

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022878_2 663418-663535 TypeV NA
1 spacers
cas14j

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022878_3 821457-821531 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022878_4 1932713-1932795 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_022878_3 3.1|821480|29|NC_022878|CRISPRCasFinder 821480-821508 29 NZ_CP022523 Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence 257055-257083 7 0.759

1. spacer 3.1|821480|29|NC_022878|CRISPRCasFinder matches to NZ_CP022523 (Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence) position: , mismatch: 7, identity: 0.759

tgaagcgttagagttattgcgatggatgc	CRISPR spacer
ttgatgaatagaattattgcgatggatgc	Protospacer
* .*  . ****.****************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 806635 : 852594 67 Streptococcus_phage(27.27%) holin,capsid,head,integrase,plate,portal,tail,terminase,protease attL 806547:806564|attR 845198:845215
DBSCAN-SWA_2 1220299 : 1229331 9 Gordonia_phage(16.67%) NA NA
DBSCAN-SWA_3 1511146 : 1520514 11 Bacillus_phage(37.5%) transposase NA
DBSCAN-SWA_4 1832145 : 1840615 10 Streptococcus_phage(42.86%) holin NA
DBSCAN-SWA_5 2333100 : 2357318 27 Enterococcus_phage(33.33%) holin,capsid,plate,tail,terminase NA
DBSCAN-SWA_6 2367070 : 2373664 10 Enterococcus_phage(50.0%) NA NA
DBSCAN-SWA_7 2411276 : 2418363 8 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_8 2548025 : 2620211 82 Enterococcus_phage(33.33%) tRNA,capsid,transposase,integrase,plate,portal,tail,terminase attL 2556843:2556862|attR 2597575:2597594
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage