CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_023025	Cronobacter malonaticus plasmid p2, complete sequence	0 crisprs	csa3	0	0
NC_023032	Cronobacter malonaticus, complete sequence	17 crisprs	cas3,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	17	8
NC_023024	Cronobacter malonaticus plasmid p1, complete sequence	0 crisprs	WYL,csa3	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_023032_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023032_1

184357-184478

Orphan

Consensus_repeat	Method
CCCCTACAAAATATGCGGCCTGTGTAGGGCGGGTAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_023032_1

>merge|NC_023032|1|184357-184478|CRISPRCasFinder
CCCCTACAAAATATGCGGCCTGTGTAGGGCGGGTAAGCCTGCGCACCCGTCGGGGAGCAGATGGTGGATGCGCTGCGCTTATCTACCCCACAAAATATGCGGCCTGTGTAGGGCGGGTAAGC

>NC_023032|1|1|184357-184478|CRISPRCasFinder
CCCCTACAAAATATGCGGCCTGTGTAGGGCGGGTAAGC	CTGCGCACCCGTCGGGGAGCAGATGGTGGATGCGCTGCGCTTATCT
ACCCCACAAAATATGCGGCCTGTGTAGGGCGGGTAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_023032.1\|WP_007779139.1\|188376_189105_+\|cellulose-synthase-operon-protein-YhjQ	unknown	unknown	gnl\|CDD\|368976
NC_023032.1\|WP_023897799.1\|189101_191720_+\|UDP-forming-cellulose-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|236918
NC_023032.1\|WP_007779183.1\|173496_173928_+\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
NC_023032.1\|WP_004387626.1\|188176_188380_+\|YhjR-family-protein	unknown	unknown	gnl\|CDD\|371309
NC_023032.1\|WP_004387619.1\|180327_181347_+\|dipeptide-ABC-transporter-permease-DppB	unknown	unknown	gnl\|CDD\|182834
NC_023032.1\|WP_023897803.1\|195266_198770_+\|cellulose-biosynthesis-protein-BcsC	unknown	unknown	gnl\|CDD\|183140
NC_023032.1\|WP_007779176.1\|176834_177764_-\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|340389
NC_023032.1\|WP_007779161.1\|182270_183266_+\|dipeptide-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182906
NC_023032.1\|WP_007779131.1\|194169_195285_+\|cellulase	unknown	unknown	gnl\|CDD\|236844
NC_023032.1\|WP_071602978.1\|191730_194163_+\|cellulose-biosynthesis-cyclic-di-GMP-binding-regulatory-protein-BcsB	unknown	unknown	gnl\|CDD\|236851
NC_023032.1\|WP_007779181.1\|174139_175819_+\|kdo(2)-lipid-A-phosphoethanolamine-7''-transferase	unknown	unknown	gnl\|CDD\|183198
NC_023032.1\|WP_023897796.1\|184557_186243_-\|cellulose-biosynthesis-protein-BcsG	unknown	unknown	gnl\|CDD\|371656
NC_023032.1\|WP_007779140.1\|186429_188004_-\|cellulose-biosynthesis-protein-BcsE	unknown	unknown	gnl\|CDD\|371330
NC_023032.1\|WP_032968483.1\|176386_176845_-\|DUF1311-domain-containing-protein	unknown	unknown	gnl\|CDD\|377758
NC_023032.1\|WP_032968484.1\|172175_173378_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|273323
NC_023032.1\|WP_032968482.1\|178524_180132_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173858
NC_023032.1\|WP_007779123.1\|198926_200852_+\|sensor-domain-containing-phosphodiesterase	unknown	unknown	gnl\|CDD\|184143
NC_023032.1\|WP_007779144.1\|186235_186433_-\|cellulose-biosynthesis-protein-BcsF	unknown	unknown	gnl\|CDD\|371386
NC_023032.1\|WP_007779164.1\|181356_182259_+\|dipeptide-ABC-transporter-permease-DppC	unknown	unknown	gnl\|CDD\|182833
NC_023032.1\|WP_007779159.1\|183252_184266_+\|dipeptide-ABC-transporter-ATP-binding-subunit-DppF	unknown	unknown	gnl\|CDD\|236898

Protein	Function_ID	Function_description	E-value
NC_023032.1\|WP_007779139.1\|188376_189105_+\|cellulose-synthase-operon-protein-YhjQ	gnl\|CDD\|368976	pfam06564, CBP_BcsQ, Cellulose biosynthesis protein BcsQ. This is a family of bacterial proteins involved in cellulose biosynthesis. (Roemling U. and Galperin M.Y. "Bacterial cellulose biosynthesis. Diversity of operons and subunits" (manuscript in preparation)). A second component of the extracellular matrix of the multicellular morphotype (rdar) of Salmonella typhimurium and Escherichia coli is cellulose. The family does contain a P-loop sequence motif suggesting a nucleotide binding function, but this has not been confirmed.	3.55517e-127
NC_023032.1\|WP_023897799.1\|189101_191720_+\|UDP-forming-cellulose-synthase-catalytic-subunit	gnl\|CDD\|236918	PRK11498, bcsA, cellulose synthase catalytic subunit; Provisional.	0
NC_023032.1\|WP_007779183.1\|173496_173928_+\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	1.01474e-78
NC_023032.1\|WP_004387626.1\|188176_188380_+\|YhjR-family-protein	gnl\|CDD\|371309	pfam10945, CBP_BcsR, Cellulose biosynthesis protein BcsR. CBP_BcsR is a family of bacterial cellulose biosynthesis proteins. Cellulose is necessary for biofilm formation in bacteria. Roemling U. and Galperin M.Y. "Bacterial cellulose biosynthesis. Diversity of operons and subunits" (manuscript in preparation).	8.71146e-17
NC_023032.1\|WP_004387619.1\|180327_181347_+\|dipeptide-ABC-transporter-permease-DppB	gnl\|CDD\|182834	PRK10914, PRK10914, dipeptide ABC transporter permease DppB.	0
NC_023032.1\|WP_023897803.1\|195266_198770_+\|cellulose-biosynthesis-protein-BcsC	gnl\|CDD\|183140	PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional.	0
NC_023032.1\|WP_007779176.1\|176834_177764_-\|peptidoglycan-binding-protein	gnl\|CDD\|340389	cd16903, pesticin_lyz-like, pesticin C-terminal-like domain of uncharacterized proteins. This subfamily is composed of uncharacterized proteins containing a lysozyme-like domain similar to the C-terminal domain of pesticin. Some members also contain an EF hand domain. Pesticin (Pst) is an anti-bacterial toxin produced by Yersinia pestis that acts through uptake by the target related bacteria and the hydrolysis of peptidoglycan in the periplasm. Pst contains an N-terminal translocation domain, an intermediate receptor binding domain, and a phage-lysozyme like C-terminal activity domain. Bacteriocins such as pesticin are produced by gram-negative bacteria to attack related bacterial stains. Pst is transported to the periplasm via FyuA, an outer-membrane receptor of Y. pestis and E. coli, where it hydrolyzes peptidoglycan via the cleavage of N-acetylmuramic acid and C4 of N-acetylglucosamine. Disruption of the peptidoglycan layer renders the bacteria vulnerable to lysis via osmotic pressure. The pesticin C-terminal domain resembles the lysozyme-like family, which includes soluble lytic transglycosylases (SLT), goose egg-white lysozymes (GEWL), hen egg-white lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides.	2.30092e-54
NC_023032.1\|WP_007779161.1\|182270_183266_+\|dipeptide-ABC-transporter-ATP-binding-protein	gnl\|CDD\|182906	PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional.	0
NC_023032.1\|WP_007779131.1\|194169_195285_+\|cellulase	gnl\|CDD\|236844	PRK11097, PRK11097, cellulase.	0
NC_023032.1\|WP_071602978.1\|191730_194163_+\|cellulose-biosynthesis-cyclic-di-GMP-binding-regulatory-protein-BcsB	gnl\|CDD\|236851	PRK11114, PRK11114, cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB.	0
NC_023032.1\|WP_007779181.1\|174139_175819_+\|kdo(2)-lipid-A-phosphoethanolamine-7''-transferase	gnl\|CDD\|183198	PRK11560, PRK11560, kdo(2)-lipid A phosphoethanolamine 7''-transferase.	0
NC_023032.1\|WP_023897796.1\|184557_186243_-\|cellulose-biosynthesis-protein-BcsG	gnl\|CDD\|371656	pfam11658, CBP_BcsG, Cellulose biosynthesis protein BcsG. CBP_BcsG is a family of bacterial cellulose biosynthesis proteins. Cellulose is necessary for biofilm formation in bacteria. (Roemling U. and Galperin M.Y. "Bacterial cellulose biosynthesis. Diversity of operons and subunits" (manuscript in preparation)).	0
NC_023032.1\|WP_007779140.1\|186429_188004_-\|cellulose-biosynthesis-protein-BcsE	gnl\|CDD\|371330	pfam10995, CBP_GIL, GGDEF I-site like or GIL domain. The GIL domain, for GGDEF I-site like domain, is a c-di-GMP binding domain on the BcsE proteins of enterobacteria. It is not essentail for cellulose synthesis but is critical for maximal cellulose production. Cellulose production in enterobacteria is controlled by a two-tiered c-di-GMP-dependent system involving BcsE and the PilZ domain containing glycosyltransferase BcsA.	0
NC_023032.1\|WP_032968483.1\|176386_176845_-\|DUF1311-domain-containing-protein	gnl\|CDD\|377758	pfam07007, LprI, Lysozyme inhibitor LprI. This family consists of several bacterial proteins of around 120 residues in length. Members of this family contain four highly conserved cysteine residues. Family members include lipoprotein LprI from Mycobacterium, which binds to and inhibits macrophage lysozyme, which may aid bacterial survival.	4.26365e-08
NC_023032.1\|WP_032968484.1\|172175_173378_+\|MFS-transporter	gnl\|CDD\|273323	TIGR00890, Uncharacterized_MFS-type_transporter_YhjX, oxalate/formate antiporter family transporter. This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	5.68732e-123
NC_023032.1\|WP_032968482.1\|178524_180132_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173858	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NC_023032.1\|WP_007779123.1\|198926_200852_+\|sensor-domain-containing-phosphodiesterase	gnl\|CDD\|184143	PRK13561, PRK13561, putative diguanylate cyclase; Provisional.	0
NC_023032.1\|WP_007779144.1\|186235_186433_-\|cellulose-biosynthesis-protein-BcsF	gnl\|CDD\|371386	pfam11120, CBP_BcsF, Cellulose biosynthesis protein BcsF. CBP_BcsF is a family of bacterial cellulose biosynthesis proteins. Cellulose is necessary for biofilm formation in bacteria. (Roemling U. and Galperin M.Y. "Bacterial cellulose biosynthesis. Diversity of operons and subunits" (manuscript in preparation)).	1.46296e-20
NC_023032.1\|WP_007779164.1\|181356_182259_+\|dipeptide-ABC-transporter-permease-DppC	gnl\|CDD\|182833	PRK10913, PRK10913, dipeptide ABC transporter permease DppC.	0
NC_023032.1\|WP_007779159.1\|183252_184266_+\|dipeptide-ABC-transporter-ATP-binding-subunit-DppF	gnl\|CDD\|236898	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional.	0

>NC_023032.1|WP_007779159.1|183252_184266_+|dipeptide-ABC-transporter-ATP-binding-subunit-DppF
MSTHEATLQQPLLQAIDLKKHYPVKKGLFAPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLGRLLTMIETPTGGELYYQGQDLLKPDETAEKLRRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTRLSKEARREKALAMMAKVGLKTEHYDRYPHMFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQDMGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFSNPRHPYTQALLSATPRLNPDDRRERIKLTGELPSPLNPPPGCAFSARCRRRFGPCTQIQPQLKEYNGQLVACFAVDQDETGEPRIP
>NC_023032.1|WP_007779161.1|182270_183266_+|dipeptide-ABC-transporter-ATP-binding-protein
MALLNVDKLSVHFGDEGTPFRAVDRVSYSVNQGEVVGIVGESGSGKSVSSLAIMGLIDFPGRVMADKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNLVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALILITHDLALVAEAAHKIIVMYAGQVVETGEARDIFRAPRHPYTQALLRALPEFAQDKARLASLPGVVPGKYDRPTGCLLNPRCPYATERCRAEEPALNLVDNGRQSKCHYPLDDAGRPTNYEHA
>NC_023032.1|WP_007779164.1|181356_182259_+|dipeptide-ABC-transporter-permease-DppC
MTQITENKVVAAPVPMTPMQEFWHYFKRNKGAVVGLVYVVIMILIAVFANIVAPHNPAEQFRDALLAPPVWQDGGSWAHILGTDDVGRDVMSRLMYGARLSLLVGCLVVVLSLVMGIVLGLVAGYFGGIVDTIIMRIVDIMLALPSLLLALVLVAIFGPSIVNASLALTFVALPHYVRLTRAAVLVEVSRDYVTASRVAGAGAMRQMFVNIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ
>NC_023032.1|WP_004387619.1|180327_181347_+|dipeptide-ABC-transporter-permease-DppB
MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPLWEQYLHYIWGVLHGDLGLSLKSRLPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVQLNLTPVSGRVSDMVFLDDTNPLTGFMLIDTAIWGEEGNFIDALAHMILPAIVLGTIPLAVIVRMTRSAMLEVLGEDYIRTARAKGLTRMRVIIIHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRHKK
>NC_023032.1|WP_032968482.1|178524_180132_+|ABC-transporter-substrate-binding-protein
MSISLKKSGMLKFGLSLLAMTCAAGVQAKTLVYCSEGSPEGFNPQLFTSGTTYDASSVPIYNRLVEFKTGTTEIIPGLAEKWDVSEDGKTYTFHLRKGVKWQDNKDFKPTREFNADDVVFSFDRQKNDQNPYHKVSGGSYEYFEGMGLPTLISEVKKVDDNTVQFVLTRPEAPFLADMAMDFASILSKEYADNMLKAGTPEKVDLNPIGTGPFQLLQYQKDSRILYKAFPGFWGTKPKIDRLVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKQDKNINLMEQAGLNVGYLSFNTEKKPFDDVKVRQALTYAVNKDAIIKAVYQGAGVAAKNLIPPTMWGYNDDVKDYTYDVEKAKALLKEAGQDKGFTVELWAMPVQRPYNPNARRMAEMIQADWAKIGVQAKIVTYEWGEYLKRAKAGEHQAVMMGWTGDNGDPDNFFATLFSCDAAKDGSNYSRWCYKPFEDLIQPARATDDHNKRIELYKQAQVVMHDQAPALIVAHSTVYEPVRKEVKGYVVDPLGKHHFENVSVE
>NC_023032.1|WP_007779176.1|176834_177764_-|peptidoglycan-binding-protein
MKRNFHEPRVLRLQSSVGVCGVNYADDVKALQELMMKAGYQTATGRSLKVDGICNNETKEAIIWYQRLLTLSRSGLVQPFDQWFIEALKNASQPDWRPRITSGPLHVREAQFTFDNEGTDYITATNPFRPHPYPWFSRILHWPHSAASGVTLGRGYDMGNRSAGEIFATLRQAGIEEYKAILASKAAFLKGREAASFVKFYGPLFGEITHQQQLRLFEIAIQFYISEAKRIFNGRKARMMSAISWEKMRVRLKDIYIDSLYQGCESAGEFARLILLDDLKSVRLYLKTDRAQMNSHGRNLKRLQYINGL
>NC_023032.1|WP_032968483.1|176386_176845_-|DUF1311-domain-containing-protein
MGYKLVFFLPFLLIPTTCVAASSIIYGEAAKMCAKSADYAAGTRCLERQRKQTEQALQQTLAAALKQVQSEDWLEANADYEDEDSQIVVDTANALKNDQAAWEKHKVLFCQAASSQISAKTPNYWVLATQCEINMNKARIDELNALMAQVQP
>NC_023032.1|WP_007779181.1|174139_175819_+|kdo(2)-lipid-A-phosphoethanolamine-7''-transferase
MKYILSMTQQKLCILLAVYIGLFFNCAVLYRRFDGYAQNLSWINAVSMVVELAATVLVTFFLLRVLSLLGRRVWRVLASLVVLFSAAASYYMTFMNVVIGYGIIASVMTTDIDLSKEVVGWQFIVWMVLVCIVPLALIWGSRCRDTLLRQLRTRDQRLKSAAVVIVAGLLVWAPIRLLDLQQKNEERTSGVDMPSYGGVVANSYLPSNWLSALGLYAWAQVDESSDNKSLLNPAKKFTWQAPQGIDDTYVVFIIGETTRWDHMGLLGYDRNTTPKLAQEKNLAAFRGESCDTATKLSLRCMFVREGGADDNPQRTLKEQNVFAVLKQLGFSSDLYAMQSEMWFYSNTMADNIAYREQIGAEPRNRGKQVDDMLLVDEMKNSLVGHDKGKHLIILHTKGSHYNYVQRYPRSYARWQPECMGVDSDCSRQELINAYDNSVLYVDSFISDVIDQVRNKKAIVFYAADHGESINEKEHLHGTPRNVAPPEQFRVPMMVWMSDSYLADPQHAQAFAQLKLQAEQKRPHRHVELFDTIMGCLGYQSPDGGINQNNNWCHVPSAAK
>NC_023032.1|WP_007779183.1|173496_173928_+|organic-hydroperoxide-resistance-protein
MSLEKVVYRAKAKATGGRDGRATSDDGVLDVKLGVPKEMGGQGGQVTNPEQLFAAGYSACFLGALKHVASQEKKKVPQDAFIEGQVGIGPLPTGFGIEAQLDIHLPGMDRAEAEELVQKAHIVCPYSNATRGNIDVKLNVITD
>NC_023032.1|WP_032968484.1|172175_173378_+|MFS-transporter
MKTSIQPHTRWLTLVGTIVTQFALGSVYTWSLFNGALSQKLDEPVSQVAFSFGLLSLGLALSSSVAGKLQERFGVKRVTIASGVLLGLGLVLTSHASNLMMLWLSAGVLVGLADGAGYLLTLSNCVKWFPERKGLISAFSIGAYGLGSLGFKFIDSHLLASVGLERTFIIWGGMVMVMIIGGALLMKDALNQPARTGNNAGEGDYSLAESMRKPQYWMLALMFLTACMSGLYVIGVAKDIAQGMVRLDAATAANAVTVISIANLTGRLVLGILSDKMPRIRVITLGQMISLVGMAALLFAPLNEMTFFAAIACVAFNFGGTITVYPSLVSDFFGLNNLAKNYGVIYLGFGIGSICGSIIASLFGGFYVTFCVIFALLIVSLAISTTIRQPRREAWEHARA
>NC_023032.1|WP_023897796.1|184557_186243_-|cellulose-biosynthesis-protein-BcsG
MTNHVHSAPLARSGWQNWRGLSGWNYYFLLKFGLLWTGYLNFHPLANLVFMAFLLFPIPNLRLHRLRHWIAIPVGIGLFWHDTWLPGPQSIMSQGSQVAGFSTDYVLDLVTRFINWQMIGAAFVLLVAWMFLSQWVRVTVFVVAIMVWLNVLTVTGPVVSLWPAGNTAPATVTTTGGGAAPTVANAAGTVVAGDIPLQTAPASNQSINDWLNSFYTSESKRQTTFPASLPADAQPFDLLVINIGSLAWSDIDATGLMSHPLWSHFDIVFKNFNSGTSYSGPAAIRLLRASCGQPSHKNLYQPAGEQCYLFDNLAKLGFKRHLMMDHNGVFGNFLKEVRENGNMQEPLMDQSGLPVNLLSFDGSPVYDDAAVLNRWQQTVKGEGSSDRSATFFNLLPLHDGNHYPGNSKTADYKARAQKLFDELDAFLTQLEKENRKVMVVVVPEHGAALQGDKMQVSGLRDIPSPSITHVPVGIKFIGMKAPHQGSALEIDQPSSFLAISELVVRMLDGKNFVADNVDWQGLTSNLPQSAPVSENANAVVVQYQGKPWVRLSGGDWVPYPQ
>NC_023032.1|WP_007779144.1|186235_186433_-|cellulose-biosynthesis-protein-BcsF
MMSISDILQLIALCALIFIPLGYALCVGKRRMMKTLRPLLFRPRFVKPAGTLRRRSTIKANLKHD
>NC_023032.1|WP_007779140.1|186429_188004_-|cellulose-biosynthesis-protein-BcsE
MALVFSIGIDSLWDELRHISAGGTAWINCDRYSDAITFVNQTLVAQTPETKVAIITMDAAPESVIAPLPPAPQGPDEVRLFTMPKSQNALHRLHHDLLCSFEPEHYFIVLLCAENAWQGVAPAHIKAWIRKSQSWAQEYHCTLLIINSGAQADQQTSMLMTEYQQLSGLATLRYQGDAWLYDVAFWFNDKGVSARQQLPVTLINDRLSLVPRQEVSLQARSDERRVLSHIAVLEGAPPLSENWTLFEDNDALFNEARQAQAATVIFSLTQNNQIEGLARHVHALRRQRGSALKIIVRENKASVRATDERLLLGCGANMVIPWNAPLSRCLTLIESVQNQQFTRFVPEDVNMLLEAMQPLKMRGYQPWDIFCNAVGALMSNVLIPQDNKGILVALRPVPGIRVEQALTLCRPGRMGDIVTLGENRLVLFLSFCRITDLDTALSHIFPLPISELFSNRMVWHEDKQIAAEIMQMSAMRPEQWAAPLEMTRKASETAALLASTPKTVTRRVPTPVTLLNDTAQERAL
>NC_023032.1|WP_004387626.1|188176_188380_+|YhjR-family-protein
MPENDAKAARQPDRGYTFQNDFEALSRVFSLPDLDYTDISQREQLATAIARWPLLAELARRDAGAQG
>NC_023032.1|WP_007779139.1|188376_189105_+|cellulose-synthase-operon-protein-YhjQ
MTVLALQGVRGGVGTTSLTAALGWALYQLGETVLVIDASPDNLLRLSFNIDFDHADGWARALLDDKPWQSTAWRYAPGLDVLPYGALRQAERENDVTPALSAFAQHLQQLKASGQWRWILLDLPCGFDAVTRSLLQVADRTICVVQPDANCHARLHQQALPGGCDLLANFRLISSQIQNDIWQLWLQTQRNLVPVAVHRDEAMMESLAAKQPVGEYRPDSLVAEEIVTLANWCLLHYGSEGA
>NC_023032.1|WP_023897799.1|189101_191720_+|UDP-forming-cellulose-synthase-catalytic-subunit
MISLSALVLAPPVRARLRERYITYRRNGAPPFSAALGCFWLTLAWLFLPLENPRWQAIRAQHALLFPHIHPDRPRPLDTVRYLLQALWLVALRPWRAVGTPRWRPVSKVQVWRERFNLWLETLPQRFSDETHHLNEQKELGHINERLRRVVLGVVVIFSLVLALICVTQPFNPLSQFIFLLLLWGVALLVRRMPGRFSALMLIVLSLTVSCRYIWWRYTSTLNWNDPVSLVCGLVLLVAETYAWVVLVLGYFQVIWPLNRQPVPLPKDLKAWPSVDIFVPTYNEDLHVVKNTIYASLGIDWPKDKLKIWILDDGNREEFRRFAESVGVEYVARPTHEHAKAGNINNALKLAKGDFVSIFDCDHVPTRSFLQLTLGWFLKDKKLAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRGPLDEIGGIAVETVTEDAHTSLRLHRRGYTSAYMRIPQAAGLATESLSAHIGQRIRWARGMVQIFRLDNPLFGKGLKLGQRLCYVNAMLHFLSGVPRLIFLTAPLAFLLLHAYIIYAPALMIALFVLPHMAHASLTNSKIQGKYRHSFWSEIYETVLAWYITRPTMVALFNPHKGKFNVTAKGGLVEEEYVDWVISRPYLMLVLINLLGVLVGIWRYFYGPANEMLTVIVSIVWVFYNLIILGGAVAVSVESKQVRRSHRVEMVMPAAIAREDGHLFSCTVQDYSDGGLGIKVHGGAEWLQGQKVNLLMKRGAQEYVFPAKVVRVFGDEIGLNLDGLTTRQHIDFVQCTFARADTWALWQDSFPEDKPLESMLDILKLGFKGYRHLAEFAPASLKIVFRTLTTLVSWIVSFIPRRPERTALGERALPVMAQQ
>NC_023032.1|WP_071602978.1|191730_194163_+|cellulose-biosynthesis-cyclic-di-GMP-binding-regulatory-protein-BcsB
MKRKLSWMCAVAVGMSLLPGAYGAPEATNDPNATAAPTAPVVAPATEGVMTATPARTEALTPATPPVAGTEPAPATEGAVLGQVMPGVEGAGAPVVQDGAPTRDVTLSFASIAPPPGSMVLKGLNPDGFVEFGMRSDEIISKATLNLTYTPSPSLLPVQSQLKVYLNDELMDVLPVTKEQLGKKTTAQVPIDPLYVSDFNRVRLEFVGHYRDVCENQASNTLWMDIGRNSALNLTFQTLQLQNDLSHFPVPFFDSRDNRPLELPMVFAAAPDLATQQAASIVSSWFGSRSGWRGQRFPVLYNALPTRHAVVFATNDKRPDFLRDLPPAKGPMVRMMSHPQSPWVKLLVIEGRDDKDLLQAAKGIAQGSLLFRGDSVEVGEVKPLLARQPYDAPNWVRTDRAVTFGELKGYEEQLQATGLEPNPISLTLNLPPDLYLLRSNGIDMRLNYRYTSPATRDNSRMDISLNNQFLQSFNLLPKDETNRLLLRLPLLQGLLDGKTEVTLPTLRLGAANQLRFDFAYTNPLPGGTLDNCVTFQTVPNRVVIGDDSTLDFSNYHHFMAMPDLRSFANSGFPFSRMADLSDTLIVMPKQPNPAQLTTLLDTAGTIGAQTGFPAVNLTITNEGGDMQKKDADILVIGALPASLKDEKRIDMLVNATQSWVKTPTRDVTLIDTDNRDRQPQMQTEITSSGPMAAVVGFQSPYHDQRSVVALLADSPRGYELLNDALNDSGKRAAMYGSVSIIRESGVNSLRVGDVYYVGHLPWFDRIWYALSNHPILLAIFAAISVVLLAWVLWRLLRILSRRRLDPGNHE
>NC_023032.1|WP_007779131.1|194169_195285_+|cellulase
MKNLCRWLAAGLLLATVSAHATCGWADWDRFKGGYISEEGRVIDPSDPRKITTSEGQSYALFFALAANDREAFDNILQWTENNLAQGSLKNTLPAWLWGMKGPDEWTVLDTNSASDADLWIAWSLLEAGRLWKEPRYSDTGKALLDRIGKEEVVNVPELGDMLLPGKVSFAEPTLWRFNPSYMPPQLARYFTRYGKPWTTIRDTNLRLLLETAPQGFSPDWVSYEAKKGWVMKPAAPQKPLIGSYDAIRVYLWVGMMNPADEQQAPLLKKLSPMETATIKAGVPPEKVRVTDGKTQGNGPVGFSAALLPFLQNRDIQALQRQRVVDNYPQQDAYFSYVLTLFGQGWDEHRFRFTVDGELQPTWGESCTSSR
>NC_023032.1|WP_023897803.1|195266_198770_+|cellulose-biosynthesis-protein-BcsC
MHKFALSITALALGVALSGQAQAQPDIRQQLLEQVRLGETAKRDDLVRQSLYRLELMNPDDPDFIAAKMRYLLRQGDNAGAQQQFARLGKLAPQSSAYQQARITLALASPEGRQQLQQARLLGTTGHTQEALAAYQKLFNGAPPDGDLAVEYWALVAKDPAQRDEAIRQMQALDARAPGNDQLRTQLALQLFSANRQQEGFSVLEQMAKSGSGRETAADLWYQQIQGMPASDDSVAALERFLQVFSSGETADKAKGLLAEQQTKLADPAYRARMQGIARVEEGQGAKAISELTTAVKANPNDSEALGALAQAYSQQGNRARAVPLLEQALKEDPNSPNSGRWQSLLQVNRYWLLIQQGDAALKANNLALAQQKYQQAATVDNTDSYAVLGLGDVAVAKKDDAAAERYYRQALRMDNTNSNAVRGLANLYRRQSPERAEAFIATLSASQRRSIDDIERSMTNDRLEQQAAALEAEGRFADAAAVQRQRLALDPDSVWITYRLASDLASAGQRRDADTVMGQLAQRKPGDPEQVYAYGLYLSGSDRQRAALSHLNTLARDKWTPNILELSQRLQTNELMETANRLRDSGEEAQAIALLRQQPVSDRIDLTLADWAQQRGDNATARAQYQTVLTRSPASEEARLGLAEVLIAQGDNAAAREQLAALQTPAAGGEPRSPGTQRRIANAEAALGDTARAQQAFAVLAATAKTQPPSQESALVLRDAARFQRQNGQPQQALQTYRDAMVASGITPTRPGDNDAFTRLTRNDASDDWLKRSVRGDAADLYRQQDLNVTLQHDYWGSSGTPGYSDLKANTTMLQVDAPLRDGRLFLRTDAVNMNPGSFSGNSYSETWGTCAETPCSGNAKQRASGVSVAAGWRNDTWDMDIGTTPIGFDVVDVVGGLSYSSDLGPIGYTLNAHRRPISSSMLAFGGQRDAPSNTGTTWGGVRATGGGASLSYDRGEAHGVWASLNADQLTGKNVADNWRVRWMSGYYYKLINENNQRLTIGLNNMVWHYEKDLSGYSLGQGGYYSPQEYVSFAVPVAWRMRTENWSWELGASGSWSHSRTKTERRYPLSGLIPTPVINTQNPALSRYADKDALEEGSSSNGWGYTANALIERRITSNWSVGAAIDIQQAKDYTPSNFSLFIRYSQGGWQGDMDMPPQTLTPYADR
>NC_023032.1|WP_007779123.1|198926_200852_+|sensor-domain-containing-phosphodiesterase
MAMVSAVSVFFLFIFSVVLLFHFVQSHRYHTAMQMESIARSVRQPLSAAILKANIPEAEAILRQIKPAGVISRADVVLPNQFQALRMRFTPERPIPVTLARVFELPVQISLPLYSLERPANPQPLAYLVLQADSWRMYRFIINAISTLLTTFLLLALILSVAITWCINRLILHPLRDITRTLNALDAHELAHHQLAIPRLHKDDEIGMLVRTYNRNQQALAQQLDEARTSGTRFPLTGLPNQALLVALLEQAVAGGGATALLYVACEPLREVDESQREALLLARVDKLRSVLTPRMVLAQISQDDFAIIAHGVKTPEHAVTLTQQLLAALNEPSESDSGAPACAASIGVAMFDGRQSASTLYQSAISAALDARRSGVNQVAFFGESPVSAQESAMQNALARRQYAVWLQPQVDMRNGNIVGAEALLRERQPDGEWSLPVGLIDNIESSGLIVTVGDWVLEEACQILARWQAHGIMLPLSVNVSSLQLLKRDLVQTMLQRLERYAIKPGTLILEMTESQRIDDTEAAIAILRPLREAGVRIALDDFGMGYSSLSQLQKMKALPVDSLKIDKSFIDSLPDDDSVVSAIISMAKKLNLELVAEGIQNEAQRDWLLNAGVTVGQGYLFGKAATPAAFEDGWLAKP

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Crispr_ID: NC_023032_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023032_2

237091-237203

Orphan

Consensus_repeat	Method
TGTAGGGTGGGTAAGCGCAGCGCACCCACCGTATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_023032_2

>merge|NC_023032|2|237091-237203|CRISPRCasFinder
TGTAGGGTGGGTAAGCGCAGCGCACCCACCGTATCAACCCAACGCCCTACAGCTGGTCTGGATGTGGGGATGTGGTTTTGTAGGGTGGGTAAGCGTAGCGCACCCACCGTATC

>NC_023032|2|2|237091-237203|CRISPRCasFinder
TGTAGGGTGGGTAAGCGCAGCGCACCCACCGTATC	AACCCAACGCCCTACAGCTGGTCTGGATGTGGGGATGTGGTTT
TGTAGGGTGGGTAAGCGTAGCGCACCCACCGTATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_023032.1\|WP_004384836.1\|239532_240159_-\|lysoplasmalogenase	unknown	unknown	gnl\|CDD\|226237
NC_023032.1\|WP_007778960.1\|234173_235157_+\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270389
NC_023032.1\|WP_023897826.1\|237208_239425_-\|Zn(II)/Cd(II)/Pb(II)-translocating-P-type-ATPase-ZntA	unknown	unknown	gnl\|CDD\|236827
NC_023032.1\|WP_007778959.1\|235205_235715_+\|TRAP-transporter-small-permease	unknown	unknown	gnl\|CDD\|225632
NC_023032.1\|WP_023897828.1\|244176_245247_+\|cell-division-protein-FtsX	unknown	unknown	gnl\|CDD\|182910
NC_023032.1\|WP_007778937.1\|241164_241761_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase	unknown	unknown	gnl\|CDD\|236793
NC_023032.1\|WP_004384844.1\|245508_246366_+\|RNA-polymerase-sigma-factor-RpoH	unknown	unknown	gnl\|CDD\|235838
NC_023032.1\|WP_023897827.1\|241950_243528_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NC_023032.1\|WP_007765151.1\|232237_232795_-\|DcrB-family-lipoprotein	unknown	unknown	gnl\|CDD\|183232
NC_023032.1\|WP_004384842.1\|243530_244199_+\|cell-division-ATP-binding-protein-FtsE	unknown	unknown	gnl\|CDD\|182829
NC_023032.1\|WP_032968459.1\|229795_230860_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|183405
NC_023032.1\|WP_023897820.1\|227571_228987_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NC_023032.1\|WP_023897825.1\|235726_237013_+\|TRAP-transporter-large-permease	unknown	unknown	gnl\|CDD\|224509
NC_023032.1\|WP_032983074.1\|231007_232198_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|235348
NC_023032.1\|WP_007778962.1\|232868_233534_-\|7-cyano-7-deazaguanine/7-aminomethyl-7--deazaguanine-transporter	unknown	unknown	gnl\|CDD\|183041
NC_023032.1\|WP_004386827.1\|233740_233986_+\|sulfurtransferase-TusA	unknown	unknown	gnl\|CDD\|178967
NC_023032.1\|WP_023897821.1\|229281_229791_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|236773
NC_023032.1\|WP_179944220.1\|246414_247908_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|224089
NC_023032.1\|WP_007778938.1\|240299_240665_+\|DUF2500-domain-containing-protein	unknown	unknown	gnl\|CDD\|378475
NC_023032.1\|WP_004384839.1\|240905_241175_-\|DUF1145-family-protein	unknown	unknown	gnl\|CDD\|182831

Protein	Function_ID	Function_description	E-value
NC_023032.1\|WP_004384836.1\|239532_240159_-\|lysoplasmalogenase	gnl\|CDD\|226237	COG3714, COG3714, Predicted membrane protein [Function unknown].	5.74412e-48
NC_023032.1\|WP_007778960.1\|234173_235157_+\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270389	cd13671, PBP2_TRAP_SBP_like_3, Uncharacterized substrate-binding protein of the Tripartite ATP-independent Periplasmic transporter family; the type 2 periplasmic-binding protein fold. This subfamily includes uncharacterized periplasmic substrate-binding proteins similar to TRAP transport systems such as SiaP (a sialic acid binding virulence factor) and TeaA (an ectoine binding protein). TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.26739e-144
NC_023032.1\|WP_023897826.1\|237208_239425_-\|Zn(II)/Cd(II)/Pb(II)-translocating-P-type-ATPase-ZntA	gnl\|CDD\|236827	PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase; Provisional.	0
NC_023032.1\|WP_007778959.1\|235205_235715_+\|TRAP-transporter-small-permease	gnl\|CDD\|225632	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism].	5.11002e-30
NC_023032.1\|WP_023897828.1\|244176_245247_+\|cell-division-protein-FtsX	gnl\|CDD\|182910	PRK11026, ftsX, cell division ABC transporter subunit FtsX; Provisional.	0
NC_023032.1\|WP_007778937.1\|241164_241761_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase	gnl\|CDD\|236793	PRK10909, rsmD, 16S rRNA m(2)G966-methyltransferase; Provisional.	2.06693e-147
NC_023032.1\|WP_004384844.1\|245508_246366_+\|RNA-polymerase-sigma-factor-RpoH	gnl\|CDD\|235838	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed.	0
NC_023032.1\|WP_023897827.1\|241950_243528_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0
NC_023032.1\|WP_007765151.1\|232237_232795_-\|DcrB-family-lipoprotein	gnl\|CDD\|183232	PRK11615, PRK11615, hypothetical protein; Provisional.	1.00457e-108
NC_023032.1\|WP_004384842.1\|243530_244199_+\|cell-division-ATP-binding-protein-FtsE	gnl\|CDD\|182829	PRK10908, PRK10908, cell division ATP-binding protein FtsE.	9.09061e-165
NC_023032.1\|WP_032968459.1\|229795_230860_-\|AI-2E-family-transporter	gnl\|CDD\|183405	PRK12287, tqsA, pheromone autoinducer 2 transporter; Reviewed.	1.13936e-109
NC_023032.1\|WP_023897820.1\|227571_228987_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.32352e-92
NC_023032.1\|WP_023897825.1\|235726_237013_+\|TRAP-transporter-large-permease	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	3.57612e-141
NC_023032.1\|WP_032983074.1\|231007_232198_+\|MFS-transporter	gnl\|CDD\|235348	PRK05122, PRK05122, major facilitator superfamily transporter; Provisional.	4.09303e-173
NC_023032.1\|WP_007778962.1\|232868_233534_-\|7-cyano-7-deazaguanine/7-aminomethyl-7--deazaguanine-transporter	gnl\|CDD\|183041	PRK11212, PRK11212, 7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter.	1.8059e-137
NC_023032.1\|WP_004386827.1\|233740_233986_+\|sulfurtransferase-TusA	gnl\|CDD\|178967	PRK00299, PRK00299, sulfurtransferase TusA.	2.50382e-55
NC_023032.1\|WP_023897821.1\|229281_229791_+\|C40-family-peptidase	gnl\|CDD\|236773	PRK10838, spr, bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase.	1.45524e-50
NC_023032.1\|WP_179944220.1\|246414_247908_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.22128e-137
NC_023032.1\|WP_007778938.1\|240299_240665_+\|DUF2500-domain-containing-protein	gnl\|CDD\|378475	pfam10694, DUF2500, Protein of unknown function (DUF2500). The members of this family are largely confined to the Gammaproteobacteria. The function is not known.	8.33028e-34
NC_023032.1\|WP_004384839.1\|240905_241175_-\|DUF1145-family-protein	gnl\|CDD\|182831	PRK10910, PRK10910, DUF1145 family protein.	2.80011e-45

>NC_023032.1|WP_023897825.1|235726_237013_+|TRAP-transporter-large-permease
MDAFILLATLAVLLALGMPVAFAVGLSAIVGALWIDLPLEALMIQITSGVNKFTLLAIPFFILAGAIMAEGGIARRLVNFAYLFVGFIRGGLSLVNIVASTFFGAISGSSVADTASIGSVMIPEMEKKGYPREYAAAVTASGSVQAILIPPSHNSVIYSLAAGGTVSIATLFIAGVLPGLLLGLSLMVLCIAFARRRGYPKGERIPLRQALKIFIDALWGLITVVIILGGILTGVFTATESAAVACLWAFFVTMFIYRDYKWSELPKLMFRTVKTVTIVMILIGFAAAFGAVMTYMQLPTRITEFFTTLSDNRYVILMYLNIMLLLIGTLMDMAPIILILTPVLLPVANQLGIDPVHFGMIMMVNLGIGLITPPVGSVLFVASAVSKQNIETVVRAMLPFYGVLLIVLAMVTYIPAISLWLPRVLGMM
>NC_023032.1|WP_007778959.1|235205_235715_+|TRAP-transporter-small-permease
MSRFFLVWMDRLYLLAMMVAGVALLIMTVVIPIGIFSRYVLNRGESWPEPVAIICMVTFTFIGAAVGYRAGSHIAVNMLTDRLPPFAQRVCARVVDLLMLIISLVMFYYSALLCMELWEQPVAEFPVLTSGESYLPLPIGSAVMILFVIERLLWGSQENRPVVLIGNHS
>NC_023032.1|WP_007778960.1|234173_235157_+|TRAP-transporter-substrate-binding-protein
MKKRFIPALAGLCLSTASLLFAPALHAQVIKAADVHPQGYPNVVAVQNMGEKLKQQTNGELEIKTFPGGVLGDEKQMIEQAQMGAIDMIRVSMAPVAAILPEIEVFTLPYVFRDEDHMHKVIDGDIGKQIGDKLTSNPKSRLVFLGWMDSGTRNLITKNPVVKPDDLKGMKIRVQGSPVAIGTLKAMGANAVAMGVSEVYSGLQTGVIDGAENNPPTYIAHNYLPVAKHYTLSGHFIIPEMLLYSKVKWDKLKPEQQQKILTLAREAQMEQRELWNAYNKQALDKMKAGGVQFHEIDKAYFVNATAPVRDQYGAKHQDLMKAIADVK
>NC_023032.1|WP_004386827.1|233740_233986_+|sulfurtransferase-TusA
MTDLFANPDHTLDALGLRCPEPVMMVRKTVRNMQPGETLLIVADDPATTRDIPGFCRFMEHELVASQTETLPYRYLLRKNQ
>NC_023032.1|WP_007778962.1|232868_233534_-|7-cyano-7-deazaguanine/7-aminomethyl-7--deazaguanine-transporter
MTSFTPGQRRNALVWLSLFHLLVITSSNYLVQLPVSIFGFHTTWGAFSFPFIFLATDLTVRIFGAPLARRIIFAVMMPALLVSYVISSLFYMGSWQGFGALSHFNLFVARIATASFMAYALGQILDVHVFNRLRQSPHWWLAPGASLLLGNVSDTLSFFFIAFWRSPDPFMAEHWMEIALVDYTFKVLISLVFFLPMYGVLLNMLLKKLADKSDFHVLQRG
>NC_023032.1|WP_007765151.1|232237_232795_-|DcrB-family-lipoprotein
MRNLVKYVGIGLLVMGLAACDNKDSNAPASAGASQSEASGQPVSLLDGKLSFSLPADMTDQSGKVGTQANNMHVYSDQTGQKAVIVIVGEKSQESLEVLAKRLEDQQRARDPQLQVVTNKAIEIKGQKMQQLDTVISAKGQTAYSSVVLGNVDDKLLTLQITLPADNQQQAQSTAENIINTIVVK
>NC_023032.1|WP_032983074.1|231007_232198_+|MFS-transporter
MPDVSADPALSGLRLNLKIVSIVIFNFATFLTIGLPLAVLPGYVHDVMGFSPFWAGLVISLQYIATLISRPHAGRYADLWGPKTVVIVGMSGCLLSGASYFLAWWGGGAPLLSLALLCLGRVVLGFGQSCAGTGSTLWGVGVVGSTHIGKVISWNGVVTYGAMAVGAPLGALLYRHGGLPLVAGVIMGVALLGIVLALPRPAVKASKGKPLPFRAVLGKVWPFGMALALTTSGFGVIATFITLFYQAKGWDGAAFALTLFSGAFVGTRLLFPNAINRLGGINVTLICGVVETVGLLMVGLAVEPWMAKAGTFLAGAGFSLVFPALGVVAVKAVPQSNQGAALATYTLFMDLSLGITGPAAGVLMAWAGVPAIYLAAAGLVLLAILLSVQLKKRPAP
>NC_023032.1|WP_032968459.1|229795_230860_-|AI-2E-family-transporter
MIGPQRPQPQQDKVGLHMLQKLAALVIILAGIHAAADMIVPLLLALFLAIVLNPLVTWFMRRGFRRPVAITIVVFVMLIGLTLLLGVLAASFNEFVALMPKYNKELTRKLLHLQEMVPFMHLHLSPERMLQRMDSDKMMTFATTLMTQLSGAMASVVLLVMTVVFMLFEVRHVPYKLRFALSNPQLHIAGLHRALKGVSHYLALKTLISLWTGVIIWLGLTLLDIQFALMWGVLGFLLNYIPNIGAVLSAIPPMIQALLFNGVYEVVMVGLLFSLVHMILGNIVEPRMMGHRLGMSTMVVFLSLLFWGWLLGPVGMLLSVPLTSVCKIWMETTHGGSKLAVLLGPGRPKTRLPG
>NC_023032.1|WP_023897821.1|229281_229791_+|C40-family-peptidase
MRLLMMFFYFTSLLAAPAFSAALPASWHYYDSSQDISYRFKHDAPPETLLKSALLNRYISWKGTRYHFGGTTHRGVDCSALMQHLFAESASVSLPRTTSQQLKKGKAVRKTALQPGDLVFFSTGPRQRHVGVYIGDNQFIHASKEKGVTISSLTNDYWRARYLAARRVV
>NC_023032.1|WP_023897820.1|227571_228987_-|glutamine-synthetase
MFSFALTPWFKPLSPTAAPSGQEPIMFSTLLNTWMLAGTAHGTPVSFRQEADAYLREYPHTRHVDIYLHDLNGCRRGKRISADSLRSLAQGCYFPLSVYAMDMEGHVVESALAQREPDRLCLPVSGTLRPCASDPAHHAQLLLAMQEPDGAGCALEPRVVLERLLAQFHARGIYPVIAPEVEFYLQAVDGAPPTSRCFDIDMPGRDSALLEAMETEARRQGLPLCGIVAEAEAGQFELNFNHTPRVVEMCDRVLAARRLVHQVAEKKGYLASFMAKPRAELAGSGLHVHISLNDAQGNNLFAGDTDTPNVMMRRSLSGLLALMPASVALVTPGANAFRRLRKSLNEPLFSSWGYNDRSAALRLPCADPARQRIEYRLASADANPYLVAAAALAGILYGLDHPLTLPEAGASADLPALPLFWPDALARFQEAEWLRQQLGAPFSDAWLACKCQELARFESEVTDAEKRAHHH
>NC_023032.1|WP_023897826.1|237208_239425_-|Zn(II)/Cd(II)/Pb(II)-translocating-P-type-ATPase-ZntA
MRTPSEKPHATPQFAKMTPISAPQKPAISKAACCESDACENPPPVQEVAGALCWQVAGMDCAACARKVENAVRQVPEVRQVQVLFATEKLVVDAPASQRDAIEQAVRAAGYTLREANTAAPAAPSGLRENLPIIAIAIFMALSWALEQVYPLAGRIAFTITTLVGLFPVARQAWRLIRSGNPFAIETLMSVAATGALIIGASEEAAMVLLLFLVGERLEGWAANRARSGVSALVALRPETAVRLRGDARETVAISDLQPGDVIEVAAGGRLPADGKLLAAAASFDESALTGESLPVERQPGEKVPAGATSVDRLVSFEVTSRPGDSAIDRILHLIEEAESKRAPIERFIDRFSRIYTPVIMAAALLTALIPPLLFAAPWLPWIYKALALLLIGCPCALVISTPAAITSGLAAATRFGALIKGGAALEALGRVEQIAFDKTGTLTAGTPQVTAVDPVDGLEAEALLAYAAAVEQGSTHPLAQAVVREANARGVATLRAGAQRTLAGAGVEAQVEGRLLRISAPDKVTIELPADWQARIREQEAQGQTVIVVTASDRLLGTLALRDTQRADARDAVEKLRALGVGSVMLTGDNPRAAAAIAAELGMEYRAGLLPADKVAAVNELNARTPLAVVGDGINDAPAMKAATIGIAMGSGTDVALEAADAALTHNRLAALPEMIALARDTHRNIRQNIAIALGLKAVFLVTTLLGLTGLWLAVLADTGATVLVTANALRLLRKRG
>NC_023032.1|WP_004384836.1|239532_240159_-|lysoplasmalogenase
MLWSFIAVFLSGWLYVDASYRGATWQRWIFKPLTLLLLLLLGWQAPLASPTGYLVLAGLVATLAGDALTLLPRQQLLYAFGAFFLSHLLYTVWFASQMTLSFFWPLPLALLVIGAALIATIWTRLGDLRWPICTYIGMTLVMVWLAGELYFFRPTDTSFSGFVGAVLLLLNAVVWLGSHYRKRFTADSAIAAACYFAGHFMIVRSLYL
>NC_023032.1|WP_007778938.1|240299_240665_+|DUF2500-domain-containing-protein
MSKPPLFFIIIIALIVAAASFRYVQQRREKTENDAAPVTQQNVVVVSKREKPVNGRRSREQQVAPPAQTVRYEATFRPQEGGAEMRFRLDEAHYHQLTVGDEGQLVYQGTRFLEFVPAPAR
>NC_023032.1|WP_004384839.1|240905_241175_-|DUF1145-family-protein
MLINLGRLLMLGVWGFLLLNLIQPFPRPLNIFVNVALFFMIIMHILQLSLLRATQPKDAPPLSRFQQARIFIFGVFELIAWQKNQKKPR
>NC_023032.1|WP_007778937.1|241164_241761_-|16S-rRNA-(guanine(966)-N(2))-methyltransferase
MKKPTSSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPYLVGARCLDCFAGSGALGLEALSRYAADATLLEMERGVAQQLQKNLATLKSSAAKVVNTNTLNFLSQHGEPHDIVFVDPPFRKGLLEETLNLLETRGWLAPQALIYVESEVENGLPPVPASWQLHREKVAGQVAYRLYLRESQGEQNAD
>NC_023032.1|WP_023897827.1|241950_243528_+|signal-recognition-particle-docking-protein-FtsY
MAKEKKRGFFSWLGFGQKEQAETEAEQQEQQATEQPAATEARVEPDSQTQTAAQETTHSLAESEKFADDVVAVSESVVHEEKEAAQPETIETPVQPEPEPEAVKPTAAQAEEWLPEQEENRAPVALAPEFVAEPQPEAAPDTIVEEDVIEETAAIEEPVVEEAAVEPAVEAPHDEDETAQDAPISEEELIALAADPEAALEAEPEEEETAPVAEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVDTTRKIIANLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKTPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDENAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDFIEALFARED
>NC_023032.1|WP_004384842.1|243530_244199_+|cell-division-ATP-binding-protein-FtsE
MIRFEHVSKAYLGGRQALQGVTFHLRPGEMSFLTGHSGAGKSTLLKLICGIERPSAGKIWFGGHEISRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGEDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDTGLISRRSYPVLTLSEGHLHGGRVGE
>NC_023032.1|WP_023897828.1|244176_245247_+|cell-division-protein-FtsX
MEAVLVNKRDALNEIRRFSNKLDNFRKQRSSGETGRPVQKRNKGSNTKGKSRQGGINEQVRYAWQGALADLKSKPLATFLTVMVIAISLTLPSVCYMVYKNVSEAATQYYPSPQITVYLDKTLDDSAAQQVVGQLQAEPGVAKVNYLSRDEALGEFRNWSGFGGALDMLEENPLPAVVVVEPKLDFQSSEALNTLRDRVAKLQGVDEVRMDDSWFARLSALTGLVGRVAAMIGVLMVAAVFLVIGNSVRLSIFARRDTINVQKLIGATDGFILRPFLYGGALLGFTGALLSLILSEILVMRLSAAVTDVAKVFGTTFEISGLSFDECLLLLLVCSMIGWAAAWLATVQHLRHFTPE
>NC_023032.1|WP_004384844.1|245508_246366_+|RNA-polymerase-sigma-factor-RpoH
MTKEMQTLALAPVGNLDSYIRAANAWPMLSADEERALAEKLHYQGDLEAAKKLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARELGVSSKDVREMESRMAAQDMTFDMSPDDDAGDSQPMAPVLFLQDKSSNFADGIEDDNWEEHAADKLTDAMQGLDERSQQIIRARWLDEDNKSTLQELANRYGVSAERVRQLEKNAMKKLRAAIEA
>NC_023032.1|WP_179944220.1|246414_247908_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MHSLVSDLLLLRLGEQRDERLHKRLYNALRLTILDGSLPAQSRLPASRDLAQQLGLSRNTVLTVYEQLLAEGYVTSRAGSGTFVAGMLPDSLLSAPPVAQGQHDRVAHAGFSSRGKTLLGQVSASPKQWGAFIPGVPDVHAFPHQLFSKIQARISRRPSPQRLTYSCQGGTPELQRALVDYLRVSRSVHCSADQVLITEGIHQAIDLVARMLCDRGDTAWVEEPSYWGIRHVLQMNEVNITPVMVDRAGMVPPESAGTPPRLIFVTPSHQYPLGAVMSLERRQRLLTLARQTGSWIVEDDYDSEFRFSGQPIPALQGLVADPPVIYIGTFSKTLYPGLRIGYVVLPRALAYEMKTAHAELYRGGHSIIQAALAEFIEAGHYSAHIRRMRLLYGRRRACLTTLITRYLGPEALSDFSDNAGLHLVLNLPDDADDVEIARLANARDILVRPLSRYYLTENRRRGLLMGFACVAEEKMEGAFKALLACIEAAYPALLRRA

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Crispr_ID: NC_023032_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023032_3

259108-259224

Orphan

Consensus_repeat	Method
CTACAAAGCGCCAGAAATCGTACCGCTGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_023032_3

>merge|NC_023032|3|259108-259224|CRISPRCasFinder
CTACAAAGCGCCAGAAATCGTACCGCTGGTGGTGGGTTGGCGCGGTGGGTGCCGTTTCGAACGGCGGGTGCGCTTCGCTTACCCGCTCTACAAAGCACCAGAAATCGTACCGCTGGT

>NC_023032|3|3|259108-259224|CRISPRCasFinder
CTACAAAGCGCCAGAAATCGTACCGCTGGT	GGTGGGTTGGCGCGGTGGGTGCCGTTTCGAACGGCGGGTGCGCTTCGCTTACCCGCT
CTACAAAGCACCAGAAATCGTACCGCTGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_023032.1\|WP_023897835.1\|259353_260241_+\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpA	unknown	unknown	gnl\|CDD\|182550
NC_023032.1\|WP_004384851.1\|253782_254709_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH	unknown	unknown	gnl\|CDD\|182689
NC_023032.1\|WP_004388011.1\|267418_268114_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NC_023032.1\|WP_007797171.1\|254705_255986_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM	unknown	unknown	gnl\|CDD\|236896
NC_023032.1\|WP_007778906.1\|256751_257465_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivF	unknown	unknown	gnl\|CDD\|183231
NC_023032.1\|WP_007778900.1\|260237_261083_+\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpE	unknown	unknown	gnl\|CDD\|182875
NC_023032.1\|WP_007778896.1\|262154_262895_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236524
NC_023032.1\|WP_012126351.1\|249672_250914_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|223884
NC_023032.1\|WP_007778893.1\|262891_263359_-\|DUF2756-family-protein	unknown	unknown	gnl\|CDD\|182398
NC_023032.1\|WP_004384848.1\|251164_252268_+\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein-LivJ	unknown	unknown	gnl\|CDD\|237959
NC_023032.1\|WP_007778888.1\|265450_265948_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|182263
NC_023032.1\|WP_029464278.1\|257723_259043_+\|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB	unknown	unknown	gnl\|CDD\|182876
NC_023032.1\|WP_004388012.1\|268218_269214_+\|gluconate-operon-transcriptional-repressor-GntR	unknown	unknown	gnl\|CDD\|184949
NC_023032.1\|WP_007778908.1\|255982_256750_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivG	unknown	unknown	gnl\|CDD\|183080
NC_023032.1\|WP_007778898.1\|261084_262158_+\|sn-glycerol-3-phosphate-import-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NC_023032.1\|WP_004384849.1\|252660_253053_-\|aspartate-1-decarboxylase-autocleavage-activator-PanM	unknown	unknown	gnl\|CDD\|380212
NC_023032.1\|WP_007778914.1\|253475_253715_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237959
NC_023032.1\|WP_015387162.1\|248026_249292_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|180690
NC_023032.1\|WP_023897837.1\|266256_267297_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|182305
NC_023032.1\|WP_080630093.1\|263487_265251_+\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|181992

Protein	Function_ID	Function_description	E-value
NC_023032.1\|WP_023897835.1\|259353_260241_+\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpA	gnl\|CDD\|182550	PRK10561, PRK10561, sn-glycerol-3-phosphate ABC transporter permease UgpA.	0
NC_023032.1\|WP_004384851.1\|253782_254709_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH	gnl\|CDD\|182689	PRK10740, PRK10740, high-affinity branched-chain amino acid ABC transporter permease LivH.	0
NC_023032.1\|WP_004388011.1\|267418_268114_+\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	3.03213e-82
NC_023032.1\|WP_007797171.1\|254705_255986_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM	gnl\|CDD\|236896	PRK11301, livM, leucine/isoleucine/valine transporter permease subunit; Provisional.	0
NC_023032.1\|WP_007778906.1\|256751_257465_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivF	gnl\|CDD\|183231	PRK11614, livF, high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF.	2.90137e-170
NC_023032.1\|WP_007778900.1\|260237_261083_+\|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpE	gnl\|CDD\|182875	PRK10973, PRK10973, sn-glycerol-3-phosphate ABC transporter permease UgpE.	0
NC_023032.1\|WP_007778896.1\|262154_262895_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236524	PRK09454, ugpQ, cytoplasmic glycerophosphodiester phosphodiesterase; Provisional.	1.91453e-165
NC_023032.1\|WP_012126351.1\|249672_250914_+\|amino-acid-permease	gnl\|CDD\|223884	COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism].	8.12076e-56
NC_023032.1\|WP_007778893.1\|262891_263359_-\|DUF2756-family-protein	gnl\|CDD\|182398	PRK10350, PRK10350, DUF2756 family protein.	1.06384e-28
NC_023032.1\|WP_004384848.1\|251164_252268_+\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein-LivJ	gnl\|CDD\|237959	PRK15404, PRK15404, high-affinity branched-chain amino acid ABC transporter substrate-binding protein.	0
NC_023032.1\|WP_007778888.1\|265450_265948_-\|N-acetyltransferase	gnl\|CDD\|182263	PRK10140, PRK10140, N-acetyltransferase.	2.73892e-91
NC_023032.1\|WP_029464278.1\|257723_259043_+\|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB	gnl\|CDD\|182876	PRK10974, PRK10974, sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB.	0
NC_023032.1\|WP_004388012.1\|268218_269214_+\|gluconate-operon-transcriptional-repressor-GntR	gnl\|CDD\|184949	PRK14987, PRK14987, HTH-type transcriptional regulator GntR.	0
NC_023032.1\|WP_007778908.1\|255982_256750_+\|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivG	gnl\|CDD\|183080	PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional.	0
NC_023032.1\|WP_007778898.1\|261084_262158_+\|sn-glycerol-3-phosphate-import-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
NC_023032.1\|WP_004384849.1\|252660_253053_-\|aspartate-1-decarboxylase-autocleavage-activator-PanM	gnl\|CDD\|380212	NF033213, matur_PanM, aspartate 1-decarboxylase autocleavage activator PanM. Members of this family, called PanM (or PanZ), although related to the GNAT family N-acetyltransferases, have a different function. Then enzyme PanD, aspartate 1-decarboxylase, has an active site modified Ser residue, created by cleavage of a precursor form. PanM promotes the maturation of the CoA biosynthesis enzyme PanD, but also inhibits its activity in the presence of CoA. Figure 6 in PMID:26276430 identifies residues considered critical to interaction with PanD; seed alignment sequences and cutoff scores were chosen to separate proposed PanM from functionally distinct relatives.	7.57187e-78
NC_023032.1\|WP_007778914.1\|253475_253715_+\|hypothetical-protein	gnl\|CDD\|237959	PRK15404, PRK15404, high-affinity branched-chain amino acid ABC transporter substrate-binding protein.	1.01186e-07
NC_023032.1\|WP_015387162.1\|248026_249292_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|180690	PRK06777, PRK06777, 4-aminobutyrate--2-oxoglutarate transaminase.	0
NC_023032.1\|WP_023897837.1\|266256_267297_+\|oxidoreductase	gnl\|CDD\|182305	PRK10206, PRK10206, putative oxidoreductase; Provisional.	0
NC_023032.1\|WP_080630093.1\|263487_265251_+\|gamma-glutamyltransferase	gnl\|CDD\|181992	PRK09615, ggt, gamma-glutamyltranspeptidase; Reviewed.	0

>NC_023032.1|WP_029464278.1|257723_259043_+|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB
MTASLRRTAICVALGWALSSQAMAATTIPFWHSMEGELGKEVNSLAQRFNEAHPEYKIEPVYKGNYEQSLAAGIAAFRTGNAPAILQVYEVGTATMMASKAIKPVYEVFNDAGIKFDESQFVPTVAGYYTDAKSGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLAAYTAKLKAAGMKCGYASGWQGWIQIENFSAWHGLPVATKNNGFDGADAVLEFNKPEQVKHIALLEELNKKGDFSYFGRKDESTEKFYNGDCAITTASSGSLADIRHYAKFNYGVGMMPYDADVKGAPQNAIIGGASLWVMQGKNKEMYKGVAEFLNFLAQPEIAAEWHQKTGYLPITKAAYDLTRQQGFYEKNPGADIATRQMLNKPPLPFTKGLRLGNMPQIRTVVDEELESVWTGKKTPQQALDSAVERGNQLLRRFEQSTKS
>NC_023032.1|WP_007778906.1|256751_257465_+|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivF
MENVMLSFDRVSAHYGKIQALHEVSLHIRQGEIVTLIGANGAGKTTLLGTLCGDPRASTGKIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFADRAQYQERIQRVYDLFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRKEGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGEALLANEAVRSAYLGG
>NC_023032.1|WP_007778908.1|255982_256750_+|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivG
MSQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIMLRDQHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKSGLFSGLLKTPAFRRAHSEALDRAATWLERINLLQHANRQAGNLAYGDQRRLEIARCMVTQPAILMLDEPAAGLNPKETKELDELIVELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQIRNNPDVIRAYLGEA
>NC_023032.1|WP_007797171.1|254705_255986_+|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM
MKPMHFVAALLAAAMFFLLAGIFMGVQLELDGTRLVVDTADSIRWEWIAIGTGVVFLFQLLRPLFQKGLKNVSGPKFILPAIDGSTVKQKLFLVALLLVAVAWPFMVSRGTVDIATLTMIYVILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPLAGLVAAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTFFGLEFSRTAREGGWDTFSNFFGVKYDPSDRVIWLYLVALLLVVFSLFVINRLLRMPLGRAWEALREDEIACRSLGLNPTRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAILLVVSRELMRDLNEYSMLVLGGLMVLMMIWRPQGLLPMTRPQLKLKNGVSSKGEQA
>NC_023032.1|WP_004384851.1|253782_254709_+|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH
MSEQFLYFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFMIIAALMMMGIDASWLLVGAAFIGAIVVSSAYGWSIERVAYRPVRSSKRLIALISAIGMSIFLQNYVSLTQGSRDVALPSLFNGQWTIGSSENFAASITTMQLVIWVVTFIAMLALTLFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGVTESLCSAYLSTEYKDVVSFALLIGVLLVMPTGILGRPEVEKV
>NC_023032.1|WP_007778914.1|253475_253715_+|hypothetical-protein
MNSNAKRWLAGMVALALSQAVNAMTVNTAAGHGVNSAVPAANVVTGPLNWDEKSDLKGFVSEVFERHTNGSLTVLHNES
>NC_023032.1|WP_004384849.1|252660_253053_-|aspartate-1-decarboxylase-autocleavage-activator-PanM
MKLTILRLHTLSEQDKIDLAKIWPEYPSESLRLDENHRIYAARFNDRLLGAVRVTLRGTEGAMDSLRVREVTRRRGVGHYLIEETIRDNPSMTEWWVMDIGVEDYNVMNAFMQTLGFAAQQDGWVKRLEP
>NC_023032.1|WP_004384848.1|251164_252268_+|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein-LivJ
MKMKGKALLAGAIALAMSSMAMAEDIKIAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLVITKYDDACDPKQAVAVANKVVNDGVKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILDKVKPKRIAIIHDKQQYGEGLARAVQDGLKKGGANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARSAGLKTQFMGPEGVANVSLSNIAGDSAEGMLVTKPKNYDQVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLAAGLNQSDDPAAIAKYLKANSVDTVMGPLSWDSKGDLKGFEFGVFTWHANGTATDAK
>NC_023032.1|WP_012126351.1|249672_250914_+|amino-acid-permease
MSENTTSASLWASRERAASSPKSLSFVEGVAMIVGTNIGAGVLSIAYASSKAGFMPLLFWLALVGVLTTITMLYVAEATLRTRAHLQLSGLAGRYVGRIGAWLMFASVCVNSVGALTAYMTGSGKLLSSLIGVSPAIGSLIFFIPAAGILWLGLKAIGRGEKFISIGMVVMIAVLVVATLLHESTQMRWLLDGDWRYMVPVFNVTAFCFAAQYIVPEMARGFADKPEKLPKAIIVGMVITFTLLALVPLSVIALSGLDNISEVATISWGRALGEWAFFSANIFALCAMLTSYWGLGGSFLTNIFDKFRLGDDAQPLKRLGVLAVVALPPFALAYSGLVSFVNALYFAGVFSGVILSIMPILILRGARRRGEITPRWQCSWSTHPLIQGLIVLLYVASAIYAVLSAFGYLPAGW
>NC_023032.1|WP_015387162.1|248026_249292_+|4-aminobutyrate--2-oxoglutarate-transaminase
MKNSELNQRRQSATPRGVGVMCGFYAEKADNATLWDVEGNEIIDFAAGIAVLNTGHRHPRVVEAIENQLRAFTHTAYQIVPYESYVALAERINACAPIDGPAKTAFFTTGAEAVENAVKIARAYTRRPGLITFGGGFHGRTFMTMALTGKVAPYKIGFGPFPGSVFHAQYPNALHGVSVDDAMASLERIFKADIAPDQVAAIVLEPVQGEGGFNVAPPAFMEALRALCDEHGILLIADEVQSGFARTGKLFAMEHYGVKPDLLTMAKSLAGGMPLSGVVGRAEVMDAPAPGGLGGTYAGNPLAVAAAHAVLDVIEQENLCQRANELGQHLQEVLNQARTYCPAIAEVRGQGSMVAVEFNDPQTGKPSPEFTQQVLTRAREEGLLLLSCGVYGNVIRFLYPLTIPDAQFSKALEILSRALGR
>NC_023032.1|WP_023897835.1|259353_260241_+|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpA
MSSSRPVFRSGWLPYALLAPQLIITVIFFIWPAGEALWYSVQSIDPFGLSSQFVGLANFTQLFHDSYYLDSFWTTIKFSALVTVSGLLISLFFAALVDYVVRGSRFYQTLMLLPYAVAPAIAAVLWIFLFNPGRGLITHVLEQMGYYWNHSQNSGQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPVRRFFKLSLPLIAPVSFFLLVVNLVYAFFDTFPVIDAATAGGPVQATTTLIYKIYREGFAGLDLSTSAAQSVVLMVLVIILTVVQFRYVESKVRYQ
>NC_023032.1|WP_007778900.1|260237_261083_+|sn-glycerol-3-phosphate-ABC-transporter-permease-UgpE
MIENRPGLTIFSHTLLILGIAAILFPLYVAFVAATLDNQAVFATPMTLIPGTHLWENLKDIWLNGVGANSAPFWLMLLNSFIMAFSITVGKIAVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMMDSYTGLTLPLMASATATFLFRQFFMTLPDELMEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIISDPSLGTAVAGIKGMISVGEGSTQWNQVMAAMLLTLIPPVVIVLVMQRAFVRGLVDSEK
>NC_023032.1|WP_007778898.1|261084_262158_+|sn-glycerol-3-phosphate-import-ATP-binding-protein-UgpC
MAGLKLQAVTKSWDNGKTQVIQPLTMDVADGEFIVMVGPSGCGKSTLLRMVAGLERVSSGDIWIDRQRVTEMEPKERGIAMVFQNYALYPHMNVEENMAWGLKIRGMGKAHIAERVKEAARILELDGLLKRRPRELSGGQRQRVAMGRAIVRDPAVFLFDEPLSNLDAKLRVQMRLELQQLHRRLRTTSLYVTHDQVEAMTLAQRVMVMNKGVAEQTGTPVEVYEKPASRFVASFIGSPAMNLLEGRVNAEGTHFDVDGGLSLPLGRLHKTLAGRKVTLGIRPEHIALSSQAAGGVPLPLDTLEMLGADNLAHGRWGSQKVVARLAHQERPQPGSQLWLHLPENHLHFFDGETGQRL
>NC_023032.1|WP_007778896.1|262154_262895_+|glycerophosphodiester-phosphodiesterase
MSNWPYPPIVAHRGGGRLAPENTLAAIETGARLGHAMIEFDVKLTRDGQIFLLHDDTLERTSNGWGVAGELNWDELLKVDAGSWFSGAFKGEKLALLSDVAQRCREHRMMANIEIKPTTGTDADTGRVVALAARALWRDMTAPLLSSFSIEALEAAQQAAPELPRGLLLDEWRDDWQALTTRLGCVSIHLNHKLLDQARVMQLKDAGLRILVYTVNSPRRALELLAWGVDCICTDAIDEIGPDFRA
>NC_023032.1|WP_007778893.1|262891_263359_-|DUF2756-family-protein
MKRYLLIAAALPLAALAQPINVINNPNQPGYVNPSQQRLQTQMQSQQLQQKGMLNQQIQTQSRLQQQQLQTQMNNNVERIQQNQPGMLNPQREQVLPNTNGGMLNRSSGSSQHMLNSNGATLNSTQQTHMIEPRQNGDMLRQNGTTLNTQGSVAP
>NC_023032.1|WP_080630093.1|263487_265251_+|gamma-glutamyltransferase
MMQWKTVRQSVIAALAVTFCLTAGAAPSPVAAPAPAPVSYGVEEDVFHPVRAEHGMVASVDAAATQVGVDVLKQGGNAVDAAVAVGFALAVTHPQAGNLGGGGFMMLRTKDGKVTAIDFREMAPEKATRDMFLDAQGNADSKKSLTSHLASGTPGSVAGFALALQKYGTMPLDKVIQPAIALARDGFTVNDALAIDLKTYGVETLPNHPASKAIFWKQDGNPYQKGDKLVQANLARSLELIAKDGPDAFYKGPIADQIADEMAKNGGLITKADLANYKAVERTPVSGDYRGYQVYSMPPPSSGGIHIVQILNILENFDLHKYGFGSADAMQIMAEAEKYAYADRSEYLGDPDFVKVPWQALTSKAYAKSLAQQIDINKARPSKEIKPGNLAPYESNQTTHFSVVDKDGNAVAVTYTLNTTFGSGIVAGDTGILMNNQMDDFSAKPGTPNVYGLVGGDANAVGPKKRPLSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNTIDYGMNVAEATNAPRFHHQWLPDELRVEKGFSPDTLKLLREKGQNVAVKEAMGSTQSIMIGPDGALYGASDPRSVDDLTAGY
>NC_023032.1|WP_007778888.1|265450_265948_-|N-acetyltransferase
MNEIVVRHAEAEDAQALQQIHMMSEVIYNTLQIPHPSLAMWRERLGAPQPGRRQLVACMDGEVVGHLALTVEQNPRRSHVATFGMSVHPGCRNRGVASALMREMVNLCDNWLRIERIELTVFVDNAPALAVYRKFGFETEGTGKRYGLRNGEYVDAYFMARMKAG
>NC_023032.1|WP_023897837.1|266256_267297_+|oxidoreductase
MTINCAFIGFGKSTTRYHLPYVLHRKETFHVAHIFRRHPKPELESHPRYQHIHFTSDLDDILNDASVKLVVICTHADSHFDYAKRALEAGKNVLVEKPFTTSVADARLLLDLAKSKGLVVTPYQNRRFDACFLTTRKVIESGKLGEIVEIESHFDYYRPEAETKPGLPEDGMFFGLGVHTMDQIISLFGRPDHVSYDIRSLRNKANPDDTFEAQLFYGDLKAIVKTSHYVKIDYPKFIVHGKKGSFIKYGIDQQETSLKAGIMPGEPGFAADESIGHLEYVNAQGETVREEIKPEVGDYGRVYDALYDTLVNGAPNYVRESDVLTNLEILERGFEQASPATVTLAK
>NC_023032.1|WP_004388011.1|267418_268114_+|pirin-family-protein
MIYLRKAQDRGHANHGWLDSWHTFSFANYYDPNFMGFSALRVINDDVIDAGQGFGTHPHKDMEILTYVLEGAVEHQDSMGNKEQVPAGEFQIMSAGTGVRHSEYNPSATERLRLYQIWIIPSENGIEPRYEQRRFDAAQGRQLVLSPDARDGSLKVHQDMELSRWALLNGEDGEYAPAAGRRVWIQVVKGDVTINGTRATTSDGLAIWDEATLAIHADSDSEILLFDLPPV
>NC_023032.1|WP_004388012.1|268218_269214_+|gluconate-operon-transcriptional-repressor-GntR
MKKRRPVLQDVADRVGVTKMTISRYLRNPEQVSLALRSKIAAALDELGYIPNRAPDILSNATSRAIGVLLPSLTNQVFAEVLRGIESVIDAHGYQTMLAHYGYKPELEEERLESMLSWNIDGLILTERNHTPRTLKMIEVAGIPVVELMDSVSPCLDIAVGFDNFDAARQMTAAIIARGHRHVAYLGARLDERTIMKQKGYEQAMLDAGLTPYSVMVEHSSSFSTGSELLRQARREYPQLDSIFCTNDDLAIGAAFECQRLGLRIPEDMAIAGFHGHDIGQVMEPQLASVLTPRERMGRIGAERLLARIRGETVTPQMLDLGFTLSPGGSI

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Crispr_ID: NC_023032_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023032_4

404964-405085

Orphan

Consensus_repeat	Method
GCGTCGCTTACCCGCCCTACAACCGCTTTGATCCTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_023032_4

>merge|NC_023032|4|404964-405085|CRISPRCasFinder
GCGTCGCTTACCCGCCCTACAACCGCTTTGATCCTGTCCAGGGTGGATAAGCGTAGCGCATCCACCGTTTGCCAGCGGCGGGTGTGCGTCGCTTACCCGCCCTGCAACCGCTTTGATCCTGT

>NC_023032|4|4|404964-405085|CRISPRCasFinder
GCGTCGCTTACCCGCCCTACAACCGCTTTGATCCTGT	CCAGGGTGGATAAGCGTAGCGCATCCACCGTTTGCCAGCGGCGGGTGT
GCGTCGCTTACCCGCCCTGCAACCGCTTTGATCCTGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_023032.1\|WP_007778632.1\|403609_404917_+\|isocitrate-lyase	unknown	unknown	gnl\|CDD\|237893
NC_023032.1\|WP_007778648.1\|394143_394401_+\|DUF1488-domain-containing-protein	unknown	unknown	gnl\|CDD\|377825
NC_023032.1\|WP_007778619.1\|411996_413628_+\|Na/Pi-cotransporter-family-protein	unknown	unknown	gnl\|CDD\|224202
NC_023032.1\|WP_007778618.1\|413644_413920_-\|putative-addiction-module-antidote-protein	unknown	unknown	gnl\|CDD\|188241
NC_023032.1\|WP_007778643.1\|394376_394934_-\|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|223735
NC_023032.1\|WP_007778660.1\|390624_391737_+\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|236747
NC_023032.1\|WP_032968443.1\|413924_414203_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|162974
NC_023032.1\|WP_004387518.1\|414797_415733_-\|ketopantoate/pantoate/pantothenate-transporter-PanS	unknown	unknown	gnl\|CDD\|223462
NC_023032.1\|WP_023897885.1\|408047_411731_+\|methionine-synthase	unknown	unknown	gnl\|CDD\|236539
NC_023032.1\|WP_007778610.1\|415895_417488_-\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226997
NC_023032.1\|WP_004387513.1\|407013_407850_-\|glyoxylate-bypass-operon-transcriptional-repressor-IclR	unknown	unknown	gnl\|CDD\|183206
NC_023032.1\|WP_023897884.1\|405179_406970_+\|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase	unknown	unknown	gnl\|CDD\|226945
NC_023032.1\|WP_004388634.1\|391708_392182_+\|DUF494-domain-containing-protein	unknown	unknown	gnl\|CDD\|235125
NC_023032.1\|WP_007778650.1\|393328_394147_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
NC_023032.1\|WP_032970996.1\|392205_392763_+\|topoisomerase-DNA-binding-C4-zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|223625
NC_023032.1\|WP_007778653.1\|392752_393325_+\|L-threonylcarbamoyladenylate-synthase-type-1-TsaC	unknown	unknown	gnl\|CDD\|182603
NC_023032.1\|WP_023897883.1\|401976_403575_+\|malate-synthase-A	unknown	unknown	gnl\|CDD\|236432
NC_023032.1\|WP_007778613.1\|414434_414707_-\|DUF3811-domain-containing-protein	unknown	unknown	gnl\|CDD\|170492
NC_023032.1\|WP_014727948.1\|417594_417849_-\|hypothetical-protein	unknown	unknown	unknown
NC_023032.1\|WP_007778636.1\|400772_401702_+\|homoserine-O-succinyltransferase	unknown	unknown	gnl\|CDD\|235433

Protein	Function_ID	Function_description	E-value
NC_023032.1\|WP_007778632.1\|403609_404917_+\|isocitrate-lyase	gnl\|CDD\|237893	PRK15063, PRK15063, isocitrate lyase; Provisional.	0
NC_023032.1\|WP_007778648.1\|394143_394401_+\|DUF1488-domain-containing-protein	gnl\|CDD\|377825	pfam07369, DUF1488, Protein of unknown function (DUF1488). This family consists of several hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.	8.24464e-30
NC_023032.1\|WP_007778619.1\|411996_413628_+\|Na/Pi-cotransporter-family-protein	gnl\|CDD\|224202	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism].	0
NC_023032.1\|WP_007778618.1\|413644_413920_-\|putative-addiction-module-antidote-protein	gnl\|CDD\|188241	TIGR02684, conserved_hypothetical_protein, probable addiction module antidote protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the downstream member of a gene pair. It is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, are located often with prophage regions, but also both in integrated plasmid regions and in housekeeping gene regions. Analysis suggests that the gene pair may serve as an addiction module. [Mobile and extrachromosomal element functions, Other].	3.19162e-36
NC_023032.1\|WP_007778643.1\|394376_394934_-\|gamma-carbonic-anhydrase-family-protein	gnl\|CDD\|223735	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only].	6.85365e-81
NC_023032.1\|WP_007778660.1\|390624_391737_+\|DNA-protecting-protein-DprA	gnl\|CDD\|236747	PRK10736, PRK10736, DNA-protecting protein DprA.	0
NC_023032.1\|WP_032968443.1\|413924_414203_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|162974	TIGR02683, Uncharacterized_protein_HI_1419, putative addiction module killer protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the upstream member of a gene pair, where the downstream member is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, often are located with prophage regions, but also in both integrated plasmid regions and near housekeeping genes. Analysis suggests that the gene pair may serve as an addiction module.	7.01489e-42
NC_023032.1\|WP_004387518.1\|414797_415733_-\|ketopantoate/pantoate/pantothenate-transporter-PanS	gnl\|CDD\|223462	COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only].	1.38718e-100
NC_023032.1\|WP_023897885.1\|408047_411731_+\|methionine-synthase	gnl\|CDD\|236539	PRK09490, metH, B12-dependent methionine synthase; Provisional.	0
NC_023032.1\|WP_007778610.1\|415895_417488_-\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|226997	COG4650, RtcR, Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].	0
NC_023032.1\|WP_004387513.1\|407013_407850_-\|glyoxylate-bypass-operon-transcriptional-repressor-IclR	gnl\|CDD\|183206	PRK11569, PRK11569, glyoxylate bypass operon transcriptional repressor IclR.	0
NC_023032.1\|WP_023897884.1\|405179_406970_+\|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase	gnl\|CDD\|226945	COG4579, COG4579, Isocitrate dehydrogenase kinase/phosphatase [Signal transduction mechanisms].	0
NC_023032.1\|WP_004388634.1\|391708_392182_+\|DUF494-domain-containing-protein	gnl\|CDD\|235125	PRK03430, PRK03430, hypothetical protein; Validated.	6.5989e-106
NC_023032.1\|WP_007778650.1\|393328_394147_+\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	6.56309e-130
NC_023032.1\|WP_032970996.1\|392205_392763_+\|topoisomerase-DNA-binding-C4-zinc-finger-domain-containing-protein	gnl\|CDD\|223625	COG0551, TopA, Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair].	1.19591e-31
NC_023032.1\|WP_007778653.1\|392752_393325_+\|L-threonylcarbamoyladenylate-synthase-type-1-TsaC	gnl\|CDD\|182603	PRK10634, PRK10634, L-threonylcarbamoyladenylate synthase type 1 TsaC.	6.46774e-141
NC_023032.1\|WP_023897883.1\|401976_403575_+\|malate-synthase-A	gnl\|CDD\|236432	PRK09255, PRK09255, malate synthase; Validated.	0
NC_023032.1\|WP_007778613.1\|414434_414707_-\|DUF3811-domain-containing-protein	gnl\|CDD\|170492	PRK10515, PRK10515, hypothetical protein; Provisional.	2.88793e-40
NC_023032.1\|WP_007778636.1\|400772_401702_+\|homoserine-O-succinyltransferase	gnl\|CDD\|235433	PRK05368, PRK05368, homoserine O-succinyltransferase; Provisional.	0

>NC_023032.1|WP_007778632.1|403609_404917_+|isocitrate-lyase
MTTTRTQQIQQLEQEWTNPRWEGIRRPYSAQDVVKLRGSVNPECTLAQLGSARMWRLLHGESKKGYVNSLGALTGGQALQQAKAGIEAIYLSGWQVAADANLAASMYPDQSLYPANSVPAVVERINNTFRRADQIQWAAGIEPGDPRYVDYFLPIVADAEAGFGGVLNAFELMKAMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARLAADVMGVPTLLIARTDADAADLITSDCDPYDSEFITGERTSEGFFRTRAGVEQAISRGLAYAPYADLVWCETSTPDLDQARRFAEAIHARFPGKLLAYNCSPSFNWKKKLDDKTIASFQEELSAMGYKYQFITLAGIHSMWFNMFDLAHAYAQGEGMRHYVEKVQQPEFAAGKEGYTFVSHQQEVGTGYFDNVTTIIQGGVSSVTALTGSTEEAQF
>NC_023032.1|WP_023897883.1|401976_403575_+|malate-synthase-A
MNQQAMTAELAFSQPFGEQERQILTPEAVDFLTELVARFTPQRNDLLAVRQQVQKEIDGGKLPDFISETASIRNGDWKIRGIPDDLRDRRVEITGPVERKMVINALNANVKVFMADFEDSLAPAWNKVIEGQINLRDAIKGTITWTNEAGKIYQLRPNPAVLICRVRGLHLPEKHVTWRDEPVPGSLFDFALYFFHNYKNLLAKGSGPYFYLPKTQSWQEAAWWSDVFSYAEDRFNLPRGTIKATLLIETLPAVFQMDEILHALRDHIVGLNCGRWDYIFSYIKTLKNHPDRVLPDRQSVTMDKPFLNAYSRLLIKTCHRRGAFAMGGMAAFIPSKDTERNNWVLNKVKADKELEAANGHDGTWIAHPGLGDTVMAVFDAALGEHKNQLHVLREDDAPITAAQLLEPCPGERTEEGMRANIRVAVQYIEAWISGNGCVPIYGLMEDAATAEISRTSIWQWIHHQKTLSNGSKVTKDLFRQMLAEEMRVIQEELGEQRYSHGRFDEAARLMEQITTSDELIDFLTLPGYRLLA
>NC_023032.1|WP_007778636.1|400772_401702_+|homoserine-O-succinyltransferase
MPIRVPDELPAVNFLRQENVFVMTTSRASVQEIRPLKVLILNLMPKKIETENQFLRLLSNSPLQVDIRLLRIDSRESRNTPAEHLNNFYCNFEDICDENYDGLIVTGAPLGLVEFNDVAYWPQIQQVLEWAKEHVTSTLFVCWAVQAALNILYGIPKQTRQEKISGVYEHHITQPHALLTKGFDDTFLAPHSRYADFPAALIRDYTDLDILAESEEGDAYLFASKDKRIAFVTGHPEYDALTLAGEYFRDVEAGLAPRVPYNYFPNDDPTKTPRATWRSHGNLLFTNWLNYYVYQITPYDLRHMNPTLE
>NC_023032.1|WP_007778643.1|394376_394934_-|gamma-carbonic-anhydrase-family-protein
MSSSVLRPYKNTFPTTGQRVMVDSSSVVIGDVRLADDVGVWPLVVIRGDVNYVAVGTRTNIQDGSVLHVTHKSSYNPEGNPLIIGEDVTVGHKVMLHGCTIGNRVLVGMGSIVLDGAVIEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRQLKDTELEGLRYSANNYVKWKDEYLAQESQTQP
>NC_023032.1|WP_007778648.1|394143_394401_+|DUF1488-domain-containing-protein
MNQAIQFPDREHWDEQRQAICFPALVRGIVLTCAIPQSVLVARFSGTSPEEWIAAFRQHRWDLEEEAEQLIAAQAEDDQGWVWLS
>NC_023032.1|WP_007778650.1|393328_394147_+|shikimate-dehydrogenase
METYAVFGNPVSHSKSPFIHQQFAQQLQITHPYGRVLAPLDNFVKTLENFFSAGGKGANVTVPFKEQAFARADELTERAALAGAVNTLKRLEDGRLLGDNTDGIGLLSDLERLGMIQPRYRILLVGAGGAARGVLLPLLSLDCVVTITNRTFARAQELATLFSHTGSVNAIALTDLADHEFDLIINATSSGIHGEIPALPPSLPGKTTMCYDMFYQKGLTPFLAWCQAQGATQLADGLGMLVGQAAHAVLLWHGVLPEVVPVIEKLRQELAQ
>NC_023032.1|WP_007778653.1|392752_393325_+|L-threonylcarbamoyladenylate-synthase-type-1-TsaC
MKNNQPADAISSIVDVLKKEQVIAYPTEAVFGVGCDPDSETAVKRLLELKQRPMEKGLILIAANFEQLKPYIDDAVLTPEQHEAVFARWPGPVTFVFPAKPSTPRWLTGRFDSLAVRVTNHPQVIALCEAFGKPLVSTSANLSGLEPCRTAQEVLAQFGDDFPVLHGATGGRQNPSEIRDALTGELFRQG
>NC_023032.1|WP_032970996.1|392205_392763_+|topoisomerase-DNA-binding-C4-zinc-finger-domain-containing-protein
MARSALFSVPKHEPCPKCGAELLIRSGKHGPFLGCSHYPECDYVRPLKSQADGHIVKVLEGQQCPACDATLVLRQGRFGMFIGCSRYPECEHTEQIDKPDETALRCPQCSDGHLVQRRSRFGKTFYSCDRYPECQFVINTRPVAGECPECHYPLLTEKKTAQGIKRFCASKQCGKPVTAEKDSEE
>NC_023032.1|WP_004388634.1|391708_392182_+|DUF494-domain-containing-protein
MFDVLMYLFETYIHNEAEMRVDQDKLTRDLTDAGFDQEDIFNALLWLEKLADYQDGLSAPMQLASDPLSMRIYTAEECQRLDASCRGFLLFLEQIQVLNLETREMVIERVMALDTAEFDLEDLKWVILMVLFNIPGCENAYQQMEELLFEVNDGMLH
>NC_023032.1|WP_007778660.1|390624_391737_+|DNA-protecting-protein-DprA
MSPTEIWLRLMAVYSLGGEIMVRAFKRLQNMPGDPALALRLAGLNIKQRTLFFNYPQAKLEAVLRWLDMPGHHLITALSPEYPVALRAIDCFPGALLVAGDPRALSRPQLAVVGSRHHSWYGEQWGSKLCYALAESGLTLTSGLALGIDAIAHRSALKAQGKTIAVLGNGLAQIYPARHRKLAEEIVERGGALVSEFPFEAQPRPAHFPRRNRIISGLGVGVLVVEAALRSGSLVTARCALEQGREVFALPGPVGNPGCEGPHWLIQQGAVAVTHPQDIIDYLQNELPWLTTVNYSPDQEEGALPFPELLANVGDEVTPVDVVAERAGQPVPLTVAQLLELELAGWIAAVPGGYVRVRRAGHVRRTNVFV
>NC_023032.1|WP_023897884.1|405179_406970_+|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase
MPPRGLELLIAQTILQGFDAQYGRFLEITAGAQHRFEQADWHAVQQAMKSRIHLYDHHVGLVVEQLRCIMEGKATDPDFLLRVKRHYTDLLPDYPRFEIAESFFNSVYCRLYDHRSLTPDRLFIFSSQPERRFRTMPRPLAKNFFPEQGWQPLLTTLLTDLPLRLPWQDLARDVRYIIAHLNETVGPARLAQAHLEVANELFYRNKAAWLVGKLRLPDATLPFLLPVHRSDDGELFVDTCLTGSAGASIVFGFARSYFMVYAPLPAALVEWLREILPGKTTAELYMAIGCQKHAKTESYREYLHYLRHADEQFIEAPGIRGMVMLVFTLPGFDRVFKVIKDRFAPQKEMSEAHVRACYQLVKEHDRVGRMADTQEFENFVIEKRRISPELMALLQQEVGQKLTDMGDKISISHLYIERRMVPLNIWLEQATGQQLRDAIEEYGNAIRQLAAANIFPGDMLFKNFGVTRHGRVVFYDYDEICYMTEVNFRDIPPPRYPEDELSAEPWYSVAPGDVFPEEFRHWLCADPKIGPLFEEMHSDLFSASYWRALQTRIREGYVEDVYAYRRRQRFCVRWKNHNGHPEAAVSAIAPSAVGEG
>NC_023032.1|WP_004387513.1|407013_407850_-|glyoxylate-bypass-operon-transcriptional-repressor-IclR
MVATVPAKRGKKPRNAAAAAAPQATGQVQSLTRGLKLLEWIAESQGSVALTELAQQAGLPNSTTHRLLTTMQQLGFVRQVGDLGHWAIGAHAFIIGSSFLQSRNLLAIVHPILRKLMEESGETVNLAVLDKSDHQAIIIDQVQCTQLMRMSAPIGGKLPMHASGAGKAFLSQLSDEDVSALLHRQGLKAYTHATLVAPAHLKDDLAQTRKRGYSFDDEEHALGLRCVAACIYDEHHEAFAAISISGPISRMTDDRVTELGAMVIRAAKEVTQAFGGVR
>NC_023032.1|WP_023897885.1|408047_411731_+|methionine-synthase
MSSKSEQLHRQLAERIMVLDGGMGTMIQSYRLDEEDFRGERFADWPCDLKGNNDLLVLTKPDIIAAIHYAYFEAGADIIETNTFNSTTIAMADYQMESLSAEINYEAAKLARACADEWTARTPEKPRYVAGVLGPTNRTASISPDVNDPAFRNITFDQLVEAYRESTRALIEGGSDLILIETVFDTLNAKAAIFAVKAEFEALGVELPIMISGTITDASGRTLSGQTTEAFYNSLRHADALTFGLNCALGPDELRQYVAELSRIAECYVTAHPNAGLPNAFGEYDLDADVMAAQIREWAESGFLNIVGGCCGTTPEHIAAMSRAVEGLPPRKLPDIPVACRLAGLEPLNIGDDSLFVNVGERTNVTGSAKFKRLIKEEKYSEALDVARQQVENGAQIIDINMDEGMLDAEAAMVRFLNLIAGEPDIARVPIMIDSSKWDVIEKGLKCIQGKGIVNSISMKEGVGAFVHHAKLVRRYGAAVVVMAFDEVGQADTRERKIEICRRAYKILTEEVGFPPEDIIFDPNIFAVATGIDEHNNYAQDFIGACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIHAVFLYYAIRNGMDMGIVNAGQLAIYDDLPTELRDAVEDVILNRRADGTERLLALAEKYRGSKADNAADAQQAEWRTWDVKKRLEYSLVKGITEFIEQDTEEARQQAARPIEVIEGPLMDGMNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPYIQASKEVGKSNGKIVLATVKGDVHDIGKNIVGVVLQCNNYEIIDLGVMVPTDKILKTAREVNADIIGLSGLITPSLDEMVNVAKEMERQGFTLPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNASRTVGVVSALLSDTLRDDFVARTRKEYETVRIQHGRKKPRTPPVTLAAARENDLAFDWESYTPPAAHRLGVEEVTASIETLRNYIDWTPFFMTWSLAGKYPRILEDEIVGEEAQRLFKDANEMLDKLSAEKSLTPRGVVGLFPANRVGDDIEIYRDETRTHVLSVSHHLRQQTEKVGFANYCLADFVAPKSSGKADYLGAFAVTGGLEEDALAEAFDAQHDDYNKIMVKAVADRLAEAFAEYLHERVRKVLWGYAPYENLSNEELIRENYQGIRPAPGYPACPEHTEKSVIWDLLDVENRIGMKLTESYAMWPGASVSGWYFSHPESKYFAVAQIQRDQVEDYAQRKGMSVSEVERWLAANLGYDAD
>NC_023032.1|WP_007778619.1|411996_413628_+|Na/Pi-cotransporter-family-protein
MLTLLHLLSAVALLVWGTHIVRTGVMRVFGARLRSVLSRSVEKKPLAFCAGIGVTALVQSSNATTLLVTSFVAQDLVALTPALVIVLGADVGTALMARVLTFDLSWLSPLLIFIGVIFFLGRKQSRAGQMGRVAIGLGLILQALELIVQAVTPITKASGVQVIFASLTGDIMLDALIGAVFAVISYSSLAAVLLTATLTATDVISFQVALCLVIGANLGSGLLAMLNNGAASPAARRVALGSLLFKLVGSLLVLPFVPLLAQSLHKLPLEESELVIYFHVFYNLIRCLVMVPFAGMMARLCQRIIPDAPETDLRMKPRHLDPSALDTPALGLANAARETLRIGDVLEQMLEVYGKVMHGEPRQEKTLRRLADDVDVLYTAIKLYMARMPKEDLAEDEAKRWAEIIEMSLNLEQAADILERMGSEVANKSLAARRAFSPEGVKELDTLLEKLTANLKLSLSVFFAGDVQSARRLRRHKHRFRILNRRYAHAHVDRLHQQNVQSIETSSLHLGLLGDMKRLNSLFCAVAYSILEQPDDDEERLEE
>NC_023032.1|WP_007778618.1|413644_413920_-|putative-addiction-module-antidote-protein
MKLTEYDPAAALIDDEEIAFFMADALETGDAGHIAKALGVVARAKGMAHIAAQTGLSREQLYRSFSDKGNPTLKTTLAVMKALGLGLTIKS
>NC_023032.1|WP_032968443.1|413924_414203_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MPPWQASLKDQRVKTMIAARLFRLANGLPGDVKHVGTGISELRIHYGEGYRIYFKQHGDVIVILLCGGDKHTQDKDILLAKMLADLPENQWR
>NC_023032.1|WP_007778613.1|414434_414707_-|DUF3811-domain-containing-protein
MSLPRLTQKEMTESEQRELKTLLDRARIAHGRPLTNSEANHVKKEYIDKLMAQREQAAKQTRKQKKAQSYKPDSDATFSWSASTPVRGRR
>NC_023032.1|WP_004387518.1|414797_415733_-|ketopantoate/pantoate/pantothenate-transporter-PanS
MLATLTRLFPLWALLLSVIAYYTPATFTPIGPWVSTLLMLIMFGMGVHLKLDDFKRVLSRPAPVAAGIFLHYLVMPLAAWLLAMLFHMPPDLSAGMVLVGSVASGTASNVMIYLAKGDVALSVTISSVSTLVGVVATPLLTRLYVDAHIQVDVMGMLLSILQIVVIPIALGLIVHHLFPRVVKAVEPYLPAFSMVCILAIISAVVAGSASHIASVGLMVIVAVILHNSIGLLGGYWGGRLFGFDESTCRTLAIEVGMQNSGLAAALGKLYFSPLAALPGALFSVWHNLSGSLLAGYWSGKPVDKNARRSGR
>NC_023032.1|WP_007778610.1|415895_417488_-|sigma-54-interacting-transcriptional-regulator
MQKRRVVIGMLGTVLDRRGKRANRWNKWRPSIALCQQPGLPVDRFELLHQARDASLAERVMEDIAAVSPHTEVRPHTVVMDDPWDFEEVYAALLDFATRYPFDTENEEYLVHITTGTHVAQICWFLLTEARYLPAALLQTSPDRQGDEKDQKATGTASVIDLDLSRYATLTSRFQREQQQSVSFLKSGIDTRNATFNRLIDQIERVALRSTAPILLTGPTGAGKSFLAKRIFQLRQARHLVQGKLVSVNCATLRGDNAMSTLFGHVKGAFTGAQQARPGLLREADGGVLFLDEIAELGLDEQAMLLKAIEEKTFFPFGSDKEVRSDFQLIAGTHRDMARWVAEGRFREDLYARINMWAFALPGLAERREDIAPNVEYELQRFSAQQQTQIRFDKTARERYLAFACSPQARWPGNFRELGSSVARMATLAEQGRITDALVEEEIARLSASWQPLAGPAAALPVDTTTLDLFDQDQLAAVVAVCRRSASLSEAGRTLFAVSRQKKANPNDADRLRKYLARFGLSWEQVKAPE
>NC_023032.1|WP_014727948.1|417594_417849_-|hypothetical-protein
MAVANDSTAGVLLLTFLWKEKESSGVEPDKPTVFHVIALAERPLDNVLPFPVRRRGYKPLHTQRADEVIIARSVPVSVKVKINF

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Crispr_ID: NC_023032_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023032_5

453900-453991

Orphan

Consensus_repeat	Method
TGGCGGTGGGTGCGCTTCGCTTACCCACCCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_023032_5

>merge|NC_023032|5|453900-453991|CRISPRCasFinder
TGGCGGTGGGTGCGCTTCGCTTACCCACCCTACGGGTACGTTAAACCCTGGTTTATTAATGGCGGCGGGTGCGCTTCGCTTACCCACCCTAC

>NC_023032|5|5|453900-453991|CRISPRCasFinder
TGGCGGTGGGTGCGCTTCGCTTACCCACCCTAC	GGGTACGTTAAACCCTGGTTTATTAA
TGGCGGCGGGTGCGCTTCGCTTACCCACCCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_023032.1\|WP_007778553.1\|447171_448452_+\|conjugal-transfer-protein-TraF	unknown	unknown	gnl\|CDD\|372693
NC_023032.1\|WP_007778519.1\|461081_461426_-\|hypothetical-protein	unknown	unknown	unknown
NC_023032.1\|WP_004388592.1\|445891_446407_-\|zinc-uptake-transcriptional-repressor-Zur	unknown	unknown	gnl\|CDD\|183251
NC_023032.1\|WP_007778547.1\|449669_449930_+\|envelope-stress-response-protein-PspG	unknown	unknown	gnl\|CDD\|181875
NC_023032.1\|WP_007778530.1\|457616_458039_+\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|223509
NC_023032.1\|WP_004386202.1\|465096_465633_+\|single-stranded-DNA-binding-protein-SSB1	unknown	unknown	gnl\|CDD\|236362
NC_023032.1\|WP_004388591.1\|445602_445812_+\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|182452
NC_023032.1\|WP_023897909.1\|465978_467025_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NC_023032.1\|WP_007778537.1\|454165_455359_+\|aromatic-amino-acid-transaminase	unknown	unknown	gnl\|CDD\|181731
NC_023032.1\|WP_023897907.1\|462040_464866_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NC_023032.1\|WP_007778550.1\|448542_449538_+\|tRNA-dihydrouridine(20/20a)-synthase-DusA	unknown	unknown	gnl\|CDD\|236991
NC_023032.1\|WP_032983416.1\|455805_457488_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NC_023032.1\|WP_032983131.1\|444087_445395_+\|MATE-family-efflux-transporter-DinF	unknown	unknown	gnl\|CDD\|182413
NC_023032.1\|WP_004388597.1\|451215_452622_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|181193
NC_023032.1\|WP_007778516.1\|461438_461951_-\|hypothetical-protein	unknown	unknown	unknown
NC_023032.1\|WP_007778544.1\|450111_451095_-\|quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|182701
NC_023032.1\|WP_023897904.1\|458760_461052_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|368641
NC_023032.1\|WP_007778525.1\|458035_458389_+\|MmcQ/YjbR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|225197
NC_023032.1\|WP_032986277.1\|452795_453875_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
NC_023032.1\|WP_007778556.1\|446516_447023_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380353

Protein	Function_ID	Function_description	E-value
NC_023032.1\|WP_007778553.1\|447171_448452_+\|conjugal-transfer-protein-TraF	gnl\|CDD\|372693	pfam13729, TraF_2, F plasmid transfer operon, TraF, protein.	5.77752e-83
NC_023032.1\|WP_023897909.1\|465978_467025_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	8.78608e-54
NC_023032.1\|WP_004388592.1\|445891_446407_-\|zinc-uptake-transcriptional-repressor-Zur	gnl\|CDD\|183251	PRK11639, PRK11639, zinc uptake transcriptional repressor Zur.	9.27496e-121
NC_023032.1\|WP_007778547.1\|449669_449930_+\|envelope-stress-response-protein-PspG	gnl\|CDD\|181875	PRK09459, pspG, envelope stress response protein PspG.	2.23663e-23
NC_023032.1\|WP_007778530.1\|457616_458039_+\|YjbQ-family-protein	gnl\|CDD\|223509	COG0432, COG0432, Uncharacterized conserved protein [Function unknown].	8.32496e-61
NC_023032.1\|WP_004386202.1\|465096_465633_+\|single-stranded-DNA-binding-protein-SSB1	gnl\|CDD\|236362	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional.	1.40106e-102
NC_023032.1\|WP_004388591.1\|445602_445812_+\|CsbD-family-protein	gnl\|CDD\|182452	PRK10428, PRK10428, hypothetical protein; Provisional.	1.72474e-33
NC_023032.1\|WP_007778537.1\|454165_455359_+\|aromatic-amino-acid-transaminase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NC_023032.1\|WP_023897907.1\|462040_464866_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NC_023032.1\|WP_007778550.1\|448542_449538_+\|tRNA-dihydrouridine(20/20a)-synthase-DusA	gnl\|CDD\|236991	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA.	0
NC_023032.1\|WP_032983416.1\|455805_457488_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	3.99707e-149
NC_023032.1\|WP_032983131.1\|444087_445395_+\|MATE-family-efflux-transporter-DinF	gnl\|CDD\|182413	PRK10367, PRK10367, DNA-damage-inducible SOS response protein; Provisional.	0
NC_023032.1\|WP_004388597.1\|451215_452622_+\|replicative-DNA-helicase	gnl\|CDD\|181193	PRK08006, PRK08006, replicative DNA helicase DnaB.	0
NC_023032.1\|WP_007778544.1\|450111_451095_-\|quinone-oxidoreductase	gnl\|CDD\|182701	PRK10754, PRK10754, NADPH:quinone reductase.	0
NC_023032.1\|WP_023897904.1\|458760_461052_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	gnl\|CDD\|368641	pfam05860, Haemagg_act, haemagglutination activity domain. This domain is suggested to be a carbohydrate- dependent haemagglutination activity site. It is found in a range of haemagglutinins and haemolysins.	5.75897e-22
NC_023032.1\|WP_007778525.1\|458035_458389_+\|MmcQ/YjbR-family-DNA-binding-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	1.48642e-47
NC_023032.1\|WP_032986277.1\|452795_453875_+\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
NC_023032.1\|WP_007778556.1\|446516_447023_+\|cupin-domain-containing-protein	gnl\|CDD\|380353	cd02224, cupin_SPO2919-like, Silicibacter pomeroyi SPO2919 and related proteins, uncharacterized sugar phosphate isomerase with a cupin domain. This family includes proteins similar to sugar phosphate isomerase SPO2919 from Silicibacter pomeroyi and Afe_0303 from Acidithiobacillus ferrooxidans, but are as yet uncharacterized. Structures of these proteins show a cupin fold with a conserved "jelly roll-like" beta-barrel fold that form a homodimer.	3.07314e-47

>NC_023032.1|WP_032986277.1|452795_453875_+|alanine-racemase
MQAATVVVNRRALRHNLQRLRELAPASQLVAVVKANAYGHGLLETARTLPDADAFGVARLEEALRLREGGITQPILLLEGFFNAGDLPAIAAQQLHTAVHSEEQLMALEQAMLSEPVTVWMKLDTGMHRLGVRPEAAQAFYDRLAACKNVRQPVNVVSHFARADEPDCGATERQLDIFNSFTHDKPGKRSIAASGGILFWPQSHFDWVRPGIILYGVSPLDTHPWGAELGFQPAMSLTSSLIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRCAPTGTPVLVNGREVPIVGRVAMDMICVDLGPDAAEKAGDTVVMWGEGLPVERIAEATGVSAYELVTRLTSRVAMRYLD
>NC_023032.1|WP_004388597.1|451215_452622_+|replicative-DNA-helicase
MAGNKPFNKPTEPRDPQVAGLKMPPHSMEAEQSVLGGLMLDNERWDDVAERVVAEDFYTRQHRMIFTEMHRLQEMGKPIDLITLSESLELQGQLESVGGFAYLAELSKNTPSAANISAYADIVRERAVVRDMISVANEIADAGYDPQGRTSEDLLDLAESRVFQIAENRANKDEGPKSIDQILEATVARIETLYQQPHDGVTGVDTGYQDLNKKTAGLQRSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIYREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDNYAGPQYDDE
>NC_023032.1|WP_007778544.1|450111_451095_-|quinone-oxidoreductase
MATRIEFSQHGGPEVLKAVTFTPADPDEMEVQVENKAIGINYIDTYIRSGLYPPPALPAGLGTEAAGVVTKVGSGVTHLKPGDRVVYAQSALGAYSSVHNVPADKAVVLPDVISFEQAAACFLKGLTVFYLLRKTYEIKPDEMFLFHAAAGGVGLIACQWAKALGARLIGTVGSAEKAQRAKQAGAWQTINYREENVPERLRELTGGKKVRVVYDSVGKETWESSLDCLQRRGLMVSFGNSSGPVTGVNLGILNQKGSLYVTRPSLNGYLTNRAELEEASNELFSLIASGVIKVEVAESQKFALEDAARAHKTLESRSTQGSSLLIP
>NC_023032.1|WP_007778547.1|449669_449930_+|envelope-stress-response-protein-PspG
MFELLFVVAFFLMLLATGVSLIGIIAALMVATLVMFFGGVFALMIKLLPWLLLAVAVVWVIRTVKAPKVPEYRRTSRYSRTNRWRY
>NC_023032.1|WP_007778550.1|448542_449538_+|tRNA-dihydrouridine(20/20a)-synthase-DusA
MTSTSRNAFPAHRFSIAPMLDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAALAHCAKLAEERGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVRAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPQLTMSINGGIKTLDDVKTHLEHMDGVMVGREAYQNPGILASVDREIFGLDVPDADPVAVVRAMYPYIEGELAKGTYLGHVTRHMLGLFQGIPGARQWRRYLSENAHKPGADINVLEQALKLVADKR
>NC_023032.1|WP_007778553.1|447171_448452_+|conjugal-transfer-protein-TraF
MKNIIKPSVAAVALSLVMANQASAANTWAQARNDAMGGTGVASADYGSGALINPALLARSQPEDDITVILPALQAQITDKDNLEDEIDHISDRVDYYRDVVNSLTPGDIAANPIGTLRQFQGAARELGDELEYLRGKTASARAAGGIAVSIPNDVLAVAFVAKAYAHARVSTRVDQSDIDYLRRIQNDDIYAGTQIINAAINGSDAITDRLTSTAFGRAAIVSDYGVAFAHRFQVGDVPVSVGVTPKLQKTWLYNYTASIYNYDSSDWNSSRYRNDDTGFNVDAGVAADFGPNWTVGVSGQNLMSRDIDTKEVNGYKDTYQISPLVTAGVAWHNDLVTLSADGDLTETKGFKSEENSQFVGVGAEVRPLNWLAVRAGFRADVKDNESNVFTAGVGFAPFNRVHLDLTGIVGEDETWGAGAQLSLTF
>NC_023032.1|WP_007778556.1|446516_447023_+|cupin-domain-containing-protein
MHTRPECICHWQEVEGNDDACYPDSDELMSIGAPLAKRTGLTRLGIHHERLPPGRRTSYPHAESSEEEFVYVLEGFPDVWLNGELWPLKPGDSVGFPAGTGLCHTFINNTDSEVRLLVVGEANKPENRVYYPLNGPYAATRPDRWIDHPPQFFGPHDGLPTRIKNPNL
>NC_023032.1|WP_004388592.1|445891_446407_-|zinc-uptake-transcriptional-repressor-Zur
MDTTISQEVLAQAEKLCQQRNVRLTPQRLEVLRLMTIQPGAISAYDLLDLLRESEPQAKPPTVYRALDFLLEQGFVHKVESTNSYVLCHLFDNPAHTSAMFICDRCGVVKEEAAEGVEDIMHALAARMGFALRHNVIEAHGLCAACAEIEACRHQGQCGHDHSITVKKKGR
>NC_023032.1|WP_004388591.1|445602_445812_+|CsbD-family-protein
MNRDEAGGNWKQFKGKVKEQWGKLTDDDMTIIEGKRDQLVGKIQERYGYAKDEADKEVTDWESRHDYRW
>NC_023032.1|WP_032983131.1|444087_445395_+|MATE-family-efflux-transporter-DinF
MPFLTSTDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGARDPVALARALVQPMALALIAGVLIIALREPLIHLALHVTGGSDAVLTQARRFLEIRWLSAPAALANLVLLGWLLGVQYARAPVILLVVGNLLNIVLDLWFVMGLGLNVQGAALATAIAEYATLGIGLMMAARVLRLRGITLSMLKMAWRGGVGRLLALNRDIMLRSLLLQLCFGSITVFGARLGSDIVAVNAILMTLLTFTAYALDGFAYAVEAHAGQAFGAQDKSQLNSVWRAACRQAGMVALAFALLYAVAGQYIVSLLTSLPSLQALAQPYLFWQAILPVVGVWCYLLDGMFIGATRGAEMRNSMAVAALGFGLTLLTLPALGNHGLWLALTVFLALRGLSLGYLWRRGRLLH
>NC_023032.1|WP_007778537.1|454165_455359_+|aromatic-amino-acid-transaminase
MFQNVDAYAGDPILSLMERFKEDPRSDKVNLSIGLYYNEQNIIPQLQAVAQAEQRLNAQPHGASLYLPMEGLNNYRSAIAPLLFGADHPALTAGRIASIQTVGGSGALKIGADFLKRYFPQSRVWVSDPTWENHVAIFNGAGFEVSTYPWFDAETNGVRFEALLEKLNTLPARDIVLLHPCCHNPTGADLTNAQWDVVVEVLKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVVCDDAETAARVLGQLKATVRRNYSSPPNFGAQVVATVLNDATLKAQWLAEVEAMRCRILEMRQALVDVLKTEVPGRNFDYLLKQRGMFSYTGLSAAQVDRLRDEFGVYLISSGRMCVAGLNSRNVKQVAQAFAAVM
>NC_023032.1|WP_032983416.1|455805_457488_+|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MIVRRSNVYPAILSVLVGWHSPVYAEVIANQQALNQQQQNEARHESLAPESKSLLSTAEVKPREGLNLPEEQPCYPVNAIQIDNKNAVAHWMSFQDVVRSVKGKCVGINGLKMIHKTVQNRLIEHGYITTRVLIPAQDLKSGTLKFQILPGTISEIVFKGDGGKYIHAINNFPERQGDVLDLRGLEQGLENLQRTPGSETNIQLLPGTKPGETRVEVTRTQPKHWRLGAWADDSGSKYTGRYQSGLAFYLDNLTSLNDMFYAAYGGGLKNEDGRRSDNVSAFYSVPWGYWQLELYGSKYRYTQTIHDSVSSYLYSGIEKYLSAQLSRVIYRSASQKTTLALKAFRRDSTYLLNDVEIEVQRRKTSNWKLSLEHLTYLPFGQVKASLGYQKAAHWFNELEDAEEQVGSADPQARIVTMSVDGAFPFKLGKLSLSYEPHFMSQTSPDRLTQPDKFTIGNRWTVRGFDGETTIYADKGWYLRNDINLNLPQWGMQPYLGLDYGEVKGSKNDYWSGKQLAGAALGVRGVKGKFGYDLFAGVPLMKPEELHTSPFTLGFAMQWQY
>NC_023032.1|WP_007778530.1|457616_458039_+|YjbQ-family-protein
MWFQQTLTLKSRPRGFHLITDEIVSQLPALSQVQTGLLHLLLQHTSASLTLNENCDPSVRRDMERYFQTAVPDNGHYEHDDEGPDDMPAHIKSSTLGVSLILPVKQGRLLLGTWQGIWLGEHRNHGGSRRIVATLQGETL
>NC_023032.1|WP_007778525.1|458035_458389_+|MmcQ/YjbR-family-DNA-binding-protein
MTNSDLLDYCMNKPGAEQSEHREWKAAQIKVGDVMFAMVHEVSHRPAVSLKTSPELAELLRQEHKDVFPSAQLNKAHWSTVYLDGELPDSQIYYLVDASYQQAVGLLPEQIRQQLSV
>NC_023032.1|WP_023897904.1|458760_461052_+|filamentous-hemagglutinin-N-terminal-domain-containing-protein
MENKHGATFRAPKELRAKMGPVCFATLLALGMVQSAGAAITADTSAANQPGIHTSTSGATVVDINKASSEGVSHNIYSEFNVDKNGVVLNNSTTNTSTQQAGNINGNANLAGQSATIILNEVRSSDPSQLNGMVEVAGQSAQVIIANPSGITCDGCGFINTNHATLTTGTANFDDAGKLTGFDVQKGQVTITGAGMDVNNSGKPLMTDIYARSVKVNAKLQANNLNIITGANRINTNGTVKETLEGIGAAPAVALDVSSLGSMYAGKITMVGTDTGVGVRLDHADITAQDRLSISTAGKIENNNSVIASGNALTINSQSLDNSNGEIRSDAGSLVINSRQDLNNHNGKISGYDVSVNGGDTNNTDGIIQSKGNLSLTGFTLDNQNGVVSSGDDLSVNYNYSNHNDPSVYAIKNENGVMASAGNMFIQTVNLDNNSGLITADKALSISAAKLVNTNSDNFVASENWKGVNQAGGIYAGDSEGANTHSHYMTGESIISVASLDNEAGRIVSTGKNTDLHIMSSQVINNNEGIIDAAKSLTIDQRSQFNNGNGKVSAAQDLNINAYDFSSDAKGEIKANNINLHTSGTFNNSGVITASRDLLLNVGDAHSYLSETSYNKGQITAGGAMTVQTDMTNFVNEGTIKAGDALNWHGGNVINKGVIDSNSDIRFTVQSLKNAKGATIDGKSVTISGAVDNQGTITPDYIPDNGPAPHPDDNGGHTPMPDPAPAPRPDDGGHTPIPDQTPSHHSDSQSQSSSGSSSTYSHH
>NC_023032.1|WP_007778519.1|461081_461426_-|hypothetical-protein
MSTLINAVGQALASPQFQKSALKIVADEFLGLLRQGLNDRETFINTSAEIAAQAVLDRSQGLISEEDMAALLNKQKTIAQIHANSSEIALRTRIQSITMRLLDLAASAIACGLK
>NC_023032.1|WP_007778516.1|461438_461951_-|hypothetical-protein
MICARSQPMLNFAKGGQTQGNIMPRISTLTHYFPGWLLGLTVLISACSLVGNYQPRAHAQLTDLMAAHLQMIDDFTAPSGTLDTLALADADHTLQLRFAEALAYAESLGDPLRTDNLRLLQLVYREDHARLLRQHRPFTPAQAALWRAQARLAYLEAVRGECNRPASPCE
>NC_023032.1|WP_023897907.1|462040_464866_-|excinuclease-ABC-subunit-UvrA
MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLYARVGEPRCPDHDVTLAAQTVSQMVDNVLALPEGKRLMLLAPVIKERKGEHTKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVREDLAQRLAESFETALELSGGTAVVADMDDEKAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVVQNGELSLAGGAIRGWDRRNFYYFQMLRSLAEHYKFDVEAPWNTLSDKVQKAVLFGSGKETIEFKYMNDRGDTSVRRHPFEGVLHNMERRYKETESNAVREELAKFISNRPCATCEGTRLRREARHVFVENTALPTISDMSIGHAMEFFNNMKLSGQRAKIAEKVLKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRNLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGQVVAEGPLDAIMAVPESLTGQFMSGKRKIEVPKERVKADPEKVLKLTGARGNNLKDVTLTLPVGLFTCVTGVSGSGKSTLINDTLFPIAQRQLNGATIAEPAPYRDVQGMEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPEARSRGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLAVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPLLK
>NC_023032.1|WP_004386202.1|465096_465633_+|single-stranded-DNA-binding-protein-SSB1
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANLRLATSESWRDKQTGEMKEVTEWHSVVLYGKLAEVAGEYLRKGSQVYIEGQLRTRKWQDQSGQDRYSTEVVVNVGGTMQMLGGRQGGGAGGNMGGGQQQGGWGQPQQPQQQGGGAQFSGGAQSRPQQQAPAPSNEPPMDFDDDIPF
>NC_023032.1|WP_023897909.1|465978_467025_+|GGDEF-domain-containing-protein
MSERDRDQLLSQATDQYWQHIIPIVWLALLIHVGLIFLFLSMSIPTLAIFNIFSVMVYIHCLNEIEHYRYLYVGTLMSVEILAHAVATTVLLGWESNFYLFVFSLLPIVSFSFQQVPVRRALFLAAIAVLGTVGYALRHHTGTASGLSPAVLNGIGVANAVMAIGLLMYTTLRSVEFTHAMKLDLFNTASRDSLTNLYTRRHFMHQVSLLDKQPGTHNVALLLLDIDHFKTINDSCGHSYGDMILQRIARAITDNVRESDIVARWGGEEFLVLMPDTSLPDARRVAERLLTRIQEWVGQTDKNPREVTATLAISAFGKDEEFEKALNRADKMLYAGKQQGRNRLVIAD

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Crispr_ID: NC_023032_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023032_6

608460-608575

Orphan

Consensus_repeat	Method
CGGTGGGTGCGCTTCGCTTACCCACCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_023032_6

>merge|NC_023032|6|608460-608575|CRISPRCasFinder
CGGTGGGTGCGCTTCGCTTACCCACCCTACAAAGATTTGCCGGGCGGTGGGTGCGCTTCGCTTACCCACCCTACAACGATTTGCCGGGCGGTGGGTGCGCTTCGCTTACCCACCCT

>NC_023032|6|6|608460-608575|CRISPRCasFinder
CGGTGGGTGCGCTTCGCTTACCCACCCT	ACAAAGATTTGCCGGGCGGTGGGTGCGCTTCGCTTACCCACCCTACAACGATTTGCCGGG
CGGTGGGTGCGCTTCGCTTACCCACCCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_023032.1\|WP_007774511.1\|618909_619419_-\|YbjP/YqhG-family-protein	unknown	unknown	gnl\|CDD\|372360
NC_023032.1\|WP_004385262.1\|600758_601121_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|132616
NC_023032.1\|WP_004385264.1\|601449_602226_+\|DUF4311-domain-containing-protein	unknown	unknown	gnl\|CDD\|274659
NC_023032.1\|WP_023897962.1\|602921_604055_+\|amidohydrolase/deacetylase-family-metallohydrolase	unknown	unknown	gnl\|CDD\|236423
NC_023032.1\|WP_004385265.1\|602236_602881_+\|DUF4310-family-protein	unknown	unknown	gnl\|CDD\|339115
NC_023032.1\|WP_023897967.1\|612037_612568_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|179895
NC_023032.1\|WP_007774501.1\|611053_611935_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NC_023032.1\|WP_007778249.1\|600418_600742_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|132621
NC_023032.1\|WP_004386038.1\|614299_615718_-\|PTS-trehalose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|182896
NC_023032.1\|WP_007774481.1\|604038_605157_+\|DgaE-family-pyridoxal-phosphate-dependent-ammonia-lyase	unknown	unknown	gnl\|CDD\|273623
NC_023032.1\|WP_007774500.1\|608621_610757_-\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|236436
NC_023032.1\|WP_023897968.1\|612577_614239_-\|alpha,alpha-phosphotrehalase	unknown	unknown	gnl\|CDD\|182849
NC_023032.1\|WP_007774503.1\|615852_616800_-\|HTH-type-transcriptional-regulator-TreR	unknown	unknown	gnl\|CDD\|181905
NC_023032.1\|WP_004386042.1\|618547_618850_+\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NC_023032.1\|WP_007774505.1\|617047_617665_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_023032.1\|WP_007764242.1\|601124_601427_+\|DUF4312-family-protein	unknown	unknown	gnl\|CDD\|213831
NC_023032.1\|WP_032983363.1\|617853_618489_+\|glutaredoxin-2	unknown	unknown	gnl\|CDD\|236679
NC_023032.1\|WP_023897965.1\|607969_608434_-\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl\|CDD\|236853
NC_023032.1\|WP_007774485.1\|605153_605894_+\|KDGP-aldolase-family-protein	unknown	unknown	gnl\|CDD\|188342
NC_023032.1\|WP_007774487.1\|606007_607918_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234

Protein	Function_ID	Function_description	E-value
NC_023032.1\|WP_007774511.1\|618909_619419_-\|YbjP/YqhG-family-protein	gnl\|CDD\|372360	pfam12883, DUF3828, Protein of unknown function (DUF3828). This is a family of bacterial proteins of unknown function.	1.38978e-44
NC_023032.1\|WP_004385262.1\|600758_601121_+\|hypothetical-protein	gnl\|CDD\|132616	TIGR03577, EF_0830, conserved hypothetical protein EF_0830/AHA_3911. Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Hypothetical proteins, Conserved].	6.59449e-62
NC_023032.1\|WP_004385264.1\|601449_602226_+\|DUF4311-domain-containing-protein	gnl\|CDD\|274659	TIGR03580, EF_0832, conserved hypothetical protein EF_0832/AHA_3913. Members of this family of relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Unknown function, General].	4.72687e-158
NC_023032.1\|WP_023897962.1\|602921_604055_+\|amidohydrolase/deacetylase-family-metallohydrolase	gnl\|CDD\|236423	PRK09237, PRK09237, amidohydrolase/deacetylase family metallohydrolase.	0
NC_023032.1\|WP_004385265.1\|602236_602881_+\|DUF4310-family-protein	gnl\|CDD\|339115	pfam14187, DUF4310, Domain of unknown function (DUF4310). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 214 and 231 amino acids in length.	3.37574e-102
NC_023032.1\|WP_023897967.1\|612037_612568_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|179895	PRK04930, PRK04930, glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional.	2.48735e-52
NC_023032.1\|WP_007774501.1\|611053_611935_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.76006e-63
NC_023032.1\|WP_007778249.1\|600418_600742_+\|hypothetical-protein	gnl\|CDD\|132621	TIGR03582, EF_0829, PRD domain protein EF_0829/AHA_3910. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. This protein contains a PRD domain (see pfam00874). The function is unknown. [Unknown function, General].	7.92542e-38
NC_023032.1\|WP_004386038.1\|614299_615718_-\|PTS-trehalose-transporter-subunit-IIBC	gnl\|CDD\|182896	PRK11007, PRK11007, PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional.	0
NC_023032.1\|WP_007774481.1\|604038_605157_+\|DgaE-family-pyridoxal-phosphate-dependent-ammonia-lyase	gnl\|CDD\|273623	TIGR01437, selA_rel, uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. [Unknown function, Enzymes of unknown specificity].	0
NC_023032.1\|WP_007774500.1\|608621_610757_-\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|236436	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
NC_023032.1\|WP_023897968.1\|612577_614239_-\|alpha,alpha-phosphotrehalase	gnl\|CDD\|182849	PRK10933, PRK10933, trehalose-6-phosphate hydrolase; Provisional.	0
NC_023032.1\|WP_007774503.1\|615852_616800_-\|HTH-type-transcriptional-regulator-TreR	gnl\|CDD\|181905	PRK09492, treR, HTH-type transcriptional regulator TreR.	0
NC_023032.1\|WP_004386042.1\|618547_618850_+\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	3.53708e-21
NC_023032.1\|WP_007774505.1\|617047_617665_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.4906e-10
NC_023032.1\|WP_007764242.1\|601124_601427_+\|DUF4312-family-protein	gnl\|CDD\|213831	TIGR03578, EF_0831, conserved hypothetical protein EF_0831/AHA_3912. Members of this family of small (about 100 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Hypothetical proteins, Conserved].	3.99277e-42
NC_023032.1\|WP_032983363.1\|617853_618489_+\|glutaredoxin-2	gnl\|CDD\|236679	PRK10387, PRK10387, glutaredoxin 2; Provisional.	5.94566e-118
NC_023032.1\|WP_023897965.1\|607969_608434_-\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl\|CDD\|236853	PRK11121, nrdG, anaerobic ribonucleoside-triphosphate reductase-activating protein.	1.2573e-125
NC_023032.1\|WP_007774485.1\|605153_605894_+\|KDGP-aldolase-family-protein	gnl\|CDD\|188342	TIGR03581, EF_0839, conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Hypothetical proteins, Conserved].	1.63905e-151
NC_023032.1\|WP_007774487.1\|606007_607918_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	1.07766e-70

>NC_023032.1|WP_023897965.1|607969_608434_-|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MNYHQYYPVDVVNGPGTRCTLFVAGCVHQCPGCYNKSTWRLNSGAPFTADMENRIIADLNDTRVKRQGLSLSGGDPLHPQNVSAILKLVQRVRAECPGKDIWVWTGYKIDELSDAQREVVNLINVLVDGKFVQDLKDPALIWRGSSNQVIHRLR
>NC_023032.1|WP_007774487.1|606007_607918_+|BglG-family-transcription-antiterminator
MRFPSQRLSRLFDLLQNETLPQDELARRLNVTTRTVRADISALNTLLCQHGVQLVLNRGSGYQLTVDDMERYQALQASRPKVLRIPRTAPERVHYLAVRFLTSAFSLKLEDLAEEWFVSRATLQNDMAEVRELFTRYNLTLETRPRHGMKLFGSEMALRACLTDLLWQLAQQDSANPLITEEALNAGVQERLAERLPTIFAHARLRFTDEGEQFIRLYCAVAVRRISEGFPLPEFVADDVDDNVREAARGTAALLQTLCGKPLSEAEENWLRVHIAARQVQELEPSAISADDAEALAGYILRYINTHYNYNLLTDEQLRADLLTHIRTMITRVRYQINIPNPLLGNIKQHYPMAWDMTLAAVSGWGKYTPYTISENEVGFLVLHIGVGLERHYNVGYQRNPRVLLVCDTGNSTVRMIQSMLLRKYPQLEVSEIATLRDYEQRVAIAEDFVISTARVAEKDKPVVVMSPFPTDFQLEQIGKLVLVDRTRPWMLEKYFDARHFRVVDGAMTQQQLFKELCDELEQDGYVGADFLPSVVEREAIVSTMLGDGIALPHSLGLMARKTVVYTVLAPQGIAWGEETAHVIFLLAISKREYEEAMTIYDLFVTFLRERAAQQLQTCRDFAQFQAVAMTCLSRF
>NC_023032.1|WP_007774485.1|605153_605894_+|KDGP-aldolase-family-protein
MKLTPNFYRDRVCLNVLAGSKENASAIYEAAEGHVLVGVLSKNYPDVASAVEDMRDYAKRIDNALSVGLGAGDPNQSAMVSAIVRELQPQHVNQVFTGVGASRALLGQRETVVNGLVSPTGTAGLVKISTGPLSSSAPDGIVPVETAIALLKDMGGSSVKYFPMGGLACREEYQAMADACARHDFWLEPTGGIDLDNFQEILRIALEAGVSKVIPHIYSSIIDKASGDTRPEDVRRLLAMTRNLMG
>NC_023032.1|WP_007774481.1|604038_605157_+|DgaE-family-pyridoxal-phosphate-dependent-ammonia-lyase
MPSVYEKYELKQVINASGRMTILGVSTPRQEVVEAVTQGLNHYFEMKDLVNKTGAYIARLLEVEAATIVSCASAGLAQSVAAVLVKESDWLLENLHTTAIGQNEIVLPKGHNVNYGAPVGTMVALGGGKLVEAGYANECSAQQLAAAITPRTAAILYVKSHHCVQKSMLSVAQAAAVAREHQLPLIVDAAAEEDLQCYYRAGADLVIYSGAKAIEGPSSGLVIGKTQYVEWVKRQANGIGRAMKVGKEGILGLTSAIEHYLSAPKESGAQMVAKMTPFIDQLNTLNGVTARVVWDSAGRDIARSEITFDEAVTGINTGELVSALKQGEYAIYFRGYKANEGIIEADVRSVSAAQLEIVFRRIRDVLNQEAHA
>NC_023032.1|WP_023897962.1|602921_604055_+|amidohydrolase/deacetylase-family-metallohydrolase
MFDLILRQARLVDDTLADIAIKDGKIAALGRVTGEARATRDLNGEHYVSPGWIDLHVHCYPKSPIYHDEPDAVGVTTGVTTVVDAGSTGANDIDDFYALTRGVATEVLALLNVSKVGLIAQNELADMANIDAAAAREAIARHPDFIVGLKARMSSSVVGENGIAPLERAKAIQQENGNLPLMVHIGNGPPPLDEIAARLSQGDIITHCFNGKPNRILTPQGQLRASISDALERGVRLDVGHGSASFSFEVARQAIALGILPHTISSDIYCRNRINGPVRSLAHVMSKFLAIGLSLPQVIDCVTLHAAQALRLAHKGQLTPGADADLTIFDLRRQPVLFTDADEETLHGDYLLVPLATVRAGAWHMTEQGSAEHAFSV
>NC_023032.1|WP_004385265.1|602236_602881_+|DUF4310-family-protein
MEENKGFWYADWSFPIFVGLLSSGVFAGTHMYYLYGIGAFNEVAFVAMLKAGIDTGVYGAVAAFGASFLFARIIEGSLVGILDIGGAIQTGVGLGVPALLLGAGFVFPVANFAASLVTGLLIGLAIGYVIILARKFTINQSDSTYGADVMMGAGNASGRFLGPLIILSAMTASIPIGVGSLVGALLFYLWQKPITGGAILGAMILGSLFPVAIG
>NC_023032.1|WP_004385264.1|601449_602226_+|DUF4311-domain-containing-protein
MFLIILIKSLIIGGLVGVGVGAGAARMFHAPTTQGMGAFRTLGELNSCEGDPASHFSFGLGFFFNAWASSVAAGAFTQDVDHRIIPNWGAAALMVKNRNLADTLHNPKKMAVACGLIGMAVVAFLNTTASAVPEALQVTAVKVLVPAANLLVNTVMPVIFWLAAIDAGKKSGFWATVFGGAAQLIMGNAVPGLVLGILIGKGVEESGWNRVTKVMMTAIVLLFVLSAFFRGFDMKMIESFRLTVPDWLSLIHNSLSGK
>NC_023032.1|WP_007764242.1|601124_601427_+|DUF4312-family-protein
MKEQFTTTVRVKGKGDARARAFADALNQVQAAVMKASPHILLRIEPQDVQVVHARETVRKEAFLFFFLRRERRAFSVELDVTVNVTAINLDKVDFVTQHS
>NC_023032.1|WP_004385262.1|600758_601121_+|hypothetical-protein
MEQITVVIGDRLGKGQKVAAGAEKAGARAVVVPGVAADMKLGDVMKTEGATFGISFCGSGGAGAITAQTKHGYKAKYGMRSVEEGVTAINEGCNVLGFGFMDKEELGERLVEAWKKKYGA
>NC_023032.1|WP_007778249.1|600418_600742_+|hypothetical-protein
MNNAGCQHADDAATLAGRMLDEVYALLERHQITPNDVQRQMLSSHVRAMAHRSVTGEPLPEVEESLFEEISEGSMALAREIVAQFGNLPDEEAWLLSVHFEVAKENL
>NC_023032.1|WP_007774500.1|608621_610757_-|anaerobic-ribonucleoside-triphosphate-reductase
MTPHVVKRDGCKVPFNSARIREAILRAAQAAGVDDADYCATVAEIVSSQMQNRREVDIHEIQTAVENQLMAGNYKQLARAYIEYRHDRDIAREKQGRLNKEIRGLVEQTNPALLNENANKDSKVIPTQRDLLAGIVAKHYARQYLLPRDVVLAHERGEIHYHDLDYSPFFPMFNCMLIDLKGMLTQGFKMGNAEIEPPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVTASFEKHRRTALEWNIPDVEGYARARTEKECYDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWESRLIQSSILRNRIAGLGKNHKTAVFPKLVFAIRDGLNHKAGDPNYDIKQLALECASKRMYPDILNYDQVVKVTGSFKTPMGCRSFLGVYEENGEQIHDGRNNLGVISLNLPRIALEAKGDETAFWALLDERLKLARKALMTRIARLEGVKARVAPILYMEGACGVRLKPDDDVAEIFKNGRASISLGYIGIHETINALSGNQHIYDSETLRAKGIAIVERLRQAVDRWKEETGYGFSLYSTPSENLCDRFCRLDTAEFGVVPGVTDKGYYTNSFHLDVEKKVNPYDKIDFEAPYPPLASGGFICYGEYPNLQHNLKALEDVWDYSYHHVPYYGTNTPIDECYECGFTGEFECTSKGFTCPKCGNHDASRVSVTRRVCGYLGSPDARPFNAGKQEEVKRRVKHLGNGQLG
>NC_023032.1|WP_007774501.1|611053_611935_-|LysR-family-transcriptional-regulator
MTLTSDVHRLLPAFLAAAQSQSFSAAARLLGVTPAAISKSVRQLEARLGRVLFQRNTHFVVLTEEGAALREQVAPLWHALNQALEKPADEPQGLVRVSVIPGFGRYLLMPELSAFQQRYPQVRLDLAMDPRRVNLIGERIDVAIGQRTVQDSRIVTREIRPMRMMLAASPAYLARFGTPQQPQDLLHHRCLVHRNPGNGKLQSWLADELAMEEQHAFLISTFPDVLVDAALAEMGIVSLADWYLAPLIAAGRLVPLMETHWPAPQPLWVKYPHHRLAPRVRALVDFLIEKFTV
>NC_023032.1|WP_023897967.1|612037_612568_+|NAD(P)H-dependent-oxidoreductase
MKKVLVLAGHRYPDDSRVNRAAIEALKALPQVTVHELMREYPDFNIDVKREQALLLTHDAVVMLFPFWWYSSPAILKEWQDQVLEHGFAYGTGGDRLHGKPFMLMVSTGGSAEAYSPQGYNRYPIDEFWLPFHAMANMTGMIWQPPALIQGTHVLSDADLDAGVAQWLSRVNALVR
>NC_023032.1|WP_023897968.1|612577_614239_-|alpha,alpha-phosphotrehalase
MNNTLPWWQNGVIYQIYPKSFQDTSGNGTGDLAGVTRRLDYLQKLGVDAIWLTPFYLSPQVDNGYDVANYTAIDPAYGTLEEFDALVADAHARGIRVILDMVFNHTSTQHAWFHDALTRESAHREFYIWRDGTPEEAPNNWRSKFGGSAWRWHAESGQYYLHLFAPEQADLNWENPQVRAEVKKVCEFWADRGVDGLRLDVINLISKDQDFPSDDRGDGRRFYTDGPRIHDYLQELSRDVFQPRGLMTVGEMSSTTLENCQRYAALEGHELSMTFNFHHLKVDYPDGQKWTLAAPDFVALKAIFNHWQQGMHGVAWNALFWCNHDQPRIVSRFGDEGALRVPAAKMLAMVLHGMQGTPYIYQGEELGMTNPHFTRIIDYRDVESHNMFAERRAQGQSPETLLAILASKSRDNSRTPMQWDDSDNGGFTTGTPWIGLCDNYREINAARALNDPDSVFYAYQKLIRLRKAHPIFTWGDYHDLLAAHPYLWCYRREWQGQTLVVMANLSREAHWCTPGDFSGAWQVLMSNYPDAAPRPGEMNLRPFEAVIWLQGNA
>NC_023032.1|WP_004386038.1|614299_615718_-|PTS-trehalose-transporter-subunit-IIBC
MSKVNQQDIDKLITLVGGRENIATVSHCITRLRFVLNQPSKADPKAIEELPMVKGCFTNAGQFQVVIGTNVGDYYQALIATSGHSAASKEQAKLAARQNMKWHERLISHFAEIFFPLLPALISGGLILGFRNVIGDVPMHDGKTLAQMFPSLKTIYDFLWLIGEAIFFYLPVGICWSAVRKMGGTPILGIVLGVTLVSPQLMNAYLLGQQTPEVWDFGLFTIAKVGYQAQVIPALLAGLALGMIEIRLKRLVPDYLYLVVVPVCSLLLAVFLAHAFIGPFGRLIGDGVAFGVRHLMTGSFAPIGAALFGFLYAPLVITGVHQTTLAVDMQMIQSMGGTPVWPLIALSNIAQGSAVVGIIMTSRKHNEREISVPAAISAYLGVTEPAMYGINMKYRFPMLCGMVGSSIAALLCGLSGVVANGIGVGGLPAILSIQPDYWQVYGMAMLVAIIVPFILTAFLYKRKSRQGTLLVV
>NC_023032.1|WP_007774503.1|615852_616800_-|HTH-type-transcriptional-regulator-TreR
MQHRLTIKDIARLSGVGKSTVSRVLNNESGVSERTREKVEAVMRQQGFSPSRSARAMRGQSDKVVAIIVTRLDSLSENLAVQTILPALYEQGYDPIMLESRFSPALVQEHLGVLSRRHIDGVILFGFSGISEAMTAAWQKSLVLMARDAAGFASVCYEDDGAIRLLMQRLYDNGHRHISFLGVPHSDITTGKRRHEAYLHFCKQHALTPRDTLPGLAMKQGYEHAADVLDAETTALVCATDTLAIGASKYLQQRGGAPVQLASVGNTPLLKFLHPEAIAVDPGYGEAGRAAAKQLIDQITGRADPRQIVIPARLG
>NC_023032.1|WP_007774505.1|617047_617665_-|TetR/AcrR-family-transcriptional-regulator
MQTDADHPESRKPKRGIATRRRLLKHACAEFARLGYHSTKVSNIVKASGLSQPTFYLYFASKEAAYEELVSEFRLRLERLTETLLIRDRIEGEALVKSVQNSFLKLLNFLAEDKALTEIGFFQPPGCTQTKATLVNAIASNIASEQTLGLFRSDIDALHMARCCVGMIDQMARVPADEAVPEALALGCAQLLCEGIWLRRQHHDV
>NC_023032.1|WP_032983363.1|617853_618489_+|glutaredoxin-2
MKLHIYEHCPFCVRALMIFGLKKLPVEVCVIMEGDAETPTRMVGRKVVPILEKDDGTYMPESMDIVRYMDGLAQPRVADAPVDEAIKQWCESVSTPLFNLAIPRFTEGDFAELATPEARRAYTAREEKAFGDLAALRAQTPALLAQVNSELNALEPLVAGRHAIDTTDFILFPLLRSLTIVKGAAFGPQVSAYIERVSAQTGVALLSAQAK
>NC_023032.1|WP_004386042.1|618547_618850_+|antibiotic-biosynthesis-monooxygenase
MTVPVVAIFVSKPGKEETLEQLFRGVIEKTHAEEGCIVYQLNRDTENPRRFVWTEEWESRELLQKHLQSAHIIHLFSELPKYIETSSVMMLDKLAGGPAK
>NC_023032.1|WP_007774511.1|618909_619419_-|YbjP/YqhG-family-protein
MKHRLALVMLFFSASTLAQGNAQTPTQFLKSLYQSYAKGNEPVDFASKGEQQILSDRLLSLVEEDTRLSGGEVGFLDYDPICYCQDWDDLAVDKINVTNSDATHANATITFRPFRSSPDATTQSFALINEKGRWRIDDIMNGNGSLYKSLQESGQQLRADSTNNDTVSP

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Crispr_ID: NC_023032_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023032_7

843003-843086

Orphan

Consensus_repeat	Method
GGCGGGTGCGCTGCGCTTACCCGCCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_023032_7

>merge|NC_023032|7|843003-843086|CRISPRCasFinder
GGCGGGTGCGCTGCGCTTACCCGCCCTGGGGAATATACGGTTAAATAATTATGGTATGGCGGGTGCGCTGCGCTTACCCGCCCT

>NC_023032|7|7|843003-843086|CRISPRCasFinder
GGCGGGTGCGCTGCGCTTACCCGCCCT	GGGGAATATACGGTTAAATAATTATGGTAT
GGCGGGTGCGCTGCGCTTACCCGCCCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_023032.1\|WP_007777795.1\|838109_838553_-\|cysteine-desulfurase-sulfur-acceptor-subunit-CsdE	unknown	unknown	gnl\|CDD\|184980
NC_023032.1\|WP_023898070.1\|843171_843927_-\|flap-endonuclease-Xni	unknown	unknown	gnl\|CDD\|181896
NC_023032.1\|WP_007777781.1\|850811_851141_+\|YqcC-family-protein	unknown	unknown	gnl\|CDD\|377282
NC_023032.1\|WP_007777780.1\|851137_851935_+\|tRNA-pseudouridine(65)-synthase-TruC	unknown	unknown	gnl\|CDD\|182971
NC_023032.1\|WP_004388155.1\|847229_848594_-\|LOG-family-protein	unknown	unknown	gnl\|CDD\|378752
NC_023032.1\|WP_023898075.1\|852422_855182_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NC_023032.1\|WP_007777794.1\|841875_842976_+\|23S-rRNA-(cytidine(2498)-2'-O)-methyltransferase-RlmM	unknown	unknown	gnl\|CDD\|236971
NC_023032.1\|WP_023898071.1\|844058_845426_-\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|273233
NC_023032.1\|WP_007701398.1\|841487_841883_+\|DUF423-domain-containing-protein	unknown	unknown	gnl\|CDD\|182798
NC_023032.1\|WP_032968395.1\|832793_834125_-\|amino-acid-N-acetyltransferase	unknown	unknown	gnl\|CDD\|235386
NC_023032.1\|WP_007777783.1\|849626_850172_+\|SecY-interacting-protein	unknown	unknown	gnl\|CDD\|235324
NC_023032.1\|WP_023898073.1\|848711_849557_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|236986
NC_023032.1\|WP_041461038.1\|845492_846779_-\|HAAAP-family-serine/threonine-permease	unknown	unknown	gnl\|CDD\|273283
NC_023032.1\|WP_004385390.1\|840524_841442_+\|glycine-cleavage-system-transcriptional-regulator-GcvA	unknown	unknown	gnl\|CDD\|182990
NC_023032.1\|WP_004385389.1\|839951_840179_+\|YgdI/YgdR-family-lipoprotein	unknown	unknown	gnl\|CDD\|380215
NC_023032.1\|WP_023898065.1\|838553_839759_-\|cysteine-desulfurase-CsdA	unknown	unknown	gnl\|CDD\|182799
NC_023032.1\|WP_007777796.1\|837299_838109_+\|tRNA-cyclic-N6-threonylcarbamoyladenosine(37)-synthase-TcdA	unknown	unknown	gnl\|CDD\|185071
NC_023032.1\|WP_007777778.1\|851938_852388_+\|flavodoxin	unknown	unknown	gnl\|CDD\|181230
NC_023032.1\|WP_004385385.1\|836093_837191_+\|murein-transglycosylase-A	unknown	unknown	gnl\|CDD\|236866
NC_023032.1\|WP_023898064.1\|834352_835606_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|182376

Protein	Function_ID	Function_description	E-value
NC_023032.1\|WP_007777795.1\|838109_838553_-\|cysteine-desulfurase-sulfur-acceptor-subunit-CsdE	gnl\|CDD\|184980	PRK15019, PRK15019, cysteine desulfurase sulfur acceptor subunit CsdE.	6.76368e-77
NC_023032.1\|WP_023898070.1\|843171_843927_-\|flap-endonuclease-Xni	gnl\|CDD\|181896	PRK09482, PRK09482, flap endonuclease-like protein; Provisional.	8.55542e-173
NC_023032.1\|WP_007777781.1\|850811_851141_+\|YqcC-family-protein	gnl\|CDD\|377282	pfam04287, DUF446, tRNA pseudouridine synthase C. This family is suggested to be the catalytic domain of tRNA pseudouridine synthase C by association. The structure has been solved for one member, as Structure 2HGK, which by inference is designated in this way.	5.59142e-41
NC_023032.1\|WP_007777780.1\|851137_851935_+\|tRNA-pseudouridine(65)-synthase-TruC	gnl\|CDD\|182971	PRK11112, PRK11112, tRNA pseudouridine synthase C; Provisional.	0
NC_023032.1\|WP_004388155.1\|847229_848594_-\|LOG-family-protein	gnl\|CDD\|378752	pfam11892, DUF3412, Domain of unknown function (DUF3412). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain is found associated with pfam03641.	2.05112e-83
NC_023032.1\|WP_023898075.1\|852422_855182_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NC_023032.1\|WP_007777794.1\|841875_842976_+\|23S-rRNA-(cytidine(2498)-2'-O)-methyltransferase-RlmM	gnl\|CDD\|236971	PRK11760, PRK11760, putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional.	0
NC_023032.1\|WP_023898071.1\|844058_845426_-\|L-serine-ammonia-lyase	gnl\|CDD\|273233	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	0
NC_023032.1\|WP_007701398.1\|841487_841883_+\|DUF423-domain-containing-protein	gnl\|CDD\|182798	PRK10873, PRK10873, hypothetical protein; Provisional.	4.916e-76
NC_023032.1\|WP_032968395.1\|832793_834125_-\|amino-acid-N-acetyltransferase	gnl\|CDD\|235386	PRK05279, PRK05279, N-acetylglutamate synthase; Validated.	0
NC_023032.1\|WP_007777783.1\|849626_850172_+\|SecY-interacting-protein	gnl\|CDD\|235324	PRK04968, PRK04968, SecY interacting protein Syd; Provisional.	2.41376e-107
NC_023032.1\|WP_023898073.1\|848711_849557_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|236986	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional.	0
NC_023032.1\|WP_041461038.1\|845492_846779_-\|HAAAP-family-serine/threonine-permease	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_023032.1\|WP_004385390.1\|840524_841442_+\|glycine-cleavage-system-transcriptional-regulator-GcvA	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	0
NC_023032.1\|WP_004385389.1\|839951_840179_+\|YgdI/YgdR-family-lipoprotein	gnl\|CDD\|380215	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein. Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.	2.3222e-33
NC_023032.1\|WP_023898065.1\|838553_839759_-\|cysteine-desulfurase-CsdA	gnl\|CDD\|182799	PRK10874, PRK10874, cysteine desulfurase CsdA.	0
NC_023032.1\|WP_007777796.1\|837299_838109_+\|tRNA-cyclic-N6-threonylcarbamoyladenosine(37)-synthase-TcdA	gnl\|CDD\|185071	PRK15116, PRK15116, sulfur acceptor protein CsdL; Provisional.	0
NC_023032.1\|WP_007777778.1\|851938_852388_+\|flavodoxin	gnl\|CDD\|181230	PRK08105, PRK08105, flavodoxin; Provisional.	1.20924e-97
NC_023032.1\|WP_004385385.1\|836093_837191_+\|murein-transglycosylase-A	gnl\|CDD\|236866	PRK11162, mltA, murein transglycosylase A; Provisional.	0
NC_023032.1\|WP_023898064.1\|834352_835606_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|182376	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA.	5.52989e-87

>NC_023032.1|WP_007777794.1|841875_842976_+|23S-rRNA-(cytidine(2498)-2'-O)-methyltransferase-RlmM
MNKVILYCRQGFEKECAAEITDKAAQQGVFGFARVKENSAYVIFECYQPEEADKLARELPFSSLIFARQMFVAGDLLQDLPPEDRVTPVVGMLQGVVEKGGELRVEVADTNESKELMKFCRKFTVPLRAALRDAKILANFETPKRPVVHVFFIAPGCCYTGYSYTNNNSPFYMGIPRLKFPADAPSRSTLKLEEAFHVFIPADEWDERLANGMYAVDLGACPGGWTYQLVKRNMWVASVDNGPMAQSLMDTGQVTWLREDGFKYRPTRTNITWMVCDMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSQNIASIQAQLDEHGINAQIQARQLYHDREEVTVHVRRWWAAVGGRRDER
>NC_023032.1|WP_007701398.1|841487_841883_+|DUF423-domain-containing-protein
MTSRFMLIFASISGFVFVALGAFGAHVLRKTLGVAEMGWIQTGLEYQAFHTLAILGLAVAMQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLHLWAFVTPVGGVSFLAGWILMLIGAVRLKRKGSVHE
>NC_023032.1|WP_004385390.1|840524_841442_+|glycine-cleavage-system-transcriptional-regulator-GcvA
MSKRLPPLNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQSYFQDIKEIFSQLTEATRKLQARSAKGALTVSLLPSFAIHWLVPRLSSFNSSWPGIDVRIQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKLYAEYLLPVCSPLLLTGDKPLKAPEDLARHTLLHDASRRDWQTYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQGVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKAASEQEKFRFRYEQ
>NC_023032.1|WP_004385389.1|839951_840179_+|YgdI/YgdR-family-lipoprotein
MNKLAAVVSACMMTFALSACSGPNYVMHTNDGRSIVTDGKPKTDDDTGMIKYKDANGNQQQINRTDVKEMVALEK
>NC_023032.1|WP_023898065.1|838553_839759_-|cysteine-desulfurase-CsdA
MKAFSPAQFRAQFPSLRDAGVYLDSAATALKPQPVIDASQQFYSLSAGNVHRSQFAEAQRLTERYEAARDCVARLINAPDSRDIVWTRGTTESINLIAQCYARPRLKPGDEIIVSEAEHHANLVPWLMVAEQTGAKVVKLPLGTDLLPDLAALPALINERTFLLALGQMSNVTGGCPDLARAIGTAHAAGAVVVVDGAQGVVHCPPDVQQLDIDFYAFSGHKLYGPTGIGVLYGKTDLLAQMSPWLGGGKMVTEVSFDSFKTQPVPYRFEAGTPNVAGVIGLSAALAWLEDIDLAKAESYSRGLATLAEAELAKRPGFRSFRCQDSSLLAFDFAGVHHSDLVTLLAESGIALRAGQHCAQPLLAALGVSGTLRASFAPYNTQGDVEALIAAIDRALDILVD
>NC_023032.1|WP_007777795.1|838109_838553_-|cysteine-desulfurase-sulfur-acceptor-subunit-CsdE
MTTAYLAGHPFGASITPDTLRQTFGPLTQWEDKYRQLILLGKQLPALPETLKQEAQEIPGCENRVWLGYEKRPDGGLHFYGDSEGRIVRGLLAVLLTAVEGKTPQELQENSPLALFDELGLRAQLSASRGQGLTALAQAVQDAARNA
>NC_023032.1|WP_007777796.1|837299_838109_+|tRNA-cyclic-N6-threonylcarbamoyladenosine(37)-synthase-TcdA
MAVVITDAWRSRFGGTARLYGEAALQLFADAHVCVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDTVGQAKSEVMAERIRQINPECRITVVDDFVTVDNVAQYMNAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQTDPTQIQVVDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQADGSVCAMKSTAEGPKRMDCASGFGAATMVTATFGFVAVSHALKKMMAKAARSAG
>NC_023032.1|WP_004385385.1|836093_837191_+|murein-transglycosylase-A
MKGRWAKYLAAGAMIALLSACSSKPTDRGQQYKDGKFTQPFSLVNQPDAVGAPINAGDFSEQVAAIRSASPRLFGSQSSVYNAVQEWLRAGGDTRSLRQFGIDAWQMEGADNYGNVQFTGYYTPVVQARYTRQGEFQYPIYRMPPKRGRLPSRAEIYAGALSDNYVLAYSNSLMDNFIMDVQGSGYIDFGDGRPLNFFAYAGKNGHPYRSIGKVLIDRGEVKREDMSMQAIRHWGETHSEQEVRALLEENPSFVFFKPQNYAPVKGASGVPLIGRASVASDRSIIPAGTTLLAEVPLLDNNGKFNGQYELRLMVALDVGGAIKGQHFDIYQGIGPDAGHRAGWYNHYGRVWVLKTAPGAGNVFSG
>NC_023032.1|WP_023898064.1|834352_835606_+|N-acetylmuramoyl-L-alanine-amidase
MSGSSHLFSRRQLLQGAGAMWLLSVSQVGLAASGQVIAVRVWPASAYTRVTLESNRVLKYRQFALSNPERIVVDLEGVNLNAVLKGVSNQIRVDDPFIKSARVGQFDPKTVRMVFELKKNVTPHLFALAPVAEFRERLVIDLYPANGTNEQDPLLALLEDYNKGELDKQVPPATSGPQPGKAGRDRPIVIMIDPGHGGEDPGAIGKNKTREKDVVLQIARRLRALIEREANMKAFMTRNEDIFIPLKVRVAKAQKQRADLFVSIHADAFTSRAARGSSVFALSTKGATSTAAKYLAQTQNAADLVGGVSKSGDVYLDHTMFDMVQSLTISDSLKFGKEVLGRLGRVNKLHKNKVDQAGFAVLKAPDIPSILVETAFISNEEEERKLRTATFQQEVAESILAGIKAYFADGGTLARRG
>NC_023032.1|WP_032968395.1|832793_834125_-|amino-acid-N-acetyltransferase
MVKERRTELVQGFRHSVPYINAHRGKTFVIMLGGEAIEHENFSSIVNDIGLLHSLGIRLVVVYGARPQIDANLAEHHHEPVYHKHTRVTDAKTLELVKQAAGLLQLDITARLSMSLGNTPLQGAHINVVSGNFIIAQPLGVDDGVDYCHSGRIRRIDEDAIHRQLDSGAIVLLGPVAVSVTGESFNLTSEEVATQLAIKLKAEKMIGFCSSQGVMSDDGDIISELFPNEAQARLETLEAAGDYHSGTVRFLRGAVKACRSGVRRCHLISYQEDGALLQELFSRDGIGTQIVMESAEQIRRATINDIGGILELIRPLEQQGILVRRSREQLEMEIDKFTIIQRDNLTIACAALYPFPEEKIGEMACVAVHPDYRSSARGEVLLQRIATQAKQMGLSKLFVLTTRSIHWFQERGFAPVDIDLLPESKKQMYNYQRRSKVLMADLT
>NC_023032.1|WP_023898070.1|843171_843927_-|flap-endonuclease-Xni
MPVHLLIVDALNLIRRIHAVQGTPCVDTCLHALEQLIGNSQPTHAVAVFDDEARAQGWRHQLLPDYKAGRPPMPDDLHHEMPALREAFTRRGVPCWHVEGNEADDLAATLAVKVAAAGHEATIVSTDKGYCQLLRPEIRIRDYFQKRWLDAPFIESEFGVSPGQLADFWGLAGISSSKIPGVAGIGPKSATQLINDFGTLEALYERLDEVPEKWRKKLEAHRESAFVCRAVATLKTDLQLDGNLQQLRLHG
>NC_023032.1|WP_023898071.1|844058_845426_-|L-serine-ammonia-lyase
MISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIAQNLLHKTTKVVVDVYGSLSLTGKGHHTDIAIIMGLAGNLPDTVDIDAIPGFIQDVNTHSRLMLANGAHEVAFPVDQCMNFHADNLALHENGMRITALVGDDVLYSQTYYSIGGGFIVDEAHFGQTQTSAINVPYPYNTAADLQRHCRETGLSLSGLMMKNELALHSKEELEAHFSQVWDVMRAGIERGTTTEGVLPGKLRVPRRAAALRRMLVSHDKNDADPMNVVDWINMFALAVNEENAAGGRVVTAPTNGACGIVPAVLAYYDKFIREVNANSLARYLLVASAIGSLYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGGSPAQVCIAAEIAMEHNLGLTCDPVAGQVQVPCIERNAIASVKAVNAARMALRRTSEPRVCLDKVIETMFETGKDMNARYRETSRGGLAVKVVACD
>NC_023032.1|WP_041461038.1|845492_846779_-|HAAAP-family-serine/threonine-permease
METTQTVNVATAAKSSAWRKTDTMWMLGLYGTAIGAGVLFLPINAGVGGLIPLIIMAILAFPMTFFVHRALTRFVLSGKNPGEDITEVVEEHFGVGAGKVITLLYFFAIYPILLMYSVAITNTVDSFITHQLGLASPPRAILSLILIVGMMTIVRFGEQMIVKAMSVLVFPFVAVLMLMACFLIPNWSGAALETLSFSHASTGNGLLMTLWLAIPVMVFSFNHSPIISAFAVAKREEYGAEAEKKCSRILAYAHIMMVVTVMFFVFSCVLSLSPENLAEAKAQNITILSYLANHFNVPVIAWVGPVIAIIAITKSFLGHYLGAREGFNGMVIKSLRSRGKTIEVSKLNRITALFMLITTWIVATLNPSILGMIETLGGPIIAMILFLMPMYAIARVPAMRKYSGHISNVFVTIMGLIAISAIFYSLFS
>NC_023032.1|WP_004388155.1|847229_848594_-|LOG-family-protein
MITHISPLGSMDLLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSQTDNSKALLSRFENFDINVLRRERGVKLELINPPEEAFVDGQIIRSLQANLFAVLRDILFVNGQIHNAGRFQHLNLTDSIHITNLVFSILRNAKALHVGEAPNMVVCWGGHSINETEYLYARRVGNQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKEGRFIGMTEPSIIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPHNADQVLPLILTGPKESADYFRVLDDFIVNTLGEKARRHYRVIIDDPAEVAREMKKAMPLVKECRRETGDAYSFNWAIRISPDLQVPFEPTHENMANLKLYPDQPTEILAADLRRAFSGIVAGNVKEVGIRAIEKYGRYKIHGDAQMMKRMDDLLQGFVAQHRMKLPGSAYIPCYEICT
>NC_023032.1|WP_023898073.1|848711_849557_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MTSYENHQALHGLTLGKSTDYRDVYDASLLQPVPRSLNRDPLGLRADALPFHGADIWTMYELSWLNRNGLPQVAIGQVEINATSVNLVESKSFKLYLNSFNQTRFDSLDAVRETLERDLRACAQGDVSVTLRRLEDVEGEPVARFSGDCIDNQDIEITDYEFDAALLSGAAGEETVEETLVSHLLKSNCLITHQPDWGSVQIRYRGPKICREKLLRYLVSFRHHNEFHEQCVERIFNDITRFCQPEQLSVYARYTRRGGLDINPWRSNCDFTPATGRLARQ
>NC_023032.1|WP_007777783.1|849626_850172_+|SecY-interacting-protein
MQNEVQQALASFSARYCEAWRQQRGSLPVSEEYIGISSPCIVSTHPDAVEWQPQPFTPEDSLGAVEKALDIVIQPDAHAFYVSQYAGDMAARHDELALTLLQAWSQDDFRRVQENLIGHLVTQKRLKLSPTVFIATLDSELDVISLCNLTGEVVRETLGTRKRRVLAPSLSAFLNQLDPLV
>NC_023032.1|WP_007777781.1|850811_851141_+|YqcC-family-protein
MERHQRVRQQLQRVEQVLRHHQQWQSAAPHSSAFESTQPFCMDTLEPYEWLQWVLIPRLHALLDAGAPLPQAFAVAPYYEVALEASYPARDAVLVTLVELDALFAGDDA
>NC_023032.1|WP_007777780.1|851137_851935_+|tRNA-pseudouridine(65)-synthase-TruC
MSLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMGLSSEAGRRLAQQFEQHQIQKRYHAIVRGWLTDSAVLDYPLVEELDKIADKFSRQDKEPQPAVTHYHGLATTTQPVAVGRYDSVRYSLVEMLPQTGRKHQLRRHMAHLRHPIIGDSKHGDLRQNRAAAEHFGCNRLMLHASELTLTHPFTGAPLTIRAGLDDVWRQALAHFGWQAHFPAADGVEFPVTNPQDEGSLHSKGE
>NC_023032.1|WP_007777778.1|851938_852388_+|flavodoxin
MASVGIFVGTMYGNSLLVAEEAQAILKKQGHDATVYEDPDITDWERYGDGYALIVTSTTGQGDLPDSIVPLYQAIKDQHGHQPTRRYGLIALGDSSYSHFCGGGKKFDALLQEHAAQRVGEVLYIDAAEYPEPETLSSPWVEQWSALLK
>NC_023032.1|WP_023898075.1|852422_855182_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTFIIGLLLSVFFVVHRYHDLQRQLEDAGASIIEPLAVASEYGMSLQNKESVRQLVSVLHRRHSEIVRAISVYDRHNKLFVTSNYQLDPSELQLPDGASMPTSLGVTRRDDILILRTPVVSERYSPDESEISDAKLSANPLGYVALELDLKSVRLQQYQEIAISLLMMLICMACAVLFAWRLMRDVTAPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQRDHLNTIERSANNLLSIINDVLDFSKLEAGKLLLESIPFPLRTTLDEVVTLLAHSAHDKGLELTISVRHDVPDNVIGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWFHISLDLNPNALVDRHATDMLAGMRLAYVEKNEAAAKSTRDLLANTPLTVVYSPDLATLPQAHYDILLYAAPVTDREPLSMRHDQLARAATLTDCLILALPCHAQINAEMLKKEGASACLLKPVTATRLMPLLLEHCRLIHARELPEGDQSRMPMTVMAVDDNPANLKLIGALLEDMVQHVVLCESGHQAVERAMLQPFDIILMDIQMPDMDGIHACELIRKLPQQQHTPIIAVTAHAMSGQKEKLLSAGMNDYLAKPIEEEKLRALLLRYQPGYAVPVAASAPVTTPLEGNPDATLDWSLALRQAANKPDLARDMLQMLLAFLPEVRNRVEEQLVGENPGGLTELIHKLHGSCGYSGVPRLKNLCQLIEQQLRSGVPASDLEPELLELLDEMDNVAREAQRISGI

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Crispr_ID: NC_023032_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023032_8

894263-894380

Orphan

Consensus_repeat	Method
GTAGGGTGGGTAAGCGAAGCGCACCCACCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_023032_8

>merge|NC_023032|8|894263-894380|CRISPRCasFinder
GTAGGGTGGGTAAGCGAAGCGCACCCACCATTCATGCCCTGCCATCACCAACGACATCCACCCTACGAAACAAAGGCGCTGAAATTATGTAGGGTGGGTAAGCGAAGCGCACCCACCA

>NC_023032|8|8|894263-894380|CRISPRCasFinder
GTAGGGTGGGTAAGCGAAGCGCACCCACCA	TTCATGCCCTGCCATCACCAACGACATCCACCCTACGAAACAAAGGCGCTGAAATTAT
GTAGGGTGGGTAAGCGAAGCGCACCCACCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_023032.1\|WP_007777670.1\|902969_903692_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NC_023032.1\|WP_007870378.1\|900992_901205_-\|KTSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|379296
NC_023032.1\|WP_007777677.1\|899256_900924_+\|Tar-ligand-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NC_023032.1\|WP_007777726.1\|888531_888906_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226867
NC_023032.1\|WP_007763606.1\|885534_886161_+\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	unknown	unknown	gnl\|CDD\|178974
NC_023032.1\|WP_007777727.1\|887484_888477_+\|RNA-polymerase-sigma-factor-RpoS	unknown	unknown	gnl\|CDD\|235548
NC_023032.1\|WP_041461041.1\|893930_894167_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226782
NC_023032.1\|WP_007777681.1\|897517_897919_+\|BPSL0067-family-protein	unknown	unknown	unknown
NC_023032.1\|WP_004387895.1\|903806_904889_+\|lytic-murein-transglycosylase-B	unknown	unknown	gnl\|CDD\|236754
NC_023032.1\|WP_023898090.1\|892490_893921_+\|UbiD-family-decarboxylase	unknown	unknown	gnl\|CDD\|223121
NC_023032.1\|WP_007777675.1\|901377_902145_+\|basic-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270342
NC_023032.1\|WP_032968382.1\|902218_902983_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NC_023032.1\|WP_007777720.1\|891301_891712_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_023032.1\|WP_007777679.1\|898343_899048_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NC_023032.1\|WP_007777680.1\|897905_898271_+\|hypothetical-protein	unknown	unknown	unknown
NC_023032.1\|WP_007777728.1\|886288_887425_+\|murein-hydrolase-activator-NlpD	unknown	unknown	gnl\|CDD\|236782
NC_023032.1\|WP_023898088.1\|890393_891299_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NC_023032.1\|WP_023898092.1\|894387_896949_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NC_023032.1\|WP_071602995.1\|891883_892501_+\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|223241
NC_023032.1\|WP_007777725.1\|888902_890285_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794

Protein	Function_ID	Function_description	E-value
NC_023032.1\|WP_007777670.1\|902969_903692_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.45807e-153
NC_023032.1\|WP_007777677.1\|899256_900924_+\|Tar-ligand-binding-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	0
NC_023032.1\|WP_007777726.1\|888531_888906_-\|hypothetical-protein	gnl\|CDD\|226867	COG4460, COG4460, Uncharacterized protein conserved in bacteria [Function unknown].	1.21053e-27
NC_023032.1\|WP_007763606.1\|885534_886161_+\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	gnl\|CDD\|178974	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase.	4.01199e-131
NC_023032.1\|WP_007777727.1\|887484_888477_+\|RNA-polymerase-sigma-factor-RpoS	gnl\|CDD\|235548	PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated.	0
NC_023032.1\|WP_041461041.1\|893930_894167_+\|hypothetical-protein	gnl\|CDD\|226782	COG4332, COG4332, Uncharacterized protein conserved in bacteria [Function unknown].	0.00754663
NC_023032.1\|WP_007870378.1\|900992_901205_-\|KTSC-domain-containing-protein	gnl\|CDD\|379296	pfam13619, KTSC, KTSC domain. This short domain is named after Lysine tRNA synthetase C-terminal domain. It is found at the C-terminus of some Lysyl tRNA synthetases as well as a single domain in bacterial proteins. The domain is about 60 amino acids in length and contains a reasonably conserved YXY motif in the centre of the sequence. The function of this domain is unknown but it could be an RNA binding domain.	3.53376e-14
NC_023032.1\|WP_004387895.1\|903806_904889_+\|lytic-murein-transglycosylase-B	gnl\|CDD\|236754	PRK10760, PRK10760, murein hydrolase B; Provisional.	0
NC_023032.1\|WP_023898090.1\|892490_893921_+\|UbiD-family-decarboxylase	gnl\|CDD\|223121	COG0043, UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases [Coenzyme metabolism].	2.00457e-169
NC_023032.1\|WP_007777675.1\|901377_902145_+\|basic-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270342	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold. This group includes the periplasmic substrate-binding protein ArtJ of the ATP-binding cassette (ABC) transport system from the thermophilic bacterium Geobacillus stearothermophilus, which is specific for arginine, lysine, and histidine. ArtJ belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.13999e-92
NC_023032.1\|WP_032968382.1\|902218_902983_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.79636e-79
NC_023032.1\|WP_007777720.1\|891301_891712_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.20091e-19
NC_023032.1\|WP_007777679.1\|898343_899048_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	2.39017e-22
NC_023032.1\|WP_007777728.1\|886288_887425_+\|murein-hydrolase-activator-NlpD	gnl\|CDD\|236782	PRK10871, nlpD, murein hydrolase activator NlpD.	0
NC_023032.1\|WP_023898088.1\|890393_891299_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.08725e-58
NC_023032.1\|WP_023898092.1\|894387_896949_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NC_023032.1\|WP_071602995.1\|891883_892501_+\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|223241	COG0163, UbiX family flavin prenyltransferase [Coenzyme transport and metabolism].	2.86509e-104
NC_023032.1\|WP_007777725.1\|888902_890285_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	4.74567e-46

>NC_023032.1|WP_041461041.1|893930_894167_+|hypothetical-protein
MICPRCADGTIEIMVTSPVKGVWTVYQCQHCLYTWRDTEPLRRTSREHYPEAFRMTQADIDNAPEVPTVPPLLAEGKR
>NC_023032.1|WP_023898090.1|892490_893921_+|UbiD-family-decarboxylase
MAFDDLRSFLQALEEQGQLLKISEEVQAEPDIAAAANATGRIGEGAPALWFDNIRGFTDARVAMNTIGSWPNHAISLGLPPATPVKQQIEEFIRRWDTFPVAPERRDNPPWAENRVDGDDINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDHFGKQNVGIYRMEVKGKRKLGLQPVPMHDIALHLHKAEERGEDLPVAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIATAPLTGFDVPWGSEVILEGVIEGRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRTKPIFESLYLGMPWTEIDYLIGPATCVPLYQQLKAEFPEVQAVNAMYTHGLLAIISTKKRYGGFARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFDLPQVMWALSSKVNPAGDLVQLPNMSVLELDPGSSPAGITDKLIIDATTPVAPDNRGHYSQPVKDLPETPQWVEKLTAMLANRKK
>NC_023032.1|WP_071602995.1|891883_892501_+|UbiX-family-flavin-prenyltransferase
MRIIVGMTGATGAPLGVALLQALKAMPEVETHLVMSKWAKTTIELETPFSWQDVAGLADVVHSPADQAATISSGSFRTDGMVIIPCSMKTLAGIRAGYADGLVGRAADVVLKENRKLVLVPRETPLSTIHLENLLALSRMDVAIVPPMPAWYNHPATIDDIINHIVARVLDQFGLDSRNARRWQGLNPAKTADTHSSRGGNTHGV
>NC_023032.1|WP_007777720.1|891301_891712_-|MarR-family-transcriptional-regulator
MAVNQQAFHLLRQLFQQHTAQWQLALPELTKPQYAVLRSIAENPGIEQVALIEAAVSTKATLAEMLSRMESRGLVRRESAPEDKRRRFIYLTPEGEALLHASIPKGDAVDEAFLGKLNAEERALFATLITRMIDKP
>NC_023032.1|WP_023898088.1|890393_891299_+|LysR-family-transcriptional-regulator
MLNLSRLAMFVAVVDAKSFTGAAAALGQTKAVVSFNIRQLESELGVTLLLRSTRRLTLTDAGERLYQRSLLLLKDAGALLEDVQASHDGFSGELRVTTTPEYATHVVGPALAAFSRAHPALRIRHFSSSQHADLISERVDVAIRLGTLQDSAYRAALISRFDIFPVASPAWLERHPISTPEALSQADWLLHTRLASPLRWELTGPHNETLWFEITRPPVIAADGAGALMTFALEGCGVALLPAWLVKTALEEESLVRLLPAYRFPAQGVYAVYPDARHVSGKVRGFIDFLRAREAQAAAGK
>NC_023032.1|WP_007777725.1|888902_890285_-|MFS-transporter
MTYRNRVTLIYLLGFFLDLINMFIAAVAFPAIGDALHASVTQLSWISNGYIAGLTVVIPLSAWLTQRLGARRLFLLSLALFTVATAACGLATSLESLIFWRVIQGAGGGVLIPVGQALAWQLFAKHERAGLSSAVMLTGLLAPALSPVAGGIIVQTAGWQWVFLASLPLSLLALVMAFCWLRPDAPARDKRPLDTISVITGAGGLLLVLFGLNGLSEKTAPWLAAAGLASGIVLITLMLRRCRRHPAPLLRVHLLGEPLMRFSMLVYQCVPGMFIGVNVVGMFWLQTVAGLSPAASGALMVPWSVASFMAISATARLFNRLGPRPLISLGCLLQAGGIVLLTQTDAQSPWALLVTAFFLMGAGGSLCSSTAQSSAFLHTANADMPDASAVWNINRQLSFCFGVTLVSLALNALLTWLSPLTAWQTTFTLAAALTLVPLIFAWRLPRQAVTLSFVEEKEKR
>NC_023032.1|WP_007777726.1|888531_888906_-|hypothetical-protein
MNRWFKEVLDAHVAIERWLGRGEGDVQALLGRFSPDYSMIPLNGAPLDRHMLNAFFTGAGGSKPGLEIQMDALSVIAEWPDGAVVGYRETQRIAQESTVRWSTVVFELSQGEPRWRHLHETRQA
>NC_023032.1|WP_007777727.1|887484_888477_+|RNA-polymerase-sigma-factor-RpoS
MNQNTLKVHDLNEDAEFDENGVEAFDEKALVEEEPSDNDLAEEELLSQGSTQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRSDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKDNGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQGQGLNIEALFRE
>NC_023032.1|WP_007777728.1|886288_887425_+|murein-hydrolase-activator-NlpD
MSAGSPTFTARRVAALSLISLCLAACNSNNSSAPAPVSSVGGSTSSAEASSGAGGGMIMPPSNISTQASQPQIQPAPVQPQISQPRQAQAIPEEPVQTQNGRIVYNRKYGNIPKGSYAGGSTYTVKRGDTLFYIAWITGNDFRDLAQRNHIEAPYSLNVGQTLQVGNASGTPITGGNAITQADASAQGIVSKPAQNTSTVVASKPTIIYSEDSGEQSANKMLPGNVSSGAVVAPSTAPAVSTQEPTVSSTTNSAPVATWRWPTEGNVIENFSAAEGGNKGIDIAGSKGQAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSSGTSSTRLHFEIRYKGKSVNPLRYLPQR
>NC_023032.1|WP_007763606.1|885534_886161_+|protein-L-isoaspartate(D-aspartate)-O-methyltransferase
MVNNRVQTLLNQLRAQGIKDERVLEALSRVPREKFVDEAFEHKAWENVALPIGSGQTISQPYMVARMTELLTLTPASRVLEIGTGSGYQTAILAHLVHHVCSVERIKSLQWHARRRLKQLDLHNISTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALLSQLDEGGILVLPVGDEQQVLKRVRRRGSEFIIDTVEAVRFVPLVKGELA
>NC_023032.1|WP_023898092.1|894387_896949_-|DNA-mismatch-repair-protein-MutS
MSTSETFDAHTPMMQQYLKLKAQHPDILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGVPHHAVENYLAKLVNLGESVAICEQIGDPAMSKGPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRVSEPQDRETMAAELQRTNPAELLYAEDFAEMSLIEGRRGLRRRPLWEFELDTARQQLNLQFGTRDLVGFGVENAPRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDGIIMDAATRRNLEITQNLAGGMENTLASVLDCTVTPMGSRMLKRWLHMPVRDAAVLRHRQQAIAALMEYSADIQPVLRQVGDLERILARLALRTARPRDLARMRHAFQQLPTLNTLLGDIDAEYVQTLREQMGDFAELRDLLERAIIEAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDRLEIREREKLGIDTLKVGFNAVHGYFIQVSRGQSHMVPIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYDELFDLLLPHLAELQKSAAALAELDVLTNLAERADTLNYHCPTLTDKPGIRLVEGRHPVVERVLNEPFIANPLSLSPQRRMLIITGPNMGGKSTYMRQTALIVLMAYIGSFVPAEQAEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLVLMDEIGRGTSTYDGLSLAWACAESLANRIKALTLFATHYFELTQLPEKMEGVANVHLDAIEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESLSGNAAATQVDGTQMSLLAAAEETSPAVEALENLDPDSLSPRQALEWIYRLKSLV
>NC_023032.1|WP_007777681.1|897517_897919_+|BPSL0067-family-protein
MAYIANTPSAYVGQSVGNGQCVAYTQKAANMPRTVAWRRGALVKGNMSIAPGTAIATFDGNGRYGNHTDGSSHAAIYLGQDASGIVVLDQWMTHRTLPNGQRVATPHAVSKRIIRFHKAPRAENNGDNYYVVE
>NC_023032.1|WP_007777680.1|897905_898271_+|hypothetical-protein
MLWSKTLLLSAGLFLSVTGAQATVTLCPQYPTAQDKTHVLDDASLFVGPPEGLVDLMPDNDSDTVWTLPDYQDEAKKSKTSLYFVCLYKNTKQTVNLIVPATAKKCSVAYDKNSKLIAACE
>NC_023032.1|WP_007777679.1|898343_899048_-|GNAT-family-N-acetyltransferase
MKELNSFGQYVGQPVTEWTPRELPQKKMFAGHFCHLEPVSVRHALALHHAWHSIDDTRDWTYLTDERPPTLTATEYYLRRLEAAPDAWYFTVLENISGQPTGTLCLMNVDKTHGVIEIGNVNWSPAMKRTHYGTEAIYLLLAYVFEELKYRRCEWKTDELNTPAIQAAQRLGFIYEGTFRECQVRKGRNSNVNWYSIVEAEWPHHAKTLRAWLRPENFNDRGRQIKHLEEFKDR
>NC_023032.1|WP_007777677.1|899256_900924_+|Tar-ligand-binding-domain-containing-protein
MIKNIKVVSGIIIILLTFTVLQMVTGSLFYSAVNNDRNNFQNANLLNFQQEQLGDSFQTLVKTRVTVNRVAIRFLKNQRDPASLAAINKLLATASTSLGKAEKHFALYKDSPRLKGQDEATASKIAEKYQALHDTLQASIGYLSANNYEAYGNLDAQKAQDEMEEIYTTWRAQNTTLLQAAAQENQQSFTGMLWTLGVIAVIVVLAIATIWQGLRHLLLGPLRDAMEHIRAIAGGDLTRQIAVGGRNEMGQLAASLQEMQQALAGTVTAVRDSSESIYTGAGEISAGSNDLSARTEQQAASLEETAASMEQLTATVKQNSDNARQASQLAKNASETADKGGRVVDNVVQTMKSIAESSQQIAHITSVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLASRSANAAKEIKALIENSVNRVDTGSGQVQEAGDTMKEIVQAVTRVTDIMGEIASASDEQSRGIEQVSLAVSQMDSVTQQNAALVQESAAAAAALEDQAEQLRQAVAAFKVSRGVVSTPARTGAAPLARMEPVKPALATSAGSDNWETF
>NC_023032.1|WP_007870378.1|900992_901205_-|KTSC-domain-containing-protein
MKRHPVQSRTFKSAGYDPTCSIMEIEYANGRVEQFLGVPAKTWQTFLMSNEKESWFNSNVKSSFFKVSVS
>NC_023032.1|WP_007777675.1|901377_902145_+|basic-amino-acid-ABC-transporter-substrate-binding-protein
MVKSLLKAGLLMAALAGSAFAAQETYIVGAGGTYRPFEFENSQKQLEGFDIDIIKAIAKAENFNVKLVNTPWEGIFATLGSGDRDIIISGITITDKRKQMVDFSAPYFPAEQSIVVPADSKVDSLAALKNEKVGVVNSSTGDIVVSDALGKNNTAIKRFDNTPLMLQELFEDGVSTAVGDVGVVKYYIKQHPEKQFKLVPDAKFERQYFGIAVAKGNDELRDKINAGLAKIVADGTYAKIYKAWFDDNVPTLPAQ
>NC_023032.1|WP_032968382.1|902218_902983_+|amino-acid-ABC-transporter-permease
MSGFHWEIIQEYGPLFMQGAWMTIKCTIICVILGTLWGLTLGLGRMAHAEHGPWKYVLRYLVQFPVRFYVSAFRGTPLFVQIMVVHFALVPLFINPRDGWLVESGLMTSEFARMLRSDYGAFLSCIVAITLNAGAYVSEIFRAGIQSIDRGQMEASRALGMPWWKTMRKVILPQAFRRILPPLGNNAIAIVKDSSLASAIGLADLAYAARTVSGAYATYWEPYLTISLVYWVITFLLSQLVARLEKRFGKSDSR
>NC_023032.1|WP_007777670.1|902969_903692_+|amino-acid-ABC-transporter-ATP-binding-protein
MIHVKNLHKHFGASHVLRGINCDIKPEEVVCVIGPSGSGKSTFLRCLNALETAEEGEILVNGFAVHDRNADVNQLRAGVGMVFQRFNLFPHMTVLENLIMAPMSLKGMKRAQAVTLAEGLLAKVGLSDKRDAWPASLSGGQQQRVAIARALAMNPSVMLFDEPTSALDPELVGEVLAVMKNLAEEGMTMVIVTHEMGFAREVADRVIFIDSGVIQEEGPPAQLFTAPQNPRTAAFLSKVL
>NC_023032.1|WP_004387895.1|903806_904889_+|lytic-murein-transglycosylase-B
MLKRRYVALLPLMMALAACSSKPKSQSATTQTAGASQGGFLLQPQHDMLLPTGDFTGNPAAENFINMMVSKHGFNRQQLQEVFSQTKRLDYVLRLMDRQAPTTQPAPGPNGAWLRYRNKFITPDNVQNGVAFWNQYQDALNRAWQVYGVPPEIVVGIIGVETRWGRVMGKTRIIDALATLAFNYPRRADYFAGELETFLLMSRDEGDDPLALKGSFAGAMGYGQFMPSSYKEYAVDFNGDGHINLWDPEDAIGSVAHYFQQHGWVKGDLVAVPANGQAPQLENGFKTKYSVGQLAAAGLTPQQPLGDHTEASLLRLDIGSGYQYWYGLPNFYAITRYNHSTHYAMAVWQLGQAVALARVQ

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Crispr_ID: NC_023032_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023032_9

1153696-1153819

Orphan

Consensus_repeat	Method
GTTAACGGCGGGTGCGCAGGCTTACCCGCCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_023032_9

>merge|NC_023032|9|1153696-1153819|CRISPRCasFinder
GTTAACGGCGGGTGCGCAGGCTTACCCGCCCTGCATTGAAGTGCTTTTTCGTAGGTTTTGTAGGGTGGGTAAGCGCAGCGCACCCACCCGACGTTAACGGCGGGTGCGCAGGCTTACCCGCCCT

>NC_023032|9|9|1153696-1153819|CRISPRCasFinder
GTTAACGGCGGGTGCGCAGGCTTACCCGCCCT	GCATTGAAGTGCTTTTTCGTAGGTTTTGTAGGGTGGGTAAGCGCAGCGCACCCACCCGAC
GTTAACGGCGGGTGCGCAGGCTTACCCGCCCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_023032.1\|WP_023898223.1\|1148165_1150160_-\|transketolase	unknown	unknown	gnl\|CDD\|183723
NC_023032.1\|WP_007777138.1\|1145940_1146885_+\|hypothetical-protein	unknown	unknown	unknown
NC_023032.1\|WP_023898224.1\|1151412_1153692_+\|NADP-dependent-oxaloacetate-decarboxylating-malate-dehydrogenase	unknown	unknown	gnl\|CDD\|235976
NC_023032.1\|WP_023898231.1\|1160387_1161992_+\|(2,3-dihydroxybenzoyl)adenylate-synthase	unknown	unknown	gnl\|CDD\|236803
NC_023032.1\|WP_032986327.1\|1159210_1160377_+\|isochorismate-synthase-EntC	unknown	unknown	gnl\|CDD\|184977
NC_023032.1\|WP_032970457.1\|1155677_1156685_-\|Fe(3+)-siderophore-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182464
NC_023032.1\|WP_007777102.1\|1162867_1163620_+\|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase-EntA	unknown	unknown	gnl\|CDD\|236190
NC_023032.1\|WP_032968345.1\|1147107_1147476_+\|hypothetical-protein	unknown	unknown	unknown
NC_023032.1\|WP_100207200.1\|1140448_1140508_+\|protein-YpfM	unknown	unknown	unknown
NC_023032.1\|WP_007777142.1\|1144115_1144691_+\|GDP-mannose-pyrophosphatase-NudK	unknown	unknown	gnl\|CDD\|184971
NC_023032.1\|WP_023898233.1\|1162001_1162871_+\|isochorismatase	unknown	unknown	gnl\|CDD\|224452
NC_023032.1\|WP_012124074.1\|1153900_1154692_-\|iron-enterobactin-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182336
NC_023032.1\|WP_023898221.1\|1144821_1145865_+\|DUF1176-domain-containing-protein	unknown	unknown	gnl\|CDD\|369032
NC_023032.1\|WP_007893829.1\|1150180_1151131_-\|transaldolase	unknown	unknown	gnl\|CDD\|183458
NC_023032.1\|WP_023898220.1\|1140615_1143732_-\|multidrug-efflux-RND-transporter-permease-AcrD	unknown	unknown	gnl\|CDD\|182544
NC_023032.1\|WP_007777111.1\|1158062_1159022_-\|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|236806
NC_023032.1\|WP_023898228.1\|1156792_1158037_+\|enterobactin-transporter-EntS	unknown	unknown	gnl\|CDD\|236700
NC_023032.1\|WP_012124082.1\|1163620_1164034_+\|proofreading-thioesterase-EntH	unknown	unknown	gnl\|CDD\|182337
NC_023032.1\|WP_032968344.1\|1147475_1147973_+\|YbjP/YqhG-family-protein	unknown	unknown	gnl\|CDD\|372360
NC_023032.1\|WP_032983623.1\|1154688_1155681_-\|iron-enterobactin-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182463

Protein	Function_ID	Function_description	E-value
NC_023032.1\|WP_023898223.1\|1148165_1150160_-\|transketolase	gnl\|CDD\|183723	PRK12753, PRK12753, transketolase; Reviewed.	0
NC_023032.1\|WP_012124074.1\|1153900_1154692_-\|iron-enterobactin-ABC-transporter-ATP-binding-protein	gnl\|CDD\|182336	PRK10253, PRK10253, iron-enterobactin ABC transporter ATP-binding protein.	3.74343e-166
NC_023032.1\|WP_023898224.1\|1151412_1153692_+\|NADP-dependent-oxaloacetate-decarboxylating-malate-dehydrogenase	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
NC_023032.1\|WP_023898231.1\|1160387_1161992_+\|(2,3-dihydroxybenzoyl)adenylate-synthase	gnl\|CDD\|236803	PRK10946, entE, (2,3-dihydroxybenzoyl)adenylate synthase.	0
NC_023032.1\|WP_007777102.1\|1162867_1163620_+\|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase-EntA	gnl\|CDD\|236190	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated.	5.27924e-166
NC_023032.1\|WP_032986327.1\|1159210_1160377_+\|isochorismate-synthase-EntC	gnl\|CDD\|184977	PRK15016, PRK15016, isochorismate synthase EntC; Provisional.	0
NC_023032.1\|WP_007777142.1\|1144115_1144691_+\|GDP-mannose-pyrophosphatase-NudK	gnl\|CDD\|184971	PRK15009, PRK15009, GDP-mannose pyrophosphatase NudK; Provisional.	2.79453e-120
NC_023032.1\|WP_023898233.1\|1162001_1162871_+\|isochorismatase	gnl\|CDD\|224452	COG1535, EntB, Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism].	1.55531e-124
NC_023032.1\|WP_032970457.1\|1155677_1156685_-\|Fe(3+)-siderophore-ABC-transporter-permease	gnl\|CDD\|182464	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease.	1.01574e-162
NC_023032.1\|WP_023898221.1\|1144821_1145865_+\|DUF1176-domain-containing-protein	gnl\|CDD\|369032	pfam06674, DUF1176, Protein of unknown function (DUF1176). This family consists of several hypothetical bacterial proteins of around 340 residues in length. Members of this family contain six highly conserved cysteine residues. The function of this family is unknown.	3.72516e-127
NC_023032.1\|WP_007893829.1\|1150180_1151131_-\|transaldolase	gnl\|CDD\|183458	PRK12346, PRK12346, transaldolase A; Provisional.	0
NC_023032.1\|WP_023898220.1\|1140615_1143732_-\|multidrug-efflux-RND-transporter-permease-AcrD	gnl\|CDD\|182544	PRK10555, PRK10555, multidrug efflux RND transporter permease AcrD.	0
NC_023032.1\|WP_007777111.1\|1158062_1159022_-\|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein	gnl\|CDD\|236806	PRK10957, PRK10957, iron-enterobactin transporter periplasmic binding protein; Provisional.	0
NC_023032.1\|WP_023898228.1\|1156792_1158037_+\|enterobactin-transporter-EntS	gnl\|CDD\|236700	PRK10489, PRK10489, enterobactin transporter EntS.	0
NC_023032.1\|WP_012124082.1\|1163620_1164034_+\|proofreading-thioesterase-EntH	gnl\|CDD\|182337	PRK10254, PRK10254, proofreading thioesterase EntH.	6.64474e-92
NC_023032.1\|WP_032968344.1\|1147475_1147973_+\|YbjP/YqhG-family-protein	gnl\|CDD\|372360	pfam12883, DUF3828, Protein of unknown function (DUF3828). This is a family of bacterial proteins of unknown function.	6.57467e-31
NC_023032.1\|WP_032983623.1\|1154688_1155681_-\|iron-enterobactin-ABC-transporter-permease	gnl\|CDD\|182463	PRK10440, PRK10440, iron-enterobactin ABC transporter permease.	1.24507e-179

>NC_023032.1|WP_023898224.1|1151412_1153692_+|NADP-dependent-oxaloacetate-decarboxylating-malate-dehydrogenase
MDEQLKQSALDFHEFPVPGKIQVSPTKPLATQRDLALAYSPGVAAPCLEIAADPLAAYKYTARGNLVAVISNGTAVLGLGNIGALAGKPVMEGKGVLFKKFAGIDVFDIEIDEHDPDKVVDVVAALEPTFGGINLEDIKAPECFYIEKKLRERMNIPVFHDDQHGTAIICTAAVLNGLRVVQKNISDVRLVVSGAGASAIACMNLLVALGMQKHNIVVCDSKGVIYKGREENMAETKAAYAIDDNGKRTLGEVIEGADIFLGCSGPKVMTQEMVKKMADSPLILALANPEPEIMPPLAKAVRPDAIICTGRSDFPNQVNNVLCFPFIFRGALDVGATAINEEMKLAAVHAIAELAHAEQSEVVASAYEDQELSFGPDYIIPKPFDPRLIVTIAPAVAKAAMDSGVATRPIEDFDAYRDKLTEFVYKTNLFMKPVFNQARKDPKRVVLTEGEEPRVLHATQELITLGLAKPVLVGRPGVIEMRLKKLGLQIEAGKDFEIVNNESDPRFKEYWNEYYSIMKRRGITQEQAQRAVIGNSTVIGAIMVHRGEADAMICGTIGDYHEHFSVVQQIFGYRDGVKAAGAMNALLLPSGNTFIADTYVNDDPTPEQLAEITVMAAETVRRFGIEPKVALLSHSNFGSSDSPAASKMRETLQLVRERAPDLMIDGEMHGDAALVESIRNDRMPDSPLKGSANILIMPNVEAARISYNLLRVSSSEGVTVGPVLMGVAKPVHVLTPIASVRRIVNMVALAVVEAQTNPL
>NC_023032.1|WP_007893829.1|1150180_1151131_-|transaldolase
MNQLDGIKQFTTVVADSGDIESIRNYQPQDATTNPSLLLKAASLEHYQHLFTDALEYGKKRGSTQKEQVAEASDKLAVNVGAEILKSIPGRVSTEVDARLSFDKEKSIAKARRLVELYQEQGIDKSRILIKLASTWEGIRAAEELEKEGIHCNLTLLFSFAQARACAEAGVYLISPFVGRIYDWYNTRKPMDPYVVDEDPGVKSVRNIYDYYKQHNYQTIVMGASFRRTEQILALAGCDRLTISPNLLKELQESDAPVARKLIPASQGFNRPQPMTEAEFRWEHNQDAMAVEKLAEGIRQFAVDQRSLEDLLAAKL
>NC_023032.1|WP_023898223.1|1148165_1150160_-|transketolase
MSRQLLANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWNDFLKHNPTNPTWYDRDRFILSNGHASMLLYSLLHLSGYDLPMEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAEKTLAAQFNRPGHEIVDHNTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVVHEIDGHDPEAIKRAIEEAKQVTDKPSLIICRTVIGFGSPNKAGKEESHGAALGEEEVALTRKQLGWNYPPFEIPDEVYKGWDAKEKGRQVEASWNEKFAAYQEAYPELAAEFNRRMGGEMPENWQQVTQEYIEKLQAEPAKIASRKASQNALNVYGPVLPELLGGSADLAPSNLTIWSGSTSLKEDPAGNYIHYGVREFGMTAIANGIAHHGGFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQAVEQLASLRLTPNFSTWRPCDQVETAVAWKAAIERHNGPTALILSRQNLAQIERSPQQLKDVARGGYILKDAGGKPDLILIATGSEVEIAVQAAEKLRGDGVAVRVVSLPSTDVFDAQDEAYRESVLPSDVSARVAVEAGIADYWYKYVGLKGAIVGMTGYGESAPAEKLFPYFGFTVENVVEKARNVLGK
>NC_023032.1|WP_032968344.1|1147475_1147973_+|YbjP/YqhG-family-protein
MRTAIVLCAFLLSACAVKPDQSAPTRVHSFYSTYLMSLTSSDNQYSPSDLREYVSADTLKRLEDIESISEQDLIGSDYFAYAQDYDPSWISALTVGAARPFMGGEVMPVWIGREGGKKLELEVFVRRESDIWKIYRVRDVTDNYEHPIFNAGAITRAKSAAEGGL
>NC_023032.1|WP_032968345.1|1147107_1147476_+|hypothetical-protein
MNWNKDVAISHLRSRALGHSHNECATFTREAIAAGGIRLERTLNAKDYGPALLRAGFHEVPPGSTLLSGDVAVIQPYPGGNPSGHMTMYDGTQWISDFRQRSMYPGPGYRAAQPAFKIYRMN
>NC_023032.1|WP_007777138.1|1145940_1146885_+|hypothetical-protein
MAYTQGLRAVLGLALAGLALSVSAAMTSQDERDANALVARWNEFKNHPSAQAGAALYGEQVSWYGKALARDVVIQENAAFVQKHPHYAQTIISNITLTEQDGQPLAVQATFVKQAGLEPQTPRNYPAQLTLTKQAAGWRISEETDWITEANRQKTRDYRLAGGRFNGTAKSYAWLTAHDPKTNGVCDESGDCECQLWNSDPAINPASIPSCIGGGVETLSHLDDSGRDRALIYPEWWSSAWRATYLYDVQQQQWVKAIPSFSMNLNVQEDVDGMSLIARDPQHPGQVIVAQAQWDEKTEDIVINKSAETLKVLK
>NC_023032.1|WP_023898221.1|1144821_1145865_+|DUF1176-domain-containing-protein
MLFRLLSLLSCSLLLASPLYAAPAQKIFSDWQVTCNNQNFCTARNVGNHQELVMTLSRSAGAKTDASLRIETGKPEAAVSKAPPLAPRLLLDGKTLVPAGSKWRAAPRRLLTDDPATIIDFLDQIKESSVITLKDGPGRLSLDGLKAALLFIDAQQKRVGSETAWIKKGNNPPLSVPPAPAIRGVKITNPTPTPLSHDELNELLDYGTWRMTNSQCSLDPMRREVRISALSDDTALMIISCEAGAYNTVDLAWLVSRQKPFASRMVRLRLPFVPADKEQELELMNASFDEKTKELITLSKGRGLGDCGVATRWRFDGQRFRLVRYAEEPSCDNWHGPDAWPTLWVTQ
>NC_023032.1|WP_007777142.1|1144115_1144691_+|GDP-mannose-pyrophosphatase-NudK
MSLNVELIKDKILSENYFVLRNITYDLTRKDGEVVRHKREVYDRGNGAAVLLYNREKKSVVLIRQFRVATWVNGNPDGMLIEACAGLLDDDEPEVCIRKEAIEETGYRVNAAEKVFELYTSPGGVTELIHLFIAEYDDASRANEGGGVEDEEIEVLEMPFSEALEKVKQGVIRDAKTVLLLQHLQLRGIMD
>NC_023032.1|WP_023898220.1|1140615_1143732_-|multidrug-efflux-RND-transporter-permease-AcrD
MANFFIDRPIFAWVLAILICLTGTLAIFSLPVEQYPELAPPNVRITANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATVTLNFKAGTDPDEAVQQVQNQLQSALRKLPQAVQTQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQEPLSRINGVGDIDAYGSQYAMRIWLDPDKLTSFQLTTADVVAAIKSQNSQIAVGQLGGTPSVDNQALNATINAQSLLQTPEQFRAITLRVNQDGSTVTLGDVATVEMGAEKYDYLSRYNGKAASGLGVKLASGANEMETAQLVLNRLDELSHYFPHGLEYKVAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYSFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLSPRAATRKSMGQIQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSSMVLSVLVAMILTPALCATLLKPLKKGEHHGSRGFFSWFNRTFERSALRYESAVGKILQRSLRWILLYALLLGGMVFLFLRLPTSFLPQEDRGMFITSVQLPSGSPQQQTLKVVQHVERYFFEKEKANVTSVFATVGSGPGGNGQNVARMFVRLKPWEERDPDTGSADAIIERATQAFRHIKEARVFASSPPAISGLGSSAGFDMELQDHAGLGHDALMQARDRLLDMASQEPALTRVRHNGLDDSPQLQIDIDQRKAQALGVSIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQSAAKYRMLPEDITRWYVRNQAGTMVPFSAFATSRWETGSPRLERYNGYSALEIVGEAAPGVSTGTAMDIMEKLVSQLPTGFGLEWTAMSYQERLSGSQAPALYALSLLVVFLCLAALYESWTVPFSVMLVVPLGVIGALLATWLRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNSKGHELIAATLDACRQRLRPILMTSLAFIFGVLPMATSSGAGSASQHAVGTGVMGGMISATLLAVFFVPLFFVLIRRRFPLKPAPEE
>NC_023032.1|WP_100207200.1|1140448_1140508_+|protein-YpfM
MIEHELGNWKDFIEAMLRK
>NC_023032.1|WP_012124074.1|1153900_1154692_-|iron-enterobactin-ABC-transporter-ATP-binding-protein
MTMTSRLTGEALTLGYGDFRVADGLNVAIPDGKFTAIIGPNGCGKSTLLRTLSRLMKPLGGQVRLDGQAIQHFATKEVARRIGLLAQNASAPGDITVAELVARGRYPHQPLFTRWRDEDERAVQKAMAATGVTALADQSVDTLSGGQRQRAWIAMVLAQETSILLLDEPTTWLDISHQIDLLELLCTLNREQGYTLAAVLHDLNQACRYANHLIALRDGKIIAEGAPSEIVDAALIEAIYGLRCMIIEDPVAGTPLVVPLGRR
>NC_023032.1|WP_032983623.1|1154688_1155681_-|iron-enterobactin-ABC-transporter-permease
MKSVSPRLWLFCLLMLSLCTGLSLWALTQGAVTLEARKVLDALTGLAPRNVSLIVTEWRLPRVAMALLLGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSGVLVAMVLAGQHQSAIAFAAIAGGTLTAFVVWLLAWRNGIDTFRLIIIGIGVRAMLVAFNTWLLLQASLETALSAGLWNAGSLNGMTWGKTLPAAPLLVLALLASALLVRRMRLLEMGDDSACALGVAVERSRLLLMLTGVVLTAGATAMAGPISFVALVAPHIARRLSGTARFGLTQAALCGALLLLAADLCAQYLFTPYQLPVGTVTVCLGGIYLIALLIQESRRR
>NC_023032.1|WP_032970457.1|1155677_1156685_-|Fe(3+)-siderophore-ABC-transporter-permease
MSASRLSSRVVVLGSLSLLLLLMVALSLLVGAKSLPFSLVMDALTGTCRDADCTIVLDARLPRTLAGIVAGLSLGLAGALMQTLTRNPLADPGLLGVNSGASFAIVLGAALWGVSEPLHILALALCGALAATLVVAFTGSAGGGQLSPVRLTLAGVALAAVLEGLSGGIALLNPVVYDQLRFWQAGSLDIRTLTTLKAIAPVVLTGAVIALLLGRALNSLSMGADTATALGSRVARTQVFGLIAITLLCASATAVVGPIAFIGLMMPHLARWLVGADHRWSLPVTLLATPSLLLLADIIGRLVVPGELRVSVVSAFIGAPALIYLVRQRRGGASL
>NC_023032.1|WP_023898228.1|1156792_1158037_+|enterobactin-transporter-EntS
MNRHSLLLNLSLLKTHPAYRAVFLARFISILGLGLLGVAVPVQIQTLTGSPFQVGLAVTLTGAAMFIGLMTGGVLADRYERKTLILLARSTCGLGFIGLWINAMLPAPSVIAIYALGLWDGFFGAIGVTALLAATPAIVGRENLMQAGAITMLTVRLGSVISPLLGGVLLAWGGVAWNYALAALGTFLTLLPLLTLPALPAPQMQRQHPLRALADGLRFLAASPVVGGVALIGALLTMASAVRVLYPALANHWQMTSGEIGVLYAAVPLGAALGALTSGGLAHAPRPGRTLLASSVLALAAVSVFSLMPFWPLAFICLTLFGYLSGVSSLIQYQLIQTRTPDHMLGRINGLWTAQNVTGDAIGAAALGGMGAWLSPVSAASVGGIGLAIVTLALALLLAELRRLRQPPPEPAPH
>NC_023032.1|WP_007777111.1|1158062_1159022_-|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein
MTFTSALRAAFAASLLLLGISSVSQAAAWPRQVTDSRGVHTLEKAPQRIVSTSVTLTGSLLAIDAPVVASGATSPGNRVADDQGFLRQWGDIAKARHVERLYIGEPNAEAVAAQMPDLILVSATGGDSAQALYEQFSAIAPTLIINYDDKSWQALLTQLGEITGHEKQAAERIAQFDQQLAQAKAQMKLPPQPVSALVYNPAAHGANLWTAESAQGKLLGQLGFTLAPPPAAHGLTSMGKRHDIIQLGGENLAAGLNGETLFLFAADDKDAAALMRDPLLAHLPAVENKRVYALGTETFRLDYYSASLLLKRLEALFKQ
>NC_023032.1|WP_032986327.1|1159210_1160377_+|isochorismate-synthase-EntC
MDTSLAGERCDAAATLSSDSFFYMSPYRSFTTRGCFTRLETPAADGAERYSVFQTALRNAFDRARRQGIARPIVVGAIPFDTRKPSALFIPESYSETARGGYSLIENSAAPRVLSRKPLPDEETFMAMVARAAALTATPAVSKIVLSRLIDITTEQKPDSLALLARLVAQNPASFNFHVPLPDGGALLGASPELLLRKDGNTFSSLPLAGSARRHADAAQDKSAGQALLCSAKDRHEHELVTQAMRDVLAPRSQRLAMPGAPELITTPTLWHLATPVEGETRFADDNALSLACLLHPTPALSGYPHEAAKAYIAELEPFDRELFGGIVGWCDADGNGEWAVTIRCARLRENQVRLFAGAGIVPASDPASEWRETGVKLSTMLHVLGLH
>NC_023032.1|WP_023898231.1|1160387_1161992_+|(2,3-dihydroxybenzoyl)adenylate-synthase
MTIPYTRWPDDLAVRYRARGYWLDLPLTDILSRHAQSAATALIDGERRYSYRELDAAATRLAGALARRGLQRGDTALVQLGNVAEFYIVFFALLKIGVAPVNALFSHQRTELDAYARQIAPALLIADREHALFSDDAYITALQAQHSSLRMTLLRGDGLEALISETEADFTPTPSAADEVAFFQLSGGSTGTPKLIPRTHNDYYYSIRRSVEICEFSRETRYLCALPAAHNYPLSSPGALGVFFAEGCVVLARDPSATLCFPLIEAHQINVTALVPPAVSLWLQAIQEWGDNRQLASLKLLQVGGARLSDTLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDPDERIFTTQGRPMSPDDEVWVADENGNPLPRGETGRLMTRGPYTFRGYYNSPEHNASAFDENGFYCSGDLVAIDEQGYITVQGREKDQINRGGEKIAAEEIENLLLGHEAIVHAGLVSMEDSLLGEKSCAYIVTTRPVKAVEIRRFLRELGVADFKLPDRVERVDALPLTPVGKVDKKQLRLWLAARQPVSE
>NC_023032.1|WP_023898233.1|1162001_1162871_+|isochorismatase
MAIPKLNAYTLPTAADLPQNKVSWALEPPRAALLIHDMQEYFLNFWGENCPMIEPVVANIAALRAYCKAQGIPVYYTAQPNNQSDADRALLNDMWGPGLNNHPDKQKVVAALTPDADDTVLVKWRYSAFHRSPLEHALKETGRDQLIICGVYAHIGCMITATDAFMRDIQPFMVADALADFSRDEHLMALNYVAGRAGRVVMTADLLPASEPDAPGSKAALRALVLPLLDESDEPEDDENLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAWWALLSREPQA
>NC_023032.1|WP_007777102.1|1162867_1163620_+|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase-EntA
MTLDFQGKNVWVTGAGKGIGYTTALAFAGAGANVTGFDLAFSQADYPFACETLDVADAAAVAGVCERLLGNNPRLDVLVNAAGILRMGATDELAPDDWQQTFAVNVGGAFNFFQQTMAQFRAQKGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALTVGLELASSGVRANLVSPGSTDTDMQRTLWKSEDAEQQRIRGFAEQFKLGIPLGKIAQPQEVANTILFLASDLASHITLQDIVIDGGSTLGA
>NC_023032.1|WP_012124082.1|1163620_1164034_+|proofreading-thioesterase-EntH
MIWKRHMTLEALNATSVGTMVEHLGIVYTRLGDDLLEATMPVDTRTHQPFGLLHGGASAALAETLGSMAGYLTTRDGQCVVGTEISASHHRAVSQGQVRGVCQPLHLGRQSQCWEIVIYDEQGRRCCTSRLSTAILG

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Crispr_ID: NC_023032_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023032_10

1556948-1557035

Orphan

Consensus_repeat	Method
GTAGGGCGGGTAAGCGCAGCGCACCCGCCA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NC_023032_10

>merge|NC_023032|10|1556948-1557035|CRISPRCasFinder
GTAGGGCGGGTAAGCGCAGCGCACCCGCCATTGTTAAAACCAATACCATTTCCCGAAGGTAGGGCGGGTAAGTGCAGCGCACCCGCCA

>NC_023032|10|10|1556948-1557035|CRISPRCasFinder
GTAGGGCGGGTAAGCGCAGCGCACCCGCCA	TTGTTAAAACCAATACCATTTCCCGAAG
GTAGGGCGGGTAAGTGCAGCGCACCCGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_023032.1\|WP_007776232.1\|1553927_1555223_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236032
NC_023032.1\|WP_007776253.1\|1548408_1549491_-\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|234972
NC_023032.1\|WP_007776222.1\|1558568_1559720_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NC_023032.1\|WP_007776250.1\|1549487_1550792_-\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|234853
NC_023032.1\|WP_007776197.1\|1567351_1568824_+\|EmmdR/YeeO-family-multidrug/toxin-efflux-MATE-transporter	unknown	unknown	gnl\|CDD\|182293
NC_023032.1\|WP_007776255.1\|1547344_1548412_-\|bifunctional-histidinol-phosphatase/imidazoleglycerol-phosphate-dehydratase-HisB	unknown	unknown	gnl\|CDD\|235471
NC_023032.1\|WP_004385327.1\|1563118_1563457_+\|DUF496-family-protein	unknown	unknown	gnl\|CDD\|180070
NC_023032.1\|WP_007776227.1\|1555411_1556773_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NC_023032.1\|WP_007776235.1\|1552881_1553661_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|183101
NC_023032.1\|WP_162139246.1\|1566014_1566161_-\|hypothetical-protein	unknown	unknown	unknown
NC_023032.1\|WP_023898453.1\|1557063_1558491_-\|exodeoxyribonuclease-I	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236979
NC_023032.1\|WP_097566144.1\|1555359_1555422_+\|membrane-protein-YoeI	unknown	unknown	unknown
NC_023032.1\|WP_139155622.1\|1559957_1561130_+\|serine-type-D-Ala-D-Ala-carboxypeptidase-DacD	unknown	unknown	gnl\|CDD\|183117
NC_023032.1\|WP_041461109.1\|1566175_1566709_-\|DUF3304-domain-containing-protein	unknown	unknown	unknown
NC_023032.1\|WP_007776238.1\|1552073_1552898_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187576
NC_023032.1\|WP_007776214.1\|1561891_1562950_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|224208
NC_023032.1\|WP_071601073.1\|1551842_1551893_-\|his-operon-leader-peptide	unknown	unknown	unknown
NC_023032.1\|WP_023898457.1\|1565446_1565956_-\|DUF3304-domain-containing-protein	unknown	unknown	gnl\|CDD\|371700
NC_023032.1\|WP_007776216.1\|1561217_1561691_+\|DNA-gyrase-inhibitor-SbmC	unknown	unknown	gnl\|CDD\|182195
NC_023032.1\|WP_004385872.1\|1550797_1551697_-\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234781

Protein	Function_ID	Function_description	E-value
NC_023032.1\|WP_007776232.1\|1553927_1555223_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236032	PRK07495, PRK07495, 4-aminobutyrate--2-oxoglutarate transaminase.	0
NC_023032.1\|WP_139155622.1\|1559957_1561130_+\|serine-type-D-Ala-D-Ala-carboxypeptidase-DacD	gnl\|CDD\|183117	PRK11397, dacD, serine-type D-Ala-D-Ala carboxypeptidase DacD.	0
NC_023032.1\|WP_007776222.1\|1558568_1559720_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	3.57088e-27
NC_023032.1\|WP_007776250.1\|1549487_1550792_-\|histidinol-dehydrogenase	gnl\|CDD\|234853	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed.	0
NC_023032.1\|WP_007776253.1\|1548408_1549491_-\|histidinol-phosphate-transaminase	gnl\|CDD\|234972	PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional.	0
NC_023032.1\|WP_007776255.1\|1547344_1548412_-\|bifunctional-histidinol-phosphatase/imidazoleglycerol-phosphate-dehydratase-HisB	gnl\|CDD\|235471	PRK05446, PRK05446, bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB.	0
NC_023032.1\|WP_004385327.1\|1563118_1563457_+\|DUF496-family-protein	gnl\|CDD\|180070	PRK05423, PRK05423, DUF496 family protein.	2.72201e-58
NC_023032.1\|WP_007776227.1\|1555411_1556773_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	1.68364e-43
NC_023032.1\|WP_007776235.1\|1552881_1553661_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|183101	PRK11366, puuD, gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional.	1.14936e-74
NC_023032.1\|WP_023898453.1\|1557063_1558491_-\|exodeoxyribonuclease-I	gnl\|CDD\|236979	PRK11779, sbcB, exonuclease I; Provisional.	0
NC_023032.1\|WP_007776197.1\|1567351_1568824_+\|EmmdR/YeeO-family-multidrug/toxin-efflux-MATE-transporter	gnl\|CDD\|182293	PRK10189, PRK10189, EmmdR/YeeO family multidrug/toxin efflux MATE transporter.	0
NC_023032.1\|WP_007776238.1\|1552073_1552898_+\|SDR-family-oxidoreductase	gnl\|CDD\|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.19312e-76
NC_023032.1\|WP_007776214.1\|1561891_1562950_+\|FUSC-family-protein	gnl\|CDD\|224208	COG1289, COG1289, Predicted membrane protein [Function unknown].	2.91637e-39
NC_023032.1\|WP_023898457.1\|1565446_1565956_-\|DUF3304-domain-containing-protein	gnl\|CDD\|371700	pfam11745, DUF3304, Protein of unknown function (DUF3304). This is a family of bacterial proteins of unknown function.	4.00227e-07
NC_023032.1\|WP_007776216.1\|1561217_1561691_+\|DNA-gyrase-inhibitor-SbmC	gnl\|CDD\|182195	PRK10016, PRK10016, DNA gyrase inhibitor SbmC.	4.38905e-99
NC_023032.1\|WP_004385872.1\|1550797_1551697_-\|ATP-phosphoribosyltransferase	gnl\|CDD\|234781	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed.	6.41334e-160

>NC_023032.1|WP_007776227.1|1555411_1556773_+|APC-family-permease
MSLNATPKTSRVELRKTLTLIPVVMMGLAYMQPMTLFDTFGIVSGLTDGHVPTAYAFALVAILFTALSYGKLVKRFPSAGSAYTYAQKAINPTVGFMVGWSSLLDYLFAPMINILLAKIYFEALVPEIPSWIFVVLLVAFMTVFNMRTLKGVANFNTIIVVLQVVLIAVILGMVIYGVSHGEGAGTLVSSRPFWSENAHVIPMITGATILCFSFTGFDGISNLSEETKDAGRVIPRAIFLTALIGGLIFIFATYFIQLYFPDISRFKDPDASQPEIMLYVAGKAFQVGALIFSTVTVLASGMAAHAGVARLMYVMGRDGVFPNRFFGYVHPKWRTPALNVVLVGAIALMAINFDLVMATALINFGALVAFTFVNLSVISQFWIREGRNKTLKDHFTYLLLPVCGALTVGALWLNLEESSMVLGLIWAGIGVVYLACVTRSFRNPVPQYREDIA
>NC_023032.1|WP_097566144.1|1555359_1555422_+|membrane-protein-YoeI
MGQFFAYAAMFTVKENNYVA
>NC_023032.1|WP_007776232.1|1553927_1555223_+|4-aminobutyrate--2-oxoglutarate-transaminase
MQSNQQWQERREQAVPQGVGNALPVFVARAKNAEIWDVEGRRYIDFASGIAVLNTGHNHPAVIAAVKAQLDNFTHPCFQVTPYGNYIELAERLNRLAPISEPCQTLFLSTGAEAVENAIKVARIATGRSAVIAFRGAFHGRTLLGMALTGKVQPYKKGYGPFPAGIYHAPYPAAYLGVSDTQALASLAGIFAADVAPEEVAAIIIEPVQGEGGFYAASAEFMQQLRALCDKHGIVLIVDEIQSGFCRTGKTFAIEHSGVEPDLITMAKSLAGGFPLSGLVGKKALFDKALPGGLGGTYAGSPVSIAAALAVTDLIEEEQLNARAIAQGELLMSRLRELAQEYDFIGDVRGVGAMVAMELVHERDSHRPDKELTQQLVQEAGRQGLILLTCGVRANVIRFLIPLTAEKEIVTEGLNILSSCLKVVQNTRPAK
>NC_023032.1|WP_007776235.1|1552881_1553661_-|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MTVNTPPLIGVLMCQSNQDEQLILTVENLYLAPLYHFGAVAIPLPHHLADDPLYLAAALKSLSGIFLPGSPCNIEPHHYGEEAQEASNDPGRDKLALMLVRHALNTGLPLLGSCRGVHEMVVATGGKLWRQLHNVEGLREHEVNPNGSPEAKFAPVHGLEITPGGWLDSWVAPGETVRVNTLHQQGIREVGPGVFIEARADDGLIEAISIPDHPFAFGVQWHPEWGALHDEPLSKQIFDAFVAACRVWQADHQALTPLA
>NC_023032.1|WP_007776238.1|1552073_1552898_+|SDR-family-oxidoreductase
MKKVAIVGLGWLGMPLALALNARGWQVAGSKTTADGVEAARMCGIESYQLELLPEMVCDSEDLEALFNADALVVTLPARRTGGNGDYYLQAVQQVVDSALAHQIPRIIFTSSTSVYGETEGICKETTPANPVTESGRVLRELEQWLHNLPGTSVDILRLAGLVGPGRHPGRFFAGKSAPNGGHGVNLVHLEDVIGAITLLLQSPRGGHIYNLCAPQHPTRAEFYPVMARQLGLEPPRFSESPAGSKGKLIDGNRICHELGFEYLYPNPLVMPME
>NC_023032.1|WP_071601073.1|1551842_1551893_-|his-operon-leader-peptide
MTRVQFNNHHHHHHPD
>NC_023032.1|WP_004385872.1|1550797_1551697_-|ATP-phosphoribosyltransferase
MTDNNRLRIAIQKSGRLSDDSRELLARCGIKINLHTQRLIALAENMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLTRRAQGDDPRYYTLRRLDFGGCRLSLATPVDDVWEGPESLNNKRIATSYPHLLKRYLDQKGVQFKSCLLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMPAVKQQLIDKLLTRIQGVIQARESKYIMLHAPTERLDEVIALLPGAERPTILPLAGDQQRVAMHMVSSETLFWETMEKLKALGASSILVLPIEKMME
>NC_023032.1|WP_007776250.1|1549487_1550792_-|histidinol-dehydrogenase
MTFTTIVDWNACSAQQQRELLMRPAISASESITRTVAEILDTVKARGDAALREYSAKFDKTEVAALSVTPEEIDAAAARLDDNVKQAMAVAVANIEKFHRAQQLAPVDIETLPGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATPARIAGCKRVVLCSPPPIADEILYAAKLCGVQEVFQAGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDMPAGPSEVLVIADSGATPDFVASDLLSQAEHGPDSQVILLTPDAAMAQAVADATARQLEALPRAETARQALTASRIIVARDLAQCVAISNQYGPEHLIIQTRNARDLVDDITSAGSVFLGDWSPESAGDYASGTNHVLPTYGYTATSSSLGLADFQKRMTVQELTPAGFSALAETIETLAAAEQLTAHKNAVTLRVAALKEQA
>NC_023032.1|WP_007776253.1|1548408_1549491_-|histidinol-phosphate-transaminase
MSIEELARENVRTLTPYQSARRLGGNGDVWLNANEYPQAVEFQLTAQTLNRYPECQPKLVIERYAQYAGVKPEQVLVSRGADEGIELLLRAFCEPGRDAVLYCPPTYGMYSVSAETIGVECRTVQATDGWQLDLPAIAEQLDGVKVIFVCSPNNPTGQLINPQDLRTLLEMARGKAIVVADEAYIEFCPQATLAGWLGEYPHLVVLRTLSKAFALAGLRCGFTLANEEVINLLLKVIAPYPLSTPVADIAAQALSPQGITAMRERVAQVLANRDVLVAGLRETPCVEAVFDSETNYVLARITASSAVFKSLWDQGIILRDQNRQPTLSGCLRITVGTREECQRVIDALRDQPGLAATERV
>NC_023032.1|WP_007776255.1|1547344_1548412_-|bifunctional-histidinol-phosphatase/imidazoleglycerol-phosphate-dehydratase-HisB
MSQKYLFIDRDGTLIAEPPEDFQVDRFDKLAFEPDAIPVLLQLQKAGFKLVMITNQDGLGTDSLPQADFDGPHNLMMQIFTSQGVLFEDVLICPHFPTDNCDCRKPKTKLVGRYLEPGVMDAANSYVIGDRATDVELAENMGITGLRYNRADLNWAAIGEHLTKRDRYAHVERSTRETQIDVKVWLDREGGSKINTGVGFFDHMLDQIATHGGFRMEIGVKGDLYIDDHHTVEDTGLALGEALKLALGDKRGISRFGFVLPMDECLARCALDISGRPHLEYKAEFNYQRVGDLSTEMVEHFFRSLSYTMGVTLHLKTKGKNDHHRVESLFKAFGRTLRQAIRVEGEILPSSKGVL
>NC_023032.1|WP_023898453.1|1557063_1558491_-|exodeoxyribonuclease-I
MSDSAAQPTFLFHDYETFGKSPSLDRPAQFAALRTDENFTVIGEPDVFYCKPADDYLPQPEAVLITGITPQVARARGENEADFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQNDNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHANAHDAMADVYATIAMAQLVKTRQPRMFDYLYTYRSKQKLATLIDTVQMKPLVHVSGMFGAWRGNTSWIAPIAWHPENRNAVIVVDLAGDISPLLELNADDLRERLYTPKAALGEASAVPVKLVHLNKCPVLAQANTLRPEDAERLGIDRQHCLNNLKVLRDSPQVREKLVALFADAPPFPPTDNVDAQLYDGFFSDADRAAMRIVLETPPQNLPALDITFVDKRIEKLLFNYRARNFPGTLSEQEQERWLTHRRDVFTPEFLQAYAQELEMLYNQYESDKEKTALLKALYQYAQEIVG
>NC_023032.1|WP_007776222.1|1558568_1559720_-|acyltransferase
MAQGKSWSPELEGLRGLASLWVLLGHICLLVQCRIPLLYDPGMGVDLFILLSGFLMAKNYMERRDIEPWTSGHTMRNFWLRRFFRIAPLYYFLLLLALIFGAAFGEWRDVIAQAWPSTQTESQRYADTSAGNILAHISFVFGAIPYYSFRTVLPDWSIGLEMQFYVLFPFIMLLVMRWGFFAAAFAVMVAYFAARWALPGYFEAFPMPSMILIKLPLFVAGMLIAAAVRESRRLLLLLAFLAPVLAWQMHIAVTPVRLIAQCVMIAGLGALLWQAQAGSLLHQAMRLPRWLLTRRISQFLGDVSYSVYLLHLMIVIPVIGLLVEHSAFEQHASPVRLLIAAAISLPVTYTLATVLFHRVEKPGIALGKRLITRKPVQPEQVMP
>NC_023032.1|WP_139155622.1|1559957_1561130_+|serine-type-D-Ala-D-Ala-carboxypeptidase-DacD
MLLKFRPMIAVSCIMLAGITAQANAAALSMPQPPAIMAGSYVLMDYTTGQILAANNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDVVTVGKDAWAKDNPVFEGSSLMFLKAGDRVTVRDLSRGLIVDSGNDACVALADYVAGGQPQFVAMMNDYVQKLGLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPAFYHMYSEKSLTWNGITQQNRNGLLWDKTLNVDGLKTGHTSGAGFNLIASSVDGKRRLIAVIMGADSPKGREDQARKLLHWGQQTFDTVEILQKGKKVGTERVWYGKNEQVAVGTDRDFWLTLPKAQLANVKAKYLLDRERLDAPLDANERVGEIELYNGDTIIARMPLVTLEKVKKGGVFSRFGDWLHLTL
>NC_023032.1|WP_007776216.1|1561217_1561691_+|DNA-gyrase-inhibitor-SbmC
MDYTIEHVLTRKIAGFHLVGPWEKTVPQGFEQLSLWVDNFHIQPQAWLAVYYDNPQQVAPEKLRADTVVEVPADFTLPENSVGVILTDLPGGQYAVARARVEDNDFGTPWLAFFTRLHQDVRYQMAARPCFEIYLNDGKREGYWEIDMYIPVQTSGE
>NC_023032.1|WP_007776214.1|1561891_1562950_+|FUSC-family-protein
MRADKSLSSFEIRLYQHYRIVHGVRIALAFILTFLLVRMLNVPEGTWPLITLVVVMGPISFWGNVVPRAFERIGGTILGAALGLVALQLEGWSLPLMLLWCALAMFLCGFLALGKRPYQALLIGITLSVVVGSPQGDMLVALWRGGDVIFGSLLAMLFTSLWPQRAFIHWRIQMANFVGDFAKIYHAGLSPNLVERPRLDKPLQNILGSVVKLRAYITPASKETHIQRAIFEAIQTTSRNMVCTLEMQINAWWASRESHFLMINARTLRDSQQMTENTLAAIAQALREGNPSPVMANREKLAEIAQELRALMSEGQQGALVETPIHGYVWLSMELAQQLERLSQLICRALRK
>NC_023032.1|WP_004385327.1|1563118_1563457_+|DUF496-family-protein
MENSKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEAIQGIIASMKSDYEDRVDDYIIKNAEISKERREISKKLKAMGELKVHEPKGEE
>NC_023032.1|WP_023898457.1|1565446_1565956_-|DUF3304-domain-containing-protein
MGFYRRLEKIDAAVNRGYTRWGKWIWFGLSLPVMIYAAWLVWASIWGPPTGAVTLIIHSELDRPVLGFSVNGVAGSNASAHGGGGATCCGSIEGKTAEVIWTLSTTRAQYDAGMRKETRRVVMPLPKREWGEDNLHVHFLPGDKVLLGWSKNAWSPYEKRPDNIKQPKS
>NC_023032.1|WP_162139246.1|1566014_1566161_-|hypothetical-protein
MDIESLIAAASRAQQDSEHKPGTCSRIWHIGFFFDGMGRNIEREAAAD
>NC_023032.1|WP_041461109.1|1566175_1566709_-|DUF3304-domain-containing-protein
MGFYRRLEKIDAAVNRGYARWGKWIWFGLSTPVMVYAIWLVWASIWGPPTGAVALIIHSDLDRPILEFSVNGVAGGNAFVRDKNNVYASDGGKLTCCGIIKGDTAEVIWTLSTTRTQYDSGMRKETRRVVMSLPKREWGEDNLHVHFLPGDKVLLGWSMDAWSPYEKRPDNIKQPKS
>NC_023032.1|WP_007776197.1|1567351_1568824_+|EmmdR/YeeO-family-multidrug/toxin-efflux-MATE-transporter
MSVTTTVRQAIARTPWYKKRKSYRVLLWREITPLAVPILLENTCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVVLSFFAAVDLGTTVLVAFSLGKRDRKRARAAARQSLVLMTIVSILLAALVHVTGEYIIDVVAGEATPQVKELALIYLQLTAWSYPAAAIALIGSGALRGAGNTKIPLLINGGMNILNIVISGFLIYGLFSWHGLGFVGAGLGLTISRYIGAIAILYVLMIGFNPALRISLKSYFSPLKLNILWEVLGIGLPASIESVLFNGGKLLTQMFVAGMGTNVIAGNFIAFSVAALINLPGNALGSASTIITGKRLGKGQIGQAERELRHVFWLSTIMLTAIAWVSAPFAGLFASFYTHEDDVKEVVKILLWLNAAFMPIWAASWVLPAGLKGARDARFAMWVSMLGMWGCRVVAGYMLGIVLGMGVVGVWLGMFLDWAVRGVFFYWRMVSGKWLQKYPRPPKRPVVLDTPAPPGQPKAM

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Crispr_ID: NC_023032_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023032_11

2071040-2071122

Orphan

Consensus_repeat	Method
GGGTGCGCTGCGCTTACCCGCCCTACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_023032_11

>merge|NC_023032|11|2071040-2071122|CRISPRCasFinder
GGGTGCGCTGCGCTTACCCGCCCTACGGAGAAAGAGGCAGATGCGGGTTTAATGGTGGGTGCGCTGCGCTTACCCACCCTACG

>NC_023032|11|11|2071040-2071122|CRISPRCasFinder
GGGTGCGCTGCGCTTACCCGCCCTACG	GAGAAAGAGGCAGATGCGGGTTTAATGGT
GGGTGCGCTGCGCTTACCCACCCTACG

Protein	Signature genes	Signature genes Name	Protein_function
NC_023032.1\|WP_023898720.1\|2062199_2062607_-\|ASCH-domain-containing-protein	unknown	unknown	gnl\|CDD\|119345
NC_023032.1\|WP_007775266.1\|2075310_2075919_-\|Tat-proofreading-chaperone-DmsD	unknown	unknown	gnl\|CDD\|236938
NC_023032.1\|WP_023898725.1\|2067973_2068906_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176106
NC_023032.1\|WP_007775296.1\|2066601_2067852_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
NC_023032.1\|WP_023898729.1\|2075964_2076813_-\|dimethyl-sulfoxide-reductase-anchor-subunit-family-protein	unknown	unknown	gnl\|CDD\|225839
NC_023032.1\|WP_007775291.1\|2069000_2070218_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NC_023032.1\|WP_007775263.1\|2077441_2079877_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|184952
NC_023032.1\|WP_023898723.1\|2065043_2066528_-\|carboxypeptidase-M32	unknown	unknown	gnl\|CDD\|341054
NC_023032.1\|WP_007775269.1\|2073936_2074650_-\|osmoprotectant-ABC-transporter-permease-OsmY	unknown	unknown	gnl\|CDD\|224095
NC_023032.1\|WP_032983491.1\|2072357_2073005_-\|osmoprotectant-ABC-transporter-permease-OsmW	unknown	unknown	gnl\|CDD\|224095
NC_023032.1\|WP_023898727.1\|2071212_2072358_-\|osmoprotectant-ABC-transporter-ATP-binding-protein-OsmV	unknown	unknown	gnl\|CDD\|224050
NC_023032.1\|WP_007775321.1\|2063459_2063789_+\|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtI	unknown	unknown	gnl\|CDD\|182618
NC_023032.1\|WP_023898719.1\|2060803_2062072_+\|translesion-error-prone-DNA-polymerase-V-subunit-UmuC	unknown	unknown	gnl\|CDD\|179607
NC_023032.1\|WP_007697231.1\|2073014_2073920_-\|osmoprotectant-ABC-transporter-substrate-binding-protein-OsmX	unknown	unknown	gnl\|CDD\|270329
NC_023032.1\|WP_007775309.1\|2063830_2064652_-\|serine-protease	unknown	unknown	gnl\|CDD\|226119
NC_023032.1\|WP_007775264.1\|2076814_2077432_-\|dimethylsulfoxide-reductase-subunit-B	unknown	unknown	gnl\|CDD\|131996
NC_023032.1\|WP_032982087.1\|2070333_2071026_+\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|237083
NC_023032.1\|WP_007775324.1\|2063113_2063473_+\|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtJ	unknown	unknown	gnl\|CDD\|182471
NC_023032.1\|WP_007793612.1\|2080168_2080465_-\|DUF1161-domain-containing-protein	unknown	unknown	gnl\|CDD\|369019
NC_023032.1\|WP_004387237.1\|2074978_2075314_+\|GlpM-family-protein	unknown	unknown	gnl\|CDD\|284382

Protein	Function_ID	Function_description	E-value
NC_023032.1\|WP_023898720.1\|2062199_2062607_-\|ASCH-domain-containing-protein	gnl\|CDD\|119345	cd06553, ASCH_Ef3133_like, ASC-1 homology domain, subfamily similar to Enterococcus faecalis Ef3133. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.	7.10935e-55
NC_023032.1\|WP_007775266.1\|2075310_2075919_-\|Tat-proofreading-chaperone-DmsD	gnl\|CDD\|236938	PRK11621, PRK11621, Tat proofreading chaperone DmsD.	1.61625e-114
NC_023032.1\|WP_023898725.1\|2067973_2068906_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	8.01357e-68
NC_023032.1\|WP_007775296.1\|2066601_2067852_-\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.35619e-79
NC_023032.1\|WP_023898729.1\|2075964_2076813_-\|dimethyl-sulfoxide-reductase-anchor-subunit-family-protein	gnl\|CDD\|225839	COG3302, DmsC, DMSO reductase anchor subunit [General function prediction only].	9.75903e-92
NC_023032.1\|WP_007775291.1\|2069000_2070218_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	5.82938e-66
NC_023032.1\|WP_007775263.1\|2077441_2079877_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|184952	PRK14990, PRK14990, anaerobic dimethyl sulfoxide reductase subunit A; Provisional.	0
NC_023032.1\|WP_023898723.1\|2065043_2066528_-\|carboxypeptidase-M32	gnl\|CDD\|341054	cd06460, M32_Taq, Peptidase family M32, which includes thermostable carboxypeptidases TaqCP, PfuCP and FisCP. Peptidase family M32 is a subclass of metallocarboxypeptidases, distributed mainly in bacteria and archaea, whose members contain a HEXXH motif that participates in coordinating a divalent cation such as Zn2+ or Co2+. It includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). The keratin-degrading extremophilic eubacterium Fervidobacterium islandicum M32 carboxypeptidase (FisCP) plays an important role in cellular metabolism, and significantly enhances the degradation of native chicken feathers. It has been shown to mainly cleave the C-termini of peptides with a basic amino acid sequence. Novel M32 peptidases from some eukaryotes: protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, have been identified, thus making these enzymes an attractive potential target for drug development against these organisms.	0
NC_023032.1\|WP_007775269.1\|2073936_2074650_-\|osmoprotectant-ABC-transporter-permease-OsmY	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	3.05124e-69
NC_023032.1\|WP_032983491.1\|2072357_2073005_-\|osmoprotectant-ABC-transporter-permease-OsmW	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	4.01799e-73
NC_023032.1\|WP_023898727.1\|2071212_2072358_-\|osmoprotectant-ABC-transporter-ATP-binding-protein-OsmV	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	9.79971e-159
NC_023032.1\|WP_007775321.1\|2063459_2063789_+\|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtI	gnl\|CDD\|182618	PRK10650, PRK10650, multidrug/spermidine efflux SMR transporter subunit MdtI.	1.38655e-51
NC_023032.1\|WP_023898719.1\|2060803_2062072_+\|translesion-error-prone-DNA-polymerase-V-subunit-UmuC	gnl\|CDD\|179607	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC.	0
NC_023032.1\|WP_007697231.1\|2073014_2073920_-\|osmoprotectant-ABC-transporter-substrate-binding-protein-OsmX	gnl\|CDD\|270329	cd13611, PBP2_YehZ, Substrate-binding domain YehZ of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein YehZ of Clostridium sticklandii is predicted to be involved in uptake of compatible solutes such as choline, L-proline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. YehZ belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.6193e-139
NC_023032.1\|WP_007775309.1\|2063830_2064652_-\|serine-protease	gnl\|CDD\|226119	COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism].	4.15551e-76
NC_023032.1\|WP_007775264.1\|2076814_2077432_-\|dimethylsulfoxide-reductase-subunit-B	gnl\|CDD\|131996	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.	3.85942e-93
NC_023032.1\|WP_032982087.1\|2070333_2071026_+\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|237083	PRK12374, PRK12374, ATP-dependent dethiobiotin synthetase BioD.	6.19653e-158
NC_023032.1\|WP_007775324.1\|2063113_2063473_+\|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtJ	gnl\|CDD\|182471	PRK10452, PRK10452, multidrug/spermidine efflux SMR transporter subunit MdtJ.	2.05157e-47
NC_023032.1\|WP_007793612.1\|2080168_2080465_-\|DUF1161-domain-containing-protein	gnl\|CDD\|369019	pfam06649, DUF1161, Protein of unknown function (DUF1161). This family consists of several short, hypothetical bacterial proteins of unknown function.	2.29163e-26
NC_023032.1\|WP_004387237.1\|2074978_2075314_+\|GlpM-family-protein	gnl\|CDD\|284382	pfam06942, GlpM, GlpM protein. This family consists of several bacterial GlpM membrane proteins. GlpM is a hydrophobic protein containing 109 amino acids. It is thought that GlpM may play a role in alginate biosynthesis in Pseudomonas aeruginosa.	1.50628e-50

>NC_023032.1|WP_032982087.1|2070333_2071026_+|ATP-dependent-dethiobiotin-synthetase-BioD
MLKRVFITGTDTAVGKTVVSRALLQALAATGKRVVGYKPVAKGSKMMPEGLRNKDALVLQSVSSLTLPYEAINPIAFSEEESSVAHSCAINYSLLSNGLAQLCEQADHVVVEGTGGWRSLMNDLRPLSDWVVQEQLPVLMVVGIQEGCLNHALLTAQAIASDGLPLVGWVANRINPGLAHYAEIIEVLSQKLPAPLIGELPYLPRAEQRDLAKWVDVTRLGATDPLRAAV
>NC_023032.1|WP_007775291.1|2069000_2070218_+|ROK-family-transcriptional-regulator
MVADSQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQETEIQEPGSRGRPAVGLAVETDAWHYLSVRINRGEINLALRDLSSKLVVEEQLDLPLQDARPLLDRIIDHIDRFFIRHQRQLERLTAIAITLPGVIDTEHGLVRQMPFYDVVDMPLGAALEAHTGVPVFVQHDISAWTMAEGLFGASRGARDVIQVVIDHNVGAGVITDGRLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASIDSVLELAQQRMNQSMGSMLHGQPLSVESLCDAALAGDLLARDIILGVGVNVGRILAIMVNLFNPQKILIGSPLNRASDILFPAIADAVRQQSLPAYSRNISVESTQFSNRGTMAGAALVKDAMYNGSLLIRLLQG
>NC_023032.1|WP_023898725.1|2067973_2068906_+|LysR-family-transcriptional-regulator
MNIELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQALEAQTGARLLARTNRSVTLTAAGRQFLADSRQILSEVEAAAVRAARLHNGETGELRIGFTSSAPFIRAISDTLSVFRRRYPDVHLQTLEINTRSQIAPLTEGRLDVGLMRNTPLPETLAWQLVLREPLLALIPCDHPLAVREAVSLSELAGEPFVFFDPHVGTGLYDDILGLLHRYGVQPRITQEVGEAMTIIGLVAAGLGVSILPASFQRVRLEEMRWVKLREPDAISEMWLVWARHREQSAAAQRFISLLNGAAQWPEMAADLHKNVR
>NC_023032.1|WP_007775296.1|2066601_2067852_-|MFS-transporter
MSRTTTVSAPPAQAADDAVTAAPATYIKRGTPAFMRVTLALFSAGLATFALLYCVQPILPVLSQEFGVTPAASSISLSVATGMLAVGLLFTGPLSDAIGRKNVMVTALLLASICTLLATMMHSWHGILLMRALIGLSLSGVAAVGMTYLSEEIHPSMVAFSMGLYISGNSIGGMSGRLLTGVITDFFSWRVAMACIGCFALAAALMFWKILPASRHFRASSLRPRTLLINFRLHWRDDGLPLLFAEGFLLMGAFVTLFNYIGYRLMLSPWHLSQAAVGLLSVAYLTGTWSSPKAGAMTARFGRGPVMLGFTAVMLCGLLLTLFSSLWLIFAGMLLFSAGFFAAHSVASSWIGPRARRAKGQASSLYLFSYYLGSSFAGTLGGLFWHRYGWNGVGGFIALLLVLALLVGGGLHRRVR
>NC_023032.1|WP_023898723.1|2065043_2066528_-|carboxypeptidase-M32
MENKNYQQLSRTFLRLSRFSHLSAIASWDMFAMMPPGGSRARGEALAELSVLQHQILTDKKMAEWLRGAEQEDLNDLEQANLREMQRHYQQAALLPEALVEAKSLAGSRCEHAWRSQRPANDWDGFSENLKEVVKLSREEAAIRAEANGCSRYDALLDIFEPDMTSARLDTLFGDLRSWLPDLLARAVEKQERTVLITPQGPFPVAQQRELGLEAMRLLGFDFDGGRLDVSAHPFCGGVPEDVRITTRYDENELFSALFGVIHETGHARYEQNLPREWPGQPVSLARSTAIHESQSLFFEMQLGRSRPFLKLLLPQVVSRFGKQPAFEEENYLAWNQRVKPGFIRVDADEVSYPAHVVLRYEIERALIDGDIEVDDIPALWDEKMQQWLGIFTTGNYRDGCMQDIHWTDGGFGYFPSYTLGAMYAAQLFQAARQALPNLDASIAAGDLRALFDWLRQSVWQHGSRFTTSQLMINATGDDLNPRYFREHLTARYL
>NC_023032.1|WP_007775309.1|2063830_2064652_-|serine-protease
MRKTVFLLLGSLLLPVFITHADEGDDASETASDVQTLFFNHDDRTPVPDPAASPWDAIGQLETESGNLCTATLISPHLALTAGHCLLSPPDGTPDRPVALRFVSQKGKWRYEIHSIEGRVSPSLGHKLKADGEGWIVPSSAAPEDFGLIILRNPPSGLTPLPLFEGDRAALNRALKATGRHVTQSGYPEDHLDALYSHQDCLITGWAQRNVLAHQCDTLPGDSGSPLMLRTDAGWQLIGVQSSAPAAKDRWRADNRAISVTGFRERLEALASE
>NC_023032.1|WP_007775321.1|2063459_2063789_+|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtI
MSQVELQHILWLLLAIGLEIIANIWLKFSDGFRRPVYGVASLAAVLAAFSALGQAVEGIDLAVAYALWGGFGIAATVAAGWIMFGQRLNRKGWAGLGLLLVGMVIIKLA
>NC_023032.1|WP_007775324.1|2063113_2063473_+|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtJ
MIYWILLALAIVSEITGTLALKWASVGGGHAGFILMLVMISLSYIFLSFSVKRIALGVAYALWEGVGIVLITLFSVLLFNETLTVQKALGLLVLIAGILLIKTGTRTVSRKAEVRHVAG
>NC_023032.1|WP_023898720.1|2062199_2062607_-|ASCH-domain-containing-protein
MTVDELQQKYPGAPAWGFGDSPHMADELGALVAYGTKRASCSDYHAWRQDGEPVLPGDYHIILNGAGEPLCVIRTHTLRLVKFCDVTEQLAALEGEGDLSLAYWRKEHEAFFTRAGCFSPDMPLMFEEFDLVERC
>NC_023032.1|WP_023898719.1|2060803_2062072_+|translesion-error-prone-DNA-polymerase-V-subunit-UmuC
MYALVDVNSFYASCEMVFRPDLRDKPVVVLSNNDGCVIARSRQAKALGITMAEPYFKQRALFERHRVAVFSSNYAFYADMSKRVMDILEEMAPQVEIYSIDEAFVDLRGVSNVMSLTTFTHEIRDRLWRETHLPVGVGIAPTKTLAKLANLATKKWPKSGGVVDLSDPARLRRALAHFNVDEVWGVGRRLSKKLAAMGIETAFDLANSPAWVIRKNFNVVLERTVRELRGEPCLAMDEFVAPKQQIVCSRSFGYRVTAYQDMRQAVCAWAERAAEKLRQEHQFCRQVAVFIRTSPHDEPDNRYSNQALCQALTPTNDTREIVRLAVSALDAIWREGYRYIKAGVMLGDFFSQGVAQLNLFDEHPPQANSAPLMHLLDEYNRSGRGKLWFAGQGIVKPWAMKREFLSPGYTTRFSELPRASLW
>NC_023032.1|WP_023898727.1|2071212_2072358_-|osmoprotectant-ABC-transporter-ATP-binding-protein-OsmV
MIKLENLTKQFVQKNGQTFNAVDNVNLNVPEGEMCVLLGPSGCGKTTTLKMINRLIAPSGGKIFINREDTTDLDTVTLRRNIGYVIQQIGLFPNMTIEENITVVPRMLGWDKARCKERATELMAMVALDPKRFLSRYPKEMSGGQQQRIGVIRALAADPPVLLMDEPFGAVDPINREVIQNQFLEMQRQLKKTVMLVSHDIDEALKLGDRIAVFRQGKIIQCASPDELLAKPANEFVGSFVGQDRTLKRLLLIQAGDVTDKQPTITVRSSTPLAEAFALMDDNDMRSVTVVDENEKPLGFVKRREARGATGVCADITHPFRVTGKAEDNLRVVLSRLYEHNTVWMPIVDEDGRYSGEISQDYIADYLSSGRTRRALNIHEG
>NC_023032.1|WP_032983491.1|2072357_2073005_-|osmoprotectant-ABC-transporter-permease-OsmW
MDTIHYMIDNAGFLASLTIQHLWLVLLAVGFAIVIGVPLGILIVRHKWLATPVLGLATLVLTIPSIALFGLMIPLFSLIGQGIGALPAITAVFLYSLLPIVRNTHTALDSLPPGLREAGRGIGMTFWQRLRWVEIPMALPVIFGGIRTAVVMNIGVMAIAAVIGAGGLGLLLLNGIGGSDIRMLIAGALMICLLAIILDWLLHRLQVVLTPKGIR
>NC_023032.1|WP_007697231.1|2073014_2073920_-|osmoprotectant-ABC-transporter-substrate-binding-protein-OsmX
MTLLNRWLTIAAAGLLLATTAARAAPLVLTTKSFTEQHILSAMTVLYLQKKGFQVEPRTNIATVISRNAMINKQVDMTWEYTGTSLIIFNHINKRMTPEETYNTVKKLDAKLGLVWLKPASMNNTYAFAMQRKRAEEEHISTMSQLAEKIEQVRKTDPDNNWMLALDLEFYGRSDGMKPLQQAYNMPLDRPQIRQMDPGLVYNAIRDGFVDAGLVYATDGRVKGFDLKVLEDDKGFFPSYAVTPVVRKDTLAANPGLEEALNTISGLMDNETITTLNAKVDIDHQTPQQVARDFLRDKGLL
>NC_023032.1|WP_007775269.1|2073936_2074650_-|osmoprotectant-ABC-transporter-permease-OsmY
MQKASLTLRAIGALAGLAVVIGLLVWGIGPDTLAARREDLLYLGKQHLILVFSSMALALAVGIPSGILLSRPAARRFAEYAMQIFNVGNTLPPLAVLALAMVVVGIGDKPAIVALFLASLLPIVRNTYAGLCSVPGSLIEAANGIGMTKGQRLWQVELPNAWPVMLSGIRIATAINVGTAPLAFLIGASSFGELIFPGIYLNDFPTLILGAAATALFALILDMALAALGRVLSPHTA
>NC_023032.1|WP_004387237.1|2074978_2075314_+|GlpM-family-protein
MGLLIKALLGAAVVVLIGMLSKTKNYYIAGLIPLFPTFALIAHYIVVTGRGVEALRTTVIFGMWAIIPYFVYLASLWVLSGMVKVPLALGGAVACWCLSAWLLIALWSRFH
>NC_023032.1|WP_007775266.1|2075310_2075919_-|Tat-proofreading-chaperone-DmsD
MKQELTDIACCARILGALFYYSPDASEARAIIDALRTPGWEREWPCALDTTRMAGFVTLNSGDETLAQAWQRLFIGPHALPAPPWGSVWLDRESVLFGDSTLALQSWLRDNAIAFETPLNEPADHIGLLLLLAAWLAEQGKTRELDELLAWHLLPFAPRFLEVFCAQAQHPFYEALGELTRATFAHWRSGLLMPVAQKPLYR
>NC_023032.1|WP_023898729.1|2075964_2076813_-|dimethyl-sulfoxide-reductase-anchor-subunit-family-protein
MGSGWHEWPLVLFTVLGQCVAGGLIITGLVWLTGTENERPRIVRAMFFLWVLMGIAFIASVMHLGSPLRAFNSLNRLGHSPLSNEIASGSLFFAVGGLWWLVAVLGKMPDTLGKIWLIVAMALGVLFIFAMTRVYQINTVPTWHNGYTTLGFFLTAFLGGPLLGALLLAVAGVTGPRAFAIVSVFALVISAAAALMQSAGLAGIHSSVQQASALLPDYGFWQAWRMALLAPGIGCWLCPLARRVPPRPWGLAAGFALVLVAELIGRGLFYGLHMTVGMAVAG
>NC_023032.1|WP_007775264.1|2076814_2077432_-|dimethylsulfoxide-reductase-subunit-B
MTTQYGFYIDSSRCTGCKTCELACKDYKDLTPDVSFRRIYEYAGGDWQEDNGVWQQNVFAYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVNEDVCIGCRYCHMACPYGAPQYNAAKGHMTKCDGCYERIAEGKKPICVESCPLRALDMAPIDELRKKYGALAQVAPLPAAHFTRSNIVIKPNANSRPTGDTTGKLANPKEV
>NC_023032.1|WP_007775263.1|2077441_2079877_-|molybdopterin-dependent-oxidoreductase
MSNTDNPVGISRRTLVKSTALGGLALAAGGISLPFGVRQVAAAVEHAISPPDERVVWSACTVNCGSRCPLRMHVVNGEIRYVETDNTGGDDYDGLHQVRACLRGRSMRRRVYNPDRLKYPMKRVGKRGEGKFVRISWDEALDTIARGMKRIISDYGNEAIYLNYGTGTLGGTMTRSWPPGKTLLARLMNCCGGYLNHYGDYSSAQIAAGLSYTYGGWADGNSPSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARAKSQARMIVIDPRYTDTAAGREDEWIPIRPGTDAALAAAIAWVLIAENYVDQPFLDNYCVGYDEKTLPPGAPANGHYKAYILGDGPDGTAKTPAWAAPITGIPEARIIKLAREIGEAKPAFIAQGWGPQRHSNGELACRAIAMLPILTGNVGIHGGNSGAREGSFSLPFERMPTLQNPVETSISMFTWTDAIERGPSMTATADGVRGKEKLDVPIKMIWNYAGNCLINQHSQINRTHEILQDDKKCELIVVIDCHMTASARYADILLPDCTASEQMDFALDASCGNMAYVIFADQAIAPRFECRTIYDITSALAARMGVGEQFTEGRTQEGWLRHLYAQSQRAIPELPDFDTFRKQGIFKLRDPQGHHVAYQAFRENPAANPLDTPSGKIEIYSSALADIAANWQLPEGDVIHPLPVYSPGFEQVSDPLRAQYPLQLTGFHYKSRTHSTYGNVDVLQAACRQQIWINPQDAQTRGINDGDLVRVWNARGEARIEAKVTPRIMPGVVALGEGAWYQPDAEGVDHAGSINVLTTQRPSPLAKGNPSHSNLVQLARV
>NC_023032.1|WP_007793612.1|2080168_2080465_-|DUF1161-domain-containing-protein
MKKRYWAGALLLAATLPVSAAQNSCERVKADIEQRIINNGVPENGFTLTIVPNDQADQPDAQVVGHCANDTQKILYTRTQSGNATGGGTSQGAASEPQ

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Crispr_ID: NC_023032_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023032_12

2861862-2862004

Orphan

Consensus_repeat	Method
TTACCCGCCCTACATTGCTGTCCTCAGCGCTTTTGTAGGGTGGGTAAGCGCAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_023032_12

>merge|NC_023032|12|2861862-2862004|CRISPRCasFinder
TTACCCGCCCTACATTGCTGTCCTCAGCGCTTTTGTAGGGTGGGTAAGCGCAAGGGCACCCACCTTCACCGCCCGGCGGGTGCCCAAGTTTACCCGCCCTACATTGCTGTCCTCAGTGCTTTTGTAGGGTGGGTAAGCGCAAG

>NC_023032|12|12|2861862-2862004|CRISPRCasFinder
TTACCCGCCCTACATTGCTGTCCTCAGCGCTTTTGTAGGGTGGGTAAGCGCAAG	GGCACCCACCTTCACCGCCCGGCGGGTGCCCAAGT
TTACCCGCCCTACATTGCTGTCCTCAGTGCTTTTGTAGGGTGGGTAAGCGCAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_023032.1\|WP_007782285.1\|2854534_2854669_+\|manganase-accumulation-protein-MntS	unknown	unknown	gnl\|CDD\|380222
NC_023032.1\|WP_032983482.1\|2857486_2858374_+\|threonine/homoserine-exporter-RhtA	unknown	unknown	gnl\|CDD\|182525
NC_023032.1\|WP_004388458.1\|2861052_2861775_+\|glutamine-ABC-transporter-ATP-binding-protein-GlnQ	unknown	unknown	gnl\|CDD\|181906
NC_023032.1\|WP_023899100.1\|2864478_2865408_-\|23S-rRNA-(adenine(1618)-N(6))-methyltransferase-RlmF	unknown	unknown	gnl\|CDD\|236964
NC_023032.1\|WP_007782268.1\|2859569_2860313_+\|glutamine-ABC-transporter-substrate-binding-protein-GlnH	unknown	unknown	gnl\|CDD\|236540
NC_023032.1\|WP_007782256.1\|2867105_2868074_-\|DNA-binding-protein-YbiB	unknown	unknown	gnl\|CDD\|236160
NC_023032.1\|WP_004388457.1\|2860396_2861056_+\|glutamine-ABC-transporter-permease-GlnP	unknown	unknown	gnl\|CDD\|181907
NC_023032.1\|WP_007792040.1\|2866755_2867016_+\|DUF1471-domain-containing-protein	unknown	unknown	gnl\|CDD\|137782
NC_023032.1\|WP_023899096.1\|2854961_2856545_+\|phosphoethanolamine-transferase	unknown	unknown	gnl\|CDD\|225105
NC_023032.1\|WP_004385894.1\|2866228_2866495_+\|DksA/TraR-family-C4-type-zinc-finger-protein	unknown	unknown	gnl\|CDD\|182903
NC_023032.1\|WP_032983481.1\|2862219_2864478_+\|mechanosensitive-channel-protein	unknown	unknown	gnl\|CDD\|183147
NC_023032.1\|WP_007782250.1\|2869005_2869677_+\|molecular-chaperone	unknown	unknown	gnl\|CDD\|225663
NC_023032.1\|WP_032983196.1\|2872294_2873275_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NC_023032.1\|WP_007768605.1\|2858689_2859193_+\|DNA-starvation/stationary-phase-protection-protein-Dps	unknown	unknown	gnl\|CDD\|236521
NC_023032.1\|WP_007782248.1\|2869718_2872271_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NC_023032.1\|WP_007782277.1\|2856624_2857137_-\|outer-membrane-protein-OmpX	unknown	unknown	gnl\|CDD\|181828
NC_023032.1\|WP_007792034.1\|2868402_2868939_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185189
NC_023032.1\|WP_007782261.1\|2865519_2866137_+\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|224766
NC_023032.1\|WP_155242694.1\|2859328_2859505_-\|hypothetical-protein	unknown	unknown	unknown
NC_023032.1\|WP_007707103.1\|2853883_2854351_-\|manganese-binding-transcriptional-regulator-MntR	unknown	unknown	gnl\|CDD\|182927

Protein	Function_ID	Function_description	E-value
NC_023032.1\|WP_007782285.1\|2854534_2854669_+\|manganase-accumulation-protein-MntS	gnl\|CDD\|380222	NF033226, small_MntS, manganase accumulation protein MntS. Members of this family are MntS, a small protein of about 42 amino acids that seems to play assist bacteria in accumulating manganese when iron is limiting. It may function as a manganese chaperone, or may inhibit manganese efflux transporters.	1.31435e-18
NC_023032.1\|WP_032983482.1\|2857486_2858374_+\|threonine/homoserine-exporter-RhtA	gnl\|CDD\|182525	PRK10532, PRK10532, threonine and homoserine efflux system; Provisional.	2.82143e-179
NC_023032.1\|WP_004388458.1\|2861052_2861775_+\|glutamine-ABC-transporter-ATP-binding-protein-GlnQ	gnl\|CDD\|181906	PRK09493, glnQ, glutamine ABC transporter ATP-binding protein GlnQ.	0
NC_023032.1\|WP_023899100.1\|2864478_2865408_-\|23S-rRNA-(adenine(1618)-N(6))-methyltransferase-RlmF	gnl\|CDD\|236964	PRK11727, PRK11727, 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF.	0
NC_023032.1\|WP_007782268.1\|2859569_2860313_+\|glutamine-ABC-transporter-substrate-binding-protein-GlnH	gnl\|CDD\|236540	PRK09495, glnH, glutamine ABC transporter periplasmic protein; Reviewed.	7.66912e-171
NC_023032.1\|WP_007782256.1\|2867105_2868074_-\|DNA-binding-protein-YbiB	gnl\|CDD\|236160	PRK08136, PRK08136, glycosyl transferase family protein; Provisional.	0
NC_023032.1\|WP_004388457.1\|2860396_2861056_+\|glutamine-ABC-transporter-permease-GlnP	gnl\|CDD\|181907	PRK09494, glnP, glutamine ABC transporter permease protein; Reviewed.	5.05435e-141
NC_023032.1\|WP_007792040.1\|2866755_2867016_+\|DUF1471-domain-containing-protein	gnl\|CDD\|137782	PRK10259, PRK10259, hypothetical protein; Provisional.	1.31941e-16
NC_023032.1\|WP_023899096.1\|2854961_2856545_+\|phosphoethanolamine-transferase	gnl\|CDD\|225105	COG2194, COG2194, Predicted membrane-associated, metal-dependent hydrolase [General function prediction only].	2.01969e-118
NC_023032.1\|WP_004385894.1\|2866228_2866495_+\|DksA/TraR-family-C4-type-zinc-finger-protein	gnl\|CDD\|182903	PRK11019, PRK11019, DksA/TraR family C4-type zinc finger protein.	4.79126e-58
NC_023032.1\|WP_032983481.1\|2862219_2864478_+\|mechanosensitive-channel-protein	gnl\|CDD\|183147	PRK11465, PRK11465, putative mechanosensitive channel protein; Provisional.	0
NC_023032.1\|WP_007782250.1\|2869005_2869677_+\|molecular-chaperone	gnl\|CDD\|225663	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion].	4.23477e-79
NC_023032.1\|WP_032983196.1\|2872294_2873275_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	7.02947e-13
NC_023032.1\|WP_007768605.1\|2858689_2859193_+\|DNA-starvation/stationary-phase-protection-protein-Dps	gnl\|CDD\|236521	PRK09448, PRK09448, DNA starvation/stationary phase protection protein Dps; Provisional.	5.03014e-109
NC_023032.1\|WP_007782248.1\|2869718_2872271_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NC_023032.1\|WP_007782277.1\|2856624_2857137_-\|outer-membrane-protein-OmpX	gnl\|CDD\|181828	PRK09408, ompX, outer membrane protein OmpX.	3.78465e-110
NC_023032.1\|WP_007792034.1\|2868402_2868939_+\|fimbrial-protein	gnl\|CDD\|185189	PRK15289, lpfA, fimbrial protein; Provisional.	4.07208e-27
NC_023032.1\|WP_007782261.1\|2865519_2866137_+\|flavin-reductase-family-protein	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	1.1877e-42
NC_023032.1\|WP_007707103.1\|2853883_2854351_-\|manganese-binding-transcriptional-regulator-MntR	gnl\|CDD\|182927	PRK11050, PRK11050, manganese-binding transcriptional regulator MntR.	1.65058e-90

>NC_023032.1|WP_004388458.1|2861052_2861775_+|glutamine-ABC-transporter-ATP-binding-protein-GlnQ
MIEFKNVSKHFGQTQVLHNIDLKINQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPIRVRGASKAEAEKLAKELLAKVGLAERGHHYPSELSGGQQQRVAIARALAVKPKMMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGNPQALIENPPSPRLQEFLQHVS
>NC_023032.1|WP_004388457.1|2860396_2861056_+|glutamine-ABC-transporter-permease-GlnP
MQFDWSAIWPAIPLLLEGAKMTLWISVLGLVGGLIIGLVAGFARSFGGWIANHIALVFIEIIRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFVLRRLERRMKIL
>NC_023032.1|WP_007782268.1|2859569_2860313_+|glutamine-ABC-transporter-substrate-binding-protein-GlnH
MKSVFKVSLAALTLAFAVSSQAADKLVVATDTAFVPFEFKQGDKYVGFDVDLWAAIAKELKLDYTLKPMDFSGIIPALQTKNVDLALAGITITDERKKAIDFSDGYYNSGLLVMVKANNNDVKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLAGQQYGIAFPKGSDELRTKVNGALKTLKENGTYNEIYKKWFGTEPK
>NC_023032.1|WP_155242694.1|2859328_2859505_-|hypothetical-protein
MPVLQPAVLKGKTKVRLHNLRAFTTAMHHDGAPKQCVTAASRVSSLFCLKNGDKTISG
>NC_023032.1|WP_007768605.1|2858689_2859193_+|DNA-starvation/stationary-phase-protection-protein-Dps
MGTAKLVKTKASDLLYTRNDVADSDKKATIELLNRQVVNFIDLSLITKQAHWNMRGANFIGVHEMLDGFRTALTGHMDTIAERAVQLGGVALGTTQVINSKTPLKSYPLDIHSVQDHLKELADRYAIVANDVRKAISEAQDEDTADIFTAASRDLDKFLWFIESNIE
>NC_023032.1|WP_032983482.1|2857486_2858374_+|threonine/homoserine-exporter-RhtA
MPTLSRKTPIWLPVVVLLVAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILVIVFKPWRLRFTRSQRMPLLVYGLALGAMNYLFYLSIRTVPLGIAVALEFTGPLAVALFGSRRPVDFLWVALAVLGLWFLLPLGQDVTHVDLLGAACALGAGVCWAIYIIAGQKAGAEHGPATVAIGSLIAAIVFVPIGAAAAGEALWHWSVLPVGLGIAILSTALPYSLEMTALTRLPTRTFGTLMSMEPALAAFTGMIFLGETLTLVQWLALLSIIIASVGSTLTLRRETQIKSLDID
>NC_023032.1|WP_007782277.1|2856624_2857137_-|outer-membrane-protein-OmpX
MKKIACLSALACVLAVSAGSAVAGTATVTGGYAQSDAQGVMNKMNGFNLKYRYEFDDTNPLGVIGSFTYTEKDRSEDGVYGKNQYYGITAGPAYRINDWASIYGVVGVGYDKAQATNGVDKADTSDYGFSYGAGLQFNPVQDVALDFSYEQSRVRNTDIGTWIAGVGYRF
>NC_023032.1|WP_023899096.1|2854961_2856545_+|phosphoethanolamine-transferase
MNLTLKNTLAARGIALDPWIGFYFLQSLLINFTLGYEFSLLYAVAFCCVLLLLWKTAPRAQKALLAVCSVVAGLYFPFGQTYGAPNFNTLLALHATNMEESTELLTIFPWYSYLVSLFIFTLGIIAVRRTSSAPSRWQPFDSLCLAISVVSFFVTPVQNQLYGGVFALKDSGYPVFRFVKDVVVNNHEVLEEQQRMEALSKIKDSWNVLAVAPKYHTYVVVIGESVRRDAVGAFGGQWDNSPFASHVNGYLFTDYIAASGSTQKSLGLTLNRVVDNKPQYQDNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIAKRADEVHFLKSGDFEADKNTRDEALLKMTAQVLATQRPQPQLIVLHLMGSHPQACDRTQGKYETFVQSKETSCYLYSIRQTDDLLSQLYQQLQNSGQSFSMVYFSDHGLAVKERGKAVQYLAHDDKFQQNFQVPFMVLSSDDKAHRIIKARRSANDFLSFFSQWTGIKVKEIAPKYKFISGQKAGPVFVTNFKLNKVSYDHLGTDLLDARTR
>NC_023032.1|WP_007782285.1|2854534_2854669_+|manganase-accumulation-protein-MntS
MNELMRCLNVFTHSPFQVRLRLLNMLCDMFNPKPQPGEDDNGQP
>NC_023032.1|WP_007707103.1|2853883_2854351_-|manganese-binding-transcriptional-regulator-MntR
MSRRAGKQSSMKVTQLVNVEEHVEGFRQVREAHRRELIDDYVELISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATVGLIEQIPWRGVFLTPEGEKLAQQSRERHQIVENFLLALGVNPDTARRDAEGMEHHVSEETLEVFRRFSQQNGFE
>NC_023032.1|WP_032983481.1|2862219_2864478_+|mechanosensitive-channel-protein
MPWILLLLVSLFSVSANAVSLPAAVVGASTTQKSEAPPAEPDADKKKAAYAALADVLENDASRKALIEQLRQAAATPADQPTPVIKPPVNDEEDKTVLENVTEVTRHYGGELAGRFEQLHRNITNAPHKAFNEKTFLNALTHFSLLAVSVFLFYFAVRACAIPLYRKMGQWGRRKNIHRASWVQLPLMIILAFLIDLALLALTLFVGQLAIEMMNAGSRTIARQQGLFLNAFALIEFFKAILRLMFSPRFPSLRPFVISDASARYWHLRLSGLSSLIGYGLLVAVPIISAQINVQIGALANVVIMLTMTAWALYLIFHNKRAITAGLTRLADRSLAFFSLFIRAFALVWHWLASAYFIVLFFFSLFDPGNSLKTMMGASLKTLAIVSVAAFICGVFTRWLSKTITLSPPVQRNYPELQKRLNGWLSVSLKLARFLTVCVAVMLLLNAWGLFDFWTWLTVGAGEKAVDILIRISLIVFFSAVGWTLLASLIESRLASDIHGRPMPSARTRTLLTLFRNALAVVISTITIMIVLSEIGVNIAPLLAGAGALGLAVSFGSQTLVKDIITGIFIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITTFANFVRGIGSFVANYDVDRFEDTEKANRALRAAVDELMEQEDIRMLVIGEPNVVGIVGLTNTAFTIRVTFTTQPLKQWTVRFALDGMVKKHFDLAGIRPPVQTVQVMQPMPDAAAAAEAQAAAGGALPPANPTV
>NC_023032.1|WP_023899100.1|2864478_2865408_-|23S-rRNA-(adenine(1618)-N(6))-methyltransferase-RlmF
MNRKPGLHPRNRHHSRYDFDALTKSCPALGAFVRPSPAGEPTIDFADPQAVKTLNQALLAHFYGVREWDIPEGFLCPPVPGRADYIHHLADLLAEGNGGAMPAQASVLDIGVGANCIYPLIGQHEYGWRFTGTDTSDEAIRSASAIIDANPGLNRAIRLRRQKTPGAIFNGIIHKNESYDATLCNPPFHDSADAAEAGNARKRRNLGLAADSGLNFGGQQQELWCEGGEVGFITQMIAESKLFARQVLWFTTLVSKGDNLPLLYRALEQAGAVKVVKKEMAQGQKQSRFIAWSFLDTAQRERWAQNRLR
>NC_023032.1|WP_007782261.1|2865519_2866137_+|flavin-reductase-family-protein
MSYYYEPARGHGLPHDPLNAIIGPRPIGWIASQDGAGHRNLAPYSFFNCFNYRPPIIGFSSNGWKDSVKNIAETKEFVWNLATRDLAVAMNETSASLPHGEDEFVRAGLTAAPSRLVRAPRVAESPVNFECRLSQCIQLTSASGEPIDTWLVLGEVVAVHIADTLLEDGIYQTSKAQPILRAGGPSAYYGIDDAQRFDLVRPDAR
>NC_023032.1|WP_004385894.1|2866228_2866495_+|DksA/TraR-family-C4-type-zinc-finger-protein
MASGWANDGAVQDQIDSTVEDAVARARRDLPRGESLEFCEMCDEPIPEARRKAIPGVRLCVNCQQKEDEHRQRYSLYNRRGSKDSQLR
>NC_023032.1|WP_007792040.1|2866755_2867016_+|DUF1471-domain-containing-protein
MKAIKYAVAALTLSAFTFAAGAAEQVSPAQAQNLNKIGVVSAQGARTLDELNDTLAAKAEAAGAKAYSITSARTNDLASGTAVIYN
>NC_023032.1|WP_007782256.1|2867105_2868074_-|DNA-binding-protein-YbiB
MDYRDIIKEIGRGKNHARSLDRETARALYNHMLDGDVPDLEMGAILIALRIKGEGEQEMHGFYDAMQQHTLRLSPPMAKPMPVVIPSYNGARKQANLTPLLALLLSRLGFPVVVHGVSDDPTRVLTETIFTLMGIAPTLHAGQAQAKLDGRDPVFIPVGALCPPLEKQLGMRWRLGVRNSAHTLAKLATPFGESEALRLSSVSHPEYVNKVGQFFIDIGGRGLLMHGTEGEVYANPQRCPQIALIENQAMRILLERQSEAAASPVALPEAKDPEVTARWTERCLSGLEPVPESLKTQMACVLVASGEAQDIPSALARIAQTF
>NC_023032.1|WP_007792034.1|2868402_2868939_+|fimbrial-protein
MKKILLTTTLAALACSSSLTWAAASGEGQVNFTGEILDAACEVVNSQSSPLAVDLGKVSKTAFTGVGSTTNITSFFLQLKNCPASVTTASIKFGGDADSNNASVLALTGDTGKASGVGIQLVDADGTPLDLYTASADYALQTGTATNNLEFGARYIQTGAAVTAGTANGSSTFTVTYN
>NC_023032.1|WP_007782250.1|2869005_2869677_+|molecular-chaperone
MRKLLVISALLMATTAAQAGVIVGGTRVVYSGDKKEASVPVTNNDDINYLIQSWVDTDTPDTAKAPFMVTPPLFRLDAHQDNTLRVVRTGGNLPEDRESLYWLNIKSIPSAAKIEGVNRLQIAIKTRIKLMYRPASVSGKPEDVASALKWHTEGNTLVVENPTPFYMNFNNITINGNKVGDINFAVPKGESRYPLTKGVKHGSISWNIINDFGAISKNWSQNI
>NC_023032.1|WP_007782248.1|2869718_2872271_+|fimbrial-biogenesis-outer-membrane-usher-protein
MLLNKARRPGVFRTRHLALLIACICTGLPLAPARADDYFNPALLDIDNPNQEKTDLTLYEKGPGLAPGKYRVDIYVNNNRIDTRDVTFTLATATDGSRVLQPCLTAEDLKSFGVKTDAFDALQAPAQCADLSVIPSASAHFNVSRQQLQLSIPQSALGQVPRGYIPPEEFNEGINALLLNYSLNGSSQKSLTPGTQDSRDLYANLRPGINLGPWRLRNYSTWRQSDDNQETEKAFSSVYTYAQRDIVSLKGALTLGQSSSPADVFDSIPFTGAQLASDDDMLPDGLRGYAPVVHGIARSNAQVIIRQNGYVISQNNVAPGAFEINDLYPSGGSGDLNVTVKESDGSEQHFVVPYASVPVLQREGRLKYSLTGGRYRSYDDKVLPTPFIQGSAIYGLPHGFTLYGGIQASQPYHALALGVGENLGKFGALSLDMTEATSTLALGDKHTGRSWRVRYSKDLALTGATLSVAGYRFSSENYYGMQEVFDALRSDNQWDNPLRRRQRTELTLEQPLGDSLGSLNVSLLKENYWNSRQAMASLSLGYNNSWHGISYGLNYSLNRNTASTTGDNAIRQNDRVLSFTLSVPLERWLPDTWASYSLNNSQQGTTQNIGMNGTALAGDKLNWNIQQSHDSQDLANNTSLNADYKGAYGEASAGYGQDSHQRQIHYGFQGGIIAHSHGITFGQQMGETVALVEAPGANNTAIANQTGIATDGRGYTIVPFVSPYRRNAIALDTETLPADADVTQAVQTVTPTRGAVVRAHFDTRTGARALMTLRRADGAPVPFGATATAQGVEEAFIVGEDGQVYLTGLQPQGTLQVSWGKDASQHCAATWHLPSQNSSTPFITFSAQCV
>NC_023032.1|WP_032983196.1|2872294_2873275_+|type-1-fimbrial-protein
MRILKLFSALLVLAGSFLFMPHAKAASCTAPMMPYTISVASIAVSSTLPVGSVIPGSDETVNIHGSCTAYSGQVIISCYYGSGSEISGMPGVYSTGVSGIGITLINDRGQRIVGGGISCDTRNTPLGYVSSDGNNTFNFNVTLALVKTSDSIASGSLQQSQTVFGVGVYNQAPIGTPNNISYAGNITYKSVTCSVDPKSLTIPLGNVPASVFKGIGSGSGWYNFDVSATCNNPVSVGIKVSSANGYASTQPSVINLTPEAGNATGIGVQILTDAQNTDFDHYVMVGDIPAANTTLRIPFSLQYYQTAATVTPGSANAVATITVAYR

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Crispr_ID: NC_023032_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023032_13

3079520-3079620

Orphan

Consensus_repeat	Method
ATGGTGGGTGCGCTGCGCTTACCCACCCTACCATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_023032_13

>merge|NC_023032|13|3079520-3079620|CRISPRCasFinder
ATGGTGGGTGCGCTGCGCTTACCCACCCTACCATTCACCTTTTTACTGGGTGTGATGGGTGTTTGAATGGTGGGTGCGCTGCGCTTACCCACCTTACCATT

>NC_023032|13|13|3079520-3079620|CRISPRCasFinder
ATGGTGGGTGCGCTGCGCTTACCCACCCTACCATT	CACCTTTTTACTGGGTGTGATGGGTGTTTGA
ATGGTGGGTGCGCTGCGCTTACCCACCTTACCATT

Protein	Signature genes	Signature genes Name	Protein_function
NC_023032.1\|WP_004385479.1\|3089198_3090116_+\|SPFH/Band-7/PHB-domain-protein	unknown	unknown	gnl\|CDD\|223407
NC_023032.1\|WP_023899188.1\|3074982_3076368_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NC_023032.1\|WP_023899191.1\|3079698_3080844_-\|PLP-dependent-transferase	unknown	unknown	gnl\|CDD\|366438
NC_023032.1\|WP_007781646.1\|3071775_3071988_+\|ribosome-associated-protein-YbcJ	unknown	unknown	gnl\|CDD\|183166
NC_023032.1\|WP_007781578.1\|3082561_3083695_+\|tRNA-2-selenouridine(34)-synthase-MnmH	unknown	unknown	gnl\|CDD\|236982
NC_023032.1\|WP_007781569.1\|3087404_3088175_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181198
NC_023032.1\|WP_007767829.1\|3086092_3086779_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182569
NC_023032.1\|WP_165688903.1\|3082284_3082458_-\|hypothetical-protein	unknown	unknown	unknown
NC_023032.1\|WP_007755817.1\|3070907_3071774_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|236760
NC_023032.1\|WP_007781566.1\|3088233_3089088_+\|co-chaperone-YbbN	unknown	unknown	gnl\|CDD\|225660
NC_023032.1\|WP_032983165.1\|3086746_3087376_+\|multifunctional-acyl-CoA-thioesterase-I/protease-I/lysophospholipase-L1	unknown	unknown	gnl\|CDD\|182521
NC_023032.1\|WP_007781643.1\|3072264_3073764_+\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273923
NC_023032.1\|WP_007781642.1\|3073828_3074845_+\|Mal-regulon-transcriptional-regulator-MalI	unknown	unknown	gnl\|CDD\|182193
NC_023032.1\|WP_004387145.1\|3076544_3077039_+\|peptidylprolyl-isomerase-B	unknown	unknown	gnl\|CDD\|182734
NC_023032.1\|WP_023899190.1\|3078403_3079471_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NC_023032.1\|WP_007781594.1\|3077042_3077765_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NC_023032.1\|WP_007781649.1\|3069917_3070604_+\|hypothetical-protein	unknown	unknown	unknown
NC_023032.1\|WP_023899194.1\|3083684_3086096_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|225669
NC_023032.1\|WP_023899192.1\|3080855_3082226_-\|pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|107204
NC_023032.1\|WP_023899189.1\|3077897_3078407_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119

Protein	Function_ID	Function_description	E-value
NC_023032.1\|WP_004385479.1\|3089198_3090116_+\|SPFH/Band-7/PHB-domain-protein	gnl\|CDD\|223407	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].	4.9939e-76
NC_023032.1\|WP_023899192.1\|3080855_3082226_-\|pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|107204	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.	2.89022e-127
NC_023032.1\|WP_023899191.1\|3079698_3080844_-\|PLP-dependent-transferase	gnl\|CDD\|366438	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.	0
NC_023032.1\|WP_007781646.1\|3071775_3071988_+\|ribosome-associated-protein-YbcJ	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	2.94507e-43
NC_023032.1\|WP_007781578.1\|3082561_3083695_+\|tRNA-2-selenouridine(34)-synthase-MnmH	gnl\|CDD\|236982	PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional.	2.07247e-165
NC_023032.1\|WP_007781569.1\|3087404_3088175_+\|SDR-family-oxidoreductase	gnl\|CDD\|181198	PRK08017, PRK08017, SDR family oxidoreductase.	0
NC_023032.1\|WP_007767829.1\|3086092_3086779_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|182569	PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional.	2.52958e-153
NC_023032.1\|WP_007755817.1\|3070907_3071774_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
NC_023032.1\|WP_032983165.1\|3086746_3087376_+\|multifunctional-acyl-CoA-thioesterase-I/protease-I/lysophospholipase-L1	gnl\|CDD\|182521	PRK10528, PRK10528, multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional.	3.62749e-130
NC_023032.1\|WP_007781643.1\|3072264_3073764_+\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273923	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	6.8992e-174
NC_023032.1\|WP_007781642.1\|3073828_3074845_+\|Mal-regulon-transcriptional-regulator-MalI	gnl\|CDD\|182193	PRK10014, PRK10014, DNA-binding transcriptional repressor MalI; Provisional.	1.12585e-108
NC_023032.1\|WP_004387145.1\|3076544_3077039_+\|peptidylprolyl-isomerase-B	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	2.10618e-122
NC_023032.1\|WP_007781594.1\|3077042_3077765_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	1.48026e-165
NC_023032.1\|WP_023899188.1\|3074982_3076368_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NC_023032.1\|WP_023899190.1\|3078403_3079471_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	3.73106e-175
NC_023032.1\|WP_023899194.1\|3083684_3086096_-\|ABC-transporter-permease	gnl\|CDD\|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	0
NC_023032.1\|WP_007781566.1\|3088233_3089088_+\|co-chaperone-YbbN	gnl\|CDD\|225660	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones].	3.57407e-115
NC_023032.1\|WP_023899189.1\|3077897_3078407_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	8.40275e-89

>NC_023032.1|WP_023899190.1|3078403_3079471_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKQVCVLGNGQLGRMLRQAGEPLGIRVWPVGLDADPQAVPFAQSVITAEIERWPETALTRELARHNAFVNRDVFPLIADRFTQKQLLDKLNLPTAPWQLLASSDEWPQVFETLGELAIVKRRTGGYDGRGQWRLRENETETLPAECYGECIVEQGINFTGEVSLVGARAHDGSAVFYPLTHNLHQDGILRTSVAFPQANATQQKQAETMLRAIMDELNYVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAVTGLPLPQPVVSGPSVMVNLIGTDLNYDWLKLPLVHLHWYDKEVREGRKVGHLNLSDAEATLIDATLEALAPLLPPEYASGIAWAQAHLR
>NC_023032.1|WP_023899189.1|3077897_3078407_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSSSHTPARIAIVMGSRSDWATMQFAAEILDALDVPHHVEVVSAHRTPDKLFSFAERAQENGFQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGLDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILAQHDSALLARLEEWRQKQTDEVLENPDPRGEA
>NC_023032.1|WP_007781594.1|3077042_3077765_+|UDP-2,3-diacylglucosamine-diphosphatase
MATLFIADLHLCSEEPAITAGFLRFLAGTAREADALYILGDLFEAWIGDDDPEPLHREIAAALRALVQSGVPCYFIHGNRDFLLGRRFARESGMQLLPEEQVLDLYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQTLFLALPLRLRRRIAARMRAGSKASNSQKDLAIMDVNPQAVVETMERQQVQWLIHGHTHRPAVHTLEANGKPAHRVVLGAWHSEGSMVKVTPDNVELIAFPF
>NC_023032.1|WP_004387145.1|3076544_3077039_+|peptidylprolyl-isomerase-B
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYDNTIFHRVINGFMIQGGGFEPGMKQKSTKDPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVSTGRSGMHQDVPKEDVIIERVTVSE
>NC_023032.1|WP_023899188.1|3074982_3076368_-|cysteine--tRNA-ligase
MLKIFNTMSRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFIAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGEDFVALVDRMVAEMHKDFDALNILRPDSEPRATQHIPEIIEIVEQLIARGHAYVAGNGDVMFAVESDADYGKLSRQDLEQLQAGARVEVADSKRNPMDFVLWKMSKPGEPSWPSPWGDGRPGWHIECSAMNCKQLGSHFDIHGGGSDLMFPHHENEIAQSTCAHDGEYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLQHYDAETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDASATASGGEAFEARFVEAMNDDFNTPEAYSVLFDMAREVNRLKAEDSSAANQLAAHLRKLAAVLGLLEQAPEQFLQSGAQANDDEVAEIEALIVKRLEARKAKDWAAADAARDRLNEMGIILEDGPQGTTWRRK
>NC_023032.1|WP_007781642.1|3073828_3074845_+|Mal-regulon-transcriptional-regulator-MalI
MKKVSIIDVARQAGVSVSTVSLVLREKGKISAATIEKVHAAIEALGYVHNVAAANLRGKTSNLIGLVVEDLNDPFSTRVTASLVQALEAQGFMVILTQPGRETGRLESCFVSFTRQGVAGVVYLTADSRHRALPAPVVQSTLPLVVVSQSPVEEKLNSVVRDNRQAGGLATRYLIERGHRNIAYIGGTPGCLIREERLFGYRAALSQYGLPWRDEFAPACAEETLAVSQTVRQLLEANNKITALLCHSPHAIIGCLEAIHQVGRTVGKDVFLTQQVSLIGFEDMMHVNLTSPSFTYVSSASEETGHQAAGLIVRLIREPGLPAQRITLSGQLIARGSA
>NC_023032.1|WP_007781643.1|3072264_3073764_+|PTS-transporter-subunit-EIIC
MSLITGLVKSLSKLSMIGRALMLPISLLPAAGLLLAFGDKFHLPLMMNAGGVIFDNLPLLFAIGSAVGLASESGIAALSAAVSVFIINITISTQLGITPEMAASGGKYAMVVGIPTLQMGVFGGLISGILAAWCYNRFHTLQLPEFLGFFSGKRFVAIAAAFLSFLLGLALPYVWQHIQAGIDALSVIVNGDNQAASTFIFGLVERALIPLGLHHIWYPSFWYSFGDYTTQSGQVIHGDQTIWFKMLEEGVKSFSSNTYQNAGKFMQGEFPLMLFALPAACLAMYHEASTKNKKIASGILFSAALTCFLTGITEPVEFTFIFVAPVLYVFNAIMAGLAYMSMYLLDAHIAKSFSAGLIDYISFGILPSFNGYQTHYLNAVIVGIPMAIIYYFTFRFVIRRFDVKTPGRVDVTASVDDKTDAELAGNIVGLLGGKENITSVGACITRLRLEVARPDLVDRDGLNGLGARGVVFVGDNGIQVIFGARAQFIAQSLSGMTGK
>NC_023032.1|WP_007781646.1|3071775_3071988_+|ribosome-associated-protein-YbcJ
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIVISEGLVTVDGAVETRKRCKIVAGQTVSFDGQSVMVTA
>NC_023032.1|WP_007755817.1|3070907_3071774_+|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MAAKIIDGKTIAQQVRLEVAEKVKARVAAGKRAPGLAVVLVGANPASQIYVGSKRKACEEVGFVSRSYDLPETTSEAELLALIDELNADAAIDGILVQLPLPAGIDNVKVLERIAPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRQHVENADLLIVAVGKPGFIPGEWIKEGAIVIDVGINRLENGKVVGDVVFEDAAERAGYITPVPGGVGPMTVATLIQNTLQACVEYHDGEEA
>NC_023032.1|WP_007781649.1|3069917_3070604_+|hypothetical-protein
MNPTSLQNKYRTANENTLAIWSKNAGIGEVRKENYYDPLKLALATGIQPTVPVKVSRLLCELQQLTQDDPLADILPAHGFHFTFLPLTLPLYHVNEPLPANVEQLTTLWTQFDEKKIIIRNLQLVALPGQLLLAGIPEHPAIAMRHSFCDKVLESDWKHELLRRHTGSPLPAPFWHSTLLRYNAAFLPATLRQFFLKHQNMDFGDVTGELILARVNYNWTQCYPLRIN
>NC_023032.1|WP_023899191.1|3079698_3080844_-|PLP-dependent-transferase
MDKFATLSVHSGTHHDQHGAVMPPIYATSTYAQPAPGEHTGYEYSRSGNPTRHALERAIAELEAGSQGFAFASGLAAISTVLELLDKESHIVAVDDVYGGTYRLLENVRKRTAGLTVSWVKPDDLAALEAAIRPETRMIWVETPTNPLLKLADLEAIAGLARRHGLISVADNTFASPAIHRPLTLGFDIVVNSATKYLNGHSDVVAGLAVVGDNPELAQQLAYLQNAVGGVLDPFSSFLTLRGIRTLALRMERHSASALKIAQRLAQHPQVEKVFFPWLESHPQYALARRQMALAGGMISIVVRGDDQRAAQVIKKLRLFTLAESLGGVESLVSQPFSMTHASIPLEQRLANGITPQLIRLSVGIEDAEDLLADLEQALEA
>NC_023032.1|WP_023899192.1|3080855_3082226_-|pyridoxal-phosphate-dependent-enzyme
MSIVDSVTSLIGQTPLLRLAKLDTGPCELLLKLENQNPGGSIKDRVALSMINEAERLGRLSPGGTIIEATAGNTGLGLALIAAQKGYKLILVVPDKMSREKIYHLRALGVDVRLTRSDVNKGHPAYYQDYAQRLADETPGAFYIDQFNNPANPLAHQTTTAPELFAQAEGRIDAIVVGVGSGGTLGGLQAWFRKHSPHTEFVLADPAGSILADQVETGRYHEAGSWLVEGIGEDFIPPLAHLEGVRQAFRVTDAAAFAAARDLLKIEGVLAGSSTGTLLAAALRYCRAQTTPKRVVTFACDSGNKYLSKMFNDDWLRQQGLQTRPAVGDLRDYIAFRHDEGAAVTAASDDSLATVLARMRLYDISQLPVLAQGLVVGIVDEWDLLTFIRGDSQRFLTPVSAAMNREVVTLDKSASERELFEVFERGLVAVITDETRFLGLITRTDVLNRWRNQLES
>NC_023032.1|WP_165688903.1|3082284_3082458_-|hypothetical-protein
MRKPAKAGVCIRKNGENGSKKALFSHRYFRTTLPLDFFTARTAENIPSGSKDPRMIL
>NC_023032.1|WP_007781578.1|3082561_3083695_+|tRNA-2-selenouridine(34)-synthase-MnmH
MQKDAQRRPDSDDALALITRGVTLIDVRAPVEFAQGAMPGAINLPLMNNDERAAVGTCYKQHGQQAALALGHRLVCGEVREARLNAWRLACEHHPEGYLCCARGGMRSHIVQQWLRERGIDYPLVEGGYKRLRQAAMDATDRLSRLPMVLIGGCTGSGKTQLVKALPTGIDLEGLAHHRGSSFGRTLTPQRAQASFENHLAAAMLNHHARWTTLSNPFWVLEDEGKMIGANHLPAVLREQMLQAPVVVVEEPLERRLERLREEYFVQMHAAFQAALGDDAAAWRAYGDYLHHGLYAIRRRLGLARYAELASLQAAALVHQQRSGETHAHFAWLAPLLEGYYDPMYRYQLEKKAQHIAFRGDHQQVDAWLRHRYCASR
>NC_023032.1|WP_023899194.1|3083684_3086096_-|ABC-transporter-permease
MTARWFWREWRSPSLLIVWLALSLAVACVLALGNISDRMEKGLSQQTREFMAGDRTLKSSRAVPQAWLDKAGEDGLAVSRQLSFSTMTFAADRPQLASVKAVDTRYPLYGTLQTRPQGLLPAPGTVLLAPRLMALLGVKPGDPVEVGDATLKVAGEVIQEPDSGFNPFQMAPRLLMNLADVEQTGAVQPGSRLTWRYKFAGEPEALAQYERWLLPQLQPEHRWTGLEQDDSALGKSLQRSQQFLLLSALLTLLLAVAAVAVAMNHYCRSRYDLVAILKTLGAGRAALRKLIVGQWLMVLLATVTGGAAGLLFEAILMQLLKPVLPAALPEASFWPWLWAVGAMVVISLLVGLRPYRLLLATQPLRVLRRDAVANLWPLKIYLPVMALIVVALLAGLMGGRMLLWAVLAGAVVLAALCGLAGWALLWAMRRLRLRSLALRLAVNRLLRQPWQTLSQLATFSLSFMLLALLLVLRGDLLDRWQQQLPPESPNYFLINIAPEQRDAVKAFLAEHQIIPQAFYPIVRARLTQINGKATVGNEDEALNRELNLTWKAERPAHNPLTAGRWPPRAGEVSMEEGLAKRLNIAPGDSVTFTGDTQAFTAKVTSLRKVDWESLRPNFFFIFPPGALDGQPQSYLTSFRADKADTILTQLNREFPTVSVLDIGAILRQIGQVLEQVSRALEVMVVLVTACGVLLLLAQVQVGMHQRRQELVVYRTLGAEKKLLRATLWGEFALLGLVAGLVAAIGAEVALGVLQTRVFDFPWEPDWRLWVMLPLCGALLLSLCGGWLGVRLLKGKALFRQFNG
>NC_023032.1|WP_007767829.1|3086092_3086779_-|ABC-transporter-ATP-binding-protein
MPAENILEVHHLNKSVGQGEHALSILTGVELVVKPGQSIALVGESGSGKSTLLAILAGLDDGTSGEVRLLGEPLHQMDEEARARLRARDVGFVFQSFMLIPTLNALENVELPAMLRGETGKASRQQAQALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPAVLFADEPTGNLDRQTGDRIADLLFSLNRDSGTTLILVTHDPELAARCDRTLRLRDGKLWEEA
>NC_023032.1|WP_032983165.1|3086746_3087376_+|multifunctional-acyl-CoA-thioesterase-I/protease-I/lysophospholipase-L1
MMNFKNVFRWHFPFLLLALLSFRAAAADTLLVLGDSLSAGYRMAADAAWPALLNDKWQQRDVRVVNASISGDTAQQGLSRLPALLKQHQPRWVLIELGGNDGLRGFPPDTLSATLRKIIEQVKTAGAEPLLMQIKLPANYGRRYNQVFEAIYPELAHSFSIPLLPFFMEEVYLKPQWMQDDGIHPNRDAQPFIADWMAQRLAPLVKHDS
>NC_023032.1|WP_007781569.1|3087404_3088175_+|SDR-family-oxidoreductase
MQKSLLITGCSSGIGLACAHELRRQGFQILAACRKPDDVARMNTLGFTGIELDLDSPQSVEAAAQEVIRLTNNRLYGIFNNGGYGVYGPLSTISRAQMEQQFSTNFFGAHQLTMLLLPAMLPHGEGRIVNTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRYSGVKVSLIEPGPIRTRFTDNVNQTQADKPVENPGIAARFTLGPEAVVAKVRHAFESPNPRIRYPVTLVTHAVGILKRLLPTRIMDKILHG
>NC_023032.1|WP_007781566.1|3088233_3089088_+|co-chaperone-YbbN
MSEQNIINLSEANLHQILEQSMTVPVLFYFWSDRSQHCQQLTPVLEKLANQYQGQFILAKVDCDNEQAIAAQFGLRAIPTVYLFSQGQPVDGFQGPQPEEAIRALLDKVLPREEELKAQEALALMQEGKNAEALPLLKEAWQMSNQASEIGLLLAQVQIALNRSEDAEAVLKTIPLQDQDTRYQSLVAQIDLLKQAADTPEIQQLQQQVQQNPDDAQLASQLALQLHQVGRNEEALELLFEHLKKDLSAADGQARKMFQEILAALGTGDALASKYRRQLYSLLY
>NC_023032.1|WP_004385479.1|3089198_3090116_+|SPFH/Band-7/PHB-domain-protein
MLFIIPVLIFVALVIVMAGVKIVPQGFQWTVERFGRYTKTLQPGLNLVVPFMDRVGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFIQVIDAPRAAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINTRLLHIVDEATNPWGIKVTRIEIRDVRPPAELIASMNAQMKAERTKRAYILEAEGVRQAEILKAEGEKQSQILKAEGDRQSAFLQAEARERSAEAEARATKMVSEAIAAGDIQAVNYFVAQKYTDALQQIGSSSNSKVVMMPLEASSLMGSIAGIAELMKESGNERKRP

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Crispr_ID: NC_023032_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023032_14

3148124-3148823

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTCGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CRT

11 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_023032_14

>merge|NC_023032|14|3148124-3148823|PILER-CR,CRISPRCasFinder,CRT
CGGTTTATCCCCGCTCGCGCGGGGAACACCTGCCACGCGTCTGCCGCAGCGTATTCGGCGTCGGTTTATCCCCGCTCGCGCGGGGAACACGCCTATTTCGGGTGAAAAACCGAGATAGACTTCGGTTTATCCCCGCTCGCGCGGGGAACACTAAAGCATTTATTTCATCAATTATTTTTTTATCGGTTTATCCCCGCTCGCGCGGGGAACACTCGCAGTATCAGTCGCTCGATAAACGCTGCGTCGGTTTATCCCCGCTCGCGCGGGGAACACCCGTAATGATTACCCCCGCTCTCCTGCCAGATCGGTTTATCCCCGCTCGCGCGGGGAACACCTGATTTTCGGCATCCCGTCGTACGCGGTCTGCGGTTTATCCCCGCTCGCGCGGGGAACACGCTTCCAGGAACAAGAGAGAAATTATCCAGCGCGGTTTATCCCCGCTCGCGCGGGGAACACCGCAGCGCGATAATGAACGTTGCGGCGATTGGCGGTTTATCCCCGCTCGCGCGGGGAACACCGTGACGTCACCTGAGAAGCGTTGGAGAATTTCGGTTTATCCCCGCTCGCGCGGGGAACACATCATTGATCACTACGGCGTTATGCGCACAGGCGGTTTATCCCCGCTCGCGCGGGGAACACTCCTTAATCAATTGTAAGTTGATGAAAAAACGCGGTTTATCCCCGCTCGCGCGGGGAACAC

>NC_023032|14|1|3148124-3148823|PILER-CR
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CTGCCACGCGTCTGCCGCAGCGTATTCGGCGT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GCCTATTTCGGGTGAAAAACCGAGATAGACTT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TAAAGCATTTATTTCATCAATTATTTTTTTAT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TCGCAGTATCAGTCGCTCGATAAACGCTGCGT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CCGTAATGATTACCCCCGCTCTCCTGCCAGAT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CTGATTTTCGGCATCCCGTCGTACGCGGTCTG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GCTTCCAGGAACAAGAGAGAAATTATCCAGCG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CGCAGCGCGATAATGAACGTTGCGGCGATTGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CGTGACGTCACCTGAGAAGCGTTGGAGAATTT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	ATCATTGATCACTACGGCGTTATGCGCACAGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TCCTTAATCAATTGTAAGTTGATGAAAAAACG
CGGTTTATCCCCGCTCGCGCGGGGAACAC

>NC_023032|14|14|3148124-3148823|CRISPRCasFinder
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CTGCCACGCGTCTGCCGCAGCGTATTCGGCGT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GCCTATTTCGGGTGAAAAACCGAGATAGACTT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TAAAGCATTTATTTCATCAATTATTTTTTTAT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TCGCAGTATCAGTCGCTCGATAAACGCTGCGT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CCGTAATGATTACCCCCGCTCTCCTGCCAGAT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CTGATTTTCGGCATCCCGTCGTACGCGGTCTG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GCTTCCAGGAACAAGAGAGAAATTATCCAGCG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CGCAGCGCGATAATGAACGTTGCGGCGATTGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CGTGACGTCACCTGAGAAGCGTTGGAGAATTT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	ATCATTGATCACTACGGCGTTATGCGCACAGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TCCTTAATCAATTGTAAGTTGATGAAAAAACG
CGGTTTATCCCCGCTCGCGCGGGGAACAC

>NC_023032|14|1|3148124-3148823|CRT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CTGCCACGCGTCTGCCGCAGCGTATTCGGCGT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GCCTATTTCGGGTGAAAAACCGAGATAGACTT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TAAAGCATTTATTTCATCAATTATTTTTTTAT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TCGCAGTATCAGTCGCTCGATAAACGCTGCGT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CCGTAATGATTACCCCCGCTCTCCTGCCAGAT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CTGATTTTCGGCATCCCGTCGTACGCGGTCTG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	GCTTCCAGGAACAAGAGAGAAATTATCCAGCG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CGCAGCGCGATAATGAACGTTGCGGCGATTGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CGTGACGTCACCTGAGAAGCGTTGGAGAATTT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	ATCATTGATCACTACGGCGTTATGCGCACAGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	TCCTTAATCAATTGTAAGTTGATGAAAAAACG
CGGTTTATCCCCGCTCGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_023032.1\|WP_023899228.1\|3150758_3151511_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_023032.1\|WP_023899221.1\|3142636_3143464_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
NC_023032.1\|WP_023899231.1\|3157959_3158271_+\|MGMT-family-protein	unknown	unknown	gnl\|CDD\|226219
NC_023032.1\|WP_007781447.1\|3146063_3146315_-\|hypothetical-protein	unknown	unknown	unknown
NC_023032.1\|WP_023899220.1\|3140263_3140923_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NC_023032.1\|WP_007781449.1\|3145845_3146067_-\|hypothetical-protein	unknown	unknown	unknown
NC_023032.1\|WP_071603056.1\|3147494_3147854_-\|hypothetical-protein	unknown	unknown	unknown
NC_023032.1\|WP_007781436.1\|3149212_3150130_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_023032.1\|WP_007781426.1\|3158302_3158875_-\|YbaY-family-lipoprotein	unknown	unknown	gnl\|CDD\|225668
NC_023032.1\|WP_007781434.1\|3150126_3150777_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187858
NC_023032.1\|WP_007781432.1\|3151520_3152594_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NC_023032.1\|WP_007781431.1\|3152605_3153211_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	pfam09485_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_023032.1\|WP_007781439.1\|3148919_3149213_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NC_023032.1\|WP_007781430.1\|3153211_3154768_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|187860
NC_023032.1\|WP_007781453.1\|3143520_3144138_-\|membrane-protein	unknown	unknown	gnl\|CDD\|225239
NC_023032.1\|WP_032983424.1\|3155120_3157754_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NC_023032.1\|WP_007791498.1\|3141087_3142644_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|227279
NC_023032.1\|WP_023899219.1\|3139475_3140267_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|236863
NC_023032.1\|WP_032967978.1\|3147033_3147492_-\|DUF3828-domain-containing-protein	unknown	unknown	gnl\|CDD\|372360
NC_023032.1\|WP_023899223.1\|3144224_3145646_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089

Protein	Function_ID	Function_description	E-value
NC_023032.1\|WP_023899228.1\|3150758_3151511_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.57235e-44
NC_023032.1\|WP_023899221.1\|3142636_3143464_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	3.59899e-15
NC_023032.1\|WP_023899231.1\|3157959_3158271_+\|MGMT-family-protein	gnl\|CDD\|226219	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	6.11102e-49
NC_023032.1\|WP_023899220.1\|3140263_3140923_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	4.38365e-103
NC_023032.1\|WP_007781430.1\|3153211_3154768_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	1.11686e-145
NC_023032.1\|WP_032983424.1\|3155120_3157754_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	5.32097e-112
NC_023032.1\|WP_007781436.1\|3149212_3150130_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	6.18145e-156
NC_023032.1\|WP_007781426.1\|3158302_3158875_-\|YbaY-family-lipoprotein	gnl\|CDD\|225668	COG3126, COG3126, Uncharacterized protein conserved in bacteria [Function unknown].	7.41049e-53
NC_023032.1\|WP_007781434.1\|3150126_3150777_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	6.90146e-70
NC_023032.1\|WP_007781432.1\|3151520_3152594_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	4.66688e-117
NC_023032.1\|WP_007781431.1\|3152605_3153211_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.43187e-26
NC_023032.1\|WP_007781439.1\|3148919_3149213_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.21674e-65
NC_023032.1\|WP_007781453.1\|3143520_3144138_-\|membrane-protein	gnl\|CDD\|225239	COG2364, COG2364, Predicted membrane protein [Function unknown].	2.16298e-38
NC_023032.1\|WP_007791498.1\|3141087_3142644_+\|EAL-domain-containing-protein	gnl\|CDD\|227279	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms].	0
NC_023032.1\|WP_023899219.1\|3139475_3140267_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	3.78932e-142
NC_023032.1\|WP_032967978.1\|3147033_3147492_-\|DUF3828-domain-containing-protein	gnl\|CDD\|372360	pfam12883, DUF3828, Protein of unknown function (DUF3828). This is a family of bacterial proteins of unknown function.	3.75196e-08
NC_023032.1\|WP_023899223.1\|3144224_3145646_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	5.41835e-95

>NC_023032.1|WP_071603056.1|3147494_3147854_-|hypothetical-protein
MTWDKYAAIRHAQDRAYSNSYHKCELFVKEAIIAGGVDIHPTPSAKDMGKALIQAGFYEVYGEPVAGDVAVISSIPGHPDGHVCIYDGQKWISDFRQRSFYPGDSYRRAHPAFKLYRHY
>NC_023032.1|WP_032967978.1|3147033_3147492_-|DUF3828-domain-containing-protein
MNKTICTLFITVALCSTAAVASDETLEQKPQQAALNFNRWYIGGFQNTHQDLLDSKQIRHYVTKTTLEKLRRARQNENEFYDSDFFIKAQDILPDWTSHIVITDVEYDPVCTQVYVSFGQNPAHRVIDCMVKEAGIWKVQSVARVPVAKGKS
>NC_023032.1|WP_007781447.1|3146063_3146315_-|hypothetical-protein
MTAAVLNVKIDTDLKEKLRQYAEQHGETLSATTEKLLQNALVLADEDDAVNSEEIDSQHTEEDVSPLSVKEIKALRKLLKKRK
>NC_023032.1|WP_007781449.1|3145845_3146067_-|hypothetical-protein
MKDASLSTTAATYREACELLRSGYVKHVRLGWDVGSDEFFRIASDWCDAGAKIKKEGDAFVISLKGFPVPRQH
>NC_023032.1|WP_023899223.1|3144224_3145646_+|PLP-dependent-aminotransferase-family-protein
MNYRRTGTASLLRLLGHWQQEHSRLPVYRQLAQALRLIILDGRLPLASRLPGERELAGALGISRTTVASALGLLRDEGFLISRHGAGSAIALPASASVPTLTGSGGALDLSTAALSAGPEVLAACQRAVAQLPDYLGHTGYDPQGLLRLRETIAARYDARGLPTSPDQVMLVNGAVSGFALILRLLTGPGDRVVVDNPTYPLAIAAIRGASCRPVPVSLASQGWDPDGLAATFAQTSPRLAYIIPDYHNPTGYCMDAATRERVAVVATTSRTTLVVDETMVDLWYEDAPPPPLAAFDTQDTVVTLGSAGKSFWGGLRLGWIRASARTIASLIQMRDTLDLGSPLLEQLAVATLIEDAPHFLPPRRTALKARRDACLDAMQRYFPQWRTTLPQGGLSFWVELPRPLATRFAASAEGLGIHLGPGNRFGVDGAFERFLRMPFTLETERLEEAFGRLQPLWHQLMEARAPTARGLV
>NC_023032.1|WP_007781453.1|3143520_3144138_-|membrane-protein
MWRRLVQLYVGLSLYGVSTAMFVRADLGTDPWNVFHVGLARLLSLNLGAVIIGVGVLVLLLWVPLRQKPGLGTISNVIMIGLAADAALAVLPAPSSLALRGVLLVAAVVLNALATGMYIGAGFGAGPRDGLMTGINARTGWSVRSVRTAIEITVLLAGWAMGGTLGIGTVVYALAIGPLIQLCLPWFQVRRVKPVTPAVAVAEKG
>NC_023032.1|WP_023899221.1|3142636_3143464_-|GNAT-family-N-acetyltransferase
MPNPATLRAQPALHWSSEALASMLCCCFDGYLVPFQLDGAVFAYRFGAENVCLNASRVWLAGETVVALALVARRGWRSRLAAFAIHPDWRGKGVGKTLMTQLLDEAHERGEKSMTLEVIVGNDAGQALYERVGFTCEKTLVGFQAHSPAAFVNTQALMPCDPHDIAQRMAAQVEDLPWLMAPETAQALPGMGFSLDDKAFAIIATGFAQPQLRALWVAPQARREGRARQLLSLLHERFAGLMTPVAVDQRLAPLFEQSGFRIQPVRQYEMRHRLN
>NC_023032.1|WP_007791498.1|3141087_3142644_+|EAL-domain-containing-protein
MTIARLIKIVTGVLLLSVLLPVAFSFWLARHQAEQHFVMELDAYTERTLIRTNDIMQQAKASLAKINSFTGEPCSEAHLQAMRRTSFVFRHVQEVVYLKDMTPVCSSLVGRSTSKPLPPPTWVNDENYGIWFSTQNDIGLSVPMVMIAHGPHMVLIDPSSFIDLIPFSAWPINTAIIGLPRNRVLASSGPFDKTVWEMARKSGAQKMEYQGNIYLIHREPRSGIAVVAWASQAPQTAEIRKLQLIWLPAGILISLALAFWLLRLLRRLQSPRYRLQDGITNNELVMHYQPIIRLADGQPIGAEALIRWPQPDGSMLTPDIFIPLAEQTGLIGPLTRRIVHNVLADLGDWLRTHPQQHISINISAFDLHDPQFVDMFSEALAQHGVAPHQLALEITERGFADPTLSGPIIERLRAAGHKIYIDDFGTGYSSLSYLEDLDVDILKIDKSFVDALEYKTVTPHIIEMAKTLKLEMVAEGVENQSQALWLREHGVQYAQGWLYSKALPADMFIAWCRQHGVS
>NC_023032.1|WP_023899220.1|3140263_3140923_+|ABC-transporter-permease
MSFDDLWPLLAQGTLETLYMVGLAALFTVLIGLPVGVVLFITRRGGVLPQPRLNSVLGGVINVGRSLPFIVLLIALIPLTRLIIGTTLGSTAAVVPITIGAFPFFARVVENALDEVDHGRTEAIISMGGNVWHVISKALLPEALPALLAGVTLTVVMLIGFSSMAGVIGGGGLGDLAIRYGYQRFNNEVMAATVLILVALVQGVQTLGDRLVRRLAHRR
>NC_023032.1|WP_023899219.1|3139475_3140267_+|ATP-binding-cassette-domain-containing-protein
MITLDGLSKTYAGEGRPALDDVSLAIPQGAVYGILGRSGAGKSTLLRCLNLLERPTTGHIIMNGVDITRLDDRALRQHRQRTAMVFQHFNLLHARTVADNVAVPLEIAGVPRTARRERVADLLALVGLMDKADAFPSRLSGGQKQRVGIARALAARPDVLLCDEATSALDPETTASILALLADINRQLGLTIVLITHELEVVKAICDHAALLENGHLVESGRLADLLTAPWSVLRQTLVRDNAAWQAFLRRHGVEERIWCEVA
>NC_023032.1|WP_007781439.1|3148919_3149213_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTESVPPRLRGRLAIWLLELRAGVYVGDVSRRVREMIWHQINKLAEEGNVVMAWATNHESGFDFQTYGVNRRIPVDLDGLSLVSFLPLENQ
>NC_023032.1|WP_007781436.1|3149212_3150130_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSFVPLNPIPLNDRTSMIFLQYGHLDVLDGAFVLVDKTGVRTHVPVGAIACIMLEPGTRVSHAAIRLASQVGTLLVWVGEAGVRLYASGQPGGARADKLLYQAKLALDETLRLKVVRKMYELRFGEPPPARRSVEQLRGIEGARVRQTYALLAKRYGVKWNGRRYDPKDWEKGDVVNQCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFDAVVPKAFEIAARHPEQPDREVRLACRDIFRSEKLTGKLIPLIETVLAAGEIEPPQPATDMLPPAIPQADSLAEAGFRSR
>NC_023032.1|WP_007781434.1|3150126_3150777_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSKITLPTSRLTPERLMEMMARGEYVMHQWLWELFPGVAQRQYLYRRETLQNGFCFYLLSASAPERTHPLFEIQTRLFAPALDEGAALRFSLRANPVITRNGKRHDVLMNAKREVRPFSQRGEVWGKQEQAALAWLEAQGDKGGFRLSQACVAAYRQQQVMKKRGELIQFSTVDYEGALTVTDPAQFIARLHEGYGKCRAFGCGLMLIKPGDGV
>NC_023032.1|WP_023899228.1|3150758_3151511_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MNRYLIFQLQGPMASWGEIAVGEVRHTRALPGRSALLGLLAAALGIRRDDEAALNALNQHYQFIVCAGKSSAWARDYHTVQVPREARKVRYFIRKDELRDAQMLVTTVSCRDYYADGYWLVAVAATPGAPYTLEALQTALRAPVFPLYLGRKSHPLGLPLWPHLCEGEAASLLREAQARYSAALSELNPALSALAQFHPHLWWEGEHDGLTADEIQIWRDQPLSRRRWDFDIRTVQQGRLTQEATCISQK
>NC_023032.1|WP_007781432.1|3151520_3152594_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVTIGGASRLRVSSQSLKRAWRTSELFEAALGGHIGTRTARIGREAAEIMLAGGIAQAKAIEWGGAIAACFGKVKSEKDKKKLEKDPLINTDTEQLAHVSPTERESVHALARTLAVEKRAPTVDELNFLRKDAMAVDIALFGRMLASTPEHNIEAACQVAHAFGVGETLMEDDFFTAVDDLREAAAEDAGAGHIGELGFGSALFYTYLCIDRDRLLENLNGDEQFMAKTLRALGECTLKISPTGKQNSFASRAYASWALAEKSTEQPRSLAAAFWEPVTGHDQLDEAVRRITTLRDNMNKVYGGGATPCAVLYGDKGEGSVAQLLDFISA
>NC_023032.1|WP_007781431.1|3152605_3153211_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSILSQAHRESLLKWYALLNEQQGRRLRASLRRSHTLNEVWLSEGFRSLAARVPTLWNVPGREWRFCALGIVAALAAHVKTVDTRASFAEQLGHKEGNHAVMSELRFRRLSQARTQEELFRQLRRAVQLLRGVVNLPDLAEGVFRWCAEEDERERRAARRRAPTDYIRVRWALDYYMAGNPSDAPDAENTDLPADTATTQE
>NC_023032.1|WP_007781430.1|3153211_3154768_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MSSLITTKWLPVIYRDGTRGKIAPLDLADENILDLILPRPDFQGAAWQFLLGLLQTALAPKDAESWEDIWEDGLTAEAIRNALAPLEKLFEFCPDTPSFMQDFEPLDGESVALAQLLPETPGAQTLKLNKDHFIKRGTTEKLCPHCAALALFSLQLNAPSGGKGYRTGLRGGGPMTTLLELHRYQGERPALWRRLWLNILPQREGRLPRPACYDARVFPWLAPTRTSEKAIVTPEQADALQAYWGMPRRIRVDFSTTLPGTCDLCGEPGDALLTSMTVKNYGVNYVGWMHPLTPHRIPKKEGGEMFSVKGQPGGLLWRDWLGLMMESESDNNREQPARIVKIRQQKPLPGAETGLWCFGYDFDNMKARCWYEHHLPFLQLPESQQPFIRQTLSDAARVATLMLSKLRSALKEAWFGEGATVRGDFSFIDVDFWQQTQSRFLELVEAVKADTSGDNRALLSAWNSDIWRYTRRYFDDHALTNPQERTEFADIMKARKKFFTQAKPAAKGARAKKTQEAN
>NC_023032.1|WP_032983424.1|3155120_3157754_-|CRISPR-associated-helicase/endonuclease-Cas3
MSGYLYWGKSRKGENHQGDDYHLLQWHSLDVAACGYVMVMENHFNAASLFAALGIDDRETAATFFAWLLCWHDIGKFARLFQQQYRCDALACGLRDVSDSRHHHTVTGTWLWQNHLGDCVAQGMTGPLSARERKRVLDRWMPAIIGHHGKPVTCENCHNDFLPEDIAAARAFAGAVSALFPSVALPTLWKDDNWRETFPAKSWLVSALTVLADWTGSANLHFPWVAQAMPFEAYWARAVKQAQRALRLLPPASDVAPFNGIETLFPFITRPTPLQQKALEMDIHARGPHLIILEDVTGAGKTEAALVLAHRLMAAGQARGLYIGLPTMATANAMYARMSQAWLRLYREGSHPSLVLAHSARKLSAGFNASVWARELLPNDSGDEAAAYEGCAAWFAQSPKKALLAETGVGTLDQAMMAVMAFKHQNLRLLGLNDKVLIADEIHSYDAYMSHVVEKLVETRARYGNATILLSATLSQAQRDRLIAAFYRGLNTTRESPRLGPDDYPWITHLHAQGIDGQRVATRAQVQRRVAIGWMEDDDACFDKIETVAREGGCIGWIRNSVDDAVNSYRELIRRGNIPEENIILFHSRFAFIDRNDKEQTTLEWFGKQNAVNRSGKVIISTQVIEQSIDIDLDYLISDLAPVDLLIQRAGRLQRHSRDKQGQLKLTGADERPAPRLDILAPRWQAQPDEKWLTSAMRNTSYVYPAHSRLWLTQRVLREQGEIKMPEAARLLIEAVYGEEIDVPEGMKRSEDAALADYYCQRAIASKYEISLDVGYSVESAELWGPDVSTRIGELTIDLWLARDTPQGIMPYAQGDNAWEMSALRVRKSWWEKHRGEFTLLCGEALSQWCREQRKPEAVVILLPGGYSAKEGLIGEV
>NC_023032.1|WP_023899231.1|3157959_3158271_+|MGMT-family-protein
MNHHDTFAQRVYQIVAAIPEGCVTTYGEVARLAGSPRAARQVGGVLKRLPEGSTLPWHRVVNRHGEISLTGPDLQRQRQALLAEGVQVSGKGEIDLARYGWRY
>NC_023032.1|WP_007781426.1|3158302_3158875_-|YbaY-family-lipoprotein
MKLVHMLSGLAVAVALAGCAQDKSADIAVPAPNPNTSGVATKPVIKQPNVSGTVWIRQKVALPPDAVLTVTLSDATQANAPSKVLAQKVVRTEGKQAPFSFVLPFNPSDIQPNARVLLSAAITVKDKLVFITDRVQPAVNQGGTKIDLTLVPVQQTAVPVQSGGGAVTSVPSTSPTQVTPSSAVPAPTTY

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Crispr_ID: NC_023032_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023032_15

3174446-3175328

Unclear

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CRISPRCasFinder
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CRT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	PILER-CR

14 spacers

The CRISPR arrays of NC_023032_15

>merge|NC_023032|15|3174446-3175328|CRISPRCasFinder,CRT,PILER-CR
CGGCTTATCCCCGCTCGCCCGGGGAACAGTGGTGGCCAGGAAAAGCCTACGACGACGTGTTCGGTTTATCCCCGCTCTCGCGGGGAACAGTAAATCCCCCATTTATCAGGAAATAGATAGTTCGGTTTATCCCCGCTCTCGCGGGGAACAGTCTGGTATTCCGGCAGGTCATACAGGCCCAGCCGGTTTATCCCCGCTCGCGCGGGGAACAGCGCGCATAATCTGGTCGAGCATGTCTTCCTGGCGGTTTATCCCCGCTCGCGCAGGGAACAGTCAGGAAGAACTGGTAAGGATATGGAGTTAATCGGTTTATCCCCGCTCGCGCGGGGAACAGTTCAGGACGTAAGAGCGGAGCTGAACGGCCCACGGTTTATCCCCGCTCGCGCGGGGAACAGTATCGGATGAGCAATCGCCCCTGTTAAAAGTCCGGTTTATCCCCGCTCGCGCGGGGAACAGTGTCGCCAAAGTTTTTTGTTTTTATTTTGTCGCGGTTTATCCCCGCTCGCGCGGGGAACAGAGCGCGTCGTATAACTGGTCGTCTGTGTATTCCGGTTTATCCCCGCTCGCGCGGGGAACAGGGCGCTGGCCGTAGGTGTTGAAGAGTGGTGCGCGGTTTATCCCCGCTCTCGCGGGGAACAGTGCGTTAAGTATCGCCTGTTCGCGGCTTAATTCGGTTTATCCCCGCTCGCGCGGGGAACAGGTTAAACGCGGAACGGCTGAATTAGCCGATAACGGTTTATCCCCGCTCGCGCGGGGAACAGTAGCGCGCTGATATTGAGCCTCAGCCTCCCTGCGGTTTATCCCCGCTCGCGCGGGGAACAGATATCGTCCCCGCATGCCATCCGTGCAATTTACGGTTTATCCCCGCTCGCGCGGGGAACAG

>NC_023032|15|15|3174446-3175328|CRISPRCasFinder
CGGCTTATCCCCGCTCGCCCGGGGAACAG	TGGTGGCCAGGAAAAGCCTACGACGACGTGTT
CGGTTTATCCCCGCTCTCGCGGGGAACAG	TAAATCCCCCATTTATCAGGAAATAGATAGTT
CGGTTTATCCCCGCTCTCGCGGGGAACAG	TCTGGTATTCCGGCAGGTCATACAGGCCCAGC
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CGCGCATAATCTGGTCGAGCATGTCTTCCTGG
CGGTTTATCCCCGCTCGCGCAGGGAACAG	TCAGGAAGAACTGGTAAGGATATGGAGTTAAT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TTCAGGACGTAAGAGCGGAGCTGAACGGCCCA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TATCGGATGAGCAATCGCCCCTGTTAAAAGTC
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TGTCGCCAAAGTTTTTTGTTTTTATTTTGTCG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	AGCGCGTCGTATAACTGGTCGTCTGTGTATTC
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GGCGCTGGCCGTAGGTGTTGAAGAGTGGTGCG
CGGTTTATCCCCGCTCTCGCGGGGAACAG	TGCGTTAAGTATCGCCTGTTCGCGGCTTAATT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GTTAAACGCGGAACGGCTGAATTAGCCGATAA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TAGCGCGCTGATATTGAGCCTCAGCCTCCCTG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	ATATCGTCCCCGCATGCCATCCGTGCAATTTA
CGGTTTATCCCCGCTCGCGCGGGGAACAG

>NC_023032|15|2|3174446-3175328|CRT
CGGCTTATCCCCGCTCGCCCGGGGAACAG	TGGTGGCCAGGAAAAGCCTACGACGACGTGTT
CGGTTTATCCCCGCTCTCGCGGGGAACAG	TAAATCCCCCATTTATCAGGAAATAGATAGTT
CGGTTTATCCCCGCTCTCGCGGGGAACAG	TCTGGTATTCCGGCAGGTCATACAGGCCCAGC
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CGCGCATAATCTGGTCGAGCATGTCTTCCTGG
CGGTTTATCCCCGCTCGCGCAGGGAACAG	TCAGGAAGAACTGGTAAGGATATGGAGTTAAT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TTCAGGACGTAAGAGCGGAGCTGAACGGCCCA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TATCGGATGAGCAATCGCCCCTGTTAAAAGTC
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TGTCGCCAAAGTTTTTTGTTTTTATTTTGTCG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	AGCGCGTCGTATAACTGGTCGTCTGTGTATTC
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GGCGCTGGCCGTAGGTGTTGAAGAGTGGTGCG
CGGTTTATCCCCGCTCTCGCGGGGAACAG	TGCGTTAAGTATCGCCTGTTCGCGGCTTAATT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GTTAAACGCGGAACGGCTGAATTAGCCGATAA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TAGCGCGCTGATATTGAGCCTCAGCCTCCCTG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	ATATCGTCCCCGCATGCCATCCGTGCAATTTA
CGGTTTATCCCCGCTCGCGCGGGGAACAG

>NC_023032|15|2|3174629-3175328|PILER-CR
CGGTTTATCCCCGCTCGCGCGGGGAACAG	CGCGCATAATCTGGTCGAGCATGTCTTCCTGG
CGGTTTATCCCCGCTCGCGCAGGGAACAG	TCAGGAAGAACTGGTAAGGATATGGAGTTAAT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TTCAGGACGTAAGAGCGGAGCTGAACGGCCCA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TATCGGATGAGCAATCGCCCCTGTTAAAAGTC
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TGTCGCCAAAGTTTTTTGTTTTTATTTTGTCG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	AGCGCGTCGTATAACTGGTCGTCTGTGTATTC
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GGCGCTGGCCGTAGGTGTTGAAGAGTGGTGCG
CGGTTTATCCCCGCTCTCGCGGGGAACAG	TGCGTTAAGTATCGCCTGTTCGCGGCTTAATT
CGGTTTATCCCCGCTCGCGCGGGGAACAG	GTTAAACGCGGAACGGCTGAATTAGCCGATAA
CGGTTTATCCCCGCTCGCGCGGGGAACAG	TAGCGCGCTGATATTGAGCCTCAGCCTCCCTG
CGGTTTATCCCCGCTCGCGCGGGGAACAG	ATATCGTCCCCGCATGCCATCCGTGCAATTTA
CGGTTTATCCCCGCTCGCGCGGGGAACAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_023032.1\|WP_023899235.1\|3162242_3164021_-\|SmdB-family-multidrug-efflux-ABC-transporter-permease/ATP-binding-protein	unknown	unknown	gnl\|CDD\|182733
NC_023032.1\|WP_004387728.1\|3179153_3181508_-\|endopeptidase-La	unknown	unknown	gnl\|CDD\|182730
NC_023032.1\|WP_007781383.1\|3175541_3175940_-\|YbgC/FadM-family-acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|129161
NC_023032.1\|WP_023899242.1\|3176579_3178457_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|182731
NC_023032.1\|WP_007781408.1\|3166423_3167470_+\|PLP-dependent-cysteine-synthase-family-protein	unknown	unknown	gnl\|CDD\|223110
NC_023032.1\|WP_032983423.1\|3171017_3172748_+\|SgrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226909
NC_023032.1\|WP_007781394.1\|3170105_3170924_-\|HMP-PP-phosphatase	unknown	unknown	gnl\|CDD\|185080
NC_023032.1\|WP_004387733.1\|3185665_3185983_-\|transcriptional-regulator-BolA	unknown	unknown	gnl\|CDD\|183243
NC_023032.1\|WP_004387734.1\|3186281_3186860_+\|lipoprotein	unknown	unknown	gnl\|CDD\|183242
NC_023032.1\|WP_032967976.1\|3167864_3168302_+\|hypothetical-protein	unknown	unknown	unknown
NC_023032.1\|WP_004387552.1\|3161672_3162011_-\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|182629
NC_023032.1\|WP_004387729.1\|3181694_3182969_-\|ATP-dependent-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NC_023032.1\|WP_023899237.1\|3164013_3165789_-\|SmdA-family-multidrug-ABC-transporter-permease/ATP-binding-protein	unknown	unknown	gnl\|CDD\|182732
NC_023032.1\|WP_007781382.1\|3176064_3176433_-\|helix-hairpin-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|129520
NC_023032.1\|WP_007781387.1\|3172777_3173473_+\|7-cyano-7-deazaguanine-synthase-QueC	unknown	unknown	gnl\|CDD\|182967
NC_023032.1\|WP_004387730.1\|3183092_3183716_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NC_023032.1\|WP_032983422.1\|3173465_3174302_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293828
NC_023032.1\|WP_004387554.1\|3165846_3166308_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NC_023032.1\|WP_004387731.1\|3184016_3185315_-\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NC_023032.1\|WP_007781367.1\|3178671_3178944_-\|DNA-binding-protein-HU-beta	unknown	unknown	gnl\|CDD\|259853

Protein	Function_ID	Function_description	E-value
NC_023032.1\|WP_023899235.1\|3162242_3164021_-\|SmdB-family-multidrug-efflux-ABC-transporter-permease/ATP-binding-protein	gnl\|CDD\|182733	PRK10790, PRK10790, SmdB family multidrug efflux ABC transporter permease/ATP-binding protein.	0
NC_023032.1\|WP_004387728.1\|3179153_3181508_-\|endopeptidase-La	gnl\|CDD\|182730	PRK10787, PRK10787, DNA-binding ATP-dependent protease La; Provisional.	0
NC_023032.1\|WP_007781383.1\|3175541_3175940_-\|YbgC/FadM-family-acyl-CoA-thioesterase	gnl\|CDD\|129161	TIGR00051, Acyl-CoA_thioesterase_YbgC, acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon. [Unknown function, General].	2.20104e-44
NC_023032.1\|WP_023899242.1\|3176579_3178457_-\|peptidylprolyl-isomerase	gnl\|CDD\|182731	PRK10788, PRK10788, periplasmic folding chaperone; Provisional.	0
NC_023032.1\|WP_007781408.1\|3166423_3167470_+\|PLP-dependent-cysteine-synthase-family-protein	gnl\|CDD\|223110	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism].	4.3181e-107
NC_023032.1\|WP_032983423.1\|3171017_3172748_+\|SgrR-family-transcriptional-regulator	gnl\|CDD\|226909	COG4533, COG4533, ABC-type uncharacterized transport system, periplasmic component [General function prediction only].	0
NC_023032.1\|WP_007781394.1\|3170105_3170924_-\|HMP-PP-phosphatase	gnl\|CDD\|185080	PRK15126, PRK15126, HMP-PP phosphatase.	0
NC_023032.1\|WP_004387733.1\|3185665_3185983_-\|transcriptional-regulator-BolA	gnl\|CDD\|183243	PRK11628, PRK11628, transcriptional regulator BolA; Provisional.	2.56413e-75
NC_023032.1\|WP_004387734.1\|3186281_3186860_+\|lipoprotein	gnl\|CDD\|183242	PRK11627, PRK11627, hypothetical protein; Provisional.	3.11964e-134
NC_023032.1\|WP_004387552.1\|3161672_3162011_-\|P-II-family-nitrogen-regulator	gnl\|CDD\|182629	PRK10665, PRK10665, P-II family nitrogen regulator.	1.07685e-65
NC_023032.1\|WP_004387729.1\|3181694_3182969_-\|ATP-dependent-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NC_023032.1\|WP_023899237.1\|3164013_3165789_-\|SmdA-family-multidrug-ABC-transporter-permease/ATP-binding-protein	gnl\|CDD\|182732	PRK10789, PRK10789, SmdA family multidrug ABC transporter permease/ATP-binding protein.	0
NC_023032.1\|WP_007781382.1\|3176064_3176433_-\|helix-hairpin-helix-domain-containing-protein	gnl\|CDD\|129520	TIGR00426, Hypothetical_protein_ybaV_precursor., competence protein ComEA helix-hairpin-helix repeat region. Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model. [Cellular processes, DNA transformation].	1.5327e-26
NC_023032.1\|WP_007781387.1\|3172777_3173473_+\|7-cyano-7-deazaguanine-synthase-QueC	gnl\|CDD\|182967	PRK11106, PRK11106, queuosine biosynthesis protein QueC; Provisional.	0
NC_023032.1\|WP_004387730.1\|3183092_3183716_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	1.88422e-159
NC_023032.1\|WP_032983422.1\|3173465_3174302_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293828	cd07742, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	8.24864e-121
NC_023032.1\|WP_004387554.1\|3165846_3166308_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.6465e-50
NC_023032.1\|WP_004387731.1\|3184016_3185315_-\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	0
NC_023032.1\|WP_007781367.1\|3178671_3178944_-\|DNA-binding-protein-HU-beta	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	7.3754e-45

>NC_023032.1|WP_032983422.1|3173465_3174302_-|MBL-fold-metallo-hydrolase
MRVHHLNCGCMCPLGGALYDGFSKGLHAHLICHCLLIETDHHGLVLVDTGFGCDDMRHPGRRLPLFFRALNNIQYRESLTALHHINALGFKPEDVRHIVLTHLDFDHAGGLSDFPQAQVHLMQREMTAADGRGTWLDSARYRPGQWGNRSGWHGYHPHGEAWFGFSAVRALDGLPPEILLIPLPGHTEGHAGVAIDTPQGWLLHGGDAWFYRDEMAADPHCTPGLRFYQWMMQKDKAARLANQKRLRLLAADASAGVTLFCSHDAREFERLSGKNLAI
>NC_023032.1|WP_007781387.1|3172777_3173473_+|7-cyano-7-deazaguanine-synthase-QueC
MKRAVVVFSGGQDSTTCLIQALHQYDEVHCVTFDYGQRHRAEIDVASTLAASLGARAHKVLDVTLLNELAVSSLTRDSIPVPDYDPDAEGLPSTFVPGRNILFLTLASIYAYQVQAEAVITGVCETDFSGYPDCRDEFVKALNHAVALGMARDVRFETPLMWLNKAETWALADYWGKLDVIRQQTLTCYNGIQGDGCGECAACHLRANGLSQYQDDKPAIMAAMKQKTGLK
>NC_023032.1|WP_032983423.1|3171017_3172748_+|SgrR-family-transcriptional-regulator
MRLLNRLNQFQRLWQPSEGAPQAVTISELAARCFCSERHVRTLLRQLQQQGWLRWHAQSGRGKRGELTFLVSPHTVRAGMMETVLRQGQTHNALALAQLASGQLRQLLHPFLGGQWHNDTPTLRIPYYRPLEPLKPGFLPGRAEQHLARQIFSGLTRFNPHTARPEGDMAHHWSVSPDGLSWRFYLRPTLHWHNHEPIDAWQLRQRLQQLLELETLRQLFASVREITVEHKHCLRVDLTRPDHWLAWRLASHGCYLAHPEDTTIGSGPFRLATFTPELVRIESHDRCHLGHPLLNAVEYWITPGLFDSALGTSCRHPVQIAIGQQEELVHLRPVSNSISLGFCYLGIRQNGRLSYAQARWLMQLVHRSGMIDSLPLDEHLITPSNALLPGWHLPQWPEEPPPPLPPSLTLVYHLPVELPVMARQLQHELAQRGCALTLHFHNAKNWDGCTQLAQADIVMGDRLIGEAPEYTLEQWLRCDPLWRHLLTGPQRAHLDATLDAVQSHPDEQSRNAALREVWQTLMHDAVITPLFNYRYQISAPPGVNGIELNALGWFDFSRAWLPPPQEAGGHASTALP
>NC_023032.1|WP_007781394.1|3170105_3170924_-|HMP-PP-phosphatase
MARLAAFDMDGTLLMPDHQLGETTQRALHRLHQRGVTMAFATGRHLLEMRQMLQKIALEAFLITGNGTRIHAPSGELLFAEDLSPQVAEAVLHGHWDTPASLHVFNDSGWLTDNDDPALLDAHAWSGFRYQLTDLKRLPAHQVTKICFVADHDTLRELRVKLSQALGSQAHICFSALDCLEVLPPGCNKGAALQALSQHLGITMADCMAFGDAMNDREMLSLAGKGLIMGNAMPQLLAELPHLPVIGHCSRQAVAHYLTHWLDHPHLDYSPE
>NC_023032.1|WP_032967976.1|3167864_3168302_+|hypothetical-protein
MLDKKIIYIAAMMMSLSACTTAPKNAPVKSNVSQTPVVPAQPAPTPVESMNQLAPVSSDTKLRLERCLAETKHLSDINREKYREQIDTLYRSIKATQYYASISNDLSNIMVETITPLYQFRVNDACNTISQSLLAELKKGAGLAK
>NC_023032.1|WP_007781408.1|3166423_3167470_+|PLP-dependent-cysteine-synthase-family-protein
MSSTWVHHAINEIHADARRSADTHLIRFTLPAFPGIWFYLKDESTHPTGSLKHRLARSLFLYGLSNGWIREGTPIIEASSGSTAVSEAWFARMLGLPFIAVMPACTARRKVEQIEFYGGRCHFVQSACEIYEASEVLARELRGRYMDQFTYAERATDWRGNNNIADSIFRQMAGEPHPVPDYIVMSAGTGGTSATIGRYLRYQGHETRLMVVDPENSVFYDYWQQRDSRLKSSVGSRIEGIGRPRVEPSFIPDVIDEMLKVPDAASVAAMQWLGELLGRKVGASTGTNMWGALQLAARMREEGRSGAIVTLLCDSGERYLETYHNPEWVAASIGDISPWRAAIQELMR
>NC_023032.1|WP_004387554.1|3165846_3166308_-|Lrp/AsnC-family-transcriptional-regulator
MLDKIDCRLLALLQEDATLSLQALADAVNLTTTPCWKRLRRLEDDGYIIKRVALLDPEKLGLGLTAFMLIKTQHHSSDWYSQFVAVVEEMPEVLGFWRMAGEYDYLMRVQVADMKSYDDFYKRLVNRVPGLSDVTSSFAMEQIKYTTALPLKR
>NC_023032.1|WP_023899237.1|3164013_3165789_-|SmdA-family-multidrug-ABC-transporter-permease/ATP-binding-protein
MRLFAQLSWYFSREWRRYLGAVALLIVIAILQLVPPKVVGYVVDGVTQHHYTTRQVLLWVGLLVVIAIVVYLLRYVWRVLLFGASYQLAVELRRDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLVIMCTQISWQLTLLALLPMPVMAIVIKRYGDQLHHRFKAAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFSEDARDTGVKNLRVARVDARFDPTIYIAIGMANLLAIGGGSWMVMNGTLTLGQLTSFTMYLGLMIWPMLALAWMFNIVERGSAAYSRIRALLAEAPVVKDGQASLPAGRGVLNVAIREFRYPHAARDTLRNVQFSLKPGQMLGLCGPTGAGKTSVLSLIQRHFDLDQGEITFHDVPLDRVHLDDWRGRLAVVNQTPFLFSDTVASNIALGKPDATQEEIEQAAKLACVHDDILRLPQGYDTQVGERGVMLSGGQKQRISIARAMLLEAEILVLDDALSAVDGRTEHQILHNLRQWGENRTVIISAHRLSALTEASEILVLQHGQVAQRGRHEALAAQPGWYRDMYRYQQLEAALDDAPEENDEEALNA
>NC_023032.1|WP_023899235.1|3162242_3164021_-|SmdB-family-multidrug-efflux-ABC-transporter-permease/ATP-binding-protein
MRNTVKSWPTLKRLLAYGSPWRKPLGGAVLMLWVAAAAEVTGPALISYFIDNLVAKNQLPLGLVAGLAFAYVLLQILAAGLHYWQALLFNQAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAITIFPAVLIVMMIYQRYSTPIVRRVRTYLADINDGFNEVISGMNVIQQFRQQTRFGERMNAASHSHYLARMQTLRLDGFLLRPLLSLFSALVLCGLLMLFGFTAVGTIQVGVLYAFISYLGRLNEPLIELTTQQSILQQALVAGERVFELMDRPRQDYGHDERPLTSGAIEVDNVSFAYRDDQLVLKDISLSVPSRHFVALVGHTGSGKSTLASLLMGYYPLTSGEIRLDGRPLASLSHGVLRKGVAMVQQDPVVLADSFFANVTLGRDIDEARVWEVLETVQLAELARGMSEGIHTRLGEQGNNLSVGQKQLLALARVLVDAPQILILDEATANIDSGTEQAIQHALAAIRPHTTLVVIAHRLSTIVEADTILVLHRGQAVERGSHQALLEARGRYWQMYQLQLAGEELQAAAKEEPLSA
>NC_023032.1|WP_004387552.1|3161672_3162011_-|P-II-family-nitrogen-regulator
MKLVTVVIKPFKLEDVREALSTIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVNFLPKVKIDVAIADDQLDEVIEVVSKAAWTGKIGDGKIFVAELQRVIRIRTGEADEAAL
>NC_023032.1|WP_007781383.1|3175541_3175940_-|YbgC/FadM-family-acyl-CoA-thioesterase
MQTQIKVRGYHMDVYQHVNNARYLEFLEEARWDGLENDESFKWMMANNIAFIVANININYRRPAVLGDLLTVTSHVKQLNGKSGVLSQVITLEPEGEVVADALITFVCIDLKTQKALPIEGELREKLEKITG
>NC_023032.1|WP_007781382.1|3176064_3176433_-|helix-hairpin-helix-domain-containing-protein
MKRGIKALCLAVALAGGTFCTAAIATPSAGKSQAEPVKEKPAAAAPQAKPETMAETPEETVSINTATADELAQAMNGVGKKKAQSIVSYREEYGPFKSIEDLKQVPGMGNSLVERNLSRIRL
>NC_023032.1|WP_023899242.1|3176579_3178457_-|peptidylprolyl-isomerase
MMDNLRAAANHVVLKIILGLIILSFVLTGVSNYLIGGNSNYAAKVNDQEISRAQLENAVNAERNNLERRLGDRFSELASNEQYMAELRQRALQGLIDEALIDQYARSLHLNISDEQVRQAIFKNPAFQSDGKFDNARYNAIITSMGMSADQYAQALRNQLTTDQLVSAVVGSDFILPGESDQFAALFAQQRQVRTATIAVDALAQKQQVSEQEIKDYYQQHTNNFLSPEQFRISYIKLDAAALAENASEEEIQAYYDKHQDEFGQPQRNRYSLIQTKTEDEAKAILTQLKQGADFATLAKEKSVDVITARNGGDMGWLEPGTTPDEFKNAGLKEKGQFSDVIKSSVGFLIVRLDDITPATVKPLSEVHNDISAKVKQEKALDAFFALQRKVSDAANNDNESLASAEKAAGVKAVETGWFSRDAVPEEINFKPVTDAVFGGNLLGENGTPGSNSDIITVDGDRAFVLRITDHKPQAEKPLAEVKDQVTALVKHQKALKAANEQAQNLLSTLKAGKGDEALKAAGIAFSPAKTFERTTQDTLTQPVFALPLPAKDKPSYGIGNDLQGNVVLLALDDVRSGTMPEDQKKAMAQRLTQNNAEIAFDALLKGLRKDAKIKLGDAGTSPQQ
>NC_023032.1|WP_007781367.1|3178671_3178944_-|DNA-binding-protein-HU-beta
MNKSQLIDKIAAGADISKAAAGRALDALIDSVTESLQAGDEVALVGFGTFSVRERAARTGRNPQTGKEITIAAAKVPGFRAGKALKDAVN
>NC_023032.1|WP_004387728.1|3179153_3181508_-|endopeptidase-La
MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDNDKKVMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARITTLSDNGDHFAAKAEYLESPAIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLSDKQSVLEMSDINERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMDDAPDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFNDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKENEINVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKRIEITGENLKDFLGVQRFDYGRADSENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINSDFYEKRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPDENKRDLEEIPENVIADLDIHPVKRIEEVLTLALQNAPYGMQVATAK
>NC_023032.1|WP_004387729.1|3181694_3182969_-|ATP-dependent-protease-ATP-binding-subunit-ClpX
MTDKRKDSSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRSHLDDYVIGQEKAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKGKSQKATEGELLSQVEPEDLIKFGLIPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVELEFRDEALEAIAKKAMSRKTGARGLRSIVEAALLETMYDLPSMEEVEKVVIDESVIAGQSEPLLIYGKPEAQQASGE
>NC_023032.1|WP_004387730.1|3183092_3183716_-|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MSYSDERDQFAPHMALVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDQMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIQPDVSTICMGQAASMGAFLLTAGTKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKARMNELMAQHTGQPLEQIERDTERDRFLSAGEAVEYGLVDSIMTHRN
>NC_023032.1|WP_004387731.1|3184016_3185315_-|trigger-factor
MQVSVETTQGLGRRVTITIAADSIENAVKSELVNVAKKVRIDGFRKGKVPMNVVAQRYGASVRQDVLGDLMSRHFVDAIIKEKINPAGAPNYVPGEYKLGEDFTYAVEFEVYPEVELKGLESIEVEKPVVEVTDADVDTMLDTLRKQQATWKDKDGAADAEDRVTIDFTGSVDGEEFEGGKATDFVLAMGQGRMIPGFEEGIKGHKAGEEFTIDVTFPEEYHAENLKGKAAKFVINLKKVEERELPELTEEFIKRFGVEDGSVAGLRAEVRKNMERELKGAVRNRIKSQAIEGLVNANNIDVPAALIDGEIDVLRRQAAQRFGGNEKQALELPRELFEEQAKRRVVVGLLLGEVIRTHELKADEDRVKALIEEMASAYEDPSEVIEFYSKNNELMDNMRNVALEEQAVEAVLAKAKVTEKPTSFNELMNQQA
>NC_023032.1|WP_004387733.1|3185665_3185983_-|transcriptional-regulator-BolA
MMIREQIEEKLKAAFEPVFLDVVDESYRHNVPAGSESHFKVVLVSDRFVGERFLNRHRLIYGILSEELASTVHALALHTYTLKEWEGLQDTVLPSPACRGAGTLA
>NC_023032.1|WP_004387734.1|3186281_3186860_+|lipoprotein
MLKKVLFPLVALFMLAGCATPPTTIEVSPKITLPQQDPSLMGVTVSINGADQRQDQALAKVTRDNQLVTLTASRDLRFLLQEVLEKQMTSRGYMIGPSGAVDLQIIVNQLYADVSQGNVRYNIATKADISIIATAKTGNKMTKNYRASYSVEGAFQASNKNIADAVNSVLSDTIADMAQDTSIHEFIKQNAR

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Crispr_ID: NC_023032_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023032_16

3461189-3461310

Orphan

Consensus_repeat	Method
AGTCAAACTCCAGTTCCACCTGCTCCGAACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_023032_16

>merge|NC_023032|16|3461189-3461310|CRISPRCasFinder
AGTCAAACTCCAGTTCCACCTGCTCCGAACCTGGCAGGCCACGCGGATTGAATCCAGCGATTCAGGGGCCTGGCACCTGATGCAACGCATCAGTCAAACTCCAGTTCCACCTGCTCTGAACC

>NC_023032|16|16|3461189-3461310|CRISPRCasFinder
AGTCAAACTCCAGTTCCACCTGCTCCGAACC	TGGCAGGCCACGCGGATTGAATCCAGCGATTCAGGGGCCTGGCACCTGATGCAACGCATC
AGTCAAACTCCAGTTCCACCTGCTCTGAACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_023032.1\|WP_007776547.1\|3468917_3469412_-\|molecular-chaperone-Skp	unknown	unknown	gnl\|CDD\|182724
NC_023032.1\|WP_023899385.1\|3455981_3458120_-\|lysine-decarboxylase-LdcC	unknown	unknown	gnl\|CDD\|185297
NC_023032.1\|WP_032967855.1\|3454165_3455470_-\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|182626
NC_023032.1\|WP_023899387.1\|3458269_3460051_-\|endochitinase	unknown	unknown	gnl\|CDD\|381595
NC_023032.1\|WP_007776986.1\|3453858_3454173_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|225418
NC_023032.1\|WP_004386121.1\|3460214_3461174_-\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	unknown	unknown	gnl\|CDD\|235580
NC_023032.1\|WP_004386127.1\|3467316_3467772_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
NC_023032.1\|WP_007776990.1\|3452611_3453157_-\|YaeQ-family-protein	unknown	unknown	gnl\|CDD\|377782
NC_023032.1\|WP_007776993.1\|3452192_3452615_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|181730
NC_023032.1\|WP_007776545.1\|3471979_3473332_-\|sigma-E-protease-regulator-RseP	unknown	unknown	gnl\|CDD\|182723
NC_023032.1\|WP_007697441.1\|3455534_3455924_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|183156
NC_023032.1\|WP_007776673.1\|3466524_3467313_-\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	unknown	unknown	gnl\|CDD\|235390
NC_023032.1\|WP_007776715.1\|3464789_3465386_-\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|234574
NC_023032.1\|WP_032976962.1\|3469534_3471949_-\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|236834
NC_023032.1\|WP_007776988.1\|3453550_3453811_+\|Rho-binding-antiterminator	unknown	unknown	gnl\|CDD\|183241
NC_023032.1\|WP_023899389.1\|3465382_3466525_-\|lipid-A-disaccharide-synthase	unknown	unknown	gnl\|CDD\|234580
NC_023032.1\|WP_004385445.1\|3453363_3453564_+\|YaeP-family-protein	unknown	unknown	gnl\|CDD\|179901
NC_023032.1\|WP_007790861.1\|3473343_3474201_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|183240
NC_023032.1\|WP_004386134.1\|3474213_3474972_-\|(2E,6E)-farnesyl-diphosphate-specific-ditrans,polycis-undecaprenyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|182326
NC_023032.1\|WP_023899390.1\|3467888_3468914_-\|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase	unknown	unknown	gnl\|CDD\|234858

Protein	Function_ID	Function_description	E-value
NC_023032.1\|WP_007776547.1\|3468917_3469412_-\|molecular-chaperone-Skp	gnl\|CDD\|182724	PRK10780, PRK10780, molecular chaperone Skp.	8.88425e-82
NC_023032.1\|WP_023899385.1\|3455981_3458120_-\|lysine-decarboxylase-LdcC	gnl\|CDD\|185297	PRK15399, PRK15399, lysine decarboxylase.	0
NC_023032.1\|WP_032967855.1\|3454165_3455470_-\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|182626	PRK10660, tilS, tRNA(Ile)-lysidine synthetase; Provisional.	0
NC_023032.1\|WP_023899387.1\|3458269_3460051_-\|endochitinase	gnl\|CDD\|381595	cd00325, chitinase_GH19, Glycoside hydrolase family 19, chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Glycoside hydrolase family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases, but they are smaller in size due to certain deletions. Despite lacking any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the prokaryotic/eukaryotic divergence.	6.99515e-71
NC_023032.1\|WP_007776986.1\|3453858_3454173_-\|cytochrome-c	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	2.77525e-29
NC_023032.1\|WP_004386121.1\|3460214_3461174_-\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
NC_023032.1\|WP_004386127.1\|3467316_3467772_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	2.84423e-93
NC_023032.1\|WP_007776990.1\|3452611_3453157_-\|YaeQ-family-protein	gnl\|CDD\|377782	pfam07152, YaeQ, YaeQ protein. This family consists of several hypothetical bacterial proteins of around 180 residues in length which are often known as YaeQ. YaeQ is homologous to RfaH, a specialized transcription elongation protein. YaeQ is known to compensate for loss of RfaH function.	4.99029e-96
NC_023032.1\|WP_007776993.1\|3452192_3452615_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|181730	PRK09256, PRK09256, aminoacyl-tRNA hydrolase.	2.51587e-70
NC_023032.1\|WP_007776545.1\|3471979_3473332_-\|sigma-E-protease-regulator-RseP	gnl\|CDD\|182723	PRK10779, PRK10779, sigma E protease regulator RseP.	0
NC_023032.1\|WP_007697441.1\|3455534_3455924_-\|VOC-family-protein	gnl\|CDD\|183156	PRK11478, PRK11478, VOC family protein.	1.04361e-95
NC_023032.1\|WP_007776673.1\|3466524_3467313_-\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	gnl\|CDD\|235390	PRK05289, PRK05289, acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase.	6.96503e-173
NC_023032.1\|WP_007776715.1\|3464789_3465386_-\|ribonuclease-HII	gnl\|CDD\|234574	PRK00015, rnhB, ribonuclease HII; Validated.	1.35815e-115
NC_023032.1\|WP_032976962.1\|3469534_3471949_-\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|236834	PRK11067, PRK11067, outer membrane protein assembly factor YaeT; Provisional.	0
NC_023032.1\|WP_007776988.1\|3453550_3453811_+\|Rho-binding-antiterminator	gnl\|CDD\|183241	PRK11625, PRK11625, Rho-binding antiterminator; Provisional.	1.32493e-54
NC_023032.1\|WP_023899389.1\|3465382_3466525_-\|lipid-A-disaccharide-synthase	gnl\|CDD\|234580	PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed.	0
NC_023032.1\|WP_004385445.1\|3453363_3453564_+\|YaeP-family-protein	gnl\|CDD\|179901	PRK04964, PRK04964, hypothetical protein; Provisional.	4.322e-34
NC_023032.1\|WP_007790861.1\|3473343_3474201_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|183240	PRK11624, cdsA, phosphatidate cytidylyltransferase.	0
NC_023032.1\|WP_004386134.1\|3474213_3474972_-\|(2E,6E)-farnesyl-diphosphate-specific-ditrans,polycis-undecaprenyl-diphosphate-synthase	gnl\|CDD\|182326	PRK10240, PRK10240, (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase.	6.29229e-169
NC_023032.1\|WP_023899390.1\|3467888_3468914_-\|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase	gnl\|CDD\|234858	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional.	0

>NC_023032.1|WP_004386121.1|3460214_3461174_-|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha
MSLNFLDFEQPIAELEAKIDSLTAVSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGAWQIAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIVGGIARLDGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMEMAERFNMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLKVPVICTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIAPRLKELKLIDSVIPEPLGGAHRNPEAMAQSLKTQLLADLADLDVLSKDDLLNRRYQRLMSYGYA
>NC_023032.1|WP_023899387.1|3458269_3460051_-|endochitinase
MEIAKIAAIGAAGVLAGAQALAAPLLSSSAPYTLNASDLTKKEQELTNFPLMQSVKNAIRTLDNAQVEQIAPGRAANPDNVKRVEKILSAQDWEYLFPLRAPEYTYNNFLKAVGKFPAVCGSYSDGRDADAICRKSLATMFAHFAQETGGHESWREQPEWRQALVYLREMGWTEGQKGGYNGECNPDTWQGQTWPCGKDKDGDYMSYFGRGAKQLSYNYNYGPFSDAMYGDVRPLLDKPEMVADTWLNLASAIFFFVYPQPPKPGMLHVIDGTWVPNEHDKESGLVPGFGVTIQIINGGVECGGDAENAQSLNRIAYYKEFAKYLKVPVPADEVLGCKKMKQFDAGGAGALPIYWEMDWSWSTTTPDGQAYACQLVGYQTPFSAFKEGDYAKCVQNHFNVNIVNDASGGTTPAPQPAPQPQPQPQPQPSPTPSANVAPVARISGPVGAVDAGSKVSLSATGSSDANGDALTYTWMAQTGQTLSGKDKSVVTFNVPESASDAQYTISLKVDDGKLSDTTSYILNVKAKAKTPDAGPVSYPSWTASQSWKPGDIVLNQGALYQCKPFPAGGWCSVAPAYYEPGAGLNWQDAWDAL
>NC_023032.1|WP_023899385.1|3455981_3458120_-|lysine-decarboxylase-LdcC
MNIIAIMGPHGVFYKDEPMKELQAALQQQGFQLIWPKNSNDLLKFIEHNPRICGVIFDWDEYSLDLCCEINQLNEYLPLYAFINTHSTLDVSANEMRMALWFFEYSLGIADDIATRIRQYTQEYLDNITPPFTKALFTYVKEGKYTFCTPGHMGGTAYQKSPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTNGTSTSNKIIGMYAAHAGSTVLIDRNCHKSLTHLLMMSDIVPLWLKPTRNALGILGGIPKREFTRESIAQKVAQTPDASWPVHAVITNSTYDGLLYNTNWIKQTLDVPSIHFDSAWVPYTHFHPIYKGKSGMSGERVPGKVFFETQSTHKMLAALSQASLIHIKGDYDEETFNEAYMMHTTTSPSYPLVASIETAAAMLRGNPGRRLINRSVERALHFRKEVQRLREESDSWFFDIWQPAEIGEADCWPITPGDDWHGFTHADRDHMYLDPVKVTILTPGMDAQGNMEKEGIPAALVAKFLDERGVVVEKTGPYNLLFLFSIGIDKTRAMGLLRGLTEFKRAYDLNLRVKNMLPDLWAEDPDFYRNMRVQELAQGIHKLIQQHDLPDLMLRAFDVLPEMKMTPHEMYQQQVKGNVETVEIEKLIGRVSANMILPYPPGVPLVMPGEMITEESRAVLDFLLMLCSIGRHYPGFETDIHGAKCGEDGVYRVRVLKSE
>NC_023032.1|WP_007697441.1|3455534_3455924_-|VOC-family-protein
MLGLKQIHHIAIIATDYHRSKAFYCDTLGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPARPSRPEACGLRHLAFSVDDVDRAVAFLESRGVTCEAVRVDPLTGKRFTFFNDPDGLPLELYQQ
>NC_023032.1|WP_032967855.1|3454165_3455470_-|tRNA-lysidine(34)-synthetase-TilS
MDTSLLSALRGRRQLLVAYSGGLDSTVLLHQLVRLREAHPELRLRAIHVHHGISPNADRWAAHCQALCYRWQVPFELAYVELAQDGLGLEAQARKARYQAFAAALLPGEALVTAQHLDDQCETLLLALKRGSGPAGLAAMPAELPFAGSVLLRPLLNTPRAQLEAWGSRHQLVWIDDESNQDDRFERNFLRLRILPALEARWPHFTEAAARSAQLCGEQEQLLDELLAPELAALMDGKTLAIAPLETMSALKRAALLRRWLAALNAPMPSRATLQRIWDEVAQSREDAAPRLKCGDYEARRYQGRLWWVRARQGQRQTVLAWPDPHVALPLPAALGWLQFGEAGDAVRPPHPGETVSVRFSASGMLYIVGRERGRTLKKLWQELQVPPWQREITPILFYDEQPICAPGLFITREGQAQNEPGWRLAWHKEHNDD
>NC_023032.1|WP_007776986.1|3453858_3454173_-|cytochrome-c
MIKHGMLLASLMALSVTAQAKGDAAAGEEKAVMCVACHGASGKASAPIYPNLGGQNEAYLEHALQAYKKGERSGGQAEIMKAYVSGLSDEDIANLAAYYAGQKP
>NC_023032.1|WP_007776988.1|3453550_3453811_+|Rho-binding-antiterminator
MSMNDAYQPINCDDYDNLELACQHHLLLTLELKSGEVMKAKAQDLVTRKNVEYLIADEAGAVREVRLDKIASFSHPQIGTVVVSES
>NC_023032.1|WP_004385445.1|3453363_3453564_+|YaeP-family-protein
MDKYCELIRQRYSQIASGELGYIPDALGCVLRALNEVASDEALSESVREQAAYAAANLLVSDYVNE
>NC_023032.1|WP_007776990.1|3452611_3453157_-|YaeQ-family-protein
MALKATIYKAAVNVADLDRQQFLDINLTLARHPSETQERMMLRLLAWMMYADERLQFTRGLCADDEPEIWLRNDHLGIDLWIELGLPEERRLKKAVSQSQQVALFTYNDRAAQIWWQQNQDKLRQYKNLTIWYINDEQLAQLSALAQRTMTLQATLQEGVIWLSGAEQNLELHPTVWQALA
>NC_023032.1|WP_007776993.1|3452192_3452615_-|aminoacyl-tRNA-hydrolase
MITFSRSVAVPDEEVTFSAIRAQGAGGQHVNKSSTAIHLRFDINASSLPDEWKARLLAASHHLITAEGVVIIKAQEYRSQEMNREAALARLVMLVRELTATQKRRKETRPTRASKVRRLEAKTHKSATKALRGKVRGMPD
>NC_023032.1|WP_007776715.1|3464789_3465386_-|ribonuclease-HII
MMEFIYPHTYLVAGVDEVGRGPLVGAVVTAAVILDPLKPIVGLADSKKLSEKRRLALFDEIKEKAIAWSLGRAEPHEIDELNILHATMLAMQRAVAGLAVTPEYVLIDGNRCPALPMPSMAVVKGDSRVAEISAASILAKVTRDAEMAELDLTFPQYGFAQHKGYPTAFHLERLAEHGATAHHRRSFAPVRRALGIAS
>NC_023032.1|WP_023899389.1|3465382_3466525_-|lipid-A-disaccharide-synthase
MTRPLTIALVAGETSGDILGAGLIRALKARVPNARFVGVAGPRMQAEGCEAWYEMEELAVMGIVEVLGRLRRLLHIRADLTERFTALKPDVFVGIDAPDFNITLEGNLKKQGIRTIHYVSPSVWAWRQKRVFKIGRATDLVLAFLPFEKAFYEKFNVPCRFIGHTMADAMPLDPDKNAARDVLGIAHDARCLALLPGSRSAEVEMLSADFLKTAQRLREHYPDLEIVVPLVNAKRREQFERIKAEVAPELTAHLLDGHAREAMIASDAALLASGTAALECMLAKCPMVVGYRMKPFTFWLAKRLVKTEFVSLPNLLAGRELVKELLQDDCEPQKLADALLPLLADGKQSHEMHDTFRKLHQQIRCNADEQAADAVLELAQ
>NC_023032.1|WP_007776673.1|3466524_3467313_-|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase
MIEKTAFIHPTAIVEEGAVIGANAHIGPFCIVGPDVKIGEGTVLKSHVVVNGHTTIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTAQGGGLTKVGSDNLLMINAHVAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSKEALHAIRNAYKLLYRSGKTLDEVKPEIAEIAAKHPEVQPFYDFFARSTRGLIR
>NC_023032.1|WP_004386127.1|3467316_3467772_-|3-hydroxyacyl-ACP-dehydratase-FabZ
MTTETHTLHIEEILELLPHRYPFLLVDRVLDFEEGRFLRAVKNVSVNEPFFQGHFPGKPIFPGVLILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFKRPVVPGDQMVMEVTFEKTRRGVTRFKGVALVDGKVVCEATMMCARSREA
>NC_023032.1|WP_023899390.1|3467888_3468914_-|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase
MPSIRLADLAQQLDAELHGDGDIAITGVASMQSAQEGQITFMVNPRYREQLAHCQASAVVMTEADLPFANSAALVVKNPYLTYARMAQILDTTPQPASSIAPSAVIDASARLGNNVAVGANAVIESGVELGDNVVIGPGCFVGKNSKLGAGTRLWANVSIYHDIQIGENCLIQSSTVIGADGFGYANDRGNWVKIPQLGCVIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAALVMNIDEMNKRLKAVERKVTQQD
>NC_023032.1|WP_007776547.1|3468917_3469412_-|molecular-chaperone-Skp
MKKWLFAAGLGLAMAASAQAADKIAVVNMGNLFQQVAQSTGVSKTLENEFKGRAGELQRMETDLQAKMQRLQRDGSTMKASERSKLEKDVMAGRQEFSSKAQQFEQDRARRSNEERGKLVTRIQSAVKKVAADQDIDLVVDANTVAYTSSDVKDITADVLKQVK
>NC_023032.1|WP_032976962.1|3469534_3471949_-|outer-membrane-protein-assembly-factor-BamA
MAMKKLLIASLLFSSATVYGADGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFASGNFEDVRVLRDGDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTLSDIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAKIQQINIVGNRAFSTEELISNFQLRDEVPWWNVVGDRKYQKQKLQGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTINVTEGDQYKIAGVEVSGNLAGHSAEIESLTKMQPGELYNGTKVTRMEDDIKKLLGRYGYAYPRVQTQPEINDADKTVKLHVNVDSGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGYFETVDVDTQRVSGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQVGVQQDNWLGTGYSVGINGTKNDYQTYSEFSVTNPYFTVDGVSLGGRIFYNDFKADDADLSSYTNKSYGVDGTLGFPVNEYNTLRLGLGYVHNDLSNMEPQVAMWRYLDSLGQSAKTTSDDNGFSADDFTLNYGWTYNHLDRGFFPTSGSRVNLNGKVTIPGSDNEFYKLTLDTATYVPIDEDHKWVVLGRTRWGYGDGLSGKEMPFYENFYAGGSSTVRGFQSNNIGPKAVYYSGPGLDNCDKAAGGYCSSDDAVGGNAMGVASLEFITPTPFLSEKYANSVRTSLFADAGTVWDTNWENTAAMRAAGVPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNIGKTW
>NC_023032.1|WP_007776545.1|3471979_3473332_-|sigma-E-protease-regulator-RseP
MLSILWNLAAFIIALGVLITVHEFGHFWVARKVGVRVERFSVGFGKALWRRTDRHGTEYVIALIPLGGYVKMLDERVEPVAPELRHEAFNNKTVAQRAAIIAAGPVANFLFAIFAYWLVFMMGVPGLKPVIGEITPNSIAANAQIEPGTELKAVDGIETPDWDAVRLELVGHIGDKNVTLSIASPGDTATMDKVLDLRQWQFEPDKEDPVASLGIRPFGPKIEPVLAQVQPKSAASKAGLQAGDRIVKVDGQPLSEWSAFVTMVRDNPARPLAIEIERQGSPLSLTLIPDTKPGNEKAEGFAGVVPKIAPLPDEYKTVRQYGPFNAIAEATEKTWQLMKLTVNMLGKLLTGDVKLNNLSGPISIAQGAGMSAEFGLIYYLMFLALISVNLGIINLFPLPVLDGGHLLFLAIEKLKGGPVSERVQDFSYRIGSILLVLLMGLALFNDFSRL
>NC_023032.1|WP_007790861.1|3473343_3474201_-|phosphatidate-cytidylyltransferase
MLKYRLISAFVLIPVVIAALFLLPPMGFAIATLVVCVLAAWEWGQLSGFTSRSQRVWLALLCGLLLALMLFFLPIYQAPISVPLVEGALWASLGWWAVALLLVLFYPNSAAFWRHSKALRLVFGLLTIVPFFWGMVALRAWHYDANHYSGALWLLYVMFLVWGADSGAYMFGKMFGKHKLAPKVSPGKTWQGFIGGLVTAAIISWIYGAWADLNVAPATLLTCSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFACLLLLVFRTI
>NC_023032.1|WP_004386134.1|3474213_3474972_-|(2E,6E)-farnesyl-diphosphate-specific-ditrans,polycis-undecaprenyl-diphosphate-synthase
MLSVNLPLSENLPAHGARHVAIIMDGNGRWAKRQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRVIGDISRFNTRLQDRIHKAEALTSQNTGLTLNIAANYGGRWDIIQGVQQLAAQVQEGLLRPDQIDEEMLSKQICMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFGGTAPGGIDA

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Crispr_ID: NC_023032_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023032_17

3788377-3788471

Orphan

Consensus_repeat	Method
ACGGTGGGTGCGCTTCGCTTACCCACCCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_023032_17

>merge|NC_023032|17|3788377-3788471|CRISPRCasFinder
ACGGTGGGTGCGCTTCGCTTACCCACCCTACCAAACACCGTCAGGTATGCTGGCGATACGGTAAACGGTGGGTGCGCTTTGCTTACCCACCCTAC

>NC_023032|17|17|3788377-3788471|CRISPRCasFinder
ACGGTGGGTGCGCTTCGCTTACCCACCCTAC	CAAACACCGTCAGGTATGCTGGCGATACGGTAA
ACGGTGGGTGCGCTTTGCTTACCCACCCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_023032.1\|WP_007780852.1\|3780242_3781907_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274090
NC_023032.1\|WP_007780638.1\|3793956_3794763_-\|hypothetical-protein	unknown	unknown	unknown
NC_023032.1\|WP_007780862.1\|3776847_3777300_-\|lysozyme	unknown	unknown	gnl\|CDD\|381599
NC_023032.1\|WP_023899518.1\|3785471_3786584_-\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
NC_023032.1\|WP_023899522.1\|3794807_3795572_-\|tRNA-(ms[2]io[6]A)-hydroxylase	unknown	unknown	gnl\|CDD\|114868
NC_023032.1\|WP_007798551.1\|3795619_3796039_-\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
NC_023032.1\|WP_041461185.1\|3782167_3783811_-\|dihydroxyacetone-kinase-subunit-DhaK	unknown	unknown	gnl\|CDD\|274097
NC_023032.1\|WP_007780857.1\|3778052_3778715_-\|DUF2589-domain-containing-protein	unknown	unknown	gnl\|CDD\|371654
NC_023032.1\|WP_007780628.1\|3796202_3797207_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
NC_023032.1\|WP_007780625.1\|3797438_3797891_-\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|225345
NC_023032.1\|WP_023899519.1\|3789035_3791891_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NC_023032.1\|WP_032981092.1\|3793406_3793910_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_023032.1\|WP_007780855.1\|3778966_3779986_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
NC_023032.1\|WP_032983607.1\|3798562_3799783_+\|arginine-deiminase	unknown	unknown	gnl\|CDD\|234949
NC_023032.1\|WP_014729699.1\|3788571_3789033_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NC_023032.1\|WP_023899520.1\|3792009_3793212_-\|DUF898-family-protein	unknown	unknown	gnl\|CDD\|226719
NC_023032.1\|WP_007780838.1\|3786853_3788365_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NC_023032.1\|WP_007780847.1\|3783871_3784339_-\|hypothetical-protein	unknown	unknown	unknown
NC_023032.1\|WP_007798588.1\|3777292_3778003_-\|DUF2589-domain-containing-protein	unknown	unknown	gnl\|CDD\|371654
NC_023032.1\|WP_023899517.1\|3784402_3785485_-\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900

Protein	Function_ID	Function_description	E-value
NC_023032.1\|WP_007780852.1\|3780242_3781907_-\|hypothetical-protein	gnl\|CDD\|274090	TIGR02349, Chaperone_protein_DnaJ, chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.	9.99585e-10
NC_023032.1\|WP_007780862.1\|3776847_3777300_-\|lysozyme	gnl\|CDD\|381599	cd00737, lyz_endolysin_autolysin, endolysin and autolysin. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.	7.46434e-76
NC_023032.1\|WP_023899518.1\|3785471_3786584_-\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
NC_023032.1\|WP_023899522.1\|3794807_3795572_-\|tRNA-(ms[2]io[6]A)-hydroxylase	gnl\|CDD\|114868	pfam06175, MiaE, tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE). This family consists of several bacterial tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.	4.2486e-98
NC_023032.1\|WP_007798551.1\|3795619_3796039_-\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	4.95382e-66
NC_023032.1\|WP_041461185.1\|3782167_3783811_-\|dihydroxyacetone-kinase-subunit-DhaK	gnl\|CDD\|274097	TIGR02361, Dihydroxyacetone_kinase_1, dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses ().	0
NC_023032.1\|WP_007780857.1\|3778052_3778715_-\|DUF2589-domain-containing-protein	gnl\|CDD\|371654	pfam11655, DUF2589, Protein of unknown function (DUF2589). This family of proteins has no known function.	3.84775e-42
NC_023032.1\|WP_007780628.1\|3796202_3797207_+\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
NC_023032.1\|WP_007780625.1\|3797438_3797891_-\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	3.30801e-62
NC_023032.1\|WP_023899519.1\|3789035_3791891_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NC_023032.1\|WP_032981092.1\|3793406_3793910_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.25242e-19
NC_023032.1\|WP_007780855.1\|3778966_3779986_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	3.48798e-168
NC_023032.1\|WP_032983607.1\|3798562_3799783_+\|arginine-deiminase	gnl\|CDD\|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	0
NC_023032.1\|WP_014729699.1\|3788571_3789033_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	1.26265e-64
NC_023032.1\|WP_023899520.1\|3792009_3793212_-\|DUF898-family-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	7.64217e-75
NC_023032.1\|WP_007780838.1\|3786853_3788365_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NC_023032.1\|WP_007798588.1\|3777292_3778003_-\|DUF2589-domain-containing-protein	gnl\|CDD\|371654	pfam11655, DUF2589, Protein of unknown function (DUF2589). This family of proteins has no known function.	5.6284e-20
NC_023032.1\|WP_023899517.1\|3784402_3785485_-\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0

>NC_023032.1|WP_007780838.1|3786853_3788365_+|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNTYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIASGIKAAKDLGNMPPNICNAAYLASQARQLADSFSKNVVTRVIGEQQMKELGMHSYLAVGEGSQNESLMSVIEYKGSSEPDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELNLPVNVTGILAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFDPEVVIDVATLTGACVIALGHHITGLMSNHNPLAHELISASEQAGDRAWRLPLADEFQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLSQFLLNRAGFNGEE
>NC_023032.1|WP_023899518.1|3785471_3786584_-|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPTNLVLSLLGLGVPEMAQLILPLSLFLALLMTLGRLYTESEITVMHACGLSKAVLVKAAMVLALLTGIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATDGNAVLFIESVDGSKFKDVFLAQLRPKGNARPSVVVADSGELSQRKDGSQVVTLNQGTRFEGTAMLRDFRITDFKDYKAIIGHQAVALDPDDAEQMDMKTLWQADSKSARAEFHWRLTLVFAVIVMALMVVPLSVVNPRQGRVLSMLPAMLLYLIFFLLQTSLRSNGAKGKLDPLIWMWAVNLLYLALAVALNLWDTVPVRRIRARFARRGVIDAGI
>NC_023032.1|WP_023899517.1|3784402_3785485_-|LPS-export-ABC-transporter-permease-LptG
MLGFSVLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLKKTGEGSYTALGAGTYTLLSVPKDIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVAASVMKTAIPLVIFTMAIGEWVAPQGEQMARNLRAQQMYGGSLLSTQQGMWAKDGDNFVYIERVKGENELGGISIYAFNDKRRLESVRYAASAKFDAEHKLWRLSQVDESNLKNPQQITGSQTLTGTWKTNLTPDKLGVVALDPDALSISGLRNYVKYLKASGQDASRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFIFYVLDQIFGPLSLVYGIPPIIGALLPSASFFLISLWLLMKRA
>NC_023032.1|WP_007780847.1|3783871_3784339_-|hypothetical-protein
MKRLASLLLLFFAHLAFVPEALILILIVGAYFYFRDPLPWLVFEGAVFSVLALLFALLARHVDRRSLAVGVVIAGSPQEKEADEVLRLFSLGEHLLFAIASATLPYFILSFFIFDGRVAFWLHTAFLAAVLVGVHYAGRWLDRLQKRRGYGEYGL
>NC_023032.1|WP_041461185.1|3782167_3783811_-|dihydroxyacetone-kinase-subunit-DhaK
MSRFFFDDRKRLINDAVDGLLLTARHQNLTRLDIDPAIRIVARRDWDKSKVAVISGGGSGHEPAHAGFVGKGMLTAAVCGDLFASPSVDAVLNAIVAVTGDRGCLLIVKNYTGDRLNFGLAAEKAKRHGLKVEMVIVSDDVALPDNKHPRGIAGTALVHKIAGFAAEQGKSLSDVRALAQQASDAVKSLGVALQTCSLPGSTEDGRIKQGEAELGLGIHGEPGASTISTQNSREIVATLVERLTPQVPADARLAVLINNLGGTSALEMALLTRELSRSALKDRIDWLIGPAPLVSALDMKGFSLSLLPLNDIFTEALNAPVETVGWLSPVAFGEPHAQSLPLVRDSVEAAPSDNPRVRTLLDRATASLIAQEAHLNALDAKVGDGDTGSTFAEGARDIAKKLANNQLPLNDAAALLQLIGERLATVMGGSSGVLMSIFFTAAGQKVAEGAALPDALLAGLAQMKHYGGAAPGDRTLIDALQPALEALRDKGLSAAAQAAEQGAKATAQMGKARAGRSSYVGSDNLEGVEDPGAVAVAGVFKAITQGE
>NC_023032.1|WP_007780852.1|3780242_3781907_-|hypothetical-protein
MKDAWLAACDTTIQNFVRDSTRLEPGELSVVPVDYIDFYYQISLRLIFNVRTDTATQAGRVSAGLNTDVCHSRAEYERALQAQTSAILARDKTLDDARASLLSRPYGDWKSEEVVYLHPMQVCLTENCNNCHGSGSVNCGQCHGSGKTSCCSCGGSGQVLRHRSYYDHYSKQNRTESYYESCSSCYGGRVTCNGCGGSGNKQCSPCSGTGIISHITSLKATATPDYQLVYPQADVPEYIREGLYKAGVPSLGSYGPVALTYNDVDYARRDVHVLYDANVPFGRMESPLPEAGEEPIRWILYGVTPHILDAGHVLQALLKNDLDMLVRQATPGKRRNPRVGAASRRTVQTFMESEAHQAMLIEHSRGKRGDALREALNRAFATPYLNEAIESLGGLVSAVQRWSLAKWSVFTALMMYLLLPVVTTWQRQGMMNFDTGRIYLTVPGHINGVWNVEAGLRGIAMVHGIPMLCIALVGTLVGYLWRSHWLNRQFGKPLTAWGKQQGRLRSRWLLGAVLSMVIATALLLVAPVWISQDEMLYGVVPVHEVIQKVVALRQ
>NC_023032.1|WP_007780855.1|3778966_3779986_+|NAD(P)-dependent-alcohol-dehydrogenase
MTIIKSYAAHEAGAELELYEYDAGELKPEDVEVEVEYCGICHSDLSMIDNEWGISAYPLIAGHEVIGRVSSLGSSAQNKGLKVGQRVGIGWTASSCEHCDACISGNQVNCQHGSVPTILNRGGFADKIRANWQWVIPMPEGIDAASAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLRAMGCEVTAFSSNPSKEQEILAMGADKVVNSRDPQALEALAGQFDLIINTVNVSLDWMPYFQALAWGGNFHTVGAVMKPFEVPAFSLIMGDRSVTGSATGSPHELRSLMKLAARAKVTPQTEEFPMSRINEALQHVRDGKARYRVVLKADF
>NC_023032.1|WP_007780857.1|3778052_3778715_-|DUF2589-domain-containing-protein
MDSQFIGSVINALPLEHMIGGPLQAMIKAQVQASKAYADFLLSVCIKDGKAEAVQFDYDETVVDEKGVIQGVVKKTMRIPLLAAISHPNISIEEGTIDFELEVSQSESSNSETEAEASLEASVGWGPFSVKISGRVSHKAQQTRSTDTRAKYSIHTQVKRQPPPEALMRVIDFLTDAATRPAILPSEAKKLDDKTLDAYPVTPAAPANANAGGTGAANPR
>NC_023032.1|WP_007798588.1|3777292_3778003_-|DUF2589-domain-containing-protein
MSLKDWIRGNREAGAGRSQTPLNAASTQGTAAVDPPDATAQDSAVAPEITPPDHVPPGPPPGGGTPPPSGPSPRGMPITLADITRGMQHAATSANQLIAHQYMQALDPFFEHSDDGRLVPKVIEMQLDDNHHFKLPLVALSTPRGLMLEKMKVFLTVRTDAVEQQSAAAGVSDDAVGRFHVSMSPQSRDKNGRDSDHVDIEMQFTVLEPPESVMRLIEEYTNQVLPKPTDRSNDNG
>NC_023032.1|WP_007780862.1|3776847_3777300_-|lysozyme
MANIPTNTGVPGVELIKSFEGLRLDKYQDAIGKWTIGYGHLILPNENFPRPLTLQEAEDLLRADLGMTERGIRQMVKVDLNQNQFDALVSFAFNVGLGNLQSSTLLRLLNQGSYREAADQFLRWNKAGGNVLAGLTRRREAERLLFLTAL
>NC_023032.1|WP_014729699.1|3788571_3789033_+|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDDTADGLSAVEQLVCDVAAARWRAGKRILIACVDEAQATRIDEALWKRDPDSFVPHNLAGEGPRGGAPVEIAWPQKRGSSPRELLISLLPEFAAFATAFYEVVDFVPYDESQKQLARERYKAYRAAGFHLTTATFTAPGTTQ
>NC_023032.1|WP_023899519.1|3789035_3791891_+|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEQQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGRDAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVVLPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGRRHQLPMINILTFDGDIRESAEVYDTKGNESDVYSNEIPAQFQKMERFAARKAIVAAVDELGLLEEIKPHDLTVPYGDRSGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDAEGNVYVGRSEEEVRQENNLSADVALRQDDDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFKTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGITLEELLEKRTGNMMQPQLAEKIRKRTEKQFPEGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEDQDCGFNGGEKVLSLADRWILAEFNQTVKAYREALDNFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGSEAELRGTRNTLVTVLEGLLRLAHPIIPFITETIWQRVKVIAGIDADTIMLQPFPAFDASRVDDAALADTEWLKQAIVAVRNIRAEMNIAPGKPLALLLRGCSQDAQRRVNDNRGFLQTLARLESITVLPADDKGPVSVTKIIDGAELLIPMAGLIDKDAELARLAKEVAKIEGEIGRIESKLGNEGFVARAPEAVIAKEREKLAGYHEAKAKLIEQQGVISAL
>NC_023032.1|WP_023899520.1|3792009_3793212_-|DUF898-family-protein
MSDDNKFLAGNKTHAFSFQGSGGGYFPVWLVNILLTVFTAGLFLPWAMVRARRYFYENTELAGARFSYHATGGAIFVGWICLALLYVVFVINAVYENTFLTLCMVLLFIAFAPFLIMQGLRYQLLMTKLNGLRFSFKASPLRAWWVMLGCPLLIAILVTVVMGLVFTIAGSSQSMTGIFVGIALSVLVGLIGTALMQGIYAAQWYGLLVNNLQYGKHRFAINLNVKTCTFIYLKAMLLFVPFITVALIMLAPLMTQIMHYSVYGMNSQEEMLSFLISLIMSVLLPYFIYMVGILVCFSFAFVKMRNYAYQQMSLEGGITFRSTASVGSFVWIILSNFMVCGITFGLAWPWAKVRLTRYLLENTHVEGELDNLALVDHDEQPRNDPASVLGRGFSILPFAL
>NC_023032.1|WP_032981092.1|3793406_3793910_+|GNAT-family-N-acetyltransferase
MNVEAPVDIIMRRMTAADNAAVARVIRQVSAEYGLTADKGYTVADPNLDVLYTQYSKPGHAYWVIELDGEVVGGGGIAPLACSETDICELQKMYFLPVARGRGLAKKLALQAMDFARSQGYRRCYLETTAFLKEAIALYERLGFAHISEPLGCTGHVDCEVRMLKTL
>NC_023032.1|WP_007780638.1|3793956_3794763_-|hypothetical-protein
MNWNHVMLSALVGIVLAVVASALYKKGKVNKLAAVAIFVVGIVLWNIADIAWLRSANTSPEQGFDEVFNSMPLYKLIKEKDPAFYARLRGQALEMAKQGKTQQDIIDAMQANMAELEMQRIQFAPDEDVIAYMRVNMEQTREMQQHSDDACFRFLMPQVKGGVNPVQMLSKDVIAKRMDVETKLLSASYGQNAHKVTPQEQKMAEETLAPIGQSLAAKYGDTIEVFTDPQKGVGQEKQVCNMVQDLWHDVLALPPEKAGPVIRISMQQ
>NC_023032.1|WP_023899522.1|3794807_3795572_-|tRNA-(ms[2]io[6]A)-hydroxylase
MNYDALLLPVKNFLHCATPQAWIDEARAPENLPLLLTDHMICELKAAQTAMLLIRRYVADKSGSDELLGWLQPYEDFTYREGPEPDFLALHKRIGKSVMPHTDDPWGQTLIDSMVLLIKEELHHFWQVREMMQARNIPYVKITASRYARGMRREMRTYEPATLVDKLICGAYIEARSCERFAALAPYLDDDLQKFYLSLLRSEARHYQDYLSLAQQISPENIAPRVQALGEAEARLINQPDTEFRFHSGIPVRA
>NC_023032.1|WP_007798551.1|3795619_3796039_-|ribonuclease-E-inhibitor-RraB
MANPELLEEQREETRLIIEELLEDGSDPDALYTIEHHFSADDFDTLEKLAVEVFKLGYEVTDPEELELEEGGETVICCDALSECALNAELIDAQVEQLMNLAEKFNVEYDGWGTYFEDPDGEEDEDDEGMDEDDDGVRH
>NC_023032.1|WP_007780628.1|3796202_3797207_+|ornithine-carbamoyltransferase
MSALYQKSFLKLLDFTPAQIRLLLELSAKLKSDKKNGVEVQKLAGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGFGQEIVETLAQYAGVPVWNGLTDEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALMGLDLRLVAPQSCWPAAELVAECQAMAKETGGRITLTEDIAAGVKGADFIYTDVWVSMGEAKEKWAERIALLRPYQVNSQMLALTGNPNVKFLHCLPAFHDDQTTLGKQMAQEYGLKGGMEVTDEVFESSHSIVFDQAENRMHTIKAVMVATLSE
>NC_023032.1|WP_007780625.1|3797438_3797891_-|YhcH/YjgK/YiaL-family-protein
MIIGNIHALGEWLPAPFREAIEQVKQQITPQTAPGKYELDGNRLFFLLSQDMTEPLSDRRAEYHARYLDIQIVLAGREGMTFSTLPPGVPDTDWLADKDIAFLPEGAQEKTVVLEEGDFVIFWPGEVHKPLCAVGDPAPVRKVVVKMLMA
>NC_023032.1|WP_032983607.1|3798562_3799783_+|arginine-deiminase
MEKHYVGSEIGQLRSVMLHRPNLSLKRLTPSNCQELLFDDVLSVERAGEEHDIFARTLRDQGVEVLLLTDLLTRTLDIPEAKDWLLETQVSEYRLGPSFAADVRGWLAGLPHRELARRLSGGLTFSEIPASIHNMVVDTHGANDFIMEPLPNHLFTRDTSCWIYNGVSINPMAKPARQRETNNLRAIYRWHPAFSDGEFIKYFGDQNINYDHATLEGGDVLVIGRGAVLIGMSERTTPQGVEFLASALFKHQQATRVIAVELPKHRSCMHLDTVMTHIDIDTFSVYPEVVRPDVKCWTLTPDGRGGIARTEEKTLVYALEQALGIDQIRLITTGGDAFEAEREQWNDANNVLTVRPGVVIGYERNTWTNEKYDKAGITVLPIPGDELGRGRGGARCMSCPLERDGI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_023032_14	14.11\|3148763\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148763-3148794	32	NZ_CP023822	Escherichia coli strain 7/2 plasmid p7_2.2, complete sequence	29067-29098	0	1.0
NC_023032_14	14.8\|3148580\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148580-3148611	32	HQ201308	Cronobacter phage ENT47670, complete genome	13118-13149	1	0.969
NC_023032_15	15.5\|3174719\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3174719-3174750	32	NZ_CP023822	Escherichia coli strain 7/2 plasmid p7_2.2, complete sequence	36222-36253	1	0.969
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	LN881736	Escherichia phage slur14, complete genome	95298-95325	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	MT682713	Escherichia phage vB_EcoM_Ozark, complete genome	154458-154485	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	MK373781	Escherichia phage vB_EcoM_KAW1E185, complete genome	151796-151823	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	MT682714	Escherichia phage vB_EcoM_Lutter, complete genome	155794-155821	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	MH553563	Enterobacteria phage RB18, complete genome	152959-152986	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	MK962757	Shigella phage JK45, complete genome	158399-158426	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	MG775043	Citrobacter phage vB_CroM_CrRp10, complete genome	130131-130158	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	MK327933	Escherichia phage vB_EcoM_G2285, complete genome	154198-154225	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	KU867876	Escherichia phage vB_EcoM-UFV13, complete genome	151797-151824	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	KT184311	Enterobacteria phage GiZh, complete genome	36424-36451	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	MK373786	Escherichia phage vB_EcoM_R5505, complete genome	153756-153783	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	MK327943	Escherichia phage vB_EcoM_G53, complete genome	154956-154983	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	MT176424	Citrobacter phage PhiZZ6, complete genome	152733-152760	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	KT184312	Enterobacteria phage Kha5h, complete genome	10973-11000	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	MN895434	Escherichia phage teqhad, complete genome	159478-159505	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	MN895435	Escherichia phage teqhal, complete genome	53384-53411	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	MN850579	Escherichia phage mogra, complete genome	18531-18558	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	KT184309	Enterobacteria phage ATK47, complete genome	17254-17281	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	MK047718	Escherichia phage p000y, complete genome	105976-106003	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	KT184310	Enterobacteria phage ATK48, complete genome	115488-115515	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	NC_042129	Escherichia phage slur03, complete genome	17015-17042	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	MN895438	Escherichia phage teqdroes, complete genome	67887-67914	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	MT446387	UNVERIFIED: Escherichia virus TH09, complete genome	3146-3173	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	NC_041990	Escherichia phage ST0, complete genome	75542-75569	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	KX130865	Shigella phage SHSML-52-1, complete genome	48926-48953	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	MN850590	Escherichia phage moha, complete genome	124961-124988	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	LN881733	Escherichia phage slur08, complete genome	14262-14289	6	0.786
NC_023032_10	10.1\|1556978\|28\|NC_023032\|CRISPRCasFinder	1556978-1557005	28	NC_024124	Escherichia phage vB_EcoM_JS09, complete genome	15094-15121	6	0.786
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	13604-13635	6	0.812
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	MN693306	Marine virus AFVG_25M45, complete genome	27286-27317	6	0.812
NC_023032_14	14.8\|3148580\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148580-3148611	32	MN856087	Bacteriophage sp. isolate 245, complete genome	308-339	6	0.812
NC_023032_15	15.8\|3174902\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3174902-3174933	32	NC_008573	Shewanella sp. ANA-3 plasmid unnamed1, complete sequence	732-763	6	0.812
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	KT264794	Gokushovirus WZ-2015a isolate 46Fx8, complete genome	3811-3842	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	KP282675	Acidianus rod-shaped virus 2 strain ARV2, complete genome	28811-28842	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP011282	Enterococcus faecium strain E39 plasmid p1, complete sequence	144426-144457	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP025426	Enterococcus faecium strain SC4 plasmid p1, complete sequence	68874-68905	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	LT603679	Enterococcus faecium isolate Ef_DMG1500501 genome assembly, plasmid: 2	43362-43393	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP018832	Enterococcus faecium strain ISMMS_VRE_9 plasmid p1_ISMMS_VRE9, complete sequence	235659-235690	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP040369	Enterococcus faecium strain VB3240 plasmid unnamed1, complete sequence	165303-165334	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP020485	Enterococcus faecium strain CFSAN059070 plasmid unnamed1, complete sequence	185767-185798	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP013995	Enterococcus faecium strain 6E6 plasmid unnamed1, complete sequence	198563-198594	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP027518	Enterococcus faecium strain AUSMDU00004024 plasmid unnamed1, complete sequence	89672-89703	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP027498	Enterococcus faecium strain AUSMDU00004167 plasmid unnamed1, complete sequence	41915-41946	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP027507	Enterococcus faecium strain AUSMDU00004055 plasmid unnamed1, complete sequence	124513-124544	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP027502	Enterococcus faecium strain AUSMDU00004142 plasmid unnamed1, complete sequence	162434-162465	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_LR135288	Enterococcus faecium isolate E7199 plasmid 2	197530-197561	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP025756	Enterococcus faecium strain AALTL plasmid pEFA-99d7, complete sequence	118467-118498	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_LR135279	Enterococcus faecium isolate E6975 plasmid 2	138103-138134	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP019209	Enterococcus faecium strain 2014-VREF-41 plasmid p41-1, complete sequence	111534-111565	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP019989	Enterococcus faecium isolate 2014-VREF-63 plasmid p63-1, complete sequence	208860-208891	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP017798	Enterococcus faecium strain E243 plasmid unnamed1, complete sequence	163463-163494	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_LR135476	Enterococcus faecium isolate E8423 plasmid 2	91520-91551	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_LR135352	Enterococcus faecium isolate E8014 plasmid 2	89674-89705	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP017793	Enterococcus faecium strain E240 plasmid unnamed1, complete sequence	161779-161810	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP019993	Enterococcus faecium isolate 2014-VREF-268 plasmid p268-1, complete sequence	216935-216966	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP035655	Enterococcus faecium strain UAMSEF_08 plasmid unnamed1, complete sequence	138710-138741	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP023790	Enterococcus faecium strain Efaecium_ER04462.3A plasmid pER04462.3A.1, complete sequence	191054-191085	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP023800	Enterococcus faecium strain Efaecium_ER04526.5A plasmid pER04526.5A.1, complete sequence	194526-194557	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP035661	Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence	132341-132372	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP035667	Enterococcus faecium strain UAMSEF_20 plasmid unnamed1, complete sequence	132227-132258	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP035649	Enterococcus faecium strain UAMSEF_01 plasmid unnamed1, complete sequence	138711-138742	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP040237	Enterococcus faecium strain VB3025 plasmid unnamed1, complete sequence	206001-206032	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP023809	Enterococcus faecium strain Efaecium_ER04526.3A plasmid pER04562.3A.1, complete sequence	194539-194570	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP023805	Enterococcus faecium strain Efaecium_ER04619.3A isolate isolate plasmid pER04619.3A.1, complete sequence	193193-193224	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP018827	Enterococcus faecium strain ISMMS_VRE_12 plasmid p1_ISMMS_VRE12, complete sequence	235659-235690	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP012461	Enterococcus faecium strain ISMMS_VRE_7 plasmid ISMMS_VRE7_p1, complete sequence	437-468	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP023795	Enterococcus faecium strain Efaecium_ER04484.3A plasmid pER04484.3A.1, complete sequence	194539-194570	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP023781	Enterococcus faecium strain Efaecium_ER03933.3A isolate isolate plasmid pER93933.3A.1, complete sequence	191862-191893	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	MN693456	Marine virus AFVG_25M411, complete genome	35874-35905	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	64140-64171	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	217942-217973	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NC_012654	Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence	173169-173200	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP031095	Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence	208983-209014	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP028104	Fusobacterium varium ATCC 27725 plasmid pFvar_27725, complete sequence	18541-18572	7	0.781
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	AP014128	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C44-MedDCM-OCT-S32-C97, * SEQUENCING IN PROGRESS *	19247-19278	7	0.781
NC_023032_15	15.8\|3174902\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3174902-3174933	32	NZ_CP017256	Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence	53068-53099	7	0.781
NC_023032_15	15.8\|3174902\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3174902-3174933	32	MN693005	Marine virus AFVG_117M50, complete genome	29804-29835	7	0.781
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP032327	Azospirillum brasilense strain MTCC4035 plasmid p6, complete sequence	52733-52764	7	0.781
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP007798	Azospirillum brasilense strain Az39 plasmid AbAZ39_p5, complete sequence	154686-154717	7	0.781
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NC_010510	Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence	13525-13556	7	0.781
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	1264-1295	7	0.781
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	943834-943865	7	0.781
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP020399	Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence	318139-318170	7	0.781
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	709862-709893	7	0.781
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP022365	Azospirillum sp. TSH58 plasmid TSH58_p06, complete sequence	40339-40370	7	0.781
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP029987	Sphingomonas sp. FARSPH plasmid p02, complete sequence	31681-31712	7	0.781
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	637102-637133	7	0.781
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP032344	Azospirillum brasilense strain MTCC4038 plasmid p5, complete sequence	82582-82613	7	0.781
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP033323	Azospirillum brasilense strain Cd plasmid p5, complete sequence	62069-62100	7	0.781
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP033317	Azospirillum brasilense strain Sp 7 plasmid p5, complete sequence	6156-6187	7	0.781
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	173164-173195	7	0.781
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP012919	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p5, complete sequence	100858-100889	7	0.781
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP009572	Sphingomonas taxi strain ATCC 55669 plasmid STP1, complete sequence	71360-71391	7	0.781
NC_023032_14	14.1\|3148153\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148153-3148184	32	NZ_CP013915	Serratia fonticola strain GS2 plasmid pSF002, complete sequence	62951-62982	8	0.75
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	L31578	Butyrivibrio fibrisolvens plasmid pRJF2, complete sequence	1714-1745	8	0.75
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_LR215005	Mycoplasma conjunctivae strain NCTC10147 plasmid 9	65035-65066	8	0.75
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NC_021623	Borrelia hermsii strain HS1 plasmid lp174, complete sequence	35604-35635	8	0.75
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP014350	Borrelia hermsii HS1 isolate Browne Mountain plasmid megaplasmid, complete sequence	36891-36922	8	0.75
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP031260	Klebsiella quasipneumoniae strain L22 plasmid pL22-3, complete sequence	46555-46586	8	0.75
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP011788	Candidatus Baumannia cicadellinicola strain B-GSS plasmid, complete sequence	1420-1451	8	0.75
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP011788	Candidatus Baumannia cicadellinicola strain B-GSS plasmid, complete sequence	2899-2930	8	0.75
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	MN856005	Myoviridae sp. isolate 302, complete genome	19710-19741	8	0.75
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	MH622943	Myoviridae sp. isolate ctbc_4, complete genome	146062-146093	8	0.75
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	MN693145	Marine virus AFVG_25M56, complete genome	53722-53753	8	0.75
NC_023032_14	14.6\|3148458\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148458-3148489	32	MT711975	Streptomyces phage Alderaan, complete genome	22529-22560	8	0.75
NC_023032_14	14.11\|3148763\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148763-3148794	32	CP015514	Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence	833755-833786	8	0.75
NC_023032_15	15.2\|3174536\|32\|NC_023032\|CRISPRCasFinder,CRT	3174536-3174567	32	AJ972879	Yersinia phage phiR1-37 complete genome	109048-109079	8	0.75
NC_023032_15	15.2\|3174536\|32\|NC_023032\|CRISPRCasFinder,CRT	3174536-3174567	32	NC_016163	Yersinia phage phiR1-37, complete genome	109048-109079	8	0.75
NC_023032_15	15.3\|3174597\|32\|NC_023032\|CRISPRCasFinder,CRT	3174597-3174628	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1772327-1772358	8	0.75
NC_023032_15	15.3\|3174597\|32\|NC_023032\|CRISPRCasFinder,CRT	3174597-3174628	32	HQ332139	Prochlorococcus phage P-RSP2 genomic sequence	14254-14285	8	0.75
NC_023032_15	15.8\|3174902\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3174902-3174933	32	KJ183191	Podovirus Lau218 strain Abe, complete genome	3967-3998	8	0.75
NC_023032_15	15.8\|3174902\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3174902-3174933	32	KJ183193	Podovirus Lau218 strain TahiMoana, complete genome	4000-4031	8	0.75
NC_023032_15	15.8\|3174902\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3174902-3174933	32	KJ183192	Podovirus Lau218 strain KiloMoana, complete genome	4000-4031	8	0.75
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP029835	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence	206447-206478	8	0.75
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NC_013860	Azospirillum sp. B510 plasmid pAB510f, complete sequence	254226-254257	8	0.75
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	595-626	8	0.75
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP039644	Azospirillum sp. TSA2s plasmid p2, complete sequence	41587-41618	8	0.75
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP039640	Azospirillum sp. TSH100 plasmid p1, complete sequence	14932-14963	8	0.75
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NC_016588	Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence	206515-206546	8	0.75
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP018096	Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence	89435-89466	8	0.75
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP010410	Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence	487006-487037	8	0.75
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	1214658-1214689	8	0.75
NC_023032_15	15.13\|3175207\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175207-3175238	32	MN693671	Marine virus AFVG_250M196, complete genome	27693-27724	8	0.75
NC_023032_15	15.14\|3175268\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175268-3175299	32	NZ_CP010957	Sphingobium sp. YBL2 plasmid 3pYBL2-3, complete sequence	146730-146761	8	0.75
NC_023032_15	15.14\|3175268\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175268-3175299	32	NZ_CP011665	Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence	78830-78861	8	0.75
NC_023032_14	14.1\|3148153\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148153-3148184	32	NZ_CP010728	Phaeobacter inhibens strain P88 plasmid pP88_c, complete sequence	76000-76031	9	0.719
NC_023032_14	14.2\|3148214\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148214-3148245	32	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	1202437-1202468	9	0.719
NC_023032_14	14.2\|3148214\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148214-3148245	32	NZ_CP048426	Rhizobium daejeonense strain KACC 13094 plasmid unnamed3, complete sequence	196960-196991	9	0.719
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	GU943036	Uncultured phage MedDCM-OCT-S08-C495 genomic sequence	6286-6317	9	0.719
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP045196	Acinetobacter indicus strain TQ23 plasmid p23TQ-37k, complete sequence	24956-24987	9	0.719
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	CP008937	Candidatus Caedibacter acanthamoebae plasmid Plasmid_00001, complete sequence	46540-46571	9	0.719
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	CP008939	Candidatus Caedibacter acanthamoebae plasmid Plasmid_00003, complete sequence	169041-169072	9	0.719
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	839621-839652	9	0.719
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP014283	Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence	516105-516136	9	0.719
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP015180	Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB71, complete sequence	33792-33823	9	0.719
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP032614	Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence	205289-205320	9	0.719
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NC_020240	Bacillus thuringiensis serovar kurstaki str. HD73 plasmid pAW63, complete sequence	33873-33904	9	0.719
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	MN694645	Marine virus AFVG_250M761, complete genome	9200-9231	9	0.719
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	228551-228582	9	0.719
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP016845	Carnobacterium maltaromaticum strain TMW 2.1581 plasmid pL21581-1, complete sequence	40301-40332	9	0.719
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NC_018146	Zymomonas mobilis subsp. mobilis ATCC 29191 plasmid pZZ6.01, complete sequence	11317-11348	9	0.719
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	KP836355	Marinitoga camini virus 1, complete genome	4987-5018	9	0.719
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	MN694196	Marine virus AFVG_250M182, complete genome	24561-24592	9	0.719
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	MN693284	Marine virus AFVG_25M452, complete genome	20991-21022	9	0.719
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	MN693152	Marine virus AFVG_25M11, complete genome	9480-9511	9	0.719
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NC_047948	Staphylococcus phage phiSA_BS2, complete genome	21502-21533	9	0.719
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	MH078572	Staphylococcus phage phiSA_BS1, complete genome	120671-120702	9	0.719
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	MN693020	Marine virus AFVG_117M64, complete genome	9287-9318	9	0.719
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	AP014380	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S43-C70, * SEQUENCING IN PROGRESS *	19850-19881	9	0.719
NC_023032_14	14.7\|3148519\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148519-3148550	32	MK448647	Streptococcus satellite phage Javan759, complete genome	4139-4170	9	0.719
NC_023032_14	14.7\|3148519\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148519-3148550	32	MK448649	Streptococcus satellite phage Javan760, complete genome	13290-13321	9	0.719
NC_023032_15	15.1\|3174475\|32\|NC_023032\|CRISPRCasFinder,CRT	3174475-3174506	32	NZ_CP042264	Litoreibacter sp. LN3S51 plasmid unnamed3, complete sequence	12467-12498	9	0.719
NC_023032_15	15.2\|3174536\|32\|NC_023032\|CRISPRCasFinder,CRT	3174536-3174567	32	NC_009516	Psychrobacter sp. PRwf-1 plasmid pRWF101, complete sequence	3906-3937	9	0.719
NC_023032_15	15.4\|3174658\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3174658-3174689	32	NZ_CP024924	Sphingomonas sp. Cra20 plasmid unnamed, complete sequence	64156-64187	9	0.719
NC_023032_15	15.8\|3174902\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3174902-3174933	32	AP013456	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S23-C23	20775-20806	9	0.719
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP029359	Azospirillum sp. CFH 70021 plasmid unnamed4	159414-159445	9	0.719
NC_023032_15	15.10\|3175024\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3175024-3175055	32	NZ_CP049249	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence	502290-502321	9	0.719
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	AP014212	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C86-MedDCM-OCT-S32-C46, * SEQUENCING IN PROGRESS *	4839-4870	10	0.688
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	AP014213	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C86-MedDCM-OCT-S38-C287, * SEQUENCING IN PROGRESS *	118-149	10	0.688
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP020558	Paenibacillus larvae subsp. pulvifaciens strain SAG 10367 plasmid pPLP3, complete sequence	22909-22940	10	0.688
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	NZ_CP023672	Clostridium septicum strain DSM 7534 plasmid unnamed1, complete sequence	494-525	10	0.688
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	AP013395	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C85-MedDCM-OCT-S43-C18	21107-21138	10	0.688
NC_023032_14	14.3\|3148275\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148275-3148306	32	AP013647	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C72-MedDCM-OCT-S41-C96, * SEQUENCING IN PROGRESS *	26273-26304	10	0.688
NC_023032_14	14.8\|3148580\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148580-3148611	32	NZ_CP050098	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence	553239-553270	10	0.688
NC_023032_14	14.8\|3148580\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148580-3148611	32	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	510091-510122	10	0.688
NC_023032_14	14.8\|3148580\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148580-3148611	32	NZ_CP053440	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence	624603-624634	10	0.688
NC_023032_14	14.8\|3148580\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148580-3148611	32	NZ_CP018229	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence	487884-487915	10	0.688
NC_023032_14	14.8\|3148580\|32\|NC_023032\|PILER-CR,CRISPRCasFinder,CRT	3148580-3148611	32	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	981191-981222	10	0.688
NC_023032_15	15.8\|3174902\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3174902-3174933	32	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	163163-163194	10	0.688
NC_023032_15	15.8\|3174902\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3174902-3174933	32	NC_012654	Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence	80962-80993	10	0.688
NC_023032_15	15.8\|3174902\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3174902-3174933	32	NZ_CP031095	Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence	31166-31197	10	0.688
NC_023032_15	15.8\|3174902\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3174902-3174933	32	CP015514	Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence	265313-265344	10	0.688
NC_023032_15	15.8\|3174902\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3174902-3174933	32	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	76406-76437	11	0.656
NC_023032_15	15.8\|3174902\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3174902-3174933	32	NC_011247	Borrelia duttonii Ly plasmid pl165, complete sequence	114297-114328	11	0.656
NC_023032_15	15.8\|3174902\|32\|NC_023032\|CRISPRCasFinder,CRT,PILER-CR	3174902-3174933	32	NZ_LR134399	Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence	9498-9529	11	0.656

1. spacer 14.11|3148763|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023822 (Escherichia coli strain 7/2 plasmid p7_2.2, complete sequence) position: , mismatch: 0, identity: 1.0

tccttaatcaattgtaagttgatgaaaaaacg	CRISPR spacer
tccttaatcaattgtaagttgatgaaaaaacg	Protospacer
********************************

2. spacer 14.8|3148580|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to HQ201308 (Cronobacter phage ENT47670, complete genome) position: , mismatch: 1, identity: 0.969

cgcagcgcgataatgaacgttgcggcgattgg	CRISPR spacer
cgcagcgcgatcatgaacgttgcggcgattgg	Protospacer
*********** ********************

3. spacer 15.5|3174719|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023822 (Escherichia coli strain 7/2 plasmid p7_2.2, complete sequence) position: , mismatch: 1, identity: 0.969

tcaggaagaactggtaaggatatggagttaat	CRISPR spacer
tcaggaagatctggtaaggatatggagttaat	Protospacer
********* **********************

4. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to LN881736 (Escherichia phage slur14, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

5. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to MT682713 (Escherichia phage vB_EcoM_Ozark, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

6. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to MK373781 (Escherichia phage vB_EcoM_KAW1E185, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

7. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to MT682714 (Escherichia phage vB_EcoM_Lutter, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

8. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to MH553563 (Enterobacteria phage RB18, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

9. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to MK962757 (Shigella phage JK45, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gacttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

10. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to MG775043 (Citrobacter phage vB_CroM_CrRp10, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

11. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to MK327933 (Escherichia phage vB_EcoM_G2285, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

12. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to KU867876 (Escherichia phage vB_EcoM-UFV13, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

13. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to KT184311 (Enterobacteria phage GiZh, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

14. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to MK373786 (Escherichia phage vB_EcoM_R5505, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

15. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to MK327943 (Escherichia phage vB_EcoM_G53, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

16. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to MT176424 (Citrobacter phage PhiZZ6, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

17. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to KT184312 (Enterobacteria phage Kha5h, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

18. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to MN895434 (Escherichia phage teqhad, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

19. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to MN895435 (Escherichia phage teqhal, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

20. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to MN850579 (Escherichia phage mogra, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gacttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

21. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to KT184309 (Enterobacteria phage ATK47, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

22. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to MK047718 (Escherichia phage p000y, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gacttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

23. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to KT184310 (Enterobacteria phage ATK48, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

24. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to NC_042129 (Escherichia phage slur03, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

25. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to MN895438 (Escherichia phage teqdroes, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

26. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to MT446387 (UNVERIFIED: Escherichia virus TH09, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

27. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to NC_041990 (Escherichia phage ST0, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

28. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to KX130865 (Shigella phage SHSML-52-1, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

29. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to MN850590 (Escherichia phage moha, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gacttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

30. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to LN881733 (Escherichia phage slur08, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

31. spacer 10.1|1556978|28|NC_023032|CRISPRCasFinder matches to NC_024124 (Escherichia phage vB_EcoM_JS09, complete genome) position: , mismatch: 6, identity: 0.786

ttgttaaaaccaataccatttcccgaag	CRISPR spacer
gatttaaaaccaataccattccacgaaa	Protospacer
   *****************.* ****.

32. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

taaagcatttatttcatcaattatttttttat	CRISPR spacer
tctaaaatttaattcatcaattatttctttat	Protospacer
*  *. ***** **************.*****

33. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to MN693306 (Marine virus AFVG_25M45, complete genome) position: , mismatch: 6, identity: 0.812

taaagcatttatttcatcaattatttttttat	CRISPR spacer
taaagcatttatttcatctagtattctatctt	Protospacer
****************** * ****.* *. *

34. spacer 14.8|3148580|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to MN856087 (Bacteriophage sp. isolate 245, complete genome) position: , mismatch: 6, identity: 0.812

cgcagcgcgataatgaacgttgcggcgattgg	CRISPR spacer
cagaatgcaataattaacgttgcggcgattgg	Protospacer
*. *..**.***** *****************

35. spacer 15.8|3174902|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NC_008573 (Shewanella sp. ANA-3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
cattcccaaagtttttagtttttattttttcg	Protospacer
..*. *********** *********** ***

36. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to KT264794 (Gokushovirus WZ-2015a isolate 46Fx8, complete genome) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
tctttaatttttttcattaattatttttttat	Protospacer
*     **** ******.**************

37. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to KP282675 (Acidianus rod-shaped virus 2 strain ARV2, complete genome) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
agaaagatttggttcatcaattatttttttaa	Protospacer
 .**. ****. *******************

38. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011282 (Enterococcus faecium strain E39 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

39. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025426 (Enterococcus faecium strain SC4 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

40. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to LT603679 (Enterococcus faecium isolate Ef_DMG1500501 genome assembly, plasmid: 2) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

41. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018832 (Enterococcus faecium strain ISMMS_VRE_9 plasmid p1_ISMMS_VRE9, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

42. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040369 (Enterococcus faecium strain VB3240 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

43. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020485 (Enterococcus faecium strain CFSAN059070 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

44. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013995 (Enterococcus faecium strain 6E6 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

45. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027518 (Enterococcus faecium strain AUSMDU00004024 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

46. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027498 (Enterococcus faecium strain AUSMDU00004167 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

47. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027507 (Enterococcus faecium strain AUSMDU00004055 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

48. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027502 (Enterococcus faecium strain AUSMDU00004142 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

49. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135288 (Enterococcus faecium isolate E7199 plasmid 2) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

50. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025756 (Enterococcus faecium strain AALTL plasmid pEFA-99d7, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

51. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135279 (Enterococcus faecium isolate E6975 plasmid 2) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

52. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019209 (Enterococcus faecium strain 2014-VREF-41 plasmid p41-1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

53. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019989 (Enterococcus faecium isolate 2014-VREF-63 plasmid p63-1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

54. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017798 (Enterococcus faecium strain E243 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

55. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135476 (Enterococcus faecium isolate E8423 plasmid 2) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

56. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135352 (Enterococcus faecium isolate E8014 plasmid 2) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

57. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017793 (Enterococcus faecium strain E240 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

58. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019993 (Enterococcus faecium isolate 2014-VREF-268 plasmid p268-1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

59. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035655 (Enterococcus faecium strain UAMSEF_08 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

60. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023790 (Enterococcus faecium strain Efaecium_ER04462.3A plasmid pER04462.3A.1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

61. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023800 (Enterococcus faecium strain Efaecium_ER04526.5A plasmid pER04526.5A.1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

62. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035661 (Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

63. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035667 (Enterococcus faecium strain UAMSEF_20 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

64. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035649 (Enterococcus faecium strain UAMSEF_01 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

65. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040237 (Enterococcus faecium strain VB3025 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

66. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023809 (Enterococcus faecium strain Efaecium_ER04526.3A plasmid pER04562.3A.1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

67. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023805 (Enterococcus faecium strain Efaecium_ER04619.3A isolate isolate plasmid pER04619.3A.1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

68. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018827 (Enterococcus faecium strain ISMMS_VRE_12 plasmid p1_ISMMS_VRE12, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

69. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012461 (Enterococcus faecium strain ISMMS_VRE_7 plasmid ISMMS_VRE7_p1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

70. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023795 (Enterococcus faecium strain Efaecium_ER04484.3A plasmid pER04484.3A.1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

71. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023781 (Enterococcus faecium strain Efaecium_ER03933.3A isolate isolate plasmid pER93933.3A.1, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
catatgatttaattcatcaattaattttttgt	Protospacer
.* *  ***** *********** ******.*

72. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to MN693456 (Marine virus AFVG_25M411, complete genome) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
tacccaaattatttcatctattgtttttttat	Protospacer
**    * ********** ***.*********

73. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ttaagagaatatatcatctattatttttttat	Protospacer
* *** .  *** ***** *************

74. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ttaagagaatatatcatctattatttttttat	Protospacer
* *** .  *** ***** *************

75. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NC_012654 (Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ttaagagaatatatcatctattatttttttat	Protospacer
* *** .  *** ***** *************

76. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031095 (Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ttaagagaatatatcatctattatttttttat	Protospacer
* *** .  *** ***** *************

77. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028104 (Fusobacterium varium ATCC 27725 plasmid pFvar_27725, complete sequence) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
tatattttctatatcatcaattattttttgat	Protospacer
** * . *.*** **************** **

78. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to AP014128 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C44-MedDCM-OCT-S32-C97, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

taaagcatttatttcatcaattatttttttat	CRISPR spacer
taatatttttattttatccattatttttttgt	Protospacer
*** .. *******.*** ***********.*

79. spacer 15.8|3174902|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017256 (Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence) position: , mismatch: 7, identity: 0.781

----tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
ctaatg----caaagttttgtatttttattttgtct	Protospacer
    **    ********* *.*************

80. spacer 15.8|3174902|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to MN693005 (Marine virus AFVG_117M50, complete genome) position: , mismatch: 7, identity: 0.781

tgtcgccaaa--gttttttgtttttattttgtcg	CRISPR spacer
--ccaacaaaaggttttttgtttttattttgtgt	Protospacer
  .*. ****  ********************

81. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032327 (Azospirillum brasilense strain MTCC4035 plasmid p6, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccgtaggtgttgaagatgcgggca	Protospacer
 **** ******************   * **.

82. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007798 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p5, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccgtaggtgttgaagatgcggacg	Protospacer
 **** ******************   * .**

83. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NC_010510 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccgtaggtgttgaagatccgcacg	Protospacer
 **** ****************** . *..**

84. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcggcccgtaggtgttgaagatgcgggcg	Protospacer
 **** * ****************   * ***

85. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcggcccgtaggtgttgaagatgcgggcg	Protospacer
 **** * ****************   * ***

86. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcggcccgtaggtgttgaagatccgcgcg	Protospacer
 **** * **************** . *.***

87. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcggcccgtaggtgttgaagatgcgcgcg	Protospacer
 **** * ****************   *.***

88. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022365 (Azospirillum sp. TSH58 plasmid TSH58_p06, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg----	CRISPR spacer
tgcgcggcccgtaggtgttgaaga----tgcgcatc	Protospacer
 **** * ****************    ****

89. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029987 (Sphingomonas sp. FARSPH plasmid p02, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccataggtgttgaagatccgcgcg	Protospacer
 **** ****.************* . *.***

90. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccgtaagtgttgaagatgcgcgcg	Protospacer
 **** *******.**********   *.***

91. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032344 (Azospirillum brasilense strain MTCC4038 plasmid p5, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg----	CRISPR spacer
tgcgcggcccgtaggtgttgaaga----tgcgcatc	Protospacer
 **** * ****************    ****

92. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033323 (Azospirillum brasilense strain Cd plasmid p5, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg----	CRISPR spacer
tgcgcggcccgtaggtgttgaaga----tgcgcatc	Protospacer
 **** * ****************    ****

93. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033317 (Azospirillum brasilense strain Sp 7 plasmid p5, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg----	CRISPR spacer
tgcgcggcccgtaggtgttgaaga----tgcgcatc	Protospacer
 **** * ****************    ****

94. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcggcccgtaggtgttgaagatgcgcgcg	Protospacer
 **** * ****************   *.***

95. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012919 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p5, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg----	CRISPR spacer
tgcgcggcccgtaggtgttgaaga----tgcgcatc	Protospacer
 **** * ****************    ****

96. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009572 (Sphingomonas taxi strain ATCC 55669 plasmid STP1, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcggcccgtaggtgttgaagatccgcgcg	Protospacer
 **** * **************** . *.***

97. spacer 14.1|3148153|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013915 (Serratia fonticola strain GS2 plasmid pSF002, complete sequence) position: , mismatch: 8, identity: 0.75

ctgccacgcgtctgccgcagcgtattcggcgt	CRISPR spacer
tcgccatgcgtctgccgcagcgtattgtcact	Protospacer
..****.*******************     *

98. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to L31578 (Butyrivibrio fibrisolvens plasmid pRJF2, complete sequence) position: , mismatch: 8, identity: 0.75

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ttgttgttttaattcatcaattgtttttttat	Protospacer
* .    **** **********.*********

99. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215005 (Mycoplasma conjunctivae strain NCTC10147 plasmid 9) position: , mismatch: 8, identity: 0.75

taaagcatttatttcatcaattatttttttat	CRISPR spacer
aattgaatttatttcatcatttattttcttca	Protospacer
 *  * ************* *******.**

100. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NC_021623 (Borrelia hermsii strain HS1 plasmid lp174, complete sequence) position: , mismatch: 8, identity: 0.75

----taaagcatttatttcatcaattatttttttat	CRISPR spacer
atgtta----ttttatttcatctagtatttttttaa	Protospacer
    **     *********** * **********

101. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014350 (Borrelia hermsii HS1 isolate Browne Mountain plasmid megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

----taaagcatttatttcatcaattatttttttat	CRISPR spacer
atgtta----ttttatttcatctagtatttttttaa	Protospacer
    **     *********** * **********

102. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031260 (Klebsiella quasipneumoniae strain L22 plasmid pL22-3, complete sequence) position: , mismatch: 8, identity: 0.75

taaagcatttatttcatcaattatttttttat	CRISPR spacer
tatgtcttttatttcatcatgtatttttttga	Protospacer
** . * ************  *********.

103. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011788 (Candidatus Baumannia cicadellinicola strain B-GSS plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ataaaaatttatttcaacaaatattttttaaa	Protospacer
  **. ********** *** ******** *

104. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011788 (Candidatus Baumannia cicadellinicola strain B-GSS plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ataaaaatttatttcaacaaatattttttaaa	Protospacer
  **. ********** *** ******** *

105. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to MN856005 (Myoviridae sp. isolate 302, complete genome) position: , mismatch: 8, identity: 0.75

taaagcatttatttcatcaattatttttttat	CRISPR spacer
taaagaatttatttcatcagttactgattctg	Protospacer
***** *************.***.*  **.

106. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to MH622943 (Myoviridae sp. isolate ctbc_4, complete genome) position: , mismatch: 8, identity: 0.75

taaagcatttatttcatcaattatttttttat	CRISPR spacer
aataaccgttatttcatcatttattattttaa	Protospacer
 * *.*  *********** ***** *****

107. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to MN693145 (Marine virus AFVG_25M56, complete genome) position: , mismatch: 8, identity: 0.75

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ccactcttttattttatcaattacttttttgt	Protospacer
. *  * *******.********.******.*

108. spacer 14.6|3148458|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to MT711975 (Streptomyces phage Alderaan, complete genome) position: , mismatch: 8, identity: 0.75

ctgattttcggcatcccgtcgtacgcggtctg	CRISPR spacer
gccaccttcgccatcccgtcgtacgcgttcgg	Protospacer
 . *..**** **************** ** *

109. spacer 14.11|3148763|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tccttaatcaattgtaagttgatgaaaaaacg	CRISPR spacer
cacttaatcaattgttagttgatgaactccct	Protospacer
. ************* **********    *

110. spacer 15.2|3174536|32|NC_023032|CRISPRCasFinder,CRT matches to AJ972879 (Yersinia phage phiR1-37 complete genome) position: , mismatch: 8, identity: 0.75

taaatcccccatttatcaggaaatagatagtt	CRISPR spacer
caaataccccatttatcaagaaatacactagt	Protospacer
.**** ************.****** *. . *

111. spacer 15.2|3174536|32|NC_023032|CRISPRCasFinder,CRT matches to NC_016163 (Yersinia phage phiR1-37, complete genome) position: , mismatch: 8, identity: 0.75

taaatcccccatttatcaggaaatagatagtt	CRISPR spacer
caaataccccatttatcaagaaatacactagt	Protospacer
.**** ************.****** *. . *

112. spacer 15.3|3174597|32|NC_023032|CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 8, identity: 0.75

tctggtattccggcaggtcatacaggcccagc	CRISPR spacer
tgagctgggccggcaggtaatgcaggcccagc	Protospacer
*  * *.  ********* **.**********

113. spacer 15.3|3174597|32|NC_023032|CRISPRCasFinder,CRT matches to HQ332139 (Prochlorococcus phage P-RSP2 genomic sequence) position: , mismatch: 8, identity: 0.75

tctggtattccggcaggtcatacaggcccagc	CRISPR spacer
gatggtattccagcaggtcttacagcaacaga	Protospacer
  *********.******* *****   ***

114. spacer 15.8|3174902|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to KJ183191 (Podovirus Lau218 strain Abe, complete genome) position: , mismatch: 8, identity: 0.75

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
taccgccaaatttttttgttgttattgttttc	Protospacer
*..******* ********* ***** * *.

115. spacer 15.8|3174902|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to KJ183193 (Podovirus Lau218 strain TahiMoana, complete genome) position: , mismatch: 8, identity: 0.75

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
taccgccaaatttttttgttgttattgttttc	Protospacer
*..******* ********* ***** * *.

116. spacer 15.8|3174902|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to KJ183192 (Podovirus Lau218 strain KiloMoana, complete genome) position: , mismatch: 8, identity: 0.75

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
taccgccaaatttttttgttgttattgttttc	Protospacer
*..******* ********* ***** * *.

117. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029835 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccgtaggtgttgaagatgcggatg	Protospacer
 **** ******************   * ..*

118. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NC_013860 (Azospirillum sp. B510 plasmid pAB510f, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccgtaggtgttgaagatgcggatg	Protospacer
 **** ******************   * ..*

119. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccgtaggtgttgaagatgcggatg	Protospacer
 **** ******************   * ..*

120. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039644 (Azospirillum sp. TSA2s plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccgtaggtgttgaagatgcggatg	Protospacer
 **** ******************   * ..*

121. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039640 (Azospirillum sp. TSH100 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccgtaggtgttgaagatgcggatg	Protospacer
 **** ******************   * ..*

122. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccgtaggtgttgaagatgcggatg	Protospacer
 **** ******************   * ..*

123. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018096 (Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
ggcgcgggccgaaggtgttgaaggggcgcagg	Protospacer
***** ***** ***********.*  *.. *

124. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010410 (Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcggcccgtaggtgttgaagatgcgcccg	Protospacer
 **** * ****************   *. **

125. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcgggccgtaagtgttgaagatgcggacg	Protospacer
 **** *******.**********   * .**

126. spacer 15.13|3175207|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to MN693671 (Marine virus AFVG_250M196, complete genome) position: , mismatch: 8, identity: 0.75

-tagcgcgctgatattgagcctcagcctccctg	CRISPR spacer
ataat-cgctgatattgaccatcagcctcacca	Protospacer
 **.. ************ * ******** *..

127. spacer 15.14|3175268|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010957 (Sphingobium sp. YBL2 plasmid 3pYBL2-3, complete sequence) position: , mismatch: 8, identity: 0.75

atatcgtccccgcatgccatccgtgc---aattta	CRISPR spacer
ggttcgtccacgaatgccatccgtgccgaaat---	Protospacer
.  ****** ** *************   ***

128. spacer 15.14|3175268|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011665 (Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence) position: , mismatch: 8, identity: 0.75

-atatcgtccccgcatgccatccgtgcaattta	CRISPR spacer
caca-cgtccgcgcaagccatccgtgcagggga	Protospacer
 *.* ***** **** ************.   *

129. spacer 14.1|3148153|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010728 (Phaeobacter inhibens strain P88 plasmid pP88_c, complete sequence) position: , mismatch: 9, identity: 0.719

ctgccacgcgtctgccgcagcgtattcggcgt	CRISPR spacer
gaactcggcgtctgccgcagcctcttcggcga	Protospacer
  .*.  ************** * *******

130. spacer 14.2|3148214|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

gcctatttcgggtgaaaaaccgagatagactt	CRISPR spacer
ttcgcgttcgggcgaataaccgagatagaaat	Protospacer
 .*   ******.*** ************  *

131. spacer 14.2|3148214|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048426 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

gcctatttcgggtgaaaaaccgagatagactt	CRISPR spacer
ttcccgttcgggtgaaaaaccgaggaagaaat	Protospacer
 .*.  ******************. ***  *

132. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to GU943036 (Uncultured phage MedDCM-OCT-S08-C495 genomic sequence) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
atgtttttttatttcatcaattaattttttag	Protospacer
  .  . **************** *******

133. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045196 (Acinetobacter indicus strain TQ23 plasmid p23TQ-37k, complete sequence) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ggggatttttatttcatcaattttttttctat	Protospacer
 ..... *************** *****.***

134. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to CP008937 (Candidatus Caedibacter acanthamoebae plasmid Plasmid_00001, complete sequence) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
agccgattttctttcatcaattatttttttca	Protospacer
 .  *  *** *******************

135. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to CP008939 (Candidatus Caedibacter acanthamoebae plasmid Plasmid_00003, complete sequence) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
agccgattttctttcatcaattatttttttca	Protospacer
 .  *  *** *******************

136. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
tagttttaatatttcatctcttatttttttat	Protospacer
**.  .   *********  ************

137. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014283 (Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
atttttatttatttcctcaattatatttttct	Protospacer
     .********* ******** ***** *

138. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015180 (Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB71, complete sequence) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
agtattatttttttcattaattatttttttca	Protospacer
 . * .**** ******.************

139. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032614 (Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
atttttatttatttcctcaattatatttttct	Protospacer
     .********* ******** ***** *

140. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NC_020240 (Bacillus thuringiensis serovar kurstaki str. HD73 plasmid pAW63, complete sequence) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
agtattatttttttcattaattatttttttca	Protospacer
 . * .**** ******.************

141. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
atattcatttattttatccattattttttacc	Protospacer
  *  *********.*** **********  .

142. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 9, identity: 0.719

taaagcattt---atttcatcaattatttttttat	CRISPR spacer
---attgtttttaatttcatcaattatttctttcg	Protospacer
   * ..***   ****************.***

143. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016845 (Carnobacterium maltaromaticum strain TMW 2.1581 plasmid pL21581-1, complete sequence) position: , mismatch: 9, identity: 0.719

taaagcatttatttca--------tcaattatttttttat	CRISPR spacer
--------ttacttcagtaattcttcaattatttttttat	Protospacer
        ***.****        ****************

144. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NC_018146 (Zymomonas mobilis subsp. mobilis ATCC 29191 plasmid pZZ6.01, complete sequence) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
aggattttttattttatcaattattttattgt	Protospacer
 ..* . *******.************ **.*

145. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to KP836355 (Marinitoga camini virus 1, complete genome) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ttttaaatttatttcatcatgtattttttctt	Protospacer
*   . *************  ********. *

146. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to MN694196 (Marine virus AFVG_250M182, complete genome) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
atattcatttgtttcattaattatttttacag	Protospacer
  *  *****.******.********** .*

147. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to MN693284 (Marine virus AFVG_25M452, complete genome) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
tgcttcgtttattgtatcaattattttttttc	Protospacer
*.   *.****** .*************** .

148. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to MN693152 (Marine virus AFVG_25M11, complete genome) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
tttattttttattttatcaatcattttttttc	Protospacer
*  * . *******.******.******** .

149. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NC_047948 (Staphylococcus phage phiSA_BS2, complete genome) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
atattcttttattttatcaatcatttttttca	Protospacer
  *  * *******.******.********

150. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to MH078572 (Staphylococcus phage phiSA_BS1, complete genome) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
atattcttttattttatcaatcatttttttca	Protospacer
  *  * *******.******.********

151. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to MN693020 (Marine virus AFVG_117M64, complete genome) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
tttattttttattttatcaatcattttttttc	Protospacer
*  * . *******.******.******** .

152. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to AP014380 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S43-C70, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ttttgtttttattttatcaatcattttttttc	Protospacer
*   *. *******.******.******** .

153. spacer 14.7|3148519|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to MK448647 (Streptococcus satellite phage Javan759, complete genome) position: , mismatch: 9, identity: 0.719

gcttccaggaacaagagagaaattatccagcg	CRISPR spacer
acatccagaagcaagagagaaattattttggc	Protospacer
.* *****.*.***************.. *

154. spacer 14.7|3148519|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to MK448649 (Streptococcus satellite phage Javan760, complete genome) position: , mismatch: 9, identity: 0.719

gcttccaggaacaagagagaaattatccagcg	CRISPR spacer
acatccagaagcaagagagaaattattttggc	Protospacer
.* *****.*.***************.. *

155. spacer 15.1|3174475|32|NC_023032|CRISPRCasFinder,CRT matches to NZ_CP042264 (Litoreibacter sp. LN3S51 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

tggtggccaggaaaagcctacgacgacgtgtt	CRISPR spacer
cgacggccaggaaaagcttatgacgacgctaa	Protospacer
.*..*************.**.*******.

156. spacer 15.2|3174536|32|NC_023032|CRISPRCasFinder,CRT matches to NC_009516 (Psychrobacter sp. PRwf-1 plasmid pRWF101, complete sequence) position: , mismatch: 9, identity: 0.719

taaatcccccatttatcaggaaatagatagtt--	CRISPR spacer
gaaatcctccatttatcgggaaat--ccaatcaa	Protospacer
 ******.*********.******   .*.*.

157. spacer 15.4|3174658|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024924 (Sphingomonas sp. Cra20 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cgcgcataatctggtcgagcatgtcttcctgg	CRISPR spacer
cgcgcaaattctggtcgagcatggcgcatcgc	Protospacer
****** * ************** * . ..*

158. spacer 15.8|3174902|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to AP013456 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S23-C23) position: , mismatch: 9, identity: 0.719

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
ggagccgaaatttttttgttcttattttgttc	Protospacer
 *   * *** *********.*********.

159. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029359 (Azospirillum sp. CFH 70021 plasmid unnamed4) position: , mismatch: 9, identity: 0.719

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcggtccgtaggtgttgaagatgcggatg	Protospacer
 **** * ****************   * ..*

160. spacer 15.10|3175024|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049249 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

ggcgctggccgtaggtgttgaagagtggtgcg	CRISPR spacer
tgcgcggcccgtaggtgttgaagatgcgcacc	Protospacer
 **** * ****************   *..*

161. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to AP014212 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C86-MedDCM-OCT-S32-C46, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

taaagcatttatttcatcaattatttttttat	CRISPR spacer
atgtttttttatttcatcaattaattttttta	Protospacer
  .  . **************** ******

162. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to AP014213 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C86-MedDCM-OCT-S38-C287, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

taaagcatttatttcatcaattatttttttat	CRISPR spacer
atgtttttttatttcatcaattaattttttta	Protospacer
  .  . **************** ******

163. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020558 (Paenibacillus larvae subsp. pulvifaciens strain SAG 10367 plasmid pPLP3, complete sequence) position: , mismatch: 10, identity: 0.688

taaagcatttatttcatcaattatttttttat	CRISPR spacer
ctttgcaattgtttcatcaattattttcattg	Protospacer
.   *** **.****************. *

164. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023672 (Clostridium septicum strain DSM 7534 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

taaagcatttatttcatcaattatttttttat	CRISPR spacer
gtacttctttatttcatctattatatttttta	Protospacer
  *  . *********** ***** *****

165. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to AP013395 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C85-MedDCM-OCT-S43-C18) position: , mismatch: 10, identity: 0.688

taaagcatttatttcatcaattatttttttat	CRISPR spacer
taaagcatctatttcatcaagtaactgagcta	Protospacer
********.*********** ** .*   .

166. spacer 14.3|3148275|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to AP013647 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C72-MedDCM-OCT-S41-C96, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

taaagcatttatttcatcaattatttttttat	CRISPR spacer
atttacttttatttcttcaattatatttttta	Protospacer
    .* ******** ******** *****

167. spacer 14.8|3148580|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050098 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence) position: , mismatch: 10, identity: 0.688

cgcagcgcgataatgaacgttgcggcgattgg	CRISPR spacer
acgagcgcgataatgaaaggtgcggccgcgcg	Protospacer
   ************** * ****** ..  *

168. spacer 14.8|3148580|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 10, identity: 0.688

cgcagcgcgataatgaacgttgcggcgattgg	CRISPR spacer
acgagcgcgataatgaaaggtgcggccgcgcg	Protospacer
   ************** * ****** ..  *

169. spacer 14.8|3148580|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053440 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence) position: , mismatch: 10, identity: 0.688

cgcagcgcgataatgaacgttgcggcgattgg	CRISPR spacer
acgagcgcgataatgaaaggtgcggccgcgcg	Protospacer
   ************** * ****** ..  *

170. spacer 14.8|3148580|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgcagcgcgataatgaacgttgcggcgattgg	CRISPR spacer
acgagcgcgataatgaaaggtgcggccgcgcg	Protospacer
   ************** * ****** ..  *

171. spacer 14.8|3148580|32|NC_023032|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgcagcgcgataatgaacgttgcggcgattgg	CRISPR spacer
acgagcgcgataatgaaaggtgcggccgcgcg	Protospacer
   ************** * ****** ..  *

172. spacer 15.8|3174902|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 10, identity: 0.688

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
gttattcaaatttttttgttgttattttgcaa	Protospacer
  *  .**** ********* ********. .

173. spacer 15.8|3174902|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NC_012654 (Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence) position: , mismatch: 10, identity: 0.688

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
gttattcaaatttttttgttgttattttgcaa	Protospacer
  *  .**** ********* ********. .

174. spacer 15.8|3174902|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031095 (Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence) position: , mismatch: 10, identity: 0.688

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
gttattcaaatttttttgttgttattttgcaa	Protospacer
  *  .**** ********* ********. .

175. spacer 15.8|3174902|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
aaactgaaaagttttttgattttagtttgtac	Protospacer
 . *   *********** ***** *****

176. spacer 15.8|3174902|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 11, identity: 0.656

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
caatatggaaattttctgtttttattttgtct	Protospacer
.. ... .**.****.***************

177. spacer 15.8|3174902|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NC_011247 (Borrelia duttonii Ly plasmid pl165, complete sequence) position: , mismatch: 11, identity: 0.656

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
caatatataaattttctgtttttattttgtct	Protospacer
.. ...  **.****.***************

178. spacer 15.8|3174902|32|NC_023032|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 11, identity: 0.656

tgtcgccaaagttttttgtttttattttgtcg	CRISPR spacer
ataatccaaagttttctggttttattttcaaa	Protospacer
     **********.** *********   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

907381 : 1034520

108

Salmonella_phage(25.53%)

portal,tRNA,head,integrase,terminase,tail,capsid,lysis

attL 933808:933837|attR 991662:991691

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032972039.1\|907381_910009_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	2.2e-81	39.0
WP_000906486.1\|910252_910438_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
WP_004386439.1\|911934_912501_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA
WP_007777638.1\|912497_912926_+	DedA family protein	NA	NA	NA	NA
WP_023898100.1\|913018_914575_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_007701138.1\|914727_915243_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_007777635.1\|915679_918190_+	EAL domain-containing protein	NA	NA	NA	NA
WP_023898101.1\|918240_919779_-	multidrug efflux MFS transporter permease subunit EmrB	NA	NA	NA	NA
WP_004386445.1\|919793_920969_-	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA
WP_007777630.1\|921108_921639_-	transcriptional repressor MprA	NA	NA	NA	NA
WP_023898104.1\|922176_923361_-	MFS transporter	NA	NA	NA	NA
WP_007777626.1\|923842_924838_-	glycine betaine/L-proline ABC transporter substrate-binding protein ProX	NA	NA	NA	NA
WP_007777624.1\|924892_925963_-	glycine betaine/L-proline ABC transporter permease ProW	NA	NA	NA	NA
WP_023898106.1\|925955_927158_-	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	3.2e-27	38.3
WP_032968994.1\|927512_928472_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A0M4S3B4	Mycobacterium_phage	2.0e-133	71.8
WP_023898107.1\|928484_930635_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	9.9e-197	49.4
WP_023898108.1\|930616_931018_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA
WP_007777609.1\|931014_931260_-	glutaredoxin-like protein NrdH	A0A1J0MDS4	Mycobacterium_phage	6.3e-07	39.8
WP_004386456.1\|931538_931865_-	DUF883 family protein	NA	NA	NA	NA
WP_004386457.1\|932025_932370_+	YgaC family protein	NA	NA	NA	NA
WP_007777607.1\|932381_932837_-	L-alanine exporter AlaE	NA	NA	NA	NA
WP_007777601.1\|933347_933656_+	hypothetical protein	NA	NA	NA	NA
933808:933837	attL	NA	NA	NA	NA
WP_004386460.1\|933879_934059_-	hypothetical protein	NA	NA	NA	NA
WP_004386461.1\|934284_934443_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA
WP_007777598.1\|934784_936662_+	FIST C-terminal domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.5e-10	55.7
WP_032968992.1\|936783_937152_-	hypothetical protein	NA	NA	NA	NA
WP_071602997.1\|937444_937792_+	DUF1493 family protein	NA	NA	NA	NA
WP_007777593.1\|938117_938507_+	thioesterase family protein	NA	NA	NA	NA
WP_014728196.1\|938589_939225_-	hypothetical protein	NA	NA	NA	NA
WP_032968375.1\|939516_939903_-	hypothetical protein	NA	NA	NA	NA
WP_007777581.1\|940562_941906_-	hypothetical protein	NA	NA	NA	NA
WP_023898113.1\|943409_944666_-	hypothetical protein	E5G6K9	Salmonella_phage	2.4e-102	48.1
WP_023898114.1\|944668_945688_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	2.3e-188	92.3
WP_041461044.1\|945689_946313_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.9e-76	68.1
WP_080675958.1\|946429_946669_+	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	2.3e-30	82.3
WP_015742223.1\|946704_947214_+	phage regulatory CII family protein	A0A218M4I4	Erwinia_phage	1.1e-58	65.7
WP_023898116.1\|947222_947414_+	DUF2724 domain-containing protein	A0A0M4RTI3	Salmonella_phage	1.3e-12	59.7
WP_023898117.1\|947410_947785_+	hypothetical protein	F1BUS4	Erwinia_phage	1.1e-23	46.5
WP_041461045.1\|947855_948089_+	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	3.7e-17	62.3
WP_023898119.1\|948088_948313_+	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	1.2e-25	75.7
WP_023898123.1\|950746_950938_+	hypothetical protein	A0A1S6L006	Salmonella_phage	1.9e-19	77.4
WP_041461046.1\|951172_951850_-	hypothetical protein	NA	NA	NA	NA
WP_023898125.1\|951836_952916_-	hypothetical protein	NA	NA	NA	NA
WP_023898126.1\|952915_953917_-	hypothetical protein	NA	NA	NA	NA
WP_023898127.1\|954322_955357_-\|portal	phage portal protein	M1SV64	Escherichia_phage	3.0e-167	84.1
WP_023898128.1\|955356_957126_-\|terminase	terminase ATPase subunit family protein	A0A0M4RE51	Salmonella_phage	1.0e-303	85.7
WP_023898129.1\|957292_958147_+\|capsid	GPO family capsid scaffolding protein	Q94MB7	Escherichia_virus	2.2e-123	79.2
WP_023898130.1\|958199_959288_+\|capsid	phage major capsid protein, P2 family	Q778Y7	Enterobacteria_phage	1.2e-166	81.6
WP_041461047.1\|959291_960038_+\|terminase	terminase endonuclease subunit	Q94MJ2	Enterobacteria_phage	1.4e-97	79.4
WP_023898132.1\|960133_960628_+\|head	head completion/stabilization protein	M1SNN6	Escherichia_phage	3.8e-59	76.7
WP_023898133.1\|960627_960831_+\|tail	tail protein X	A0A0F7LCN2	Escherichia_phage	1.7e-26	83.6
WP_023898134.1\|960821_961037_+	hypothetical protein	A0A218M4L5	Erwinia_phage	9.7e-12	53.4
WP_041461048.1\|961020_961530_+	lysozyme	A0A218M4K3	Erwinia_phage	2.5e-74	79.6
WP_023898137.1\|961526_961952_+\|lysis	LysB family phage lysis regulatory protein	A0A0M4R2N5	Salmonella_phage	3.3e-19	67.9
WP_041461049.1\|962047_962515_+\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	2.2e-64	75.5
WP_023898141.1\|962979_964296_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	1.2e-147	57.8
WP_023898142.1\|964295_964898_+\|tail	tail assembly chaperone	A0A218M4J2	Erwinia_phage	1.7e-53	50.3
WP_023898143.1\|965043_966213_+	hypothetical protein	NA	NA	NA	NA
WP_023898145.1\|966331_967519_+\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	4.3e-194	85.8
WP_015742190.1\|967532_968054_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	9.5e-77	82.0
WP_023898146.1\|968114_968396_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.5e-28	79.1
WP_071601019.1\|968392_968548_+\|tail	GpE family phage tail protein	Q7Y4C9	Escherichia_virus	1.4e-15	72.5
WP_023898147.1\|968540_971018_+\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	8.1e-235	69.7
WP_041461050.1\|971030_971513_+\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	7.0e-58	67.5
WP_023898149.1\|971512_972664_+	phage late control D family protein	S4TRX8	Salmonella_phage	1.4e-160	76.3
WP_041461051.1\|972722_973136_-	hypothetical protein	S4TTB4	Salmonella_phage	6.9e-30	50.4
WP_080675972.1\|973235_973454_+	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	3.1e-29	77.5
WP_041461052.1\|974548_986752_+	Ig-like domain repeat protein	NA	NA	NA	NA
WP_032983497.1\|986837_988187_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_023898154.1\|988210_990346_+	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	1.7e-26	29.1
WP_032980765.1\|990355_991525_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004387953.1\|991792_992275_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.0e-29	48.1
991662:991691	attR	NA	NA	NA	NA
WP_007763442.1\|992423_992861_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_004387955.1\|992850_993141_+	RnfH family protein	NA	NA	NA	NA
WP_004387956.1\|993249_993594_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_023898158.1\|993811_995473_-	DNA repair protein RecN	NA	NA	NA	NA
WP_007777462.1\|995559_996438_-	NAD(+) kinase	NA	NA	NA	NA
WP_004387959.1\|996560_997154_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_014728249.1\|997223_998513_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_007777459.1\|998531_999326_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_007777457.1\|999488_1000850_+	signal recognition particle protein	NA	NA	NA	NA
WP_004385557.1\|1001108_1001357_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_007870198.1\|1001375_1001924_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_004385559.1\|1001954_1002728_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_002914145.1\|1002773_1003121_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_032983496.1\|1003287_1003749_+	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_007777448.1\|1003801_1005160_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_007777438.1\|1005365_1006436_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0B6VT43	Edwardsiella_phage	3.1e-90	51.5
WP_007777435.1\|1006447_1007569_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_023898163.1\|1007636_1008515_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_023898164.1\|1008545_1009706_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_007777430.1\|1009955_1010297_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_007777426.1\|1010642_1011848_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_007777423.1\|1011900_1012638_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_032968361.1\|1012767_1013748_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_023898168.1\|1013744_1014473_+	polyphenol oxidase	NA	NA	NA	NA
WP_007777417.1\|1014602_1017176_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	4.5e-127	35.1
WP_023898170.1\|1022755_1022932_-	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA
WP_007777415.1\|1023175_1023643_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_007777414.1\|1023682_1025479_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA
WP_023898171.1\|1025636_1026092_+	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	3.3e-33	50.0
WP_007777411.1\|1026209_1027511_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.5e-43	30.6
WP_007777409.1\|1027507_1027831_-	YfiM family lipoprotein	B5AX59	Iodobacteriophage	2.1e-05	37.8
WP_004386364.1\|1027884_1029240_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_032983151.1\|1029352_1032013_-	protein lysine acetyltransferase	NA	NA	NA	NA
WP_023898174.1\|1032046_1032748_-	DTW domain-containing protein	NA	NA	NA	NA
WP_007777393.1\|1032817_1033249_-	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	1.6e-13	39.0
WP_014728268.1\|1033458_1034520_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_2

1224866 : 1271076

Enterobacteria_phage(23.73%)

plate,head,integrase,terminase,tail,protease

attL 1224778:1224793|attR 1269974:1269989

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1224778:1224793	attL	NA	NA	NA	NA
WP_007776948.1\|1224866_1225064_-	AlpA family phage regulatory protein	K7P7V0	Enterobacteria_phage	1.9e-22	77.8
WP_041461058.1\|1225098_1225353_-	hypothetical protein	A0A1V0E5L9	Salmonella_phage	4.1e-09	41.3
WP_023898262.1\|1225405_1226143_-	hypothetical protein	A0A088CE95	Shigella_phage	1.9e-14	31.7
WP_023898263.1\|1226146_1226434_-	hypothetical protein	G8C7K8	Escherichia_phage	5.4e-26	57.7
WP_023898264.1\|1226489_1227011_-	hypothetical protein	F1C5B6	Cronobacter_phage	7.8e-31	50.5
WP_080675959.1\|1227007_1227163_-	DUF2737 family protein	Q9MCR2	Enterobacteria_phage	1.2e-08	58.8
WP_023898266.1\|1227195_1227390_-	hypothetical protein	A0A2H4IYD2	uncultured_Caudovirales_phage	3.3e-11	62.3
WP_023898267.1\|1227395_1227878_-	siphovirus Gp157 family protein	K7P6T5	Enterobacteria_phage	1.2e-54	66.9
WP_023898268.1\|1227861_1228767_-	recombinase RecT	K7PKG9	Enterobacteria_phage	3.3e-133	80.1
WP_023898269.1\|1228766_1229075_-	hypothetical protein	F1C5B9	Cronobacter_phage	1.1e-45	92.2
WP_041461059.1\|1229169_1229325_-	host cell division inhibitory peptide Kil	A5VWA5	Enterobacteria_phage	2.0e-11	69.8
WP_041461060.1\|1229303_1229435_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	NA	NA	NA	NA
WP_023898271.1\|1229529_1229679_-	hypothetical protein	NA	NA	NA	NA
WP_041461061.1\|1229834_1230080_-	hypothetical protein	NA	NA	NA	NA
WP_023899352.1\|1230080_1230242_-	hypothetical protein	NA	NA	NA	NA
WP_080675960.1\|1230286_1230475_-	hypothetical protein	NA	NA	NA	NA
WP_041461196.1\|1230483_1230780_-	hypothetical protein	A5VW99	Enterobacteria_phage	2.6e-07	60.6
WP_012125662.1\|1231536_1232199_-	LexA family transcriptional regulator	Q37946	Enterobacteria_phage	2.6e-119	93.2
WP_041460603.1\|1232316_1232532_+	helix-turn-helix transcriptional regulator	A0A0M4RTV8	Salmonella_phage	6.5e-32	94.4
WP_041461063.1\|1232651_1232930_+	hypothetical protein	A0A220NRS4	Escherichia_phage	1.9e-31	73.9
WP_041461064.1\|1232978_1233776_+	ParB N-terminal domain-containing protein	A0A2H4J902	uncultured_Caudovirales_phage	1.9e-100	69.5
WP_144083701.1\|1233772_1233919_+	DUF2740 family protein	A0A075B8K7	Enterobacteria_phage	4.6e-13	72.9
WP_041461065.1\|1233911_1234811_+	replication protein	K7PL20	Enterobacteria_phage	2.6e-74	87.7
WP_023898279.1\|1234810_1236148_+	hypothetical protein	A0A2I7S0U1	Vibrio_phage	2.9e-77	36.7
WP_023898280.1\|1236175_1236793_+	hypothetical protein	NA	NA	NA	NA
WP_041461197.1\|1237060_1237411_+	hypothetical protein	F1C5C6	Cronobacter_phage	5.4e-60	97.4
WP_179944218.1\|1237412_1237556_+	hypothetical protein	NA	NA	NA	NA
WP_023898283.1\|1237548_1237797_+	hypothetical protein	U5P0J0	Shigella_phage	3.7e-07	53.7
WP_041461066.1\|1237990_1238431_+	recombination protein NinB	F1C5C7	Cronobacter_phage	4.2e-70	91.8
WP_041461067.1\|1238427_1239003_+	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	4.3e-62	62.2
WP_080675961.1\|1238978_1239158_+	NinE family protein	Q76H73	Enterobacteria_phage	2.3e-06	48.2
WP_023898287.1\|1239147_1239372_+	hypothetical protein	NA	NA	NA	NA
WP_041461068.1\|1239371_1239761_+	DUF2591 family protein	G8EYI2	Enterobacteria_phage	4.3e-26	55.9
WP_041461069.1\|1239753_1239936_+	NinF family protein	A0A0M4S6T3	Salmonella_phage	2.2e-20	71.7
WP_032988370.1\|1240191_1240587_+	RusA family crossover junction endodeoxyribonuclease	F1C5C9	Cronobacter_phage	1.5e-71	99.2
WP_051401894.1\|1240583_1240775_+	hypothetical protein	A0A1R3Y5V4	Salmonella_virus	5.2e-09	57.1
WP_041461070.1\|1240771_1240951_+	hypothetical protein	NA	NA	NA	NA
WP_041461071.1\|1240947_1241727_+	antitermination protein	Q76H66	Enterobacteria_phage	1.3e-106	80.5
WP_007825061.1\|1242437_1242644_+	hypothetical protein	NA	NA	NA	NA
WP_051401895.1\|1242640_1242919_+	hypothetical protein	NA	NA	NA	NA
WP_041461072.1\|1242915_1243383_+	glycoside hydrolase family protein	H9C148	Vibrio_phage	4.3e-28	43.8
WP_007864863.1\|1243382_1243637_+	hypothetical protein	NA	NA	NA	NA
WP_023898294.1\|1243633_1243903_+	hypothetical protein	NA	NA	NA	NA
WP_023898295.1\|1243904_1244048_+	hypothetical protein	A0A286SGR9	Klebsiella_phage	4.0e-06	51.1
WP_023898296.1\|1244044_1244233_+	hypothetical protein	NA	NA	NA	NA
WP_038887881.1\|1244448_1245135_+	Rha family transcriptional regulator	A0A192Y918	Salmonella_phage	5.5e-117	92.5
WP_023898298.1\|1245250_1245460_+	hypothetical protein	V5KSC6	Escherichia_phage	8.3e-08	70.5
WP_041461073.1\|1245469_1245946_+\|terminase	terminase	C7U0W1	Enterobacteria_phage	9.3e-55	72.6
WP_023898300.1\|1245947_1247606_+\|terminase	phage terminase large subunit	H9C191	Pectobacterium_phage	3.6e-247	74.7
WP_023898302.1\|1247606_1249121_+	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	2.7e-100	43.0
WP_041461074.1\|1249173_1249869_+\|head	head morphogenesis protein	H9C0V1	Aeromonas_phage	6.9e-67	54.9
WP_041461076.1\|1250258_1251581_+	DUF2213 domain-containing protein	A0A219YCD3	Aeromonas_phage	4.4e-70	42.1
WP_041461078.1\|1251582_1252065_+	hypothetical protein	A0A219YBF2	Aeromonas_phage	2.2e-35	51.0
WP_023898305.1\|1252064_1253099_+	DUF2184 domain-containing protein	A0A219YBB0	Aeromonas_phage	5.6e-89	51.4
WP_023898306.1\|1253102_1253429_+	hypothetical protein	NA	NA	NA	NA
WP_041461079.1\|1253431_1253875_+	DUF4054 domain-containing protein	H9C0W0	Aeromonas_phage	3.7e-21	46.7
WP_105611604.1\|1253943_1254324_+	hypothetical protein	A0A077KC03	Edwardsiella_phage	5.7e-31	54.5
WP_023898308.1\|1254320_1254692_+	hypothetical protein	A0A077KAW7	Edwardsiella_phage	5.5e-47	67.8
WP_041461198.1\|1254889_1255198_+	hypothetical protein	A0A077KC88	Edwardsiella_phage	1.5e-34	69.0
WP_023898311.1\|1255194_1256685_+	DUF3383 domain-containing protein	A0A077KGV4	Edwardsiella_phage	1.9e-207	74.7
WP_041461082.1\|1256695_1257130_+	hypothetical protein	A0A077K9T0	Edwardsiella_phage	9.4e-54	68.8
WP_041461083.1\|1257129_1257537_+	hypothetical protein	A0A077KC08	Edwardsiella_phage	1.0e-41	67.2
WP_041461086.1\|1259561_1260002_-	hypothetical protein	NA	NA	NA	NA
WP_041461088.1\|1260086_1260902_+	hypothetical protein	A0A077KGW3	Edwardsiella_phage	3.8e-88	65.1
WP_041461089.1\|1260898_1261204_+	hypothetical protein	A0A077K9U4	Edwardsiella_phage	1.4e-35	70.0
WP_041461090.1\|1261193_1262057_+	hypothetical protein	A0A077KC17	Edwardsiella_phage	6.6e-67	46.5
WP_041461092.1\|1262049_1262760_+\|plate	phage baseplate assembly protein	A0A077KAY0	Edwardsiella_phage	2.8e-79	61.4
WP_041461096.1\|1262756_1263116_+	hypothetical protein	A0A077KCA1	Edwardsiella_phage	6.6e-37	64.9
WP_023898320.1\|1263112_1264342_+\|plate	baseplate J/gp47 family protein	A0A077KGW9	Edwardsiella_phage	2.5e-152	66.5
WP_041461098.1\|1264338_1264980_+	DUF2612 domain-containing protein	A0A077K9U8	Edwardsiella_phage	2.5e-87	72.6
WP_023898322.1\|1264982_1265894_+\|tail	tail fiber protein	A0A077KC23	Edwardsiella_phage	2.4e-43	63.2
WP_041461099.1\|1265893_1266484_+\|tail	tail fiber assembly protein	K7PMC4	Enterobacterial_phage	1.1e-44	43.9
WP_023898323.1\|1266521_1268375_-	acyltransferase	A0A193GZ69	Enterobacter_phage	2.6e-105	38.0
WP_023898324.1\|1268654_1269812_-\|integrase	tyrosine-type recombinase/integrase	E5AGD0	Erwinia_phage	2.1e-164	73.1
WP_023898326.1\|1270125_1271076_-	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	3.5e-130	80.1
1269974:1269989	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1591178 : 1600165

Burkholderia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007794693.1\|1591178_1591418_-	DinI family protein	K7PKM2	Enterobacterial_phage	5.5e-32	84.8
WP_007776171.1\|1591572_1592697_-	porin OmpC	Q1MVN1	Enterobacteria_phage	3.2e-106	55.9
WP_007776167.1\|1593340_1594039_+	phosphohydrolase	S4W232	Pandoravirus	3.6e-07	25.5
WP_007776166.1\|1594099_1595533_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	5.2e-101	53.3
WP_032968279.1\|1595516_1596014_+	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	4.0e-32	48.0
WP_007776162.1\|1596017_1596929_-	drug/metabolite exporter YedA	NA	NA	NA	NA
WP_023898472.1\|1597107_1598022_+	DUF808 domain-containing protein	NA	NA	NA	NA
WP_004388133.1\|1598111_1598294_+	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_023898473.1\|1598494_1600165_+	cellulose biosynthesis regulator YedQ	A0A127AWB9	Bacillus_phage	7.9e-24	38.6

DBSCAN-SWA_4

2014865 : 2064652

Salmonella_phage(44.44%)

integrase,terminase,tail,holin,protease,lysis

attL 2008959:2008975|attR 2027981:2027997

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2008959:2008975	attL	NA	NA	NA	NA
WP_023898662.1\|2014865_2016116_+\|integrase	site-specific integrase	T1S9J3	Salmonella_phage	1.0e-156	66.5
WP_023898663.1\|2016137_2016299_-	hypothetical protein	NA	NA	NA	NA
WP_032983329.1\|2016390_2016645_-	hypothetical protein	A0A1V0E5L9	Salmonella_phage	5.7e-11	46.0
WP_041461115.1\|2016710_2017019_-	hypothetical protein	I6PD68	Cronobacter_phage	7.6e-26	59.8
WP_023898665.1\|2017173_2017770_-	adenine methylase	A0A2R9YJG0	Escherichia_phage	8.5e-98	85.1
WP_007901910.1\|2017766_2017931_-	DUF1317 family protein	T1SAR0	Salmonella_phage	4.8e-11	61.1
WP_007901913.1\|2017927_2018233_-	PerC family transcriptional regulator	Q858E4	Salmonella_phage	6.9e-19	54.9
WP_007761581.1\|2018345_2018594_-	AlpA family phage regulatory protein	A0A193GYW1	Enterobacter_phage	1.2e-29	74.4
WP_023898666.1\|2018646_2019528_-	recombinase RecT	G9L6A2	Escherichia_phage	1.4e-117	76.2
WP_023898667.1\|2019524_2020346_-	PD-(D/E)XK nuclease-like domain-containing protein	A0A193GYK2	Enterobacter_phage	2.4e-119	76.1
WP_129560328.1\|2020342_2020621_-	hypothetical protein	T1SA88	Salmonella_phage	1.9e-07	35.9
WP_023898669.1\|2020641_2020830_-	hypothetical protein	NA	NA	NA	NA
WP_007901935.1\|2021196_2021787_-	helix-turn-helix transcriptional regulator	Q858D7	Salmonella_phage	2.0e-46	50.3
WP_007761568.1\|2021941_2022172_+	hypothetical protein	NA	NA	NA	NA
WP_007901938.1\|2022320_2022524_+	hypothetical protein	Q858D5	Salmonella_phage	2.6e-22	80.6
WP_023898672.1\|2022520_2023600_+	DNA cytosine methyltransferase	Q858D4	Salmonella_phage	1.4e-151	69.0
WP_050505959.1\|2023577_2024405_+	hypothetical protein	A0A193GZ86	Enterobacter_phage	3.8e-64	48.3
WP_023898675.1\|2024520_2024988_+	crossover junction endodeoxyribonuclease RuvC	Q858D2	Salmonella_phage	1.1e-65	79.9
WP_023898676.1\|2025024_2025558_+	hypothetical protein	F1C5B6	Cronobacter_phage	1.3e-44	63.0
WP_023898678.1\|2025613_2025901_+	hypothetical protein	G8C7K8	Escherichia_phage	2.4e-26	58.8
WP_023898682.1\|2026548_2026887_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	5.8e-43	76.8
WP_023898683.1\|2026915_2027350_+	DUF2513 domain-containing protein	NA	NA	NA	NA
WP_023898684.1\|2027426_2028014_+\|terminase	terminase small subunit	G9L6B7	Escherichia_phage	2.4e-60	67.2
2027981:2027997	attR	NA	NA	NA	NA
WP_023898685.1\|2028006_2029473_+	hypothetical protein	G9L6B8	Escherichia_phage	7.9e-246	82.4
WP_144083702.1\|2029495_2030548_-	hypothetical protein	NA	NA	NA	NA
WP_023898687.1\|2030877_2031087_+	hypothetical protein	NA	NA	NA	NA
WP_041461116.1\|2031107_2032781_+\|tail	tail protein	G9L6C2	Escherichia_phage	1.4e-246	77.5
WP_023898690.1\|2032777_2033092_+	hypothetical protein	T1SBI9	Salmonella_phage	2.7e-18	56.4
WP_023898692.1\|2033088_2033817_+	hypothetical protein	T1SAP9	Salmonella_phage	4.3e-59	74.4
WP_023898693.1\|2033827_2034835_+	hypothetical protein	T1S9H9	Salmonella_phage	3.7e-178	91.0
WP_023898694.1\|2034845_2035238_+	hypothetical protein	T1SA71	Salmonella_phage	2.2e-54	88.5
WP_023898695.1\|2035230_2035512_+	hypothetical protein	Q858G6	Salmonella_phage	1.0e-16	51.0
WP_032986295.1\|2035560_2035896_+	hypothetical protein	Q858G5	Salmonella_phage	1.3e-42	75.7
WP_023898696.1\|2035895_2036501_+	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	3.3e-81	75.1
WP_023898697.1\|2036500_2038978_+	hypothetical protein	A0A0F6TJD3	Escherichia_coli_O157_typing_phage	0.0e+00	78.6
WP_032986296.1\|2038970_2039435_+	hypothetical protein	T1SA73	Salmonella_phage	1.3e-58	66.2
WP_032986297.1\|2039434_2039977_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	4.6e-50	63.6
WP_032986298.1\|2039987_2042609_+	transglycosylase SLT domain-containing protein	G9L6D3	Escherichia_phage	1.7e-52	33.1
WP_023898701.1\|2042610_2044323_+	hypothetical protein	NA	NA	NA	NA
WP_023898702.1\|2044322_2046872_+	hypothetical protein	W6MWW8	Pseudomonas_phage	9.6e-207	45.9
WP_041461117.1\|2047063_2047753_-	hypothetical protein	G9L6E2	Escherichia_phage	1.9e-64	57.0
WP_041461118.1\|2048076_2048334_-	hypothetical protein	T1SA06	Salmonella_phage	5.6e-22	62.5
WP_023898708.1\|2050946_2052389_-	glucosyltransferase domain-containing protein	F1C5A9	Cronobacter_phage	2.6e-31	28.1
WP_041461119.1\|2052389_2053304_-	glycosyltransferase family 2 protein	F1C5B0	Cronobacter_phage	2.5e-165	96.1
WP_041461203.1\|2053300_2053663_-	GtrA family protein	F1C5B1	Cronobacter_phage	6.4e-56	93.3
WP_032806528.1\|2053815_2054220_+	membrane protein	T1SA79	Salmonella_phage	8.7e-54	83.3
WP_032986397.1\|2054206_2054500_+\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	5.0e-27	63.7
WP_023898710.1\|2054489_2055110_+	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	1.7e-88	77.8
WP_041461120.1\|2055109_2055574_+\|lysis	lysis protein	G0ZNC9	Cronobacter_phage	4.2e-36	58.6
WP_080675963.1\|2056190_2057396_-	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA
WP_032983691.1\|2057448_2057979_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_023898717.1\|2058214_2060179_+	U32 family peptidase	Q6DW11	Phage_TP	4.3e-21	27.1
WP_007775328.1\|2060382_2060802_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.0e-33	54.5
WP_023898719.1\|2060803_2062072_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.5e-152	64.4
WP_023898720.1\|2062199_2062607_-	ASCH domain-containing protein	NA	NA	NA	NA
WP_007775324.1\|2063113_2063473_+	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA
WP_007775321.1\|2063459_2063789_+	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA
WP_007775309.1\|2063830_2064652_-\|protease	serine protease	NA	NA	NA	NA

DBSCAN-SWA_5

2432066 : 2442263

Bacillus_phage(14.29%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007783693.1\|2432066_2432531_-	C40 family peptidase	S5MM68	Bacillus_phage	2.8e-11	36.9
WP_007783690.1\|2432608_2433355_-	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	3.8e-10	30.7
WP_004387815.1\|2433354_2433906_-	glutathione peroxidase	NA	NA	NA	NA
WP_032968130.1\|2433935_2434937_-	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_007676383.1\|2435014_2435314_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
WP_007783675.1\|2435318_2437706_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	2.8e-06	26.0
WP_007792775.1\|2437721_2438705_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.4e-33	42.6
WP_023898905.1\|2438923_2439070_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_000124850.1\|2439089_2439446_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_001124225.1\|2439493_2439691_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_012905609.1\|2439788_2440331_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.1e-14	32.3
WP_004387090.1\|2440334_2442263_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.1e-130	37.6

DBSCAN-SWA_6

3337216 : 3399629

Cronobacter_phage(40.62%)

transposase,integrase,tail,capsid,protease

attL 3343403:3343417|attR 3374080:3374094

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007780382.1\|3337216_3338536_+\|integrase	integrase family protein	A0A221SAN4	Ralstonia_phage	4.5e-06	27.7
WP_016246899.1\|3339416_3340181_+	hypothetical protein	NA	NA	NA	NA
WP_071601457.1\|3340642_3341263_+	inovirus Gp2 family protein	NA	NA	NA	NA
3343403:3343417	attL	NA	NA	NA	NA
WP_071601456.1\|3343698_3343962_-\|transposase	transposase	NA	NA	NA	NA
WP_001295708.1\|3343976_3344240_+	hypothetical protein	NA	NA	NA	NA
WP_007780320.1\|3344784_3345354_+	small heat shock protein sHSP20	NA	NA	NA	NA
WP_032986565.1\|3345459_3348309_+	heat shock survival AAA family ATPase ClpK	K4FB40	Cronobacter_phage	4.0e-129	41.1
WP_023899324.1\|3348556_3350374_+\|protease	ATP-dependent zinc metalloprotease FtsH	C7U047	Ostreococcus_tauri_virus	3.6e-99	40.8
WP_001275372.1\|3350461_3350920_+	small heat shock protein sHSP20-GI	NA	NA	NA	NA
WP_023898324.1\|3351282_3352440_+\|integrase	tyrosine-type recombinase/integrase	E5AGD0	Erwinia_phage	2.1e-164	73.1
WP_032986463.1\|3352643_3353006_+	GtrA family protein	F1C5B1	Cronobacter_phage	8.1e-59	99.2
WP_032986462.1\|3353002_3353920_+	glycosyltransferase family 2 protein	F1C5B0	Cronobacter_phage	6.6e-166	96.4
WP_023899329.1\|3353916_3355359_+	glucosyltransferase domain-containing protein	NA	NA	NA	NA
WP_023899330.1\|3355384_3357529_-	hypothetical protein	F1C5A8	Cronobacter_phage	1.1e-54	73.0
WP_041461155.1\|3357585_3360063_-\|tail	phage tail protein	F1C5A7	Cronobacter_phage	0.0e+00	89.8
WP_051401898.1\|3360049_3360466_-	C40 family peptidase	F1C5F2	Cronobacter_phage	8.6e-73	90.6
WP_041461157.1\|3360428_3360899_-	hypothetical protein	F1C5F1	Cronobacter_phage	1.3e-80	94.9
WP_023899332.1\|3360898_3361396_-	hypothetical protein	F1C5F0	Cronobacter_phage	9.6e-95	96.4
WP_023899333.1\|3361395_3364053_-	tape measure protein	Q5G8W8	Enterobacteria_phage	4.7e-71	73.1
WP_041461158.1\|3364113_3364479_-	hypothetical protein	NA	NA	NA	NA
WP_041461159.1\|3364475_3364853_-	hypothetical protein	NA	NA	NA	NA
WP_104677119.1\|3364953_3365259_-	hypothetical protein	A0A222YZ97	Escherichia_phage	5.4e-24	54.5
WP_041461160.1\|3365417_3366251_-	phage antirepressor N-terminal domain-containing protein	G0ZNF0	Cronobacter_phage	4.2e-119	75.5
WP_080675968.1\|3366323_3366482_-	Arc family DNA-binding protein	A0A077KAX5	Edwardsiella_phage	6.0e-11	69.4
WP_023899335.1\|3366582_3366930_+	Arc family DNA-binding protein	A0A0P0ZBD1	Stx2-converting_phage	3.9e-18	48.7
WP_023899336.1\|3366935_3367610_-	hypothetical protein	G0ZNE7	Cronobacter_phage	1.2e-116	92.9
WP_041461161.1\|3367661_3368408_-	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	7.4e-91	71.3
WP_041461162.1\|3368434_3368818_-	hypothetical protein	G0ZNE4	Cronobacter_phage	9.1e-69	96.9
WP_023899338.1\|3368814_3369183_-	hypothetical protein	F1C5E3	Cronobacter_phage	1.6e-59	98.4
WP_041461163.1\|3369184_3369532_-	hypothetical protein	G0ZNE2	Cronobacter_phage	1.2e-38	67.0
WP_023899340.1\|3369599_3369980_-	hypothetical protein	F1C5E2	Cronobacter_phage	4.3e-63	99.2
WP_007847581.1\|3369982_3370180_-	hypothetical protein	NA	NA	NA	NA
WP_023899341.1\|3370189_3371281_-	hypothetical protein	F1C5E1	Cronobacter_phage	1.5e-204	97.8
WP_007706555.1\|3371293_3371722_-	hypothetical protein	F1C5E0	Cronobacter_phage	1.2e-72	100.0
WP_041461164.1\|3371727_3373128_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	2.3e-242	97.6
WP_041461166.1\|3373594_3374569_-\|capsid	minor capsid protein	F1C5D8	Cronobacter_phage	8.6e-156	94.6
3374080:3374094	attR	NA	NA	NA	NA
WP_023899344.1\|3374522_3375980_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	1.8e-258	95.2
WP_023899345.1\|3375991_3377464_-	hypothetical protein	I6PBN3	Cronobacter_phage	5.7e-244	82.8
WP_041461167.1\|3377463_3377979_-	hypothetical protein	A0A0H5AUE2	Pseudomonas_phage	6.1e-52	61.3
WP_041461210.1\|3377988_3378189_-	hypothetical protein	NA	NA	NA	NA
WP_038887881.1\|3378287_3378974_-	Rha family transcriptional regulator	A0A192Y918	Salmonella_phage	5.5e-117	92.5
WP_023898296.1\|3379189_3379378_-	hypothetical protein	NA	NA	NA	NA
WP_023898295.1\|3379374_3379518_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	4.0e-06	51.1
WP_023898294.1\|3379519_3379789_-	hypothetical protein	NA	NA	NA	NA
WP_007864863.1\|3379785_3380040_-	hypothetical protein	NA	NA	NA	NA
WP_041461072.1\|3380039_3380507_-	glycoside hydrolase family protein	H9C148	Vibrio_phage	4.3e-28	43.8
WP_051401895.1\|3380503_3380782_-	hypothetical protein	NA	NA	NA	NA
WP_007825061.1\|3380778_3380985_-	hypothetical protein	NA	NA	NA	NA
WP_041461071.1\|3381695_3382475_-	antitermination protein	Q76H66	Enterobacteria_phage	1.3e-106	80.5
WP_041461070.1\|3382471_3382651_-	hypothetical protein	NA	NA	NA	NA
WP_051401894.1\|3382647_3382839_-	hypothetical protein	A0A1R3Y5V4	Salmonella_virus	5.2e-09	57.1
WP_032988370.1\|3382835_3383231_-	RusA family crossover junction endodeoxyribonuclease	F1C5C9	Cronobacter_phage	1.5e-71	99.2
WP_041461069.1\|3383486_3383669_-	NinF family protein	A0A0M4S6T3	Salmonella_phage	2.2e-20	71.7
WP_041461068.1\|3383661_3384051_-	DUF2591 family protein	G8EYI2	Enterobacteria_phage	4.3e-26	55.9
WP_023898287.1\|3384050_3384275_-	hypothetical protein	NA	NA	NA	NA
WP_080675961.1\|3384264_3384444_-	NinE family protein	Q76H73	Enterobacteria_phage	2.3e-06	48.2
WP_041461067.1\|3384419_3384995_-	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	4.3e-62	62.2
WP_041461066.1\|3384991_3385432_-	recombination protein NinB	F1C5C7	Cronobacter_phage	4.2e-70	91.8
WP_023898283.1\|3385625_3385874_-	hypothetical protein	U5P0J0	Shigella_phage	3.7e-07	53.7
WP_179944218.1\|3385866_3386010_-	hypothetical protein	NA	NA	NA	NA
WP_041461197.1\|3386011_3386362_-	hypothetical protein	F1C5C6	Cronobacter_phage	5.4e-60	97.4
WP_023898280.1\|3386629_3387247_-	hypothetical protein	NA	NA	NA	NA
WP_023898279.1\|3387274_3388612_-	hypothetical protein	A0A2I7S0U1	Vibrio_phage	2.9e-77	36.7
WP_041461065.1\|3388611_3389511_-	replication protein	K7PL20	Enterobacteria_phage	2.6e-74	87.7
WP_144083701.1\|3389503_3389650_-	DUF2740 family protein	A0A075B8K7	Enterobacteria_phage	4.6e-13	72.9
WP_041461064.1\|3389646_3390444_-	ParB N-terminal domain-containing protein	A0A2H4J902	uncultured_Caudovirales_phage	1.9e-100	69.5
WP_041461063.1\|3390492_3390771_-	hypothetical protein	A0A220NRS4	Escherichia_phage	1.9e-31	73.9
WP_041461168.1\|3390883_3391087_-	hypothetical protein	A4KWW0	Enterobacteria_phage	3.3e-17	69.8
WP_041461169.1\|3391190_3391904_+	LexA family transcriptional regulator	A4KWS0	Enterobacteria_phage	2.5e-80	62.2
WP_041461170.1\|3391968_3392664_+	hypothetical protein	A0A1P8BL41	Lactococcus_phage	4.3e-24	47.5
WP_041461171.1\|3392698_3392890_-	hypothetical protein	G8C7T7	Escherichia_phage	1.6e-10	50.0
WP_041461211.1\|3393272_3393623_+	hypothetical protein	F1C5C1	Cronobacter_phage	3.2e-36	79.8
WP_041461172.1\|3393627_3394362_+	pentapeptide repeat-containing protein	Q76H35	Enterobacteria_phage	1.7e-39	90.5
WP_023899352.1\|3394406_3394568_+	hypothetical protein	NA	NA	NA	NA
WP_041461173.1\|3394568_3394751_+	DUF551 domain-containing protein	NA	NA	NA	NA
WP_041461174.1\|3394963_3395095_+	hypothetical protein	K7PHK2	Enterobacteria_phage	2.6e-07	65.1
WP_041461175.1\|3395082_3395229_+	host cell division inhibitory peptide Kil	A5VWA5	Enterobacteria_phage	1.6e-10	65.9
WP_012125672.1\|3395316_3395502_+	hypothetical protein	NA	NA	NA	NA
WP_023899354.1\|3395509_3396121_+	ERF family protein	A5VWA8	Enterobacteria_phage	3.1e-87	83.3
WP_023899355.1\|3396120_3396498_+	hypothetical protein	I6S1T0	Salmonella_phage	5.4e-50	77.2
WP_144083714.1\|3396521_3396827_+	hypothetical protein	NA	NA	NA	NA
WP_007706444.1\|3396837_3396999_+	DUF2737 family protein	A0A1V0E5L8	Salmonella_phage	5.2e-10	64.0
WP_041461177.1\|3396995_3397187_+	DUF1382 family protein	A0A0P0ZC60	Stx2-converting_phage	4.3e-11	55.9
WP_023899357.1\|3397365_3397845_+	hypothetical protein	F1C5B5	Cronobacter_phage	8.8e-29	94.3
WP_032986685.1\|3397837_3398065_+	hypothetical protein	NA	NA	NA	NA
WP_023898263.1\|3398061_3398349_+	hypothetical protein	G8C7K8	Escherichia_phage	5.4e-26	57.7
WP_023898262.1\|3398352_3399090_+	hypothetical protein	A0A088CE95	Shigella_phage	1.9e-14	31.7
WP_041461058.1\|3399142_3399397_+	hypothetical protein	A0A1V0E5L9	Salmonella_phage	4.1e-09	41.3
WP_007776948.1\|3399431_3399629_+	AlpA family phage regulatory protein	K7P7V0	Enterobacteria_phage	1.9e-22	77.8

DBSCAN-SWA_7

3757505 : 3771677

Enterobacteria_phage(62.5%)

integrase

attL 3760641:3760654|attR 3771847:3771860

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_165688901.1\|3757505_3758909_+	DNA (cytosine-5-)-methyltransferase	E5E3X6	Burkholderia_phage	1.3e-107	51.2
WP_007780908.1\|3758954_3760163_-	type II restriction endonuclease	E5E3X4	Burkholderia_phage	4.6e-34	38.1
3760641:3760654	attL	NA	NA	NA	NA
WP_041461181.1\|3760836_3761532_-	hypothetical protein	NA	NA	NA	NA
WP_023899501.1\|3761733_3764067_-	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	82.0
WP_041461182.1\|3764081_3764402_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_007780902.1\|3764398_3764626_-	hypothetical protein	NA	NA	NA	NA
WP_041461183.1\|3764622_3765174_-	ash family protein	Q7M2A7	Enterobacteria_phage	1.0e-36	75.9
WP_023899505.1\|3765170_3765437_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.3e-33	76.1
WP_023899506.1\|3765975_3766719_+	hypothetical protein	NA	NA	NA	NA
WP_023899507.1\|3766721_3766940_+	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	9.5e-15	62.1
WP_023899508.1\|3766968_3767535_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	7.4e-59	64.3
WP_023899509.1\|3767873_3770348_+	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
WP_041461184.1\|3770411_3771677_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	8.2e-74	40.7
3771847:3771860	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3789035 : 3850665

Stx2-converting_phage(28.57%)

transposase,tRNA,integrase

attL 3780188:3780219|attR 3863312:3863343

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3780188:3780219	attL	NA	NA	NA	NA
WP_023899519.1\|3789035_3791891_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.1e-142	37.0
WP_023899520.1\|3792009_3793212_-	DUF898 family protein	NA	NA	NA	NA
WP_032981092.1\|3793406_3793910_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_007780638.1\|3793956_3794763_-	hypothetical protein	NA	NA	NA	NA
WP_023899522.1\|3794807_3795572_-\|tRNA	tRNA-(ms[2]io[6]A)-hydroxylase	NA	NA	NA	NA
WP_007798551.1\|3795619_3796039_-	ribonuclease E inhibitor RraB	NA	NA	NA	NA
WP_007780628.1\|3796202_3797207_+	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_007780625.1\|3797438_3797891_-	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA
WP_032983607.1\|3798562_3799783_+	arginine deiminase	NA	NA	NA	NA
WP_007780614.1\|3799793_3800705_+	carbamate kinase	NA	NA	NA	NA
WP_007780612.1\|3800741_3801746_+	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_023899524.1\|3801794_3803198_+	YfcC family protein	NA	NA	NA	NA
WP_007780604.1\|3803367_3803847_+	ArgR family transcriptional regulator	NA	NA	NA	NA
WP_012125907.1\|3804100_3805036_+	aspartate carbamoyltransferase	M1IFC1	Paramecium_bursaria_Chlorella_virus	6.5e-52	39.9
WP_004388682.1\|3805046_3805508_+	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA
WP_004388683.1\|3805581_3805968_+	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA
WP_000654811.1\|3807232_3808201_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	1.7e-172	91.6
WP_022649395.1\|3808324_3809293_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	6.9e-182	96.9
WP_041461186.1\|3809446_3810772_+	pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	5.5e-113	48.1
WP_016151347.1\|3812015_3812537_+	RNA polymerase sigma factor FecI	NA	NA	NA	NA
WP_004118237.1\|3812533_3813487_+	fec operon regulator FecR	NA	NA	NA	NA
WP_007898891.1\|3813573_3815898_+	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
WP_007898890.1\|3815942_3816845_+	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
WP_004118243.1\|3816841_3817840_+	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
WP_004118246.1\|3817836_3818793_+	Fe(3+) dicitrate ABC transporter permease subunit FecD	A0A2H4IY97	uncultured_Caudovirales_phage	5.3e-17	26.1
WP_004152282.1\|3818793_3819561_+	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	9.8e-14	25.2
WP_007898888.1\|3819659_3819953_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	4.7e-49	95.9
WP_007898884.1\|3820283_3820562_-	EAL domain-containing protein	NA	NA	NA	NA
WP_000427623.1\|3820823_3821828_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_032435706.1\|3822231_3823224_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_007851507.1\|3823593_3824676_+	DNA-binding transcriptional repressor LacI	C6ZCU4	Enterobacteria_phage	6.5e-189	98.1
WP_007894989.1\|3824797_3827872_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	96.8
WP_003846917.1\|3827923_3829177_+	lactose permease	NA	NA	NA	NA
WP_017384068.1\|3830260_3831394_-	glutathione-independent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_022649401.1\|3831825_3832152_+	four-helix bundle copper-binding protein	NA	NA	NA	NA
WP_007897903.1\|3833254_3833914_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_099975484.1\|3834208_3835051_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_017384065.1\|3836081_3836957_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_041461187.1\|3837039_3837393_-	hypothetical protein	NA	NA	NA	NA
WP_000839182.1\|3837391_3837796_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.6e-68	97.8
WP_000612626.1\|3837792_3838140_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_016247073.1\|3838188_3839727_+\|transposase	IS66-like element ISKpn24 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.8e-280	94.5
WP_080675970.1\|3839633_3840062_-	hypothetical protein	NA	NA	NA	NA
WP_157698488.1\|3840027_3840438_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_017384063.1\|3840697_3841822_+	alkene reductase	NA	NA	NA	NA
WP_032622084.1\|3841917_3842226_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_017384060.1\|3843551_3843980_-	hypothetical protein	NA	NA	NA	NA
WP_017384059.1\|3843983_3846101_-	hypothetical protein	NA	NA	NA	NA
WP_007897920.1\|3846088_3847855_-	hypothetical protein	NA	NA	NA	NA
WP_007897923.1\|3847841_3849089_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_088765901.1\|3849461_3850665_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	8.8e-102	62.5
3863312:3863343	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_023032

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection