CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_023018	Pandoraea pnomenusa, complete sequence	1 crisprs	csa3,DEDDh,DinG,cas3,WYL	0	1	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_023018_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023018_1

3847727-3847898

Orphan

Consensus_repeat	Method
CATCGCGTCGCCCTTGCCCATGGCATCGGGTTTGCTCATTGCGCCGCCCTTG	PILER-CR

2 spacers

The CRISPR arrays of NC_023018_1

>merge|NC_023018|1|3847727-3847898|PILER-CR
CATCGCGTCGCCCTTGCCCATGGCATCGGGTTTGCTCATTGCGCCGCCTTTGCCCATGGCATCCGACTTGCCCATGGCATCGCCCTTGGACATCTTCCCGCTCTTGTCCATGTCCTTACGCATGGCGTCGCCCTTGCCCATGGCATCGGGTTTGCTCATTGCGCCGCCCTTG

>NC_023018|1|1|3847727-3847898|PILER-CR
CATCGCGTCGCCCTTGCCCATGGCATCGGGTTTGCTCATTGCGCCGCCTTTG	CCCAT
GGCATCCGACTTGCCCATGGCATCGCCCTTGGACATCTTCCCGCTCTTGTCC	ATGTCCTTACGCATGGCGTCGCCCTTGCCCAT
GGCATCGGGTTTGCTCATTGCGCCGCCCTTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_023018.2\|WP_023871951.1\|3848061_3848880_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239026
NC_023018.2\|WP_023871956.1\|3854525_3855692_-\|DUF2827-domain-containing-protein	unknown	unknown	gnl\|CDD\|371305
NC_023018.2\|WP_023594901.1\|3860740_3861187_-\|carboxypeptidase-regulatory-like-domain-containing-protein	unknown	unknown	unknown
NC_023018.2\|WP_023594922.1\|3835203_3836109_-\|PilW-family-protein	unknown	unknown	gnl\|CDD\|379761
NC_023018.2\|WP_023871952.1\|3848886_3849546_-\|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl\|CDD\|226602
NC_023018.2\|WP_158516342.1\|3855774_3860304_-\|YadA-like-family-protein	unknown	unknown	gnl\|CDD\|227614
NC_023018.2\|WP_023871949.1\|3846400_3847552_+\|molybdenum-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226628
NC_023018.2\|WP_023871947.1\|3843844_3844510_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182632
NC_023018.2\|WP_023594914.1\|3845712_3846411_+\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|181841
NC_023018.2\|WP_145929471.1\|3836147_3836537_-\|hypothetical-protein	unknown	unknown	unknown
NC_023018.2\|WP_023871954.1\|3850163_3850781_-\|carbon-monoxide-dehydrogenase-subunit-G	unknown	unknown	gnl\|CDD\|176853
NC_023018.2\|WP_023871945.1\|3837444_3838932_-\|AdeC/AdeK/OprM-family-multidrug-efflux-complex-outer-membrane-factor	unknown	unknown	gnl\|CDD\|273830
NC_023018.2\|WP_023594907.1\|3851068_3852094_+\|XdhC-family-protein	unknown	unknown	gnl\|CDD\|224886
NC_023018.2\|WP_141572920.1\|3852124_3853261_-\|DUF2827-family-protein	unknown	unknown	gnl\|CDD\|371305
NC_023018.2\|WP_080685149.1\|3849643_3850174_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224916
NC_023018.2\|WP_023594920.1\|3836901_3837159_-\|acyl-CoA-binding-protein	unknown	unknown	gnl\|CDD\|376410
NC_023018.2\|WP_023871946.1\|3842130_3843366_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|380145
NC_023018.2\|WP_023594918.1\|3838935_3842115_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273335
NC_023018.2\|WP_023871955.1\|3853375_3854533_-\|DUF2827-domain-containing-protein	unknown	unknown	gnl\|CDD\|371305
NC_023018.2\|WP_024788549.1\|3844890_3845646_+\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|182641

Protein	Function_ID	Function_description	E-value
NC_023018.2\|WP_023871951.1\|3848061_3848880_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239026	cd02108, bact_SO_family_Moco, bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	1.28697e-84
NC_023018.2\|WP_023871956.1\|3854525_3855692_-\|DUF2827-domain-containing-protein	gnl\|CDD\|371305	pfam10933, DUF2827, Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia.	0
NC_023018.2\|WP_023594922.1\|3835203_3836109_-\|PilW-family-protein	gnl\|CDD\|379761	pfam16074, PilW, Type IV Pilus-assembly protein W. PilW is a family of putative type IV pilus-assembly proteins. PilW is one of the component proteins of the pilus biogenesis process whereby pilus fibers are assembled in the periplasm, emerge onto the cell surface and are there stabilized, to allow bacterial attachment to host cells. PilW is an outer-membrane protein necessary for both the functionality of fibers and their stabilisation.	2.68671e-22
NC_023018.2\|WP_158516342.1\|3855774_3860304_-\|YadA-like-family-protein	gnl\|CDD\|227614	COG5295, Hia, Autotransporter adhesin [Intracellular trafficking and secretion / Extracellular structures].	1.47741e-10
NC_023018.2\|WP_023871952.1\|3848886_3849546_-\|cytochrome-b/b6-domain-containing-protein	gnl\|CDD\|226602	COG4117, COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion].	1.17943e-51
NC_023018.2\|WP_023871947.1\|3843844_3844510_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|182632	PRK10668, PRK10668, DNA-binding transcriptional repressor AcrR; Provisional.	1.26607e-76
NC_023018.2\|WP_023594914.1\|3845712_3846411_+\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	1.6016e-117
NC_023018.2\|WP_023871954.1\|3850163_3850781_-\|carbon-monoxide-dehydrogenase-subunit-G	gnl\|CDD\|176853	cd05018, CoxG, Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	7.27509e-42
NC_023018.2\|WP_023871945.1\|3837444_3838932_-\|AdeC/AdeK/OprM-family-multidrug-efflux-complex-outer-membrane-factor	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	3.05398e-119
NC_023018.2\|WP_023594907.1\|3851068_3852094_+\|XdhC-family-protein	gnl\|CDD\|224886	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones].	1.63676e-59
NC_023018.2\|WP_141572920.1\|3852124_3853261_-\|DUF2827-family-protein	gnl\|CDD\|371305	pfam10933, DUF2827, Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia.	0
NC_023018.2\|WP_080685149.1\|3849643_3850174_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|224916	COG2005, ModE, N-terminal domain of molybdenum-binding protein [General function prediction only].	1.16501e-26
NC_023018.2\|WP_023594920.1\|3836901_3837159_-\|acyl-CoA-binding-protein	gnl\|CDD\|376410	pfam00887, ACBP, Acyl CoA binding protein.	3.29282e-35
NC_023018.2\|WP_024788549.1\|3844890_3845646_+\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	5.52335e-96
NC_023018.2\|WP_023871946.1\|3842130_3843366_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|380145	NF000247, MexA, MexA family multidrug efflux RND transporter periplasmic adaptor subunit.	1.15343e-128
NC_023018.2\|WP_023871949.1\|3846400_3847552_+\|molybdenum-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	5.72831e-127
NC_023018.2\|WP_023871955.1\|3853375_3854533_-\|DUF2827-domain-containing-protein	gnl\|CDD\|371305	pfam10933, DUF2827, Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia.	0
NC_023018.2\|WP_023594918.1\|3838935_3842115_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0

>NC_023018.2|WP_023871949.1|3846400_3847552_+|molybdenum-ABC-transporter-ATP-binding-protein
MTVDVRVRHRFGEFALDAEFAAGMGVTALFGPSGSGKSTVVNAVSGLLRPDSGRIVVGDDVLFDSASGIALPAWRRRIGYVFQDARLLPHLSVRQNLLFGRWLRRRDVSAAGTGAIALAHVVDVLNLGHLLSRRPGALSGGEKQRVGIGRALLSCPRLLLMDEPLASLDHARRLEVLDYLNRIRHELKLPVLYVTHSLDEVMRLADQVVLFKDGRTISQGAPADVLNVHRDALDGVADAPGTVLETRIVAHDARYGLTELAVCATPGADNAPPREAIRLRVPRAGGDVGDTCRILVRERDVAVATAAPVDTSVLNVLRARVCALRDLGDAVEVSATLLGDAAMPDNDAGVTLRARITRFSADQLRLTTGRDVYLLVKSVALTR
>NC_023018.2|WP_023594914.1|3845712_3846411_+|molybdate-ABC-transporter-permease-subunit
MSLTPEEWGIVALSLRVGLWGTLCSLPFAYAAAWLLARRQFPGKALLDAVLHLPLVLPPVVVGFALLVLFGAQGAIGKVLFEWFHFTFAFRWTGAALAAGVMGFPLLVRAIRQALESADIRLEQAAQTLGAGPCLTFLCVTLPLTATGVLHGFVLAFARALGEFGATITFVSNIPGQTQTLPLAIYTATQVPDGDAMVWRLCAISVVLAVATLILSEVLIRFGHRKALGHDG
>NC_023018.2|WP_024788549.1|3844890_3845646_+|molybdate-ABC-transporter-substrate-binding-protein
MLRRALTVATVGAGLLFAGHAAAQQVFAAASMKNALDDLSAAYTRETGKKPVLVYGASSTLARQIEKGAPADVFISADQDWMDYAQKHDLIDTGTRRNLLGNELVLIAPATTTGDVDLKTGAELDAKLGGGRLAMGDPAHVPAGLYGKAALEKLGVWSKVQGRVAAADNVRNALLLVARGEAPYGIVYKTDANAEKRVRIAGTFPADSHAPIIYPVAVTKQANRAEADPFFKFLQSPAALATFQRYGFSRP
>NC_023018.2|WP_023871947.1|3843844_3844510_+|TetR-family-transcriptional-regulator
MARRTKEEAIETRNLLLDTAETVFAQKGVSRTSLADIAEAAGLTRGAIYWHFKNKIDLFNAMTDRIRLPMERMIDEECAEPEDGAPMVRMHEICKLVLKETARNERRRRVLDILFHKCEYTNEMLSVLERQREACADGKQRIMRDMERAIARGQLPAQLDTRRAAIMLHALVVGMMSDWLFLPDYDLGVECDAVVDGFFDMLRTSPAMRRPGTPAVQNATV
>NC_023018.2|WP_023871946.1|3842130_3843366_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MHVKRSSLGMVTAVAIAVMTLAACGKKPQQPQAMVPEVGVVTLQPQNVTLTTDLPGRTSPYRVADVRARVDGIVLKRDFTEGGDVKAGQRLYKIDPATYQAAYENAKATLAKAVANQASTKLLADRYKQLVAAEAVSKQDYDNAVAAALQADADVQAGKAAVDTARINLGYTDVPAPISGRTGLSQVTEGAYVQAGAATLMTTVQQIDPMYVDVTQSAADGLRLRRALADGKLQSAGKNAAAVSLTLEDGTKYPLEGKLQFSDITVDQTTGSVTVRAIFPNPNRELLPGMFVHATLREGVKEGGLLVPQQGVTRDQKGQPTALIVNKEGKVELRQLVTDRAIGDKWLVSSGLAAGDQVIVAGLQKVRPGAPAKAVPAQLPGAQAPAGASAPAAAAAAPASQADAASSAKAQ
>NC_023018.2|WP_023594918.1|3838935_3842115_-|efflux-RND-transporter-permease-subunit
MAKFFIDRPIFAWVIAIVIMLAGALSILKLPVSQYPPIAPPSVQITATYPGASAQTVQDTVTQVIEQQMNGIDHLEYMSSTSDGSGTAQITLTFAQGTNPDIAQVQVQNKLQLATPLLPQQVQQQGIRVAKATKNFLLVIGAYSDDGKMSDIDLANYIAANVQDPISRVNGVGQVQLFGSQYAMRVWVDPQKLNGYNLTVIDVSNAIQSQNVQVSAGELGGAPAVKGQQLNATVMAQSRLQTPEQFRKILLKVNKDGSQVRLGDVARVELGGESYQVVARYNGKPAAGLAITLATGANALQTATAVKQAVTELEPYFPAGMKVDYPYDTTPFVKISIEEVIKTLIEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFGIMGAAGFSINTLSMFGLVLAIGLLVDDAIVVVENVERVMAEEGLSPKEATKKAMGQIVGALVGVALVLSAVFVPMAFFGGSTGAIYRQFSLTIVAAMALSVLVAIVLTPAMCATILKPIKKGEVHEKRGFFGWFNRKFDSSSKAYQGQVERILKRSTPFVIVYVVIVAVVGFLFVRMPTAFLPDEDQGYFFNLVQLPPGATQERTLDVMKQVEKHYLEKEKDAVRSIFTVTGFGFNGRGQNVGIAFTMMRPWDERQSSNLKVQAVIARSYQAFASVKDAMIFAINPPSVPELGNAGGIDFELQDRAGLGHDALMAARNQFLGMAAKNPNLANMRPNGLDDTPQYKVDVDEEKASALGLSIADVYTTLSASWGSSYVNDFIDHGRVKKVYVMAEPKDRMLPQDINKLYVRNASGTMVPFSAFATGKWIYGSPRLERYNGVPAVEIQGMPAPGKSSGDAMKAVEEIAKQLPAGIGLEWTGLSFEERISGSQAPALYAISILIVFLCLAALYESWSIPFSVILVVPLGVLGALLAATLRGLSNDVYFQVGLLTTVGLSAKNAILIVEFAKDLQEQGRTLMEATMEAVRLRLRPILMTSMAFILGVLPLAISNGAGSASQHAIGTGVIGGMLAATFLAIYYVPIFFVLVRKRFAHEDLDTVEHPEARHENPDATDGPAKEGN
>NC_023018.2|WP_023871945.1|3837444_3838932_-|AdeC/AdeK/OprM-family-multidrug-efflux-complex-outer-membrane-factor
MKHKALPMALAAAFLAGCTLAPHYERPEAPVATAFPTGPAYKTPGAANQNGTAGSNAVAAADLGWRDFFTDPRLQKLIEIALQNNRDLRVSMLNIEAARAQYQIQRSALLPSVGAAGQASVQRSPADLTSSGRAGISRSYQVGVGFTSYELDLFGRIQSLKDQALETYLASEDTARAAHITLVSEVATAYLTWLADQELLKLTEDTLKSQQSSYDLTKRSFNVGTASGLDLRQAQTPVDTARANYAQYTRQVAQDENALALLIGQPLPADLPPGRPLDGQGLLADLPAGLPSDLLLRRPDVTAAEHTLKGANANIGAARAAFFPSISLTASAGTASASLSNLFKGGQGAWSFAPTITLPIFAGGQNIANLELAKVQKRIEIANYEKAIQTAFREVSDGLAARGTLDDQIAAQESLVKASDESYKLSDLRYRNGVDSYLNALVSQRSLYSAQQTLIATRLARWTNLVTLYKALGGGWEERTVPANADAASAPAASS
>NC_023018.2|WP_023594920.1|3836901_3837159_-|acyl-CoA-binding-protein
MSDLQARFEAAVAESKQLPERPDNLTLLRIYALYKQGTEGDVTGARPGMTDFVGRAKYDAWEMLKGKSKEEVQQAYVELIEGLKG
>NC_023018.2|WP_145929471.1|3836147_3836537_-|hypothetical-protein
MRADAPGERARHGPHDSHDSHDSRDGRWQRDTRRLWSVRVQRRGMTPNTREGAVGPVRRGRRCRGSMRGAAMLDAVFTLAALMAGAQGLAQWQAASGATPAAVAASSGMVAMAFPSHEAGETSREGRAR
>NC_023018.2|WP_023594922.1|3835203_3836109_-|PilW-family-protein
MMGFTLLEWVLAMPLGLLIVMAAIAIYLAGLRLWRAQAERYDVNERAMFALTQLSRAVAMAGYRNWDPMEGRITAPDKAVRRWPPLRASAECAASVETCARRGWQGSDLMEVQFHGAGYPIGGNGAVQNCSGLSVKALGSPDDRHLSIFYVAKGEDGVPSLFCRYGDYVGPSYLRQAQVLVTGVEAMYLRLGFRVGGNGPLRWSAPLKRLRGTPPRPPAGEGGWDNVAAVAISLVMRGAPRRGAKPTTSRVVEVFDKATGGREYKRLMNAGDVHLHVFTLLAYRRNDGGIGEEAKWLASSW
>NC_023018.2|WP_023871951.1|3848061_3848880_-|molybdopterin-dependent-oxidoreductase
MTFRKSLQRLPSDSPVVRDGEAIVREARARVARHVAEPSRRAFLTRTLSLGGLALLSGCSLDDNAGVASALDGISRWNDRVQAALFRQDVLAPTFSESQITRPFPFNAFYGMDEAPVIDEADYRLELSGLIAERAPWRLDAIREFARVRTAEQITRHVCVEGWSAIGRWGGVTFGDFLRRIGADTTARYVGFKCADDYYTSIDMPTALHPQTLLALTYDGRTLPREYGFPMKLRIPTKLGYKNPKHIRAIFVTNRYPGGYWEDQGYNWFGGS
>NC_023018.2|WP_023871952.1|3848886_3849546_-|cytochrome-b/b6-domain-containing-protein
MEVTMSQPTKSVPPGGVPSMRAPARPGPVQPGWLRLTHWLNVLAVLVMLTSGWRIYNASPIFGFRFPNEITLGGWLGGALRWHFAAMWLLAVNGVVYLLINLASARFARRFFPLTLRGVARDALAALRGRLSHDDPRHYNQVQRAAYLFAVLDLMLLVASGLAVWKPVQLGWLCAALGGFQGARLVHFVAMAGLTAFIAVHVAMVALVPRTLRTMLTGR
>NC_023018.2|WP_080685149.1|3849643_3850174_-|LysR-family-transcriptional-regulator
MPAERRRRKADKTTPVSPEARSRDARARELLASAEALEAAGKPPAQPGVAGYDLRVRVRDGETPVFGPGRLTLLRAIEATGSISAAARRMGMSYRRAWLLVEAMNHEFREPLVTRHIGGVSGGGAALTPFAQNLAAHYDTLINEIRLLLDAHVPTFDAYLKGDRTGIPDDEPPRVR
>NC_023018.2|WP_023871954.1|3850163_3850781_-|carbon-monoxide-dehydrogenase-subunit-G
MELKDSRQLPAARDVVWIALNDPGVLRDCIPGCESIERIDDTTWTVVVGATLGPVSGRWTGRVAVSDVIAPSTYTLTFDGLGSSAGHTQGKAVVTLQSQGPMNTLLKYDLKARIGGEHTTLDAPQIETAARKLADEFFTRLIAAIAPHHALNDRVAADSDVAAALANASATRDAPSTCGRFARWWPWVLALLVLIFIVMWGNHAS
>NC_023018.2|WP_023594907.1|3851068_3852094_+|XdhC-family-protein
MDSVDLEVLKSAVQWTRAGFFVTLGTVVRTWGSAPRPVGSMLAIREDGHMVGSVSGGCVEDDLIERIRNGDWPHDRPQITSYGVTAEEAHRFGLPCGGTLQLVLEPVSEASRIADLLDSIAKFRLVVRELDMKTGIVRMAPGHHAPSVEFDGERLITSHGPRHRLIVIGAGQLSKYVASMACALDYHVIVCDPRSEYADEWQVAGTELSREMPDDLIVRLQLDSHSAVLTLTHDPKLDDMALLEALKSPAFYIGAIGSRINNARRRERLSLFDLSATEIERLHGPVGMHLGARTPAEIAVAILAEMTAIKNGIAVTQTFARRTADAPPREAAAEDGCRSIA
>NC_023018.2|WP_141572920.1|3852124_3853261_-|DUF2827-family-protein
MENASRLRIGITIGLHRADETIWNNGIKQNAIFLADALARCASVYSVALLNTTPVPLGDTLPWSLTRFPTLPFEAAKDDIDLLIELGGQIDADQTGYLKARGVRLVSYCCGSEYLLAAQAMLFDRPAWGAGLFVNQRYDAIWMVPQVADANRPFFEVLRRQRAHAVPFVWSPVFLEACASAQPCGGAYAPHTEPRRLSVMEPNVDIVKFCLYPILIAELAYRERPGAIALLQVTNAQRLAEHSPDFVALMHQLDIVRERKATFLPRYDTPTFLAEYTDVVISHQMANPLNYFYLEVCWQGYALIHNAGLCSDLGYYYQGNDLGAGARRLVEALDRHDAGLAAYRFAQRQQIRRYLPENTEVVRTYEALLGEVMAGPIR
>NC_023018.2|WP_023871955.1|3853375_3854533_-|DUF2827-domain-containing-protein
MSERSNRAAMDRRLVVGVSLFVKGSGQSLWENGIFQNCLLLVMLLRRSPYVADAVMVNGGNAATPSPDLMLEATNIPLITLEAAMARCDVMIEMSAQLDVAWIAAFRERGGKVVTMRVGNDYVIDIERAMFGKPPGFLFSGATYDGVWTIPEFGVTCRSYFECALRTPVTIVPHIWHPMLFDRARAALGEQEAFGYRPGRSRWRVAIFEPNICMVKTCVIPMLATGLAYRAEPSFAESVLVCNTLHLKEHATFVHFARSLDIVDHGVASFQGRFALFEFMSRHGDAVVSHTWENAQNYLYYELLYGGYPLVHNSPFLGKCGYFYPGFDCEEGARRLLEAFRTHDDNLEQYRRDARQLLDDVSIENAANVSAYSEAIAALYRPAGA
>NC_023018.2|WP_023871956.1|3854525_3855692_-|DUF2827-domain-containing-protein
MSAIRSRHAAGRRPAVGISLFARDAQQIWENGIHQNVAFLAMMLKACDRIGPVYFLNGGDAGSLPPGLQLHDLGVPLVAPADVTHELDVVIQMGAQLPREWLRRMKALGARLIACFVGNTYSELCETPIFGKPSGHLFNGSPFDEAWILRKSQSIDAAILRTVMRIPVVTIPHLWSPYFIERRCRELASHGLHFGYRPREGKWRLSIAEPNISVVKSCQYPMLAADAFHRRHPGAVEKLTVVNTTNVREHPTFVYFANRLDLVRQHKAAFTDRIDLPLLLAQHTDAVISHQWENAQNYLYYDTLYGGYPLIHNTRMLGDAGYYYPSFDAVAGAAALRDAWVHYDASLADYRRRADAVLRAVSIDNPDNWQVIAGRLLAPTGSEGGVDV
>NC_023018.2|WP_158516342.1|3855774_3860304_-|YadA-like-family-protein
MNKTYRLVFSRRTNAWVAVAEICTGQGKAGGSRRGASLKRASVLLCGGAALCLASLPAPARAKAADGKAPCRIDWSLVAHGYGAVSAWGDECPGRGHHAAMVALRGGTLAATYHDDASGEGARAGTASRNDPRNTEIGSGAVATGQGAMAIGAQSKAAGEYSMTLGAWSKASGKYAAAIGYAATASPIGSVAIGDWAVADEAVGTPSATINGQTYAFAGGAPMATMSIGSNRGLRTITRVAAGRISSSSTDATNGSQLNATNVALSRIGTDISGFKASMSTGMSSISSSLSSVASGISSLSTGSARDLENAVKYDNASRESVSLGNAVSAKPVKLTNLADGRDASDAVTVRQLSVAYRGLTSLSTSTASLSDGVMSLSTGLSHVTSLVADTENVIRYDDESQESVTFGNLLSVKPVKLTNVADGARLNDAVTVRQLSQTNSGVASLSTGAVATNKSVNSLSTGLRKMVGLTAGIETSVQYDDDTQGVVTFGSRVSARPVILTNVAEGVNATDAVNVRQMSATNSRVGSLSTGMAALSKNVGSLSTGAVSLGQGLTSLSTGATALSDRVTSLSTGLSKATALATDVERFVQYDTTQRARLTLGGTSARAPVKLGNVADGETPRDAVNFGQLGEVSRHVESLSTGAVVLGQGVTSLSTGAVSLGQGLTSLSTGAVVLGQGVTSLSTGAVVLGQGLTSLSTGAVSLSQGVTSLSTGLSTVAALTADISSFAKYDSDRRDMLTLGGKNPTAPVALTNLADGVRNSDAVTVRQLGVTNSNVMRLSTSMATFEIGVGSLSTGMKSIGGTVESLVSEMEIAVQYDNATKTKLRLGGLSRTPVSLGNVADGTRPNDAVNAAQLGTTNSTVASLSTTLSGLVAPGAVVRSANGRSHRTLVAGGVAATGEHNQDGAVTLANVADGERAGDAVNFAQLSATNRHVGSISTSIDKRVGALSTRLNKIERLSQGTGNGVQYDDGSHSKITLGNIVTSTPVTLTNVADGKNPSDAVTFRQLSTTRSSVGVLWKRIGTTDEQVGSLSTGMTKAEKRLTMLEANAEDYVGYDGQTRDTLTLGDTVSRRSVRVRNVSKGVELGDAVNFAQLSETNRTVGTLSTGLVRSERKLRSLAVDIENSARYDDASRGMLTLGGTGASSPVALANVADGTHPTDAVNFRQLSETNRNVTSLSTGLKQMASVTPGDSRAVVYDDLRRERVKLGGAAASKPVALTNLAAGVASTDAVNVSQLQMTDSRVMSLSTSTSTGIGDMLIAMNSLASRLSASVGSQRPPTDGDSGGALKQTAEPASKQASYVSVNDGGSSKGNARGEGASGSGAMAIGVDASAVGQGSAALGARAATPGANAVAIGHAASAKEADAVAMGAGAVASGAGAVAIGANAVAQDPGTVSFGAPGSERRLTNLAPGRRATDAATVGQLAGVQAGVNQVARRAYSGIAAATALAMIPEVDPGRRVALGVGSATFQGQAAVSIGASVRFTDNLKARLGAGISRQGNTYAAGVSYQW
>NC_023018.2|WP_023594901.1|3860740_3861187_-|carboxypeptidase-regulatory-like-domain-containing-protein
MWQAWQRWSVAAATAATLAATMGGISVAHAQGGMLPPSMQQGSVTYVSGGIDSDESGAFKREASHWPLSIEMAARGDGANEYVADAQVQILRGGSTVLDTRAKGPFMLVKLPEGDYTVKATHNGKPMTKDVKVSPKGHASAVFLWPHD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_023018_1	1.2\|3847836\|32\|NC_023018\|PILER-CR	3847836-3847867	32	NZ_CP005193	Sphingobium sp. MI1205 plasmid pMI4, complete sequence	9047-9078	10	0.688
NC_023018_1	1.2\|3847836\|32\|NC_023018\|PILER-CR	3847836-3847867	32	NZ_CP005085	Sphingobium sp. TKS plasmid pTK1, complete sequence	393788-393819	10	0.688

1. spacer 1.2|3847836|32|NC_023018|PILER-CR matches to NZ_CP005193 (Sphingobium sp. MI1205 plasmid pMI4, complete sequence) position: , mismatch: 10, identity: 0.688

gacatcttcccgctcttgtccatgtccttacg	CRISPR spacer
atcatcgtcccgctcatgtccatgttaaaggg	Protospacer
. **** ******** *********.   . *

2. spacer 1.2|3847836|32|NC_023018|PILER-CR matches to NZ_CP005085 (Sphingobium sp. TKS plasmid pTK1, complete sequence) position: , mismatch: 10, identity: 0.688

gacatcttcccgctcttgtccatgtccttacg	CRISPR spacer
atcatcgtcccgctcatgtccatgttaaaggg	Protospacer
. **** ******** *********.   . *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1713305 : 1824706

111

Acidithiobacillus_phage(24.32%)

tRNA,tail,head,integrase,portal,transposase,terminase,capsid

attL 1709574:1709592|attR 1812951:1812969

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1709574:1709592	attL	NA	NA	NA	NA
WP_023873649.1\|1713305_1714688_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_023596811.1\|1716159_1716477_+	hypothetical protein	NA	NA	NA	NA
WP_145929444.1\|1717419_1717740_-	hypothetical protein	NA	NA	NA	NA
WP_023596808.1\|1717738_1717906_+	hypothetical protein	NA	NA	NA	NA
WP_023596807.1\|1717905_1718271_+	hypothetical protein	NA	NA	NA	NA
WP_023873655.1\|1718491_1719952_+	M20 family metallopeptidase	NA	NA	NA	NA
WP_023596805.1\|1719996_1721250_-	hydantoinase/carbamoylase family amidase	NA	NA	NA	NA
WP_023596804.1\|1721376_1722327_-	dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_023873657.1\|1722319_1723180_-	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA
WP_023873658.1\|1723176_1724433_-	MFS transporter	NA	NA	NA	NA
WP_023873659.1\|1724569_1724893_-	hypothetical protein	NA	NA	NA	NA
WP_023596800.1\|1725074_1726127_-	porin	NA	NA	NA	NA
WP_023873661.1\|1726641_1727496_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_023873662.1\|1727797_1729477_+	hypothetical protein	NA	NA	NA	NA
WP_023873663.1\|1729840_1730563_+	gluconate 2-dehydrogenase subunit 3 family protein	NA	NA	NA	NA
WP_023596796.1\|1730566_1732342_+	GMC family oxidoreductase	NA	NA	NA	NA
WP_025249395.1\|1732353_1733757_+	c-type cytochrome	NA	NA	NA	NA
WP_023596794.1\|1733906_1735205_-	MFS transporter	NA	NA	NA	NA
WP_023873666.1\|1735284_1736184_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023873668.1\|1736435_1737035_+	LysE family translocator	NA	NA	NA	NA
WP_023596791.1\|1737164_1738244_+	linear amide C-N hydrolase	NA	NA	NA	NA
WP_023596790.1\|1738366_1739125_+	membrane protein	NA	NA	NA	NA
WP_080685295.1\|1739204_1740344_-	MFS transporter	NA	NA	NA	NA
WP_023873675.1\|1741650_1743216_+	recombinase family protein	E5DV73	Deep-sea_thermophilic_phage	1.4e-11	27.7
WP_023873676.1\|1743212_1744112_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_023873677.1\|1744108_1744990_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_023873678.1\|1745244_1746186_-	hypothetical protein	NA	NA	NA	NA
WP_024788806.1\|1746252_1746465_-	hypothetical protein	NA	NA	NA	NA
WP_023873680.1\|1746607_1747675_+	ImmA/IrrE family metallo-endopeptidase	A0A0U4JD08	Gordonia_phage	3.8e-24	29.2
WP_023873681.1\|1747655_1748159_+	PIN domain-containing protein	NA	NA	NA	NA
WP_023873682.1\|1748174_1749734_+	SAM-dependent DNA methyltransferase	A0A2I6PG28	Plesiomonas_phage	4.9e-12	25.8
WP_080685292.1\|1749723_1750956_+	restriction endonuclease subunit S	A0A142K7G3	Mycobacterium_phage	1.8e-09	30.8
WP_023873686.1\|1750952_1751699_+	abortive infection family protein	NA	NA	NA	NA
WP_023873688.1\|1751698_1754842_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	1.6e-73	30.9
WP_023873689.1\|1754843_1756286_+	SIR2 family protein	NA	NA	NA	NA
WP_023873690.1\|1756290_1756782_+	TIR domain-containing protein	NA	NA	NA	NA
WP_023873691.1\|1756842_1757604_+	hypothetical protein	NA	NA	NA	NA
WP_023873692.1\|1757939_1758395_-	hypothetical protein	NA	NA	NA	NA
WP_023873693.1\|1758424_1758769_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_024788808.1\|1758735_1759101_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_023873695.1\|1759169_1760525_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	1.3e-104	46.5
WP_051399248.1\|1760535_1761612_-\|transposase	IS481 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	3.2e-135	66.4
WP_024788899.1\|1762027_1762264_-	hypothetical protein	NA	NA	NA	NA
WP_080685388.1\|1762260_1762710_-	lysozyme	Q2A0C5	Sodalis_phage	8.8e-31	52.5
WP_023873700.1\|1762706_1763261_-	phospholipase	NA	NA	NA	NA
WP_013105954.1\|1763257_1763512_-	hypothetical protein	NA	NA	NA	NA
WP_023873701.1\|1763595_1763889_-	hypothetical protein	K4I403	Acidithiobacillus_phage	7.5e-15	49.5
WP_023873703.1\|1763885_1765283_-	radical SAM/SPASM domain-containing protein	A0A0X8WPP5	Ralstonia_phage	1.7e-104	45.0
WP_023873704.1\|1765287_1766085_-	hypothetical protein	NA	NA	NA	NA
WP_023873706.1\|1766145_1767237_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	6.9e-53	36.5
WP_023873708.1\|1767233_1768748_-	hypothetical protein	A0A0B4ZZT7	Achromobacter_phage	1.3e-28	44.6
WP_023873709.1\|1768769_1772471_-	hypothetical protein	C7BGD4	Burkholderia_phage	1.1e-145	41.2
WP_024788901.1\|1772470_1773139_-\|tail	tail assembly protein	K4NXD4	Escherichia_virus	4.8e-25	36.0
WP_036642930.1\|1773135_1773855_-	C40 family peptidase	D6PG99	uncultured_phage	3.0e-65	50.2
WP_023873714.1\|1773851_1774550_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	8.8e-54	47.2
WP_023873716.1\|1774595_1774946_-\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	4.3e-09	35.5
WP_023873718.1\|1774956_1777821_-	hypothetical protein	A0A2I5ARC1	Synechococcus_phage	3.7e-13	41.0
WP_023873719.1\|1777830_1778079_-	hypothetical protein	NA	NA	NA	NA
WP_023873720.1\|1778213_1778555_-	hypothetical protein	NA	NA	NA	NA
WP_023873721.1\|1778561_1779062_-	hypothetical protein	NA	NA	NA	NA
WP_023873722.1\|1779072_1779432_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_023873723.1\|1779428_1779875_-	hypothetical protein	G3ENA5	Psychrobacter_phage	3.8e-10	34.8
WP_023873724.1\|1779871_1780234_-\|head	phage head closure protein	NA	NA	NA	NA
WP_013105936.1\|1780234_1780918_-\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_013105935.1\|1780924_1781098_-	hypothetical protein	NA	NA	NA	NA
WP_023873725.1\|1781155_1782652_-\|capsid	phage major capsid protein	A4JX01	Burkholderia_virus	3.1e-80	39.1
WP_024788903.1\|1782776_1783700_-	S49 family peptidase	A4JX00	Burkholderia_virus	2.1e-47	39.3
WP_023873727.1\|1783692_1785000_-\|portal	phage portal protein	A4JWZ9	Burkholderia_virus	2.4e-108	50.9
WP_023873728.1\|1784999_1785203_-	hypothetical protein	NA	NA	NA	NA
WP_036642932.1\|1785202_1786948_-\|terminase	terminase large subunit	A0A141GEV8	Brucella_phage	1.4e-153	52.5
WP_013105929.1\|1786981_1787218_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_023873730.1\|1787214_1787625_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_023873731.1\|1787676_1788177_-\|terminase	phage terminase small subunit P27 family	A0A2D1GNP3	Pseudomonas_phage	1.4e-05	31.5
WP_023873732.1\|1788324_1788879_+	hypothetical protein	NA	NA	NA	NA
WP_023873733.1\|1788820_1789327_-	HNH endonuclease	A0A2D1GNP5	Pseudomonas_phage	1.3e-14	39.2
WP_023873734.1\|1789424_1789898_+	DUF3489 domain-containing protein	A0A2H4JE21	uncultured_Caudovirales_phage	2.5e-23	74.6
WP_080685405.1\|1789879_1791106_-	site-specific DNA-methyltransferase	K4HZA5	Acidithiobacillus_phage	5.5e-160	68.4
WP_023873736.1\|1791332_1791713_-	RNA polymerase subunit sigma	NA	NA	NA	NA
WP_023873737.1\|1791705_1791918_-	hypothetical protein	NA	NA	NA	NA
WP_174554934.1\|1791919_1792432_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	7.9e-60	73.1
WP_024788906.1\|1792704_1794891_-	AAA family ATPase	A0A1B2LRQ1	Wolbachia_phage	9.1e-105	33.3
WP_023873742.1\|1794890_1795646_-	hypothetical protein	K4HZA0	Acidithiobacillus_phage	9.8e-83	61.0
WP_023873743.1\|1795645_1796068_-	hypothetical protein	K4I3X7	Acidithiobacillus_phage	4.7e-26	47.2
WP_023873745.1\|1796064_1797738_-	DEAD/DEAH box helicase	A0A0A1CM43	Vibrio_phage	1.7e-34	27.6
WP_023873746.1\|1797753_1798359_-	hypothetical protein	K4ICM8	Acidithiobacillus_phage	1.2e-62	59.8
WP_023873747.1\|1798361_1799249_-	ATP-binding protein	K4HZX9	Acidithiobacillus_phage	2.2e-102	66.5
WP_023873748.1\|1799245_1799560_-	hypothetical protein	NA	NA	NA	NA
WP_023873749.1\|1799565_1800036_-	hypothetical protein	K4HZ96	Acidithiobacillus_phage	1.0e-29	43.1
WP_023873750.1\|1800032_1800245_-	DNA-binding protein	NA	NA	NA	NA
WP_023873751.1\|1800427_1801435_-	hypothetical protein	NA	NA	NA	NA
WP_023873752.1\|1801397_1802627_-	hypothetical protein	NA	NA	NA	NA
WP_023873753.1\|1802834_1803158_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_023873755.1\|1803154_1804069_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_023873757.1\|1804086_1805301_+	hypothetical protein	NA	NA	NA	NA
WP_023873758.1\|1805687_1806188_+	DUF2924 domain-containing protein	NA	NA	NA	NA
WP_023873760.1\|1806184_1807540_+	recombinase family protein	K4ICM1	Acidithiobacillus_phage	9.8e-142	58.7
WP_023873761.1\|1807536_1807965_+	hypothetical protein	NA	NA	NA	NA
WP_024788907.1\|1808700_1812687_-	DUF748 domain-containing protein	NA	NA	NA	NA
WP_023596787.1\|1812800_1813526_-	HAD-IA family hydrolase	NA	NA	NA	NA
1812951:1812969	attR	NA	NA	NA	NA
WP_023873764.1\|1813527_1814226_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA
WP_023873765.1\|1814507_1815641_-	alanine dehydrogenase	NA	NA	NA	NA
WP_023596784.1\|1815739_1817026_-	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_023596783.1\|1817130_1817619_+	Lrp/AsnC ligand binding domain-containing protein	NA	NA	NA	NA
WP_023873766.1\|1817629_1818748_-	PA0069 family radical SAM protein	A0A1C9EG49	Acidianus_two-tailed_virus	1.5e-15	28.9
WP_023596781.1\|1818964_1819918_-	DUF2520 domain-containing protein	NA	NA	NA	NA
WP_023596780.1\|1819936_1820386_-	membrane protein	NA	NA	NA	NA
WP_023873767.1\|1820395_1821211_-	META and DUF4377 domain-containing protein	NA	NA	NA	NA
WP_080685392.1\|1821397_1822612_-	sorbosone dehydrogenase family protein	NA	NA	NA	NA
WP_017234865.1\|1822835_1823087_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_023596776.1\|1823215_1823866_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_023596775.1\|1823926_1824706_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_2

2150757 : 2157802

Pseudomonas_virus(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023873967.1\|2150757_2151423_-	hypothetical protein	D5LH17	Escherichia_phage	4.9e-54	51.2
WP_023873968.1\|2151419_2152244_-	DNA adenine methylase	Q5QF26	Pseudomonas_virus	3.4e-97	64.1
WP_023873970.1\|2152279_2152849_+	hypothetical protein	Q6JII1	Burkholderia_virus	3.3e-22	39.4
WP_051399248.1\|2152927_2154004_+\|transposase	IS481 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	3.2e-135	66.4
WP_023873971.1\|2154030_2154663_-	hypothetical protein	Q5QF30	Pseudomonas_virus	2.3e-37	44.0
WP_023873973.1\|2154790_2155741_-	hypothetical protein	NA	NA	NA	NA
WP_023873974.1\|2155733_2156066_-	DUF551 domain-containing protein	NA	NA	NA	NA
WP_023873975.1\|2156062_2157802_-	AAA family ATPase	H2BD46	Pseudomonas_phage	4.0e-87	39.4

DBSCAN-SWA_3

2170525 : 2203154

Burkholderia_phage(46.67%)

plate,terminase,capsid,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010806546.1\|2170525_2170717_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	5.6e-11	53.3
WP_023874002.1\|2171360_2172734_+	ParB N-terminal domain-containing protein	R4THK0	Halovirus	7.0e-87	42.5
WP_023874003.1\|2172733_2173144_+	hypothetical protein	NA	NA	NA	NA
WP_023874004.1\|2173094_2174651_+\|terminase	phage terminase large subunit	H9C0C7	Vibrio_phage	4.6e-111	45.4
WP_023874005.1\|2174668_2176150_+	DUF1073 domain-containing protein	A9YWZ7	Burkholderia_phage	5.6e-175	61.6
WP_145929493.1\|2176167_2176905_+\|capsid	minor capsid protein	A9YWZ8	Burkholderia_phage	1.1e-65	55.0
WP_023874007.1\|2176908_2177424_+	hypothetical protein	A9YX01	Burkholderia_phage	1.8e-51	53.2
WP_023874008.1\|2177577_2179047_+	DUF2213 domain-containing protein	A9YX03	Burkholderia_phage	2.5e-127	65.6
WP_023874011.1\|2179056_2179560_+	hypothetical protein	NA	NA	NA	NA
WP_023874012.1\|2179628_2180717_+	DUF2184 domain-containing protein	A9YX23	Burkholderia_phage	2.3e-141	79.7
WP_023874013.1\|2180719_2181136_+	hypothetical protein	NA	NA	NA	NA
WP_023874014.1\|2181175_2181559_+	DUF4054 domain-containing protein	A9YX25	Burkholderia_phage	1.8e-40	67.5
WP_023874015.1\|2181591_2182179_+	hypothetical protein	A9YX26	Burkholderia_phage	1.5e-30	46.0
WP_023874016.1\|2182181_2182553_+	hypothetical protein	A9YX28	Burkholderia_phage	1.2e-49	78.9
WP_028730765.1\|2182556_2183114_+	hypothetical protein	A9YX29	Burkholderia_phage	2.2e-55	56.8
WP_023874018.1\|2183145_2184621_+	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	3.1e-109	48.1
WP_023596439.1\|2184633_2185074_+	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	4.1e-33	49.3
WP_023874019.1\|2185073_2185583_+	hypothetical protein	A0A0N7IRF3	Acinetobacter_phage	5.0e-14	34.8
WP_145929453.1\|2185540_2185771_+	hypothetical protein	NA	NA	NA	NA
WP_023874021.1\|2185763_2187572_+	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	A0A2H4J9N7	uncultured_Caudovirales_phage	1.3e-45	37.2
WP_023874022.1\|2187568_2188150_+	hypothetical protein	A0A0M3ULD5	Salmonella_phage	9.7e-22	38.4
WP_023874023.1\|2188151_2188466_+	hypothetical protein	A0A0M4R5B7	Salmonella_phage	3.1e-14	40.4
WP_024788420.1\|2188696_2189194_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_072619098.1\|2189312_2189480_+	Arc family DNA-binding protein	NA	NA	NA	NA
WP_024788421.1\|2189558_2190533_+	hypothetical protein	A5VW58	Enterobacteria_phage	4.9e-50	41.1
WP_023874027.1\|2190642_2191212_+	hypothetical protein	A0A2H4YEU5	Salmonella_virus	8.8e-36	41.5
WP_023874028.1\|2191220_2191679_+	hypothetical protein	NA	NA	NA	NA
WP_023596434.1\|2193009_2193417_-	hypothetical protein	NA	NA	NA	NA
WP_023874030.1\|2193429_2194176_+	hypothetical protein	A9YX06	Burkholderia_phage	1.2e-104	78.6
WP_023874031.1\|2194178_2194526_+	hypothetical protein	A9YX11	Burkholderia_phage	2.9e-37	69.2
WP_023874032.1\|2194522_2195704_+\|plate	baseplate J/gp47 family protein	A9YX12	Burkholderia_phage	1.1e-144	70.0
WP_023874034.1\|2195705_2196368_+	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	3.8e-91	71.4
WP_023874036.1\|2196428_2197592_+	hypothetical protein	A0A2H4IYR0	uncultured_Caudovirales_phage	4.1e-11	50.6
WP_023874037.1\|2197604_2197766_+	hypothetical protein	D6PFS9	uncultured_phage	4.9e-08	57.8
WP_023874038.1\|2197846_2198377_+	glycoside hydrolase family 104 protein	Q6J1Q5	Burkholderia_virus	4.8e-44	56.3
WP_023874039.1\|2198391_2198688_+\|holin	phage holin family protein	C7BGD7	Burkholderia_phage	1.8e-19	52.8
WP_023874040.1\|2198692_2199205_+	hypothetical protein	NA	NA	NA	NA
WP_023874041.1\|2199201_2199399_+	hypothetical protein	NA	NA	NA	NA
WP_023874042.1\|2199404_2199710_+	hypothetical protein	NA	NA	NA	NA
WP_023874043.1\|2199720_2200149_+	hypothetical protein	NA	NA	NA	NA
WP_023874045.1\|2200145_2200529_+	DUF1353 domain-containing protein	A0A1L2CVI8	Pectobacterium_phage	2.1e-17	45.0
WP_023874047.1\|2200585_2200885_-	hypothetical protein	NA	NA	NA	NA
WP_023874049.1\|2200900_2201158_-	hypothetical protein	NA	NA	NA	NA
WP_145929454.1\|2201467_2202094_+	hypothetical protein	NA	NA	NA	NA
WP_023874051.1\|2202047_2203154_+	ImmA/IrrE family metallo-endopeptidase	A0A0U4JD08	Gordonia_phage	1.9e-42	34.4

DBSCAN-SWA_4

4686092 : 4741326

Micromonas_sp._RCC1109_virus(33.33%)

tRNA,transposase,integrase

attL 4706730:4706789|attR 4742233:4743153

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023872352.1\|4686092_4687832_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_023594145.1\|4688836_4689412_+	CNP1-like family protein	NA	NA	NA	NA
WP_023594144.1\|4689617_4690751_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	3.2e-61	41.0
WP_023594143.1\|4690857_4691997_-	GTPase ObgE	NA	NA	NA	NA
WP_023594142.1\|4692145_4692406_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_023594141.1\|4692434_4692746_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_023594140.1\|4693022_4694003_+	polyprenyl synthetase family protein	A0A1V0SE37	Indivirus	8.2e-05	23.4
WP_158443181.1\|4695072_4695807_+	replication initiator protein A	NA	NA	NA	NA
WP_020850773.1\|4695910_4696216_+	hypothetical protein	NA	NA	NA	NA
WP_023594137.1\|4696278_4698393_+	DotA/TraY family protein	NA	NA	NA	NA
WP_004541357.1\|4698402_4698924_+	hypothetical protein	NA	NA	NA	NA
WP_004541389.1\|4699150_4701352_+	AAA family ATPase	NA	NA	NA	NA
WP_020850627.1\|4701393_4702053_-	hypothetical protein	NA	NA	NA	NA
WP_162835268.1\|4702157_4702331_-	hypothetical protein	NA	NA	NA	NA
WP_023872355.1\|4702601_4702916_-	hypothetical protein	NA	NA	NA	NA
WP_023872356.1\|4702918_4703209_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_004541313.1\|4703196_4703475_-	CopG family ribbon-helix-helix protein	NA	NA	NA	NA
WP_072619152.1\|4703555_4705577_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_020850841.1\|4705582_4705852_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_004541318.1\|4706342_4706600_+	hypothetical protein	NA	NA	NA	NA
4706730:4706789	attL	NA	NA	NA	NA
WP_080685279.1\|4707773_4708214_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_023594129.1\|4709665_4709890_+	phenol hydroxylase	NA	NA	NA	NA
WP_023872364.1\|4709977_4710973_+	aromatic/alkene monooxygenase hydroxylase subunit beta	NA	NA	NA	NA
WP_011875724.1\|4711012_4711282_+	MmoB/DmpM family protein	NA	NA	NA	NA
WP_023872365.1\|4711304_4712864_+	YHS domain-containing protein	NA	NA	NA	NA
WP_023872366.1\|4712860_4713217_+	phenol hydroxylase subunit P4	NA	NA	NA	NA
WP_023872367.1\|4713295_4714360_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_011516091.1\|4714362_4714719_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_023872369.1\|4714736_4715681_+	catechol 2,3-dioxygenase	NA	NA	NA	NA
WP_023872370.1\|4715702_4716152_+	heme-binding protein	NA	NA	NA	NA
WP_023872371.1\|4716218_4717730_+	2-hydroxymuconic semialdehyde dehydrogenase	NA	NA	NA	NA
WP_023872372.1\|4717732_4718515_+	2-oxopent-4-enoate hydratase	NA	NA	NA	NA
WP_023594121.1\|4718593_4719505_+	acetaldehyde dehydrogenase (acetylating)	E5EQ71	Micromonas_sp._RCC1109_virus	3.0e-33	34.8
WP_023594120.1\|4719524_4720571_+	4-hydroxy-2-oxovalerate aldolase	E5EQ69	Micromonas_sp._RCC1109_virus	3.9e-45	34.7
WP_023594119.1\|4720567_4721356_+	2-oxo-3-hexenedioate decarboxylase	NA	NA	NA	NA
WP_011516083.1\|4721367_4721559_+	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA
WP_023594118.1\|4721616_4723119_+	YHS domain-containing protein	NA	NA	NA	NA
WP_023872373.1\|4723187_4723454_+	Toluene-4-monooxygenase subunit B	NA	NA	NA	NA
WP_023594116.1\|4723509_4723845_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_023594115.1\|4723885_4724200_+	MmoB/DmpM family protein	NA	NA	NA	NA
WP_023594114.1\|4724254_4725241_+	aromatic/alkene monooxygenase hydroxylase subunit beta	NA	NA	NA	NA
WP_023872374.1\|4725340_4726363_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_023872375.1\|4726427_4727033_+	glutathione transferase GstA	NA	NA	NA	NA
WP_023872376.1\|4727094_4728111_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	1.4e-36	31.2
WP_023872378.1\|4728256_4729318_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_023594110.1\|4729396_4730791_+	outer membrane protein transport protein	NA	NA	NA	NA
WP_080685280.1\|4730933_4731173_+	hypothetical protein	NA	NA	NA	NA
WP_023594108.1\|4731272_4732103_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_023594107.1\|4732282_4734127_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_023872379.1\|4734282_4734669_-\|transposase	transposase	NA	NA	NA	NA
WP_144347206.1\|4735104_4736231_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.1e-56	43.5
WP_023872380.1\|4736372_4736615_+	hypothetical protein	NA	NA	NA	NA
WP_023594104.1\|4736750_4737344_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_023594103.1\|4737382_4738831_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_023594101.1\|4739567_4740146_+	hypothetical protein	NA	NA	NA	NA
WP_023594100.1\|4740672_4741326_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
4742233:4743153	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage