CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NC_023031	Acinetobacter baumannii ZW85-1 plasmid ZW85p2, complete sequence	0 crisprs	DEDDh	2
NC_019985	Acinetobacter baumannii ZW85-1 plasmid pAbNDM-1, complete sequence	0 crisprs	NA	0
NC_023028	Acinetobacter baumannii ZW85-1, complete sequence	3 crisprs	cas3,DEDDh,WYL,csa3,RT	3

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

648 : 37403

Salmonella_phage(35.0%)

portal,tail,terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023897570.1\|648_11871_-\|tail	phage-related protein, tail component	A4JX16	Burkholderia_virus	9.9e-155	36.4
WP_000959559.1\|11894_12473_-\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	1.1e-25	36.1
WP_023897571.1\|12466_13216_-	C40 family peptidase	J9Q7R4	Salmonella_phage	1.3e-47	40.5
WP_000504046.1\|13212_13908_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	2.8e-60	48.0
WP_000394499.1\|13907_14234_-\|tail	phage tail protein	D6PGG4	uncultured_phage	9.0e-09	31.1
WP_023897572.1\|14307_19896_-\|tail	prophage LambdaSo, tail length tape measure protein	NA	NA	NA	NA
WP_023897573.1\|19898_20210_-	hypothetical protein	NA	NA	NA	NA
WP_023897574.1\|20251_20605_-	hypothetical protein	NA	NA	NA	NA
WP_023897576.1\|20699_21245_-	hypothetical protein	A0A2H4P707	Pseudomonas_phage	8.2e-39	52.2
WP_023897577.1\|21329_21827_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_023897578.1\|21826_22213_-	hypothetical protein	J9Q6D8	Salmonella_phage	9.3e-13	32.8
WP_023897579.1\|22209_22560_-	hypothetical protein	J9Q7F6	Salmonella_phage	7.4e-09	33.0
WP_023897580.1\|22546_23242_-	hypothetical protein	NA	NA	NA	NA
WP_023897581.1\|23243_24014_-	hypothetical protein	NA	NA	NA	NA
WP_023897582.1\|24020_24515_-	hypothetical protein	L7TKJ9	Rhizobium_phage	1.4e-08	29.3
WP_023897583.1\|24653_25556_-	hypothetical protein	A0A2H4P701	Pseudomonas_phage	9.0e-91	58.3
WP_001131896.1\|25691_26570_-	hypothetical protein	A0A2H4P6Z8	Pseudomonas_phage	7.3e-13	29.4
WP_005113859.1\|26613_28284_-\|portal	phage portal protein	J9Q7R1	Salmonella_phage	8.1e-146	51.9
WP_000764108.1\|28329_29574_-\|terminase	terminase	A0A2H4P6Z9	Pseudomonas_phage	1.3e-151	62.4
WP_000134192.1\|29583_30189_-	hypothetical protein	J9Q6D4	Salmonella_phage	4.0e-18	34.3
WP_000084570.1\|30341_30743_-	hypothetical protein	NA	NA	NA	NA
WP_005113862.1\|30854_31349_-	hypothetical protein	A0A0D4DBK8	Acinetobacter_phage	7.0e-05	33.0
WP_001175928.1\|31317_31641_-	hypothetical protein	NA	NA	NA	NA
WP_000416809.1\|31631_32585_-	hypothetical protein	A0A2H4P6X5	Pseudomonas_phage	4.6e-61	42.1
WP_000184980.1\|32623_33046_-	thioredoxin family protein	NA	NA	NA	NA
WP_000312034.1\|33042_33699_-	ATP-binding cassette domain-containing protein	L7TNS9	Rhizobium_phage	5.9e-60	54.8
WP_001292430.1\|33698_34349_-	ParB N-terminal domain-containing protein	L7TMF9	Rhizobium_phage	3.8e-35	41.9
WP_000131109.1\|34345_34948_-	hypothetical protein	NA	NA	NA	NA
WP_000110211.1\|34976_35615_-	ParB N-terminal domain-containing protein	L7TL04	Rhizobium_phage	1.0e-48	46.1
WP_000521252.1\|35693_37403_+	DEAD/DEAH box helicase	L7TNS5	Rhizobium_phage	4.4e-131	46.2

DBSCAN-SWA_2

67274 : 89228

Pseudomonas_phage(46.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067790.1\|67274_67979_+\|transposase	IS6-like element IS1008 family transposase	A0A077SL39	Escherichia_phage	5.1e-118	84.5
WP_001982274.1\|68006_68174_-	AAA family ATPase	NA	NA	NA	NA
WP_000168233.1\|68170_68536_-	nucleoside triphosphate pyrophosphohydrolase family protein	A0A0S0NAG1	Pseudomonas_phage	1.4e-34	61.9
WP_023897600.1\|68528_68786_-	hypothetical protein	NA	NA	NA	NA
WP_000047654.1\|68816_69044_-	hypothetical protein	NA	NA	NA	NA
WP_023897601.1\|69043_69328_-	hypothetical protein	NA	NA	NA	NA
WP_005134367.1\|69331_70243_-	hypothetical protein	A0A0K2FHE7	Achromobacter_phage	7.7e-66	44.4
WP_023897602.1\|70255_71245_-	ribonucleotide-diphosphate reductase subunit beta	A0A2H4P762	Pseudomonas_phage	2.5e-54	38.4
WP_005127404.1\|71342_73715_-	ribonucleoside-diphosphate reductase subunit alpha	A0A2H4P767	Pseudomonas_phage	8.1e-208	50.7
WP_005127405.1\|73736_74117_-	hypothetical protein	NA	NA	NA	NA
WP_023897603.1\|74190_74793_-	hypothetical protein	J9Q7Z7	Salmonella_phage	1.1e-31	42.8
WP_000192217.1\|74924_75761_-	hypothetical protein	NA	NA	NA	NA
WP_005137873.1\|75852_77793_-	AAA family ATPase	L7TNH6	Rhizobium_phage	2.4e-117	42.5
WP_005137872.1\|77792_78908_-	metallophosphoesterase	A0A2H4P756	Pseudomonas_phage	1.7e-59	38.1
WP_000234226.1\|79250_79631_-	hypothetical protein	NA	NA	NA	NA
WP_000095726.1\|79630_80092_-	hypothetical protein	NA	NA	NA	NA
WP_000680035.1\|80088_80448_-	hypothetical protein	NA	NA	NA	NA
WP_023897604.1\|80535_82734_-	recA protein	J9Q736	Salmonella_phage	3.6e-53	50.7
WP_023897605.1\|82736_83774_-	hypothetical protein	J9Q7S6	Salmonella_phage	1.8e-50	36.9
WP_023897606.1\|83836_84697_-	hypothetical protein	A0A2H4P7I7	Pseudomonas_phage	1.4e-29	31.5
WP_023897607.1\|84839_85928_-	hypothetical protein	A0A2H4P749	Pseudomonas_phage	5.0e-11	35.3
WP_023897609.1\|86017_87283_-	hypothetical protein	A0A2H4P750	Pseudomonas_phage	5.9e-72	38.1
WP_000432852.1\|87279_87855_-	HNH endonuclease	A0A0K0N6H6	Gordonia_phage	1.6e-24	51.3
WP_023897610.1\|87902_89228_-	hypothetical protein	J9Q7Z2	Salmonella_phage	1.2e-112	51.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_023028

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CRISPR-Cas detection and classification

Crispr_ID: NC_023028_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023028_1

1416856-1416936

Orphan

Consensus_repeat	Method
GAGATTGATTATCTCTTACTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_023028_1

>merge|NC_023028|1|1416856-1416936|CRISPRCasFinder
GAGATTGATTATCTCTTACTTTTTCGTAAGACGAACAACATGTTGTGAGTGGATAGTTGAGATTGCTTATCTCTTACTTTT

>NC_023028|1|1|1416856-1416936|CRISPRCasFinder
GAGATTGATTATCTCTTACTTTT	TCGTAAGACGAACAACATGTTGTGAGTGGATAGTT
GAGATTGCTTATCTCTTACTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_023028.1\|WP_001098142.1\|1424926_1425895_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NC_023028.1\|WP_000221680.1\|1413714_1414434_-\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NC_023028.1\|WP_023896517.1\|1417311_1418034_-\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|235919
NC_023028.1\|WP_000365034.1\|1412683_1413337_-\|oxygen-insensitive-NAD(P)H-nitroreductase	unknown	unknown	gnl\|CDD\|182929
NC_023028.1\|WP_002046992.1\|1410110_1411055_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NC_023028.1\|WP_001075435.1\|1420426_1421863_-\|ethanolamine-permease	unknown	unknown	gnl\|CDD\|129986
NC_023028.1\|WP_001269055.1\|1422084_1423596_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143434
NC_023028.1\|WP_023896519.1\|1418198_1419014_-\|ethanolamine-ammonia-lyase-subunit-EutC	unknown	unknown	gnl\|CDD\|235482
NC_023028.1\|WP_002049012.1\|1407685_1408159_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|376771
NC_023028.1\|WP_023896521.1\|1423739_1424930_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225822
NC_023028.1\|WP_000803938.1\|1415127_1416855_+\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	unknown	unknown	gnl\|CDD\|235424
NC_023028.1\|WP_023896523.1\|1427492_1429205_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|350795
NC_023028.1\|WP_002046919.1\|1411787_1412645_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|274527
NC_023028.1\|WP_023896515.1\|1408151_1410104_+\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NC_023028.1\|WP_023896520.1\|1419024_1420410_-\|ethanolamine-ammonia-lyase-subunit-EutB	unknown	unknown	gnl\|CDD\|237897
NC_023028.1\|WP_001983665.1\|1411137_1411656_+\|RNA-chaperone-Hfq	unknown	unknown	gnl\|CDD\|179001
NC_023028.1\|WP_144080732.1\|1429242_1429608_+\|5-carboxymethyl-2-hydroxymuconate-Delta-isomerase	unknown	unknown	gnl\|CDD\|238324
NC_023028.1\|WP_000462393.1\|1413476_1413707_+\|hypothetical-protein	unknown	unknown	unknown
NC_023028.1\|WP_023896522.1\|1426089_1427262_-\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341467
NC_023028.1\|WP_000009660.1\|1414449_1414959_-\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|238901

Protein	Function_ID	Function_description	E-value
NC_023028.1\|WP_001098142.1\|1424926_1425895_-\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	8.5831e-34
NC_023028.1\|WP_000221680.1\|1413714_1414434_-\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	2.34474e-118
NC_023028.1\|WP_023896517.1\|1417311_1418034_-\|glutamine-amidotransferase	gnl\|CDD\|235919	PRK07053, PRK07053, glutamine amidotransferase; Provisional.	3.10594e-143
NC_023028.1\|WP_000365034.1\|1412683_1413337_-\|oxygen-insensitive-NAD(P)H-nitroreductase	gnl\|CDD\|182929	PRK11053, PRK11053, oxygen-insensitive NAD(P)H nitroreductase.	3.13091e-145
NC_023028.1\|WP_002046992.1\|1410110_1411055_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	1.84384e-139
NC_023028.1\|WP_001075435.1\|1420426_1421863_-\|ethanolamine-permease	gnl\|CDD\|129986	TIGR00908, putative_ethanolamine_permease, ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily. [Transport and binding proteins, Amino acids, peptides and amines].	3.43375e-170
NC_023028.1\|WP_001269055.1\|1422084_1423596_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143434	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.	0
NC_023028.1\|WP_023896519.1\|1418198_1419014_-\|ethanolamine-ammonia-lyase-subunit-EutC	gnl\|CDD\|235482	PRK05465, PRK05465, ethanolamine ammonia-lyase subunit EutC.	3.11705e-118
NC_023028.1\|WP_002049012.1\|1407685_1408159_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|376771	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE. This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A).	3.69181e-56
NC_023028.1\|WP_023896521.1\|1423739_1424930_+\|transcriptional-regulator	gnl\|CDD\|225822	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription].	5.4231e-10
NC_023028.1\|WP_000803938.1\|1415127_1416855_+\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	gnl\|CDD\|235424	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.	0
NC_023028.1\|WP_023896523.1\|1427492_1429205_+\|AAA-family-ATPase	gnl\|CDD\|350795	cd18037, DEXSc_Pif1_like, DEAD-box helicase domain of Pif1. Pif1 and other members of this family are RecD-like helicases involved in maintaining genome stability through unwinding double-stranded DNAs (dsDNAs), DNA/RNA hybrids, and G quadruplex (G4) structures. The members of Pif1 helicase subfamily studied so far all appear to contribute to telomere maintenance. Pif1 is a member of the DEAD-like helicases superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.16367e-79
NC_023028.1\|WP_002046919.1\|1411787_1412645_+\|EamA-family-transporter	gnl\|CDD\|274527	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.	1.14863e-06
NC_023028.1\|WP_023896515.1\|1408151_1410104_+\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NC_023028.1\|WP_023896520.1\|1419024_1420410_-\|ethanolamine-ammonia-lyase-subunit-EutB	gnl\|CDD\|237897	PRK15067, PRK15067, ethanolamine ammonia-lyase subunit EutB.	0
NC_023028.1\|WP_001983665.1\|1411137_1411656_+\|RNA-chaperone-Hfq	gnl\|CDD\|179001	PRK00395, hfq, RNA-binding protein Hfq; Provisional.	8.16909e-47
NC_023028.1\|WP_144080732.1\|1429242_1429608_+\|5-carboxymethyl-2-hydroxymuconate-Delta-isomerase	gnl\|CDD\|238324	cd00580, CHMI, 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) is a trimeric enzyme catalyzing the isomerization of the unsaturated ketone 5-(carboxymethyl)-2-hydroxymuconate to 5-(carboxymethyl)-2-oxo-3-hexene-1,6-dionate. This is one step in the homoprotocatechuate pathway, one of the microbial meta-fission pathways that degrade aromatic carbon sources to citric acid cycle intermediates. Despite the structural similarity of CHMI with 4-oxalocrotonate tautomerase (4-OT) and macrophage migration inhibitory factor (MIF), there is no significant sequence similarity among these protein families, and therefore, they are not combined in one hierarchy.	9.42868e-37
NC_023028.1\|WP_023896522.1\|1426089_1427262_-\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341467	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase. This family includes 1,3-propanediol (1,3-PD) dehydrogenase, a key enzyme in the microbial production of 1,3-PD that has been previously characterized as the product of dhaT gene in Klebsiella pneumoniae. 1,3-PD dehydrogenase is a member of the family III metal-dependent polyol dehydrogenases, which are shown to require a divalent metal ion for catalysis. However, some members of this family showed a dependence on Fe(2+) or Zn(2+) for activity.	0
NC_023028.1\|WP_000009660.1\|1414449_1414959_-\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|238901	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.	1.99356e-78

>NC_023028.1|WP_000803938.1|1415127_1416855_+|glutamine--tRNA-ligase/YqeY-domain-fusion-protein
MKPNDVVSNLPNNPTPNTHASVDSAQQEQQAGLDFVRQVITDDLAAGRAKQIVTRFPPEPNGYLHIGHVKAICLNFGVAEEFNGLCNLRFDDTNPDAEEQEYVDGIANDVKWLGFSWNGEPRYASGYFDQLYAWAIQLIEQGDAYVDLQSPEEIKLNRGSFVEPGKNSPYRDASVEENLARFEKMRNGELKEGEAVLRAKIDMASPNVHMRDPILYRVLHSEHHQTGDKWKIYPMYDYAHPLSDAIEGITHSLCTLEFQDHRPFYDWIVEKVKSKAVPHQYESSRLNVDYTITSKRKLRKLVEGGYVNGWDDPRMPTVVGMRRRGFTPEGLRDFCKRVGVSKTDGIVDVAMLEFCIRQSLENTAARGMAVLNPLKVTLTNLPEDLDLTHARHPNVDMGERVIPLTKEIYIDRKDFEEVPPKGFKRLIPDGEVRLRHAYVIKCDEVIKDANGEVVELKCSIDPDTLGKNPEGRKVKGVIHWVSATKGIPAEVRIYDRLFTEADPETGDDFLANLNPDSLKVVQAVIEPALAQAKPEDRFQFEREGYFVADQYDHTPEKPVFNRVLDLKDSFKPEKK
>NC_023028.1|WP_000009660.1|1414449_1414959_-|peptidyl-prolyl-cis-trans-isomerase
MSFPQVELNTNKGRIVLELNTEKAPKTAANFLEYVRDGFYDGVIFHRVIDGFMIQGGGFDENFKEKATRDAIENEADNGLSNDVGTIAMARTQAPHSASAQFFINVKNNSFLNHTSKTAQGWGYAVFGKVVEGMDVVEAIKGVRTGNRGYHADVPLENVVIESAKIISE
>NC_023028.1|WP_000221680.1|1413714_1414434_-|UDP-2,3-diacylglucosamine-diphosphatase
MTYLFISDLHLSPEHPRLVRGFLDLLVHYQNKQTQLYILGDWFNAWIGDDYSAPWLEEIVEALKVFNQKGNRVYFQVGNRDFALNQVFLDKFNGVLLPDIYYLNIAGHQYRLEHGDALCTDDISYQRFKKIIRNPFLVAFLRRTPLSFRTKLVNGFRKRSHSDKQQKSYEIMDVNEQAVLSALTDVDILIHGHTHRPAIHQLQHKQRIVLGDWREDQAYILEIDPSSNTQQLELIVWNY
>NC_023028.1|WP_000462393.1|1413476_1413707_+|hypothetical-protein
MFELIPINLKNKLREIRIIKAFLIFAFVLCLLILYIEYQKYAHINWKFVYITCLCMIWDFDLNKKIKELKVQIKSD
>NC_023028.1|WP_000365034.1|1412683_1413337_-|oxygen-insensitive-NAD(P)H-nitroreductase
MDLLNTVKSRYTTKAYDPEKKIPQEKFNKLLEILRFTPSSVNIQPWHFLVADNPTAKERIAKALTGRYAYNAPKVLESSHTLVFCTRTDISPEYLNQLLEQDDLSGRFKDEKAKLGQKDTRHGYVEFYRNEQKNLFGWMENQTFIALGQLLFAAGLEGIDATPMGGFDEDVLNEEFGLKEKGLRSSVIVSLGYRSENDFNAKLPKSRLPDEVIFTHL
>NC_023028.1|WP_002046919.1|1411787_1412645_+|EamA-family-transporter
MVLIFAAALCSVLVSVLLKNLKKKGYQPMQMIAWNYASASLLCYLWFKPDIQHISIQHTPWWLIVALGVILPSIFLCLAKSLEYAGIVKTEIAQRLSVVLSLLAAYFFFQEQFNSLKLLGIGLGIFAVLLILLGHFNESSRSQSKKAIFALMSVWFGYAAVDILLKYTSSLGLQFTLTLNLIFITAFVLSIIYLIFQKNSAWHFKNTFAGLMLGVLNFSNIALYVKAHILLKDSPAIVFASMNILVVLLGIVCGVVLYKEKLKLPTILGIILGISGLMSLALAMK
>NC_023028.1|WP_001983665.1|1411137_1411656_+|RNA-chaperone-Hfq
MELKMSKGQTLQDPFLNSLRKERIPVSIFLVNGIKLQGHIESFDQYVVLLKNTVSQMVYKHAISTVVPARNPRPAGAQGAGFPAQGGSQGGFGGQGAGFGGAQGAGFGGQGGFGGQGGFGGQGGFGGQGGFGGQGGFGGQGGFGGQGGFGGHQGGFDNDSKFEDGQDDENNR
>NC_023028.1|WP_002046992.1|1410110_1411055_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MSNQLPVINLMGPTASGKTALACELYERGNFELISVDSALVYKDMDIGTAKPTREEQELYPHHLIDIITPLEVYSAAQFVEDACALIDEMHSRGKTPILVGGTMLYFKALLEGLSSNLPSADTNVRAAIEEKAANEGWQAVYDELVAVDPAAGVKFKVSDKQRIIRALEVYRITGQPITKLQAEQPKNVPYRYTFHNYALLPDRLELHQRIEQRLSKMWDIGFLSEVESLIEKYDLDENLPSMRSVGYRQALEFLLKSDMSLKKKQEMEDKALFATRQLAKRQYTWLRSLQEIHDFKTYLTIKQAKEDLRNSYG
>NC_023028.1|WP_023896515.1|1408151_1410104_+|DNA-mismatch-repair-endonuclease-MutL
MTDEKLTQRRIHTLDAALANQIAAGEVIERPSSVVKELLENSIDAGATELIVRIAQGGSTLIEIIDNGHGIHPDDLPLAVMRHATSKIKTAEDLHAIVSLGFRGEALASIAAVSRLTLTSSQDESGIGHQVEVNGTAFDHQQVQAVAAQKGTHIRVQDLFFNVPARRKFLKKPTTEFGHIEEIVRRLALTHFDIRFVLEHNDNIRINLPIADSGELRFQRVQQLLGQQFVQNAYWIDAESINMRLSGWLGHPSDARAQADLQYVYVNGRIVKDKTISHALRMAYDGILHGHQHSSYLLFLEVDPENIDVNVHPTKHEIRFLNQREVHEFVRHYAKETLAQFQTASADLAQAMKVDDIQNLSVQPQPKYQEQFTLHRTAQAADTAVDKPNGYQPSTELLTDFSNSRPQAVHYAEQTPKYNGSAQLNNALKTYLAPLRDQPANFSVDENIEPVAKVDEFPLGIAIAQLHGIYILAQNTEGLIIVDMHAAHERILLQQMKNAWDKPEFWTSQQLLIPKVISISRMQAVRVEDLKPQLERLGLEIDLYGDEQVIVRGVPAILQKADFENLIPELLNDLDPNDEAQGLLQKRDELLAGMACHGAVRAHRQLSLSEMNALLRQMEQTEFASQCNHGRPTWRAFPLSQLDKLFARGE
>NC_023028.1|WP_002049012.1|1407685_1408159_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MSYSLKMVLNHEEDTQRLAQALAQHVQAGVIYLIGDLGAGKTTLTRYFLQALGHKGSVKSPTYTLVEPYKINNKEIFHFDLYRLNDPYELELMGIRDYLDIQDALFLFEWPSKGGDEIPEADIVIDIQKSDDELNRFVTLTLPTEHLYQTLQEQLHD
>NC_023028.1|WP_023896517.1|1417311_1418034_-|glutamine-amidotransferase
MNTTNAFPKTIYAIQHLAFEDLGSLEDVFYQLGFRVRYFEAGVDDLTPAFTHDGLTIILGGPIGVYETEDYPFLKDEIALLKQRLAADKPTLGICLGAQLIAHALGAKVYAGHQKEIGWGALSLSLRPNQVLSPLLNNVHVLHWHGDTFDLPENAVLLASSEIYTNQAFEVGNNILALQFHIETTEENFEKWLIGHTCELRNAKISIPKLREENLQYAQALEHAAFEVIQKFLKQIGYSG
>NC_023028.1|WP_023896519.1|1418198_1419014_-|ethanolamine-ammonia-lyase-subunit-EutC
MKLNRDIQYPSSTHQDQWEKLKQFTDARIALGRAGCSIPTRALLEFQLSHAQAKDAVYQDMDVSYLSEQLAQRQLQSLHVQSNAPNKEIYLKRPDLGRQLSNPSKDTLIKKYAENPHQYDVCIVVGDGLSARAIEANAIAFITALSEQIQQENWSLAPIVLATGSRVALGDEVAEIFKASMLVMLIGERPGLSSPDSMGIYYTWNAYSGCLDSKRNCISNVRSAGLSIPVAVQRLMALMRKSKQLGFSGVNLKDEHQLSNIDHNENAKLLF
>NC_023028.1|WP_023896520.1|1419024_1420410_-|ethanolamine-ammonia-lyase-subunit-EutB
MSYRNIVANQQYHFADLKTLMAKATPLRSGDELAGVAARDATEHVAAQMTLADVPLKTFLNEVVIDYETDEITRLIIDEHDLAAFAPISHFTVGDFRNWLLGEDATAESLKALASGLTPEMVAAVSKIMRNQDLIYVASKCEVVTQFRNTIGLKGHLSTRLQPNHPTDDVLGISASILDGLMYGNGDAVIGINPATDNLYNLSELLKLLDHVIQEYQIPTQSCVLTHISSGIQLAEKNVPIDLMFQSIAGTQLANDGFGISLGLLQEGYEATLSLKRGTIGQNVMYFETGQGSALSSNAHHGVDQQTLETRAYAVARKYNPLLVNTVVGFIGPEYLFNGKQIIRAGLEDHFCGKLLGVPMGCDICYTNHADADQNDMDVLLTLFGAAGINFIMGIPGSDDVMLNYQTTSFHDALYLRQLLGLKPAPEFSAWLEQQGIFKQQNSQICWADHMPDQFSRLLMN
>NC_023028.1|WP_001075435.1|1420426_1421863_-|ethanolamine-permease
MNQPETASVISSSAEVSSAEYFAQRQLKQGTVGWLLLIGLGVAYVISGDFAGWNFGIAQGGWGGMFIATALAALMYLCLCLSMSEMSTMMPTAGGGYSFARAAFGPFGGYLTGTAILIEYAIAPAAIAVFIGGYCESLFGINGWMIYLACYAIFMGIHLKGAGEALKIMFAITLVAAVALVVFIGAMIPHFNAQNLFDIPVSTGVGASLFLPHGYLGIWAAVPFAIWFFLAVEGVPLAAEEAKDPAKSLPRGLIGAMLILTAFAMLILFLGAGAAGASTLQNSGAPLVDALVKVYGTNTWLATFVNFVGLAGLIASFFSIIYAYSRQIFALSRAGYLPTSLSLTNKNKAPYLAIIIPGIIGFLLSLTKEGDSLILIAVFGATISYVLILLSHIKLRLSKPDMPRPYKTPGGIITSSIALVLAVAAVVAGFVVNPKVWFIAAGIYVVFIAYFLFYSRYHLVKGTPEEEFANIKAAEQEL
>NC_023028.1|WP_001269055.1|1422084_1423596_-|aldehyde-dehydrogenase-family-protein
MRYIDPNQPGSKVQFKSQYENFIGGEWVAPLKGEYFDNVSPVDGKAFTRIPRSSAEDIELALDAAHKAKASWNKSSPTTRSNILLKIADRLEANLEMLAVAETWDNGKAVRETLAADLPLAIDHFRYFAGCIRAQEGGISEIDEDTIAYHFHEPLGVVGQIIPWNFPILMAAWKLAPALAAGNCVVIKPAEQTPVGILLVAELIQDILPPGVLNIVNGFGAEVGRPLATSPRIAKIAFTGSTQTGQMVMQYATENIIPVTLELGGKSPNLFFEDIMDKEDDFLEKTLEGFAMFALNQGEVCTCPSRALVQESIADQFLELAVERVKRIKTGHPLDTETMIGAQASLQQQEKILRCINTGREEGAELLLGGSGRKEVGDGFYVDPTIFKGHNSMQVFQEEIFGPVLAVTTFKDFDDAIKIANDTMYGLGAGVWSRSAHISYRAGRAIEAGRVWTNCYNIYPAHAAFGGYKKSGIGRENHKMMLDHYQQTKNLLVSYSTKPMGFF
>NC_023028.1|WP_023896521.1|1423739_1424930_+|transcriptional-regulator
MFTKKDLLQQRMLIDQLRTQNSLSPQNAAKLGQSIASSWERSASAAIPKERFAAPLLEKKSASQNALDLALSQCADDLRHIAEQSSMVIAVGDIGSTIIWTASSAQMQSAAERVHFVQGGQWREEFVGTNALALSLKTQQSSCVFSNEHYMESIHDWVCYAAPIIDPYSKQTLGVVDLSTTWKNHNTLGILAAERCASIIQSALLEQQRQHLHIRAFSTPQVKFNGKSLLLTPRQIEILTILALCPHGLTLEHLYQALYGERKVSMGTLKAEMSQLRDILGGLLGSRPYRLLVHVEADFLQAEQALDAGYVASALQLYTGVFLAKTESPFLCAWRDCLESRLSDAIFKTQETDLLLKHLAHFPEAIDAVERLMELLPSEHPAHQLLVKYIDSPKLS
>NC_023028.1|WP_001098142.1|1424926_1425895_-|alpha/beta-hydrolase
MNTSTAKHNYAPDILGAGYEQLTLNFPDDYEGKVVATLVRKKATQPTQKAVLYIHGFLDYFFQTEMAEQFNAHGYDFYALDLRKYGRSKLPHQIFYNVLDLNEYDAEITQALEIIGQEKHTQVLLAGHSTGGLTATLYAAHHPDHPLIKALWANSPFYDFNLSLVEKKFGIPMLSRVGKYLPKVKFPSQLNKWYTTSLHKQLKGEWDFNLDWKPTSAPTVQLSFVHAIHTAQKEIHRGVKLNIPALIMHSHQTKNPRKWGPDATQSDVILDVKDIAKFGKKMKGDVSVVSIHNGLHDLVLSAQPVREQVYQQLFQWLDQKVT
>NC_023028.1|WP_023896522.1|1426089_1427262_-|iron-containing-alcohol-dehydrogenase
MAFKNIADQTNGFYIPCVSLFGPGCAKEIGTKAQNLGAKKALIVTDEGLFKFGVADLIASYLTEAGVASHIFPGAEPNPTDINVHNGVNAYNENGCDFIVSLGGGSSHDCAKGIGLVTAGGGHIRDYEGIDKSKVPMTPLIAVNTTAGTASEMTRFCIITNTDTHVKMAIVDWRCTPLIAIDDPKLMIAKPAGLTAATGMDALTHAVEAYVSTAANPITDACAEKAITMISQWLQPAVANGENIEARDAMSYAQYLAGMAFNNASLGYVHAMAHQLGGFYNLPHGVCNAILLPHVCEFNLIACPDRYAKIAELMGVNTHSLTVTEAAYAAIDAIRKLSSSIGIPSGLTELGVKTEDLAVMAENAQKDACMLTNPRKANHAQVVEIFKAAL
>NC_023028.1|WP_023896523.1|1427492_1429205_+|AAA-family-ATPase
MKQETALKLLKAGENVFLTGSAGAGKTYTLNQYIHYLKARKVPVAITASTGIAATHMNGMTIHTWAGIGIKDHLTDDDLKRMKERKYLKEHLENAQVLVIDEISMLHAKQLNLVNQVLKYFKESDEAFGGIQVIVAGDFFQLPPVGRNGEANRDKFCFMSDAWVEAKFRVCYLTEQHRQDDEILNQILNAIRSQNIQTEHLQALHQSRTHDIGETFTRLYTHNMDVDNINYQHLNEIDNEGHQFNAVLDGNEKLLETLKSSVRAPEELTLKKYAKVMFVKNNFDMGYINGSLGEVIGFEEDDENGLLPKVKLTDGTTLLVAPETWSIENEAGKVIASFQQIPLRLAWAITIHKSQGMTLEAAEINLMHTFEKGQGYVALSRLKSLTGLKLLGFNEQALELDSLAVKADRRFQELSKEAEDNFANVDLTAQHKAFIRHCGGTLNETEISRNEKKLARGEKQNYASATLDETRALFEEGYEIEDIAHERGLTPATIINHLARLHKEQKLDISVAHPGEEVVEEVRKIYKKLKKRQNPDHFSDDGSIKLRPIVEATSPRMGYDQVRLALLFIE
>NC_023028.1|WP_144080732.1|1429242_1429608_+|5-carboxymethyl-2-hydroxymuconate-Delta-isomerase
MAMPHVVVDYSDNLTGLNAKQLLEEINTTLIETELFSPEDIKSRARRDEVFLIGLGVDQAYIHVKAYILSGRTTEQKQLVGEQLLAVLSNKKYLPQEFNKEIQLCVEIIDMPRDDYFKQVV

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Crispr_ID: NC_023028_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023028_2

1588021-1588174

Orphan

Consensus_repeat	Method
GCGCAAGATGAACATAGTTATGGTTAATTTATATTGAACTTTTTACAGGTATAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_023028_2

>merge|NC_023028|2|1588021-1588174|CRISPRCasFinder
GCGCAAGATGAACATAGTTATGGTTAATTTATATTGAACTTTTTACAGGTATAAAAAAAACGCCACCTGAGCAAGACGAAGCGGCTAAAGCTTTGGCGAGGCGCAAGATGAACATAGTTATGGTTAATTTATATTGAACTTTTTACAGGCATAA

>NC_023028|2|2|1588021-1588174|CRISPRCasFinder
GCGCAAGATGAACATAGTTATGGTTAATTTATATTGAACTTTTTACAGGTATAA	AAAAAACGCCACCTGAGCAAGACGAAGCGGCTAAAGCTTTGGCGAG
GCGCAAGATGAACATAGTTATGGTTAATTTATATTGAACTTTTTACAGGCATAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_023028.1\|WP_023896592.1\|1589109_1589448_+\|hypothetical-protein	unknown	unknown	unknown
NC_023028.1\|WP_023896594.1\|1592813_1593959_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|129307
NC_023028.1\|WP_001187342.1\|1589555_1590662_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NC_023028.1\|WP_000616034.1\|1588200_1588434_-\|hypothetical-protein	unknown	unknown	unknown
NC_023028.1\|WP_000270276.1\|1592698_1592800_-\|cytochrome-bd-I-oxidase-subunit-CydX	unknown	unknown	gnl\|CDD\|369733
NC_023028.1\|WP_000121842.1\|1584621_1584945_+\|hypothetical-protein	unknown	unknown	unknown
NC_023028.1\|WP_000949688.1\|1579857_1580103_-\|hypothetical-protein	unknown	unknown	unknown
NC_023028.1\|WP_000175347.1\|1591669_1592341_+\|DUF2057-domain-containing-protein	unknown	unknown	gnl\|CDD\|378258
NC_023028.1\|WP_085916945.1\|1592398_1592698_-\|cyd-operon-YbgE-family-protein	unknown	unknown	gnl\|CDD\|370577
NC_023028.1\|WP_000838063.1\|1580362_1580782_-\|heme-binding-protein	unknown	unknown	gnl\|CDD\|225734
NC_023028.1\|WP_023896591.1\|1584991_1585333_-\|Grx4-family-monothiol-glutaredoxin	unknown	unknown	gnl\|CDD\|188046
NC_023028.1\|WP_000156920.1\|1586817_1587249_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341391
NC_023028.1\|WP_001186685.1\|1580973_1582275_-\|branched-chain-amino-acid-transport-system-II-carrier-protein	unknown	unknown	gnl\|CDD\|185331
NC_023028.1\|WP_000102943.1\|1590849_1591446_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|226090
NC_023028.1\|WP_001202778.1\|1582627_1583422_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NC_023028.1\|WP_000185571.1\|1588649_1589009_+\|hypothetical-protein	unknown	unknown	unknown
NC_023028.1\|WP_000129946.1\|1585560_1586769_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|235056
NC_023028.1\|WP_077163451.1\|1587389_1587722_-\|DUF2750-domain-containing-protein	unknown	unknown	gnl\|CDD\|378546
NC_023028.1\|WP_000954523.1\|1583475_1584378_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176162
NC_023028.1\|WP_023896595.1\|1593955_1595542_-\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|185052

Protein	Function_ID	Function_description	E-value
NC_023028.1\|WP_023896594.1\|1592813_1593959_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|129307	TIGR00203, ubiquinol_oxidase_subunit_2, cytochrome d oxidase, subunit II (cydB). part of a two component cytochrome D terminal complex. Terminal reaction in the aerobic respiratory chain. [Energy metabolism, Electron transport].	2.2855e-149
NC_023028.1\|WP_001187342.1\|1589555_1590662_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	8.49853e-180
NC_023028.1\|WP_000270276.1\|1592698_1592800_-\|cytochrome-bd-I-oxidase-subunit-CydX	gnl\|CDD\|369733	pfam08173, YbgT_YccB, Membrane bound YbgT-like protein. This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in E. coli. Members have a consensus motif (MWYFXW) which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to Proteobacteria.	2.3152e-06
NC_023028.1\|WP_000954523.1\|1583475_1584378_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176162	cd08473, PBP2_CrgA_like_4, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 4. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.44498e-97
NC_023028.1\|WP_085916945.1\|1592398_1592698_-\|cyd-operon-YbgE-family-protein	gnl\|CDD\|370577	pfam09600, Cyd_oper_YbgE, Cyd operon protein YbgE (Cyd_oper_YbgE). This entry describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria.	3.65946e-19
NC_023028.1\|WP_000838063.1\|1580362_1580782_-\|heme-binding-protein	gnl\|CDD\|225734	COG3193, GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only].	5.66012e-31
NC_023028.1\|WP_023896591.1\|1584991_1585333_-\|Grx4-family-monothiol-glutaredoxin	gnl\|CDD\|188046	TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. [Energy metabolism, Electron transport].	5.43237e-64
NC_023028.1\|WP_000156920.1\|1586817_1587249_-\|CBS-domain-containing-protein	gnl\|CDD\|341391	cd04623, CBS_pair_bac_euk, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and eukaryotes. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.93176e-56
NC_023028.1\|WP_001186685.1\|1580973_1582275_-\|branched-chain-amino-acid-transport-system-II-carrier-protein	gnl\|CDD\|185331	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ.	7.47656e-171
NC_023028.1\|WP_000102943.1\|1590849_1591446_+\|nitroreductase-family-protein	gnl\|CDD\|226090	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only].	1.21707e-108
NC_023028.1\|WP_001202778.1\|1582627_1583422_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	5.65907e-151
NC_023028.1\|WP_000175347.1\|1591669_1592341_+\|DUF2057-domain-containing-protein	gnl\|CDD\|378258	pfam09829, DUF2057, Uncharacterized protein conserved in bacteria (DUF2057). This domain, found in various prokaryotic proteins, has no known function.	2.01647e-28
NC_023028.1\|WP_077163451.1\|1587389_1587722_-\|DUF2750-domain-containing-protein	gnl\|CDD\|378546	pfam11042, DUF2750, Protein of unknown function (DUF2750). This family is conserved in Proteobacteria. The function is not known.	1.42209e-20
NC_023028.1\|WP_000129946.1\|1585560_1586769_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|235056	PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.	0
NC_023028.1\|WP_023896595.1\|1593955_1595542_-\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|185052	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA.	0

>NC_023028.1|WP_077163451.1|1587389_1587722_-|DUF2750-domain-containing-protein
MIKIYILRTMMYCGVLWGLFDEGWAIKSDQEDFIFPFWLNGVQAHRYAKTHWPNYKPRKITPKDFHESLLPTLTRLKVTPALFNSSHRKLKLSTQQMHHFFFNHPKWQVA
>NC_023028.1|WP_000156920.1|1586817_1587249_-|CBS-domain-containing-protein
MTIVAQVIKNKSEQAIFTISPEATVLEAITIMAEKGIGALVVAEGEQVVGILSERDYTRKVTLMERSSYSTTVAEIMTAKVITVGLNNTVEECLQLMTDRHLRHLPVLDNGKLVGFISIGDLVKAAMEDQKVLIEQLKQYISG
>NC_023028.1|WP_000129946.1|1585560_1586769_+|aspartate-aminotransferase-family-protein
MTDITLAPVQPDQPTHLMATYGRQAISFVRGRGAYLYTQDGTEYLDALTGIAVCGLGHAHPAIAEAIAEQAATLVHTSNLFEIPWQTAAAQKLAEVSGMEEIFFSNSGAESNEGAIKIARKFGTQQGISLPKIIVAEQSFHGRTLATLSATGNKKVQDGFAPLVEGFIRVPFGDIEAIQEAALQHPDIVAILIEPIQGEGGINTAPQGFSYLEEVRQICNQHNWLMMLDEIQTGNGRTGKYFAYQHTNIIPDVLTTAKGLGNGFPVGAVMTQGKAVGLLGPGSHGSTYGGTVLGSRVVYTVIDTIQKENAVENAAVVGNYIVDQLRAQLSDKNVQVRGFGMMIGIQLPKDCAELVAIARDEYKLIINVTAGSVVRLLPPINMTQAQADILLERLVALITNYL
>NC_023028.1|WP_023896591.1|1584991_1585333_-|Grx4-family-monothiol-glutaredoxin
MTEQARDTEALIRDQIAKHPVLPYMKGTPQFPQCGFSARAVEALSQIGRPFAYVNILKNPDIRATLPKIANWPTFPQLWVNGELIGGSDIMLEMFQNGELKPLIEQYSAAPEA
>NC_023028.1|WP_000121842.1|1584621_1584945_+|hypothetical-protein
MSYQLVELENATANIICPICKLAVIDWTQEQYVQPCEHTVFIAMDLGFEFVADRFEEVMKQNVDELHEDPNMNIFDAITTTPYKNLSILKADLGVDGLFRYVGISDC
>NC_023028.1|WP_000954523.1|1583475_1584378_-|LysR-family-transcriptional-regulator
MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYNLEENLGVRLIQRSSRHFAVTDIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKKYPEIRLQLIVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGNIKSPDELSDHRILSLSEEHLDQQFILHGPDNQLKKVKVSPTIMGTNIYMLAQLASQNCGIALLPDTAAEDFVKSGQLVQILPDWKAAHGIFHAVYPSRRGLLPAVRVFIDYLVEHLSEHP
>NC_023028.1|WP_001202778.1|1582627_1583422_+|type-I-methionyl-aminopeptidase
MRASTVTIKTEQDLEKLRVSGRLAAQVLEMIGEYVKPGVTTEYLDNICNDYIVNTLKVIPANVGYHGFTKTICTSVNEVVCHGIPSQNKILKDGDIINIDVAIIKDGYFGDTSRMYYVGNVNPHAKKLVETTYEAMVAGIHAVKPGATLGDIGYAIQSVAHREGYSIVREYCGHGIGKVYHEQPNILHYGQRGQGLVLKKGMVFTIEPMVNAGKPQVKELSDGWTVITQDHSLSAQWEHMVAVTDTGFELLTPWPEGVGNYPEI
>NC_023028.1|WP_001186685.1|1580973_1582275_-|branched-chain-amino-acid-transport-system-II-carrier-protein
MQQLRTGDIIALGFMTFALFIGAGNIIFPPIVAQQAGDHVWLAAIGFLITAVGLPVITIMALSRMQGSIEIISSPLGRIASLILTVVCYLSVGPLFATPRTATVSYEIGFSSYFGTSSSSLLIYSAIYFAFVTVVSLYPNKLLDTVGHVLAPLKIIALAILGIAAVMIPAGYVPAPINHYVNSPVSEGFVNGYLTMDTLGALVFGIVIIQAIYSRGVTDNKLVTKYAIIASLISGVGLTLVYLSLFKLGLGSHEVAPNAANGAVILHAYVQHAFGNMGSLFLTGLIFLACMVTAIGLTCACAEYFAQLTKLPYKLLVFILVGFSFIISNLGLTKLIAVSVPVLSAIYPPAIVVIMLSFFWKFWHKPSFIVGSVTSIALIFGIIDGLKVAGFGDYLPNFLQHLPLNEQNLAWLIPSLVVLVVTTLIDKVKHKSI
>NC_023028.1|WP_000838063.1|1580362_1580782_-|heme-binding-protein
MKSKYYLTLADAEFLMEEAQKYAIEHNFKVSIAIVDETSSLLLMKRLDGASPLTTHLCLEKAKCSSMSGRPSKFYEELLQNGRLGFLSMPSAKGMLEGGKAIIYEGQILGAIGVSGVQSFEDAEIAQHAIDVFLKKQSS
>NC_023028.1|WP_000949688.1|1579857_1580103_-|hypothetical-protein
MLSLHFNKQVFINTLNSKDSVVYGVTTLALMLTLLFQGMIKGNLKPEYFMYAMVVSFVFCVWAFVDHKMRKLAKRRLSQQK
>NC_023028.1|WP_000616034.1|1588200_1588434_-|hypothetical-protein
MIQRISHHDLEHVYATAVNTIQSQMNFQDAVAQLEEVARAGHGKAALFLAELYYQGFRVERDSMKAQYWQKLATMQA
>NC_023028.1|WP_000185571.1|1588649_1589009_+|hypothetical-protein
MTNTIDGFVFDNPPKEEQIIELAHYHRKLLDEAIFHQEIHLGDYCLAQRKRVFDYARQLDPNQKAWFYQVYDGELRKIADEDELHPADAEEGLSIFAMLLVLVIIAAILYFSVIRSLMG
>NC_023028.1|WP_023896592.1|1589109_1589448_+|hypothetical-protein
MLTFKENFLKLKSELKSELKADQCFNLVVIIIIGCIFMLSYLALLRPVNSEQYQRIVQLSRQATYPRTQDMAELIMAQSEIHRAEYLKLMHAYQFEHDHIKQYPALAQEDTQ
>NC_023028.1|WP_001187342.1|1589555_1590662_+|signal-recognition-particle-docking-protein-FtsY
MQQQSNMQNKFLIDAEIGDDDVTLPNLPAIDVPIVESPVKQEVKAEEVVEAAPSTEPEQPKSGFFGRMKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFESARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQEFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALFETEK
>NC_023028.1|WP_000102943.1|1590849_1591446_+|nitroreductase-family-protein
MSTFLDKIKNRRTIYAIGKNVALDRTKIEETIREAVKHSPSAFNSQSSRVVTLYGESHAKFWNLVREALRKIVPADAFAGTNAKIDSFVAGVGTVLFYEDQAVVKSLQEQFELYADNFPVWSEHSSAIAQFATWTALSELGLGASLQHYNPIVDADAAEAFDVPATWKLRAQLVFGSVEAPAGEKAFISDEDRFKTFN
>NC_023028.1|WP_000175347.1|1591669_1592341_+|DUF2057-domain-containing-protein
MTLRLSVAAMGLLLSGSVFSAVTITAPEEIVILAVNGQEVNSGLFRSSKNNYKVDAGETSLSVRYQEYFEHLSGEHDIVKSGVVTIQTPALKDGQTYKLAMVDAPKQFEQAKKYAEQPTVALYNSNNELIVQQTGANNEARPWFASGLLGKVTDFTTKSSKQQPDAVYAAAKPTTTQANAPVATTMPATGVAQTNDQRLAEIWKKSSKAERQKFMAWLAEQSN
>NC_023028.1|WP_085916945.1|1592398_1592698_-|cyd-operon-YbgE-family-protein
MMATAMTASNQRKAQAFAMAISFLLALPLAVILLVHPSLMLDANGHYNHSQLMLVMVGISGGFIYGVGFVPHFWLWKWLFSPWIAWPLMLLGYYIWFLT
>NC_023028.1|WP_000270276.1|1592698_1592800_-|cytochrome-bd-I-oxidase-subunit-CydX
MWYFAWILGILMACFAGVLSALYIEHHQNLDEE
>NC_023028.1|WP_023896594.1|1592813_1593959_-|cytochrome-d-ubiquinol-oxidase-subunit-II
MIEYELLKIIWWVLVGVLLIGFALTDGFDMGSMALMPFVGKTDNERRAAINTIAPHWDGNQVWFITAGGALFAAWPMVYSVAFSGMYWALLLVLFALFLRPVGFDYRSKLENTQWRNSWDWGLCIGGAVPALVFGVAFGNLFLGIPFNLDSTLRSEYSGSFFALLNPFALICGIVSLSMLCAHGGAWLMLRTDGALKQRSAKATQIMAAIFLVCFLVIGAWLYFGQVPGYSYAAAVDPNAALNPLAKEVVTNNNPGWMNNYSSYPITKVAPVLAILGAIIAFFTASKAKAGLSFAGTSLMIVGAILTAGFALFPFLLPSSVNPNSSLTMWDAVSSHRTLGVMTVAACIFVPVILIYTSWSYYKMWGVITNKHIESNSHSLY
>NC_023028.1|WP_023896595.1|1593955_1595542_-|cytochrome-ubiquinol-oxidase-subunit-I
MISESVVDLSRFQFAMTAMYHFLFVPLTLGLAFILAIMETTYVISGKEIYKDMTKFWGKLFGINFALGVTTGLTMEFQFGTNWAYYSHYVGDIFGAPLAIEGLMAFFLESTFIGLFFFGWDRLSKVQHLGVTWLVALGSNMSALWILVANGWMQNPVGAAFNFETMRMELVDFGALIFNPVAQVKFVHTVSAGYVTGAIFVLAISSYYLLKKRDLPFARRSFAIAAIFGLASTLSVILLGDESGYELGDVQKTKLAAIEAEWDTHPAPAPFTLFGVPNHEEMRTDYAVKIPYALGLIATRSTTKEVTGLKDLMQQHEVRIRNGMLAYAELEKLRAGDHSPELLASFEKNQKDLGYGLLLKKYAPNVVDASEQHIQAAVKDTIPNVTALFFSFRAMVASGFLMLLLFILATWAVAKRNAENKPWLLKYALFALPLPWIAAQTGWYVAEGGRQPWSIGEILPTHLSASSLSTGDVWGSILALAAFYTVLLIIEMYLMIKFARLGPSSLHTGKYHFEKQEPKAAVNGEALS

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Crispr_ID: NC_023028_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023028_3

2228173-2228258

Orphan

Consensus_repeat	Method
CCAGCTTCACGAGCCTCTTCTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_023028_3

>merge|NC_023028|3|2228173-2228258|CRISPRCasFinder
CCAGCTTCACGAGCCTCTTCTGAGGTAAATTCATGTGCGTTACCACTGGCATGTGCAGCACGGCCAGCTTCACGAGCTTCTTCTGA

>NC_023028|3|3|2228173-2228258|CRISPRCasFinder
CCAGCTTCACGAGCCTCTTCTGA	GGTAAATTCATGTGCGTTACCACTGGCATGTGCAGCACGG
CCAGCTTCACGAGCTTCTTCTGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_023028.1\|WP_000795915.1\|2227004_2227241_+\|hypothetical-protein	unknown	unknown	unknown
NC_023028.1\|WP_043960433.1\|2219483_2222948_-\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NC_023028.1\|WP_000107131.1\|2218527_2219487_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|381147
NC_023028.1\|WP_000983622.1\|2228889_2229303_+\|hypothetical-protein	unknown	unknown	unknown
NC_023028.1\|WP_001025680.1\|2218099_2218384_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379642
NC_023028.1\|WP_000108365.1\|2235066_2235288_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237171
NC_023028.1\|WP_000498477.1\|2235795_2236017_-\|hypothetical-protein	unknown	unknown	unknown
NC_023028.1\|WP_144080751.1\|2230378_2232523_-\|catalase-HPII	unknown	unknown	gnl\|CDD\|236886
NC_023028.1\|WP_000885238.1\|2225428_2226040_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NC_023028.1\|WP_001124839.1\|2226110_2226722_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	unknown	unknown	gnl\|CDD\|182350
NC_023028.1\|WP_000937468.1\|2217155_2217791_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NC_023028.1\|WP_000132045.1\|2235393_2235711_+\|hypothetical-protein	unknown	unknown	unknown
NC_023028.1\|WP_000373858.1\|2224816_2225272_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NC_023028.1\|WP_144080750.1\|2223113_2224760_+\|allantoin-permease	unknown	unknown	gnl\|CDD\|224374
NC_023028.1\|WP_000251637.1\|2236801_2236945_-\|hypothetical-protein	unknown	unknown	unknown
NC_023028.1\|WP_081039251.1\|2217879_2218032_+\|hypothetical-protein	unknown	unknown	unknown
NC_023028.1\|WP_000432325.1\|2229444_2230323_+\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|187613
NC_023028.1\|WP_002008715.1\|2236104_2236458_-\|hypothetical-protein	unknown	unknown	unknown
NC_023028.1\|WP_000482091.1\|2234302_2234782_+\|CinA-family-protein	unknown	unknown	gnl\|CDD\|224463
NC_023028.1\|WP_023896913.1\|2232577_2233987_-\|iron-containing-redox-enzyme-family-protein	unknown	unknown	gnl\|CDD\|379634

Protein	Function_ID	Function_description	E-value
NC_023028.1\|WP_000482091.1\|2234302_2234782_+\|CinA-family-protein	gnl\|CDD\|224463	COG1546, CinA, Uncharacterized protein (competence- and mitomycin-induced) [General function prediction only].	5.88094e-21
NC_023028.1\|WP_043960433.1\|2219483_2222948_-\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	1.36119e-57
NC_023028.1\|WP_000107131.1\|2218527_2219487_-\|response-regulator-transcription-factor	gnl\|CDD\|381147	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains. Pseudomonas aeruginosa cyclic di-GMP phosphodiesterase PA4781 contains an N-terminal REC domain and a C-terminal catalytic HD-GYP domain, characteristics of RpfG family response regulators. PA4781 is involved in cyclic di-3',5'-GMP (c-di-GMP) hydrolysis/degradation in a two-step reaction via the linear intermediate pGpG to produce GMP. Its unphosphorylated REC domain prevents accessibility of c-di-GMP to the active site. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	6.80074e-55
NC_023028.1\|WP_001025680.1\|2218099_2218384_-\|N-acetyltransferase	gnl\|CDD\|379642	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase. This family of GCN5-related N-acetyl-transferases bind both CoA and acetyl-CoA. They are characterized by highly conserved glycine, a cysteine residue in the acetyl-CoA binding site near the acetyl group, their small size compared with other GNATs and a lack of of an obvious substrate-binding site. It is proposed that they transfer an acetyl group from acetyl-CoA to one or more unidentified aliphatic amines via an acetyl (cysteine) enzyme intermediate. The substrate might be another macromolecule.	1.0722e-24
NC_023028.1\|WP_000108365.1\|2235066_2235288_+\|hypothetical-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	5.30417e-06
NC_023028.1\|WP_144080751.1\|2230378_2232523_-\|catalase-HPII	gnl\|CDD\|236886	PRK11249, katE, hydroperoxidase II; Provisional.	0
NC_023028.1\|WP_000885238.1\|2225428_2226040_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	5.26218e-23
NC_023028.1\|WP_001124839.1\|2226110_2226722_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	6.03039e-39
NC_023028.1\|WP_000937468.1\|2217155_2217791_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	4.89841e-64
NC_023028.1\|WP_000373858.1\|2224816_2225272_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	8.09113e-40
NC_023028.1\|WP_144080750.1\|2223113_2224760_+\|allantoin-permease	gnl\|CDD\|224374	COG1457, CodB, Purine-cytosine permease and related proteins [Nucleotide transport and metabolism].	9.26818e-23
NC_023028.1\|WP_000432325.1\|2229444_2230323_+\|glucose-1-dehydrogenase	gnl\|CDD\|187613	cd05355, SDR_c1, classical (c) SDR, subgroup 1. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.33703e-161
NC_023028.1\|WP_023896913.1\|2232577_2233987_-\|iron-containing-redox-enzyme-family-protein	gnl\|CDD\|379634	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme. The CADD, Chlamydia protein associating with death domains, crystal structure reveals a dimer of seven-helical bundles. Each bundle contains a di-iron centre adjacent to an internal cavity that forms an active site similar to that of methane mono-oxygenase hydrolase.	9.42245e-19

>NC_023028.1|WP_000795915.1|2227004_2227241_+|hypothetical-protein
MKNQRDAVLGYADEQHAYYIRLIENDAVLGESYGIFCENPESEAAESIMTTLFLKKSFWLNGSEFTDIVKGLHPLTHS
>NC_023028.1|WP_001124839.1|2226110_2226722_-|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit
MPKKKEFEHGGARENAGRKAQFNEPTKVIRVPESQVNFIKNWLLNNVKTDNQTDFTSKLKIQQVHPNNDKIYHIPLATERVAAGFPSPAQDDIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDIDDPLIVDRSIPAKSGDIVIALIDNDFTVKRLMIDTQFQPPKVWLKAENPDYQNIYIEEGQELVIWGVVTYNLKRMR
>NC_023028.1|WP_000885238.1|2225428_2226040_+|LysE-family-translocator
MAFNIFIAFWSVSILFIITPGADWAYAISAGIKGKVVVPAVAGMLFGHFITILLVAAGVGMLVANNPTALMILTVAGSAYLLWMGINLLLTPPTPNESDSEKAQSWLSWATKGVYVSGLNPKVFLLFLALLPQFIDTTASWSVTTQILAFGVVHMISCAIIYLMVGYGSEAILKTRPQAAQLVGRFSGGLMVVIATCLLIGQI
>NC_023028.1|WP_000373858.1|2224816_2225272_-|Lrp/AsnC-family-transcriptional-regulator
MDRIDKKILAELQLNGRLSITELAEKVGLSISPCHRRVKALEESGAIKGYRAELDPNLVGFEFSAIVFITLKEGDKQAVEKFENAVIEIPQIIQAQRLFGEPDYLLHVVAKDLPAFQRLYDEKLSAIPSVQRLISTIVMKDVVPERLFPIG
>NC_023028.1|WP_144080750.1|2223113_2224760_+|allantoin-permease
MTENDWEIDVMSVSEHPNLDTVQGADSQKAVNETLEDYTLRYAPHTFRRWSPKVVAITALGGIAYLADFSIGASIGMSYGTTNAVFSILFAAIIIFLTGIPLAYYAARYNIDLDLITRGAGFGYIGSVLTSIIFASFTFIFFALEGSIMAQGLLLGLGIPLWAGYLISTVMVIPLVIYGMKALSKLQVWTTPLWLVLMIGPVAYLIYQEPTLVSQFATFTGHEGFAPVDMAAIMLGAGICLSLIMQIGEQIDYLRFMPAKTKENSKAWWAAVISAGPGWVILGAIKQIIGAFLGFYLLTKIPGVNSTEPVQQFNAAFHDMLPGWAALTLAVILVVISQIKINVTNAYSGSLAWTSAYTRISKHYPGRIVFVIVNLAIALALMEGNMFAVLGKILGFYSNFAIAWVVVVATDISINKYVLKLSPKEPEYRRDMLYNVNPVGMVAFLVSAGLSIAAFFGLLGSFLAPYSPIIALVLAFVLTPIMGLLTKGKYYIKSHDDGVKEPRYDAEGTPVATVYHCRVCEQGYERPDIMFSHKHNGTICSLCKTLDA
>NC_023028.1|WP_043960433.1|2219483_2222948_-|response-regulator
MSVMPDSSRPQQAPQRVIKTRREYNIWVADESIEDYALRYAPTSVRKWSPWTVTNTAISTVSFLAMEAIGATMLWQYGFSNAVWAAIVVCTIIFLTSWPISYYAAKYNVDVDLLTRGAGFGYIGSTITSLIYASFTFILLAFEAAIMAMALELALGIPQVIGYLISALVILPLVVKGIGFINKVQAITQPIWLLLLLLPWFFVLWKQPQILSSSLHFVGAVSNSTDFNLYYFGAACTLIFSFVIQIGEQADYLRFLPQKEKNRTAWRFAVFLGGPSWIIFGFLKVLMGMLLMVLAFQLFIPVSELDNPTYLYWVAYQQFIPDPQLALILTLALVCLAQIKINMTNAYAGSLAWSNFFARLTHSHPGRIVWLLFNVFIAIVLMEMGISHAVERILGLYSTIALAWIGAVVADLIICKPLGLSPKGIEFRRAYLYDINPVGVGALLIASVLSMLSYLGFFGLMAKGLASFIALGSAVLCVPIIAYLTKGKYYIARQPEKIQATSVANCVVCERDYELADMAGCPAYNGTICSLCCSLEARCHDLCKPDARWSVQLKKAIWHYLPERWASRLNSRVSLYLLLTLGLSIVLAVSLSLVYIQEKTYLETINAAAVPQLFTLFVKIYTILFLLMSVAAWWLVLNDESRRNAEIETHQQTALLIDEIAAHEVTSKDLQDARIAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQKQEQLSEQGKMALGVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQMFQPQFEQKNLQFVYEIGDNLPHYVRTDKKRLEQVLINLLGNALKFTTSGTITLKVEYRFQTAYFEIRDTGCGIAEADLERIFNPFERGSNVVQGGFTGTGLGLPIVKLLVDLLGGQLSVSSQLNQGSQFKIKFYLPSKEVVHPISNVYSNQITGYQGERKRILVVDNEAVDRGLVANFLKPLGFIIEEAESGIDCLRRVPIFQPNLILMDLNMPLMGGWETARLLRQNNITNVPILIISANAGEREVNPQDAVLSEDFMLKPIDLNLLLSKIGDKLGLVWIDSKSDALLENNEVQALDLNIYKQEQVTVHTLIQQPENNELLDFPQSLQQLNDLIGQGYIRGIQQTLTQCRQNFPKHNELWEQLEQAIQKFDLKHAQRLIQDKQ
>NC_023028.1|WP_000107131.1|2218527_2219487_-|response-regulator-transcription-factor
MSTQHVSFQQASPNEQAVILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFESCIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHAKLLQQQKQVIDATETAILALDVHGKIVWKTQKASDLLNQYLPELEGFEAGLKAWFSDLEHEKDPKKLTSCSYSTPSQQLQLLLLTPWETEPSVAKNYLIQIKTTTPALEMADILKYCPQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAHINSLVQEFH
>NC_023028.1|WP_001025680.1|2218099_2218384_-|N-acetyltransferase
MNIQQKDDTKHGSFSLLDGETVAGEMTYTWAGESMLIIDATDVNENYRGQGVGRQLLDALVAFVREKDVKVIPLCPYAKSVFDKDPSIGDVLRK
>NC_023028.1|WP_081039251.1|2217879_2218032_+|hypothetical-protein
MCNEFIFFPIGLKLFLLDKLFYKFDKFDLAIENLQISWIQLLKTYSLKQR
>NC_023028.1|WP_000937468.1|2217155_2217791_-|amino-acid-ABC-transporter-permease
MLPQFFSATLTTLKISIISIILAIIVGLICSILITYRVRVLNRIAQFYIELSRNTPLLIQLFFLYYGLPKLGIKIDGFTCGVIGLTFLGGSYMAEAFRAGLQSVAKGQIDSAKSIGLQPTQIFRYVIFPQALAISIPAIGANCLFLIKESSVVSAIAVVELLFVTKDLIGMDYKTTEALFLLIMAYLIILLPVSILTSYLEHRSRKVSHGT
>NC_023028.1|WP_000983622.1|2228889_2229303_+|hypothetical-protein
MMQPTHTHSTLQYIHISVPEILLSNIEIKNSWQDYNQEWSYRLDPPHASHPFQRDLYIIKSKNIETEDIKKLLDNIVVKNSKNKDDLKNIVEAETVIKEILDLSNYIPIENWLNDTGNRSIVESMIDKNKVKLLDII
>NC_023028.1|WP_000432325.1|2229444_2230323_+|glucose-1-dehydrogenase
MENTTNQYPSEVPAQVQPHQPGDQEKMHPEPEIIKASHKGSEKLKGKVAVISGGDSGIGRSVAVLFAREGADIAVLYLEEDQDAEITKQLIEKEGQQCLLLKGDISDPDLAKQNIDKVLQHFGKINILVNNAGVQYQQKEIESISNEQLEKTFKTNIFAMFYLTKEAIPYMEEGDSIINTTSITSYQGHDELIDYASTKGAITSFTRSLSNNLMKQKKGIRVNGVAPGPIWTPLIPSSFDAETVEKFGKDTPMGRMGQPSEVAPAYLFLASDDASYITGQVIHVNGGQIVNG
>NC_023028.1|WP_144080751.1|2230378_2232523_-|catalase-HPII
MDMNDNTKSTNKTSEMAGADAANKANTTQKTEQLDTVRDDATNEALTTNQGVKIADNQNSLRAGIRGSTLLEDFILREKITHFDHERIPERIVHARGVGAHGYFQAYEGNERLTKAGFLTDPTIQTPIFVRFSTVQGPRGSADTVRDIRGFAIKFYTQEGNFDLVGNNAPVFFVQDGIKFPDFVHAVKPEPDTEIPTGATAHDTFWDFVSLVPESAHAVIWAMSDRAIPRNLRSIQGFGVHTFRLINAEGKSHFVKFHWTPKQGLSALVWDEAQKLAGKDPDFHRRDLYEAIEQGFYPEWELGVQIVEEEDEMKFDFDLLDPTKIIPEELVPVTPIGRFVLNRNVDNFFAETEQVAFCPGHVVPGIDFTDDPLLQARLFSYTDTQLSRLGGPNFHQIPINKPVCPFHNNQRDGIHQHTIHKGQAAYQPNSIDGNWPVETPPAASNGGFESYPEKISGHKLRQRSETFSDYFSQPRLYYKSLAPHEQKHVVDAYTFELSKVQRKHIRERQVQQILANIDLDLARQVGANLGIEVPDLTLNYKKTAVEKSAKLSFLAFPPEDIQGRKVAVLIHNMVKSDALEAIKNWAIKEGVILHLLAPSLAPVKDHKDNVIVADGMQMSEPSIAYDAVIIPDGDNLNTVMQDGVARHYLLEAYKHLKPIVFLGNKSDLLEPLGLVADEGTLIEDEFQHVAEKFKNLIKAHRVWSREQIAAHVPA
>NC_023028.1|WP_023896913.1|2232577_2233987_-|iron-containing-redox-enzyme-family-protein
MPVVVKKRLLDLLQDNQQNYYELFVFFLDPDVSSFEKEKKARDFLVKEIDKLEMKEIDFPSDINLIKAWCKNDNKKNCQEFQEYLNRRQSGQDREYFKNVAQAFEFLIKVSPTKKVDGAWLYSSVHYWNDPIFHELIITYLEELGLGEPKANHVCIYDDLLRSLGLDSFDLLLEDEYYHQAVVQLALGYAPPEFIPEIVGFNLGYEQLPLHLLISNYELAELGIDSKYFNLHITIDNIDNGHAYKAIKVIEDIYNKYRDKELFLTKLKRGFALNNHGVSSSNIIKNLNTEDFVYRIFKRKALVGQLIHNETRQFGCKTINQWLSNPDDIAGLITHLTEHKWIKFNTDPEQSVFWRMINEENGKMFGVFNPVERQIIHDWIAGSDHSSNFLAYSRELKNSQRIQDYLFSYISDGELDALQERVQQSSDLAIKICKLTPFLAPDSHHKSIGLWSTRKYVELLFPYLGTFKN
>NC_023028.1|WP_000482091.1|2234302_2234782_+|CinA-family-protein
MFNKCCELLAKEKIKIAFFESASAGYLAYRFSLSPYSGDILIGSLVSYDLRVKENTLHISEELIEKYTAESMQVTVEMINKGKELLHADLYVACTGLLKKGGSETPEKPVGTFFYSIYYKNNFYNFRRVLRGPAFLKLRKLIYYVTQDIKLIILEDKRR
>NC_023028.1|WP_000108365.1|2235066_2235288_+|hypothetical-protein
MSTTNNQANQRNNQQQQQQQNDNRNQQQHGNQQQNDQQQQNNQQQQQNDNRGQQQGSNQKDSGQQNSNNNQQR
>NC_023028.1|WP_000132045.1|2235393_2235711_+|hypothetical-protein
MTDQNTDHAQLVAGDHNYSDSRWRESYLTRPYYQEAQLTTPDLDYDRDFSAAYELGHRARSESKEGTQFEDMEGSLQQKWEELKAESRLKWEHAKQAIKDAWDDM
>NC_023028.1|WP_000498477.1|2235795_2236017_-|hypothetical-protein
MFVYFTDGTCINDSEIYGVKAKYEQNKYVVEVTIKPTHVLATTPSVQFKKEVFDDPNLANQYLSHNFNMPPFF
>NC_023028.1|WP_002008715.1|2236104_2236458_-|hypothetical-protein
MEDLNNLMIELRQEIKGTKLKLLYNYIDFAEILIKPLQESKIKLDLSLIPKSKNTQEFVLWLAGFIERITTGGQEKLPPIRAKITLPAYAYEETYPSQKKPVNNGEEIIEYFKKNQS
>NC_023028.1|WP_000251637.1|2236801_2236945_-|hypothetical-protein
MVRIFCAVSMVLAIAMGMSACQDRNSRNDGMHEASDPATSHDMNKNS

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1119228 : 1134027

Acinetobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001187844.1\|1119228_1119777_-	GTP cyclohydrolase I FolE	A0A0P0HSD2	Acinetobacter_phage	1.7e-97	100.0
WP_023896399.1\|1120039_1121539_+	xanthine dehydrogenase small subunit	A0A0P0IVM8	Acinetobacter_phage	2.6e-276	96.4
WP_023896400.1\|1121540_1123916_+	xanthine dehydrogenase molybdopterin binding subunit	A0A0P0I429	Acinetobacter_phage	0.0e+00	98.5
WP_023896401.1\|1123922_1124906_+	xanthine dehydrogenase accessory protein XdhC	A0A0P0IKN7	Acinetobacter_phage	2.7e-181	95.4
WP_023896402.1\|1124916_1125612_-	Smr/MutS family protein	A0A0P0IDT4	Acinetobacter_phage	3.5e-119	97.8
WP_023896403.1\|1125621_1126428_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	6.9e-143	97.0
WP_001982145.1\|1126437_1127487_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	9.8e-190	100.0
WP_023896405.1\|1127843_1130576_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	0.0e+00	98.6
WP_023896407.1\|1130655_1133355_+	M1 family metallopeptidase	A0A0P0IY26	Acinetobacter_phage	0.0e+00	98.0
WP_171066371.1\|1133451_1134027_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.2e-109	99.5

DBSCAN-SWA_2

2648651 : 2682277

Acinetobacter_phage(87.5%)

capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023897101.1\|2648651_2649278_+	SOS response-associated peptidase family protein	A0A218MNF5	uncultured_virus	1.2e-65	56.3
WP_023897102.1\|2649342_2650668_+	hypothetical protein	NA	NA	NA	NA
WP_023897104.1\|2650851_2651346_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A2H4J538	uncultured_Caudovirales_phage	2.0e-44	58.3
WP_023897105.1\|2651349_2652648_+	Y-family DNA polymerase	A0A2H4JBL5	uncultured_Caudovirales_phage	8.2e-162	61.9
WP_023897106.1\|2652666_2653299_+	hypothetical protein	NA	NA	NA	NA
WP_023897107.1\|2653349_2653895_-	hypothetical protein	A0A0N7IRF5	Acinetobacter_phage	3.5e-98	95.6
WP_000433918.1\|2653937_2654327_-	hypothetical protein	J7I481	Acinetobacter_phage	2.5e-66	100.0
WP_023897108.1\|2654395_2657821_-	hypothetical protein	J7HXG3	Acinetobacter_phage	0.0e+00	95.4
WP_023897109.1\|2657813_2658176_-	hypothetical protein	A0A0P0J0A2	Acinetobacter_phage	5.2e-50	78.3
WP_000368382.1\|2658172_2658679_-	DUF1833 family protein	J7HXQ5	Acinetobacter_phage	3.8e-91	98.2
WP_023897110.1\|2658678_2659077_-	hypothetical protein	J7I0X8	Acinetobacter_phage	2.4e-72	98.5
WP_023897111.1\|2659169_2659757_-	hypothetical protein	NA	NA	NA	NA
WP_023897112.1\|2659847_2664371_-	tape measure protein	A0A0D4DC37	Acinetobacter_phage	0.0e+00	62.4
WP_023897113.1\|2664432_2665374_-	hypothetical protein	A0A0N7IRE6	Acinetobacter_phage	9.1e-171	97.8
WP_002157364.1\|2665458_2666316_-	DUF4760 domain-containing protein	A0A1B1P9E5	Acinetobacter_phage	8.7e-27	32.1
WP_023897114.1\|2666875_2667391_-	hypothetical protein	A0A0P0J095	Acinetobacter_phage	1.3e-70	97.0
WP_023897115.1\|2667460_2668378_-	hypothetical protein	J7HXP7	Acinetobacter_phage	3.7e-169	99.0
WP_023897117.1\|2668430_2669759_-	hypothetical protein	A0A0D4DCQ4	Acinetobacter_phage	8.8e-87	48.4
WP_023897118.1\|2669758_2670112_-	hypothetical protein	J7I469	Acinetobacter_phage	1.3e-58	97.4
WP_023897119.1\|2670208_2670730_-	SH3 domain-containing protein	NA	NA	NA	NA
WP_001277696.1\|2670838_2671057_-	hypothetical protein	A0A0P0I8C2	Acinetobacter_phage	1.2e-28	94.2
WP_079279144.1\|2671058_2671502_-	hypothetical protein	A0A0D4DBX3	Acinetobacter_phage	8.1e-69	88.4
WP_023897120.1\|2671458_2671827_-	hypothetical protein	A0A0D4DBN1	Acinetobacter_phage	9.7e-52	80.3
WP_023897121.1\|2671928_2672624_-	hypothetical protein	NA	NA	NA	NA
WP_023897122.1\|2672661_2673030_-	hypothetical protein	J7I467	Acinetobacter_phage	2.3e-61	93.4
WP_023897123.1\|2673029_2673410_-	hypothetical protein	A0A0P0IVQ3	Acinetobacter_phage	3.2e-58	94.4
WP_023897124.1\|2673413_2673746_-	hypothetical protein	A0A0N7IRE4	Acinetobacter_phage	3.4e-40	79.3
WP_023897126.1\|2673790_2674741_-	hypothetical protein	A0A0P0HSG2	Acinetobacter_phage	3.4e-173	96.8
WP_023897127.1\|2674754_2675546_-	hypothetical protein	A0A0P0J090	Acinetobacter_phage	5.6e-89	73.4
WP_000589038.1\|2675633_2675948_-	hypothetical protein	A0A0S3UFT8	Pseudomonas_phage	5.2e-14	50.5
WP_001291453.1\|2675999_2676152_-	hypothetical protein	NA	NA	NA	NA
WP_000004552.1\|2676167_2676398_-	hypothetical protein	NA	NA	NA	NA
WP_023897128.1\|2676394_2677501_-\|capsid	minor capsid protein	A0A0P0IR98	Acinetobacter_phage	4.1e-186	87.5
WP_023897129.1\|2677510_2678851_-	DUF4055 domain-containing protein	A0A0P0IDW1	Acinetobacter_phage	1.7e-239	93.5
WP_043960396.1\|2678890_2680183_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	2.2e-215	86.5
WP_000729387.1\|2680142_2680658_-	DUF2280 domain-containing protein	A0A1B1P9C2	Acinetobacter_phage	3.2e-45	61.3
WP_023897131.1\|2680716_2681358_-	hypothetical protein	A0A0P0I449	Acinetobacter_phage	3.8e-112	87.3
WP_023897132.1\|2681326_2681761_-	hypothetical protein	A0A0P0IVP9	Acinetobacter_phage	2.1e-77	96.5
WP_002132480.1\|2681821_2682277_-	hypothetical protein	A0A0P0HSF5	Acinetobacter_phage	3.0e-79	94.7

DBSCAN-SWA_3

2685559 : 2695342

Acinetobacter_phage(93.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001277128.1\|2685559_2686036_-	hypothetical protein	A0A2H4J548	uncultured_Caudovirales_phage	1.2e-25	40.3
WP_023897134.1\|2686032_2686434_-	DUF559 domain-containing protein	A0A0P0I8E8	Acinetobacter_phage	1.1e-61	89.3
WP_023897135.1\|2686433_2686889_-	hypothetical protein	NA	NA	NA	NA
WP_023897136.1\|2686885_2687635_-	hypothetical protein	A0A0N7IRF0	Acinetobacter_phage	6.2e-138	99.6
WP_023897137.1\|2687627_2688557_-	YdaU family protein	A0A0P0I481	Acinetobacter_phage	8.4e-169	98.1
WP_023897138.1\|2688556_2688913_-	hypothetical protein	A0A0P0IVS7	Acinetobacter_phage	6.3e-56	97.5
WP_023897139.1\|2688909_2689206_-	hypothetical protein	A0A0P0HSJ2	Acinetobacter_phage	9.8e-47	96.9
WP_001072908.1\|2689202_2689487_-	hypothetical protein	A0A0P0IVP2	Acinetobacter_phage	5.4e-34	85.7
WP_000041061.1\|2689536_2689893_-	hypothetical protein	J7I452	Acinetobacter_phage	2.5e-57	97.5
WP_001077691.1\|2689901_2690102_-	helix-turn-helix transcriptional regulator	A0A0P0IKT3	Acinetobacter_phage	3.1e-20	68.2
WP_000212394.1\|2690214_2690871_+	helix-turn-helix domain-containing protein	A0A0P0IYD9	Acinetobacter_phage	3.1e-69	63.8
WP_000862387.1\|2690872_2691154_+	hypothetical protein	NA	NA	NA	NA
WP_023897141.1\|2691374_2691815_+	hypothetical protein	A0A0N7IRE9	Acinetobacter_phage	4.4e-75	97.9
WP_023897143.1\|2691817_2692141_+	hypothetical protein	A0A0P0IVW1	Acinetobacter_phage	3.5e-45	82.2
WP_023897144.1\|2692152_2692917_+	hypothetical protein	NA	NA	NA	NA
WP_023897145.1\|2692931_2693894_+	hypothetical protein	A0A0D4DBR8	Acinetobacter_phage	4.7e-154	86.9
WP_000654845.1\|2693895_2694141_+	hypothetical protein	A0A0P0IVN4	Acinetobacter_phage	1.6e-39	97.5
WP_000481377.1\|2694143_2694623_+	hypothetical protein	NA	NA	NA	NA
WP_023897146.1\|2694619_2695342_+	hypothetical protein	A0A0P0HSE1	Acinetobacter_phage	8.3e-55	88.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_023031

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_023028

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection