CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011966	Clostridium beijerinckii NRRL B-598, complete genome	3 crisprs	DEDDh,RT,cas3,csa3,c2c10_CAS-V-U3,DinG,WYL	0	2	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011966_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011966_1

1111550-1111652

Orphan

Consensus_repeat	Method
CACATTAGAAAAAGGCGCGAAGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011966_1

>merge|NZ_CP011966|1|1111550-1111652|CRISPRCasFinder
CACATTAGAAAAAGGCGCGAAGCGCGACAAAAAACATTTCACGTTAGAAAAAGGCGCAAAGCGCAATAAAGAACAGTCCACATTAGAAAAAGGCGCGAAGCGC

>NZ_CP011966|1|1|1111550-1111652|CRISPRCasFinder
CACATTAGAAAAAGGCGCGAAGCGC	GACAAAAAACATTTCACGTTAGAAAAAGGCGCAAAGCGCAATAAAGAACAGTC
CACATTAGAAAAAGGCGCGAAGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011966.2\|WP_011968343.1\|1108981_1109908_+\|aspartate-carbamoyltransferase	unknown	unknown	gnl\|CDD\|234849
NZ_CP011966.2\|WP_023975245.1\|1097952_1098840_-\|delta-lactam-biosynthetic-de-N-acetylase	unknown	unknown	gnl\|CDD\|131930
NZ_CP011966.2\|WP_011968341.1\|1106703_1107801_+\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|274155
NZ_CP011966.2\|WP_023973489.1\|1118803_1121035_+\|formate-C-acetyltransferase	unknown	unknown	gnl\|CDD\|153087
NZ_CP011966.2\|WP_023975244.1\|1100951_1102772_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP011966.2\|WP_023975242.1\|1104148_1105009_+\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
NZ_CP011966.2\|WP_023973487.1\|1122363_1124595_+\|formate-C-acetyltransferase	unknown	unknown	gnl\|CDD\|153087
NZ_CP011966.2\|WP_017212736.1\|1113666_1114563_+\|dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235982
NZ_CP011966.2\|WP_011968337.1\|1099400_1100498_+\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NZ_CP011966.2\|WP_023975243.1\|1102840_1103818_+\|mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
NZ_CP011966.2\|WP_023973492.1\|1112901_1113645_+\|dihydroorotate-dehydrogenase-electron-transfer-subunit	unknown	unknown	gnl\|CDD\|234601
NZ_CP011966.2\|WP_023973493.1\|1111993_1112866_+\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234651
NZ_CP011966.2\|WP_011968353.1\|1121377_1122103_+\|pyruvate-formate-lyase-1-activating-enzyme	unknown	unknown	gnl\|CDD\|131546
NZ_CP011966.2\|WP_011968349.1\|1114654_1115329_+\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
NZ_CP011966.2\|WP_011968342.1\|1107895_1108672_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|379138
NZ_CP011966.2\|WP_011968355.1\|1124828_1124990_-\|rubredoxin	unknown	unknown	gnl\|CDD\|224687
NZ_CP011966.2\|WP_023973491.1\|1115982_1116744_+\|stationary-phase-survival-protein-SurE	unknown	unknown	gnl\|CDD\|184406
NZ_CP011966.2\|WP_023977109.1\|1105452_1106346_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372648
NZ_CP011966.2\|WP_011968344.1\|1109909_1110341_+\|aspartate-carbamoyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|234859
NZ_CP011966.2\|WP_023973490.1\|1116777_1118160_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|200549

Protein	Function_ID	Function_description	E-value
NZ_CP011966.2\|WP_011968343.1\|1108981_1109908_+\|aspartate-carbamoyltransferase	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	2.16318e-140
NZ_CP011966.2\|WP_023975245.1\|1097952_1098840_-\|delta-lactam-biosynthetic-de-N-acetylase	gnl\|CDD\|131930	TIGR02884, spore_pdaA, delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Sporulation and germination].	8.56796e-123
NZ_CP011966.2\|WP_011968341.1\|1106703_1107801_+\|6-phosphofructokinase	gnl\|CDD\|274155	TIGR02483, ATP-dependent_6-phosphofructokinase_1, phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal. [Energy metabolism, Glycolysis/gluconeogenesis].	2.97895e-165
NZ_CP011966.2\|WP_023973489.1\|1118803_1121035_+\|formate-C-acetyltransferase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
NZ_CP011966.2\|WP_023975244.1\|1100951_1102772_+\|hypothetical-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	3.86165e-14
NZ_CP011966.2\|WP_023975242.1\|1104148_1105009_+\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	7.69384e-96
NZ_CP011966.2\|WP_023973487.1\|1122363_1124595_+\|formate-C-acetyltransferase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
NZ_CP011966.2\|WP_017212736.1\|1113666_1114563_+\|dihydroorotate-dehydrogenase	gnl\|CDD\|235982	PRK07259, PRK07259, dihydroorotate dehydrogenase.	1.34861e-175
NZ_CP011966.2\|WP_011968337.1\|1099400_1100498_+\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NZ_CP011966.2\|WP_023975243.1\|1102840_1103818_+\|mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	2.70729e-86
NZ_CP011966.2\|WP_023973492.1\|1112901_1113645_+\|dihydroorotate-dehydrogenase-electron-transfer-subunit	gnl\|CDD\|234601	PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed.	1.12962e-121
NZ_CP011966.2\|WP_023973493.1\|1111993_1112866_+\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234651	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed.	8.40468e-153
NZ_CP011966.2\|WP_011968353.1\|1121377_1122103_+\|pyruvate-formate-lyase-1-activating-enzyme	gnl\|CDD\|131546	TIGR02493, PFLA, pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue. [Energy metabolism, Anaerobic, Protein fate, Protein modification and repair].	2.98992e-115
NZ_CP011966.2\|WP_011968349.1\|1114654_1115329_+\|orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	5.0351e-69
NZ_CP011966.2\|WP_011968342.1\|1107895_1108672_+\|serine-hydrolase	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	2.2217e-53
NZ_CP011966.2\|WP_011968355.1\|1124828_1124990_-\|rubredoxin	gnl\|CDD\|224687	COG1773, COG1773, Rubredoxin [Energy production and conversion].	8.8626e-19
NZ_CP011966.2\|WP_023973491.1\|1115982_1116744_+\|stationary-phase-survival-protein-SurE	gnl\|CDD\|184406	PRK13933, PRK13933, stationary phase survival protein SurE; Provisional.	3.71034e-146
NZ_CP011966.2\|WP_023977109.1\|1105452_1106346_+\|hypothetical-protein	gnl\|CDD\|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.06852e-96
NZ_CP011966.2\|WP_011968344.1\|1109909_1110341_+\|aspartate-carbamoyltransferase-regulatory-subunit	gnl\|CDD\|234859	PRK00893, PRK00893, aspartate carbamoyltransferase regulatory subunit; Reviewed.	1.63472e-62
NZ_CP011966.2\|WP_023973490.1\|1116777_1118160_-\|hypothetical-protein	gnl\|CDD\|200549	cd10923, CE4_COG5298, Putative NodB-like catalytic domain of uncharacterized proteins found in bacteria. This family corresponds to a group of uncharacterized bacterial proteins with high sequence similarity to the catalytic domain of the six-stranded barrel rhizobial NodB-like proteins, which remove N-linked or O-linked acetyl groups from cell wall polysaccharides and belong to the larger carbohydrate esterase 4 (CE4) superfamily. Some family members contain an additional copper amine oxidase N-terminal domain.	2.75925e-57

>NZ_CP011966.2|WP_011968344.1|1109909_1110341_+|aspartate-carbamoyltransferase-regulatory-subunit
MLEITSIKNGIVIDHIQAGVGVKIFKYLKLDTNDCSVALIINADSKKLGKKDIIKIENCFELDYTVLGLLSPTITICEVKDEMIINKVTPTLPDKVENIIKCKNPSCITSQEEYVPHSFILVDKENGRYRCEYCDEITKLSEI
>NZ_CP011966.2|WP_011968343.1|1108981_1109908_+|aspartate-carbamoyltransferase
MIKDIKHLIEPMDFTVEELDEIFNLAHQIIAHPKEFSHICDGKILATLFYEPSTRTRLSFEAAMMRLGGKILGFSEPNSTSISKGETLADTIKMVSIYSDIITMRHPKEGAAKVASIYSNVPIINAGDGGHQHPTQTLADLLTITSLKNGLNNHRIGICGDLKFGRTVHSLIKAMSRYQNNKFVLISPKELAIPQYIREEVLAKNHIEYIEVEKLEDVIESLDILYMTRVQKERFFNEEEYLRLRDSYILDRAKMDLAKDDMIVMHPLPRVNEIAYEVDEDRRASYFKQAEYGMYVRMALMIKLLGVM
>NZ_CP011966.2|WP_011968342.1|1107895_1108672_+|serine-hydrolase
MKEIKRYLESRIGTYSFFFEDLESGFSYGYNENVQMTSAGCMKLPIAVSIIKHVQEGNSTFLDKIKIEEEDKVYGTGILHEFDNREYTIFELLVAMLIQSDNTAANKLIDIVGIDKINDDIEAQGLKNTKLNRKTSDERAVSNGIENITSALDLSKIWKHLYNSSFLDEKNSKMLMDILQRQQMKNKLALYIPDDLKYEISSKTGDKASVENDTALIHSPKGSFTFTVLSMGIPNSVYGTVTLAKCGKMMWDNIMNNF
>NZ_CP011966.2|WP_011968341.1|1106703_1107801_+|6-phosphofructokinase
MSKDIKKIALLTGGGDCPGLNAVISAVTKSAILNYGYEVIGYKFGYRGLYNNDFISLDLGAVSGLISRGGTILYSSNKDNLFDYSVEENGQIVKKDVSDVAVENLKKEGVDVLVVIGGDGTLTSARDFSRKGVNVIGVPKTIDNDLGSTDVTFGFNTAIGIATEALDRLHTTAESHHRIMILEVMGRNAGFIALESGIAGSADVILLPEIPYDINKVVEKIEDRKKHGKLFTIIVVAEGAKPKNGDVIVSKIVEDSPDPIRLGGIGNKIAEDLEKLVKDREVRCTVLGHIQRGGTTSTYDRILSTRYGVEAIELINKGKFGSMVCLKGNEITYDSLENVIGNNKKVDQDGELVAVAKRIGISFAD
>NZ_CP011966.2|WP_023977109.1|1105452_1106346_+|hypothetical-protein
MQNLLVEIFYDVDNFCIGFENYCKSHFLTENSDRKFAMIKSKTLSLSEVMTITIYFHLSNYRTFKSYYIEHVSTVLKPYFPKLVSYNRFVELMQQSLVALLLYMMKFRTGKCTGISFIDSTTLNVCHNRRIHSHKVFKGIAERGKSSTGWFYGFKLHLVVNDKGDILSFYLTPGNVDDREIKTIEILAKDLFGKLFGDKGYLSKKISDILYSKGIQLITKIKKNMKNKLMLMEDKILLRKRAIIETINDQLKNICQIEHNRHRSFTNFAVNIVSGLISYSFLPKKPSLKLDKYLTME
>NZ_CP011966.2|WP_023975242.1|1104148_1105009_+|undecaprenyl-diphosphate-phosphatase
MGLDILFIIKAIIIAIVEGLTEFIPVSSTGHMILASSIINFKGDFVKMYEVVIQLGAILAVVVLYWKKIKDSVIEFFRYIFTKGKEGKTGFNFGINVIVGCIPMLIIGLLFYKKIKSLFNPEAVVIGFIVGGILLIIIENMFRKSNKHATKSLDSITPMQALKVGVFQVLSVWPGMSRSASTIMGGWIAGLSTPIAAEFSFFLAIPAMIGASAKDLMEFDYSGMNLTSWISLVVGFIVAFVVSVVVMDKFVSYLKKRPMRVFAVYRIGAGIVFGILMFFGFLNFTL
>NZ_CP011966.2|WP_023975243.1|1102840_1103818_+|mannose-6-phosphate-isomerase
MYPIKFENLYYERIWGGKHLEKFRNNVPEGVIGESWDIACHKNGTGKVENGELKGKTFDEIINLYGEKLLGTEISTKEFPLLIKLITAEDKLSVQVHPDDEYANKVEKDSGKTEAWYVVDAEENASLIVGTKDCDKEKFKKAIEEGELDKYLNKIPVKRGDFFFVQSGLVHAICEGVLIAEIQQNSDTTYRVYDYNRGREIHVEKALDVIDFSLKGENSKGILIERDGYDKSYLCLDEYFTIQKYKITTSVKETSDEGRFYLFTCVEGNGVIKYSGGEEKMLMGDSIFIPATLGDYELVGNFTVLKSYVPNIENEEKSIMSVIEK
>NZ_CP011966.2|WP_023975244.1|1100951_1102772_+|hypothetical-protein
MKKSVIEYISDFKNSKYFTYINDLKKSKYFKYISDFKKDRYFTPPVIIVICLSAVMITNVISKSRIESSKDKLTIAANSAEEDFYNDKYDAAIEEYNKYQEQEKDEWPIWNLKIAEIYSVKGDFADSNELLTKVYLARNKIVDGKKQKNIDNFESKDRELTNYIVFTSFMNGDYDKALQYGELFLMDYPTDKSLLKTMFTVYMANDKKDKMKEIIDNYPRDDENASDLADLARMNMMMNNLDEGLLLLKDAWHKDKNEVKVFDVITQIAEYNKNDILNKITALEKKDSGELAYKMWQAEIYSNDKESAEKANNLISELEGKDVGSINLALIKSNTYQNLGESEKARDVINEMIKSDPNSFIGYHAMSLEDYSDENYDDALKNCEKSISLNKDYADNYGFLMPEIMEKQDKSENAEPYFRTALYKEPFNYNILIKLAEYYGNTVKDSSRGLYYYTLASKMNPNDAEVYYNMALIKVANQRQDEAIDLLKKSIAINSKEIKYHRALGTVYLNKEKGDDALKEIRAAYAIDKNDILTLNNAGCYYVAIEGDLSRGLVNFKAAYDGINDKTREEDKDTISENYNRVRNLSDAYNKRNGATLKIPDLKLFY
>NZ_CP011966.2|WP_011968337.1|1099400_1100498_+|redox-regulated-ATPase-YchF
MKLGMVGLPNVGKSTLFNAITKAGAESANYPFCTIEPNVGVVSVPDKRLDVLEKMYNTKKKVYTAIEFYDIAGLVKGASKGEGLGNKFLSHIREVAAIVHVVRCFDDGNVVHVEGSVDPIRDIETINLELIFSDLEVLERRMEKSIKLARSGDKTAKFEYGVMERIKEHLEANKPVRTLEVTDEEEAFIKSLFLITSKPVLYACNISEDDVMEGNFDNDYVKRVKEYAVSENSEVMVVSAKIEEELSGLDDEEKAEMLGEYGLDESGLDKLIEASYKLLGLMSFLTAGVQEVRAWTIKRGTKAPAAAGKIHSDIERGFIRAEVVSYNDLVECGSEAAAKEKGKFRLEGKDYIMQDGDVVNFRFNV
>NZ_CP011966.2|WP_023975245.1|1097952_1098840_-|delta-lactam-biosynthetic-de-N-acetylase
MNKSIKSLIALSLVMNLITLVPPKPALAASDNETDSNECFQEDGVFGDILDVDNIRDIFSSFSDEDELNWYYVGKGKDQVAEGPKESVSFLKENSAYYLGDTSKKVLYLTFDEGYENGNTGKILDILKECQVPAAFFVVKPYIDTQPELIKRMVDEGHVVGNHTVHHPSIAQIRDKEKFEAEFTGVENAFKELTGQDMPKFFRPPMGKYSKKSLAMTKDLGYKTIFWSFAYKDWLVNNQPSESYAVEKICKGAHPGSIMLLHAVSNTNTKVLSSVIKTLQKEGYEFKSLNDLPTE
>NZ_CP011966.2|WP_023973493.1|1111993_1112866_+|orotidine-5'-phosphate-decarboxylase
MTNYIIDKLYNRVEERGVVCVGLDTALSYIPDHIKEGRTDSEAIFEFNKQIIDATWDVSACFKVQIAYYEALGLEGLIAYKKTLDYLRDKGEIIIADIKRGDIAATATMYAKAHFDGDFEADFITLSPYMGMDSIEPYVPYLEKGSKGVFSLVRTSNPGAEDIEYLDTTGDKKVYEVVADKITEMGKKYTGSCGYTAIGGVIGCTHVEEGKKIRLNYSNMFFLIPGYGAQGGKAEDVALYLNNGNGGVVNSSRGILLAYKKENREKEFALCAREEAIKMRDAIREAVKNV
>NZ_CP011966.2|WP_023973492.1|1112901_1113645_+|dihydroorotate-dehydrogenase-electron-transfer-subunit
MAITYRNAKVVSNKEISKDIYKLVVEDDAEIKAGQFYMLKLNGATFLPRPISICEKSENKLTFLYAVVGNGTKEFTKLKEDDEISLTGPLGNGFDLEKEYNKVALVSGGIGTAPMLELAKKLRKKNPDQKIDLYAGFRDDVYLIDELKEYVNEVYISTNTGKNGHKGFITEILKPEDYDTVLCCGPEIMMKKVIDMCKEKNVAVYVSMEKHMACGVGACLVCTCKTKDGHKRTCKDGPIFDGYYVEL
>NZ_CP011966.2|WP_017212736.1|1113666_1114563_+|dihydroorotate-dehydrogenase
MMKVTINNVEFKNPVIAASGTFGFGEEFNNFYDVGILGGISSKGLTINPKQGNEGIRVYETPSGMMNSVGLQNPGIDAFIENELPKMRKYGTNVIANIGGGCLEDYEAAVRKIDSSDVDMIELNISCPNVKHGGMAFGIKSKVAYDVVREIKAMTKKPLMVKLSPNAEDIVDMAVKCQEAGADSISLINTLKGMAIDVYKRKPVFNNITAGLSGPAVKPIALRMVYEVAKAVDIPVIGLGGISSGKDAIEFMMAGASAVQIGTINFVNPMAGKEIVEEMESFLKEQGIKDINEIIGII
>NZ_CP011966.2|WP_011968349.1|1114654_1115329_+|orotate-phosphoribosyltransferase
MKAYKKEFINFMIECGVLTFGDFVTKSGRKTPFFVNTGNYQTGSQLRRLGEFYAEAIKENFADDYDVLFGPAYKGIPLSVTTSIALSSSFDIDVRYCSNRKEVKDHGDTGILLGSKLNDGDKVLIVEDVTTAGTSIYETMPILKSQADVNVKGLIISVDRMERGQGEQSALTEIREKFGFKTCAIVTMAEVIEYLYNKEINGTILITDEVKGRIDEYYKQYGAK
>NZ_CP011966.2|WP_023973491.1|1115982_1116744_+|stationary-phase-survival-protein-SurE
MNILITNDDGINAPGIIALAKEISKENKVIIVAPKDQKSASSHSISIHSPIKIKEEFIEGLDCKAYSVSGTPADCTQVGLSFLKENIELVISGINKGPNVGTDILYSGTVSAAIEGTIYGIPSIAVSMDVEYGKDNEDYSKAVKWAIKVLNIAKEEYLKSDVVLNLNIPNFNERDIKGIKVCKIGRSTYKTEYILLESNEEGDLYTTKGTRNAIKEEESDVYYLSQGYVTLTPLHFDFTNFAILSDVTKIFEK
>NZ_CP011966.2|WP_023973490.1|1116777_1118160_-|hypothetical-protein
MQRNAKLSLFSFLAIALSVFILYQVLSYFNFFRKNLTIINKTLYSSMLPEEKFKSTYTPKIKFSDKPVTKVNDVTLNILNTGNLTNVPMLLKAQRYYIPLTFICSKLNYTLDTSNNSISIYNDSNKIFLNETTYEKNSIKGTLRGNLLNNNGSYYISISDIEEIFDLFAVFDFQNKKINLIPNDVKEPEDSAILYSDKIGLIRFEDFGCGYTNVVDKNQTKIKIMANLLFSQGLKFHISWIPRFVVPSANFDNDLLTNDNIVNVGFVDVLDYALNKGGEIGLHGYTHQSGNDSSGTGEEMSKDVNSTEAETRAVIEKGIDTASALNIPISYYESPHYRDTEQQKKIISEYFQFIYEPYDYTKKNIYKPDDSHLFVPTPLGRIADPSTDTTRMVNTINEGDADTLNSFYYHPSIEIDYINFNLNGNKLNVNYDTRSPLQQIVKALKDNDYTTVHIDNLINK
>NZ_CP011966.2|WP_023973489.1|1118803_1121035_+|formate-C-acetyltransferase
MFKQWDGFKNGTWQESIDVRNFIQKNYKLYEGDSTFLEDKTEKTSKVWARAYELIVEEVKKGIIDVANDRVSGIDNYEPGYIDKDNEVIVGLQTDAPLKRIVNPFGGMRMVQSSLKEYGYELDKNIEEYFPKYRKTHNEGVFDAYTKEIRVARSAGLLTGLPDAYGRGRIIGDYRRVALYGIDYLIEEKKRDLDNLNGDMLDELVRKREEVSMQIRALGEVKSMASKYGIDISKPASNAREAAQHLYFGYLAGIKENNGAATSFGRTSTFLDIYIERDLEAGLITEKEAQEIVDQLIIKLRLVRHLRTPEYNELFGGDPTWVTESIGGVGINGKPLVTKNSFRYLHTLINLGTSAEPNLTVLWSDKLPESFKKYCAEISIKTDSIQYENDEVMRPVYGDDYAIACCVSAMKVGKQMQFFGARANIAKSLLYAINGGVDELKGIKVVPGIEKLTDEEILDFNKVKSNYFKVLEYVAKVYVDTMNIIHFMHDKYAYEAGQMALHDTAVERLMAFGIAGLSVAIDSLSAVKYAKVKPIRNEEGITVDFEVEGDFPKYGNDDDRADDLGVELVTKFSNELKKHPLYRDAKHTLSALTITSNVMYGKKTGTTPDGRKKGEPLAPGANPMHGRDINGALASLNSVAKIPYNEICQDGVSNTFSIVPDALGKDENQKITNLVAILDGYFTQGAHHLNVNVLNRQTLIDAMENPDKYPTLTIRVSGYAVNFSRLSKEQQLEVISRTFHESI
>NZ_CP011966.2|WP_011968353.1|1121377_1122103_+|pyruvate-formate-lyase-1-activating-enzyme
MVKGNVHSIESMGLVDGPGIRVVVFLQGCALRCKYCHNPDTWATNGGEEYTPEQLVNKIERFKTYFASSGGGVTFSGGEPLRQPEFLLETLKLCKSKGINTCIDTAGYGFGDYDEILKYTDLVLFDIKHFTPEGYKNITLMNIDESLKFLEAMKRNNTKMWIRHVVVPGLTDDVEHLKELKKYIDEIPNVEKVELLPYHLLGTNKYEGLGIKYPLENVKAMDKELIKKYQKEIFGDYSYGK
>NZ_CP011966.2|WP_023973487.1|1122363_1124595_+|formate-C-acetyltransferase
MFKQWEGFKNGTWQEGIDVRNFIQKNYKLYEGDGSFLEEKTERTSKVWDKAYALIVEEVKKGIIDVATDIVSGIDNYDPGYIDRDNEVIVGLQTDAPLKRIVNPFGGMRMVQSSLKEYGYELDPEINKNFSKYRKTHNEGVFDAYTKEIRAARSAGLLTGLPDAYGRGRIIGDYRRVALYGIDYLIEEKKKDLDNLNGDMLDELVRKREEVSMQIRALGEVKSMAAKYGIDISKPASNAKEAAQHLYFGYLAGIKENNGAATSFGRTSTFLDIYIERDLEAGLITEKEAQEIVDQLIIKLRLVRHLRTPEYNELFGGDPTWVTESIGGVGINGKPLVTKNSFRYLHTLINLGTSAEPNLTVLWSDKLPESFKKYCAEISIKTDSIQYENDEVMRPIYGDDYAIACCVSAMKVGKQMQFFGARANIAKSLLYAINGGVDELKGIKVVPGIEKLTDEEILNFDKVKANYFKVLEYVAKVYVDTMNIIHFMHDKYAYEASQMALHDTAVERLMAFGIAGLSVAIDSLSAIKYAKVKPIRNEEGITVDFEVEGDFPKYGNDDDRADDLGVELVTKFSNELKKHPLYRDAKHTLSALTITSNVMYGKKTGTTPDGRKKGEPLAPGANPMHGRDINGALASLNSVAKIPYNEICQDGVSNTFSIVPDALGKNEDQKINNLVAILDGYFTQGAHHLNVNVLNRQTLIDAMENPDKYPTLTIRVSGYAVNFSRLSKEQQLEVISRTFHESI
>NZ_CP011966.2|WP_011968355.1|1124828_1124990_-|rubredoxin
MKKYVCEVCGYIYDPELGDPDGGIAPHVDFNDLPDYWVCPICAFNKDNFSVLE

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Crispr_ID: NZ_CP011966_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011966_2

4837147-4837243

Orphan

Consensus_repeat	Method
CCATACTTGTATGGTAGTTATATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011966_2

>merge|NZ_CP011966|2|4837147-4837243|CRISPRCasFinder
CCATACTTGTATGGTAGTTATATTTATATTTTATCATAAGTATTTTAAAAAATCTATTACTAATCGATACTGCCATACTTGTATGGTAGTTATGTTT

>NZ_CP011966|2|2|4837147-4837243|CRISPRCasFinder
CCATACTTGTATGGTAGTTATATTT	ATATTTTATCATAAGTATTTTAAAAAATCTATTACTAATCGATACTG
CCATACTTGTATGGTAGTTATGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011966.2\|WP_023973086.1\|4839223_4840399_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226618
NZ_CP011966.2\|WP_012060238.1\|4830080_4831586_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225121
NZ_CP011966.2\|WP_012060242.1\|4836444_4837116_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP011966.2\|WP_031275512.1\|4833465_4835079_-\|mannitol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223324
NZ_CP011966.2\|WP_023973089.1\|4844393_4845455_-\|glycerol-dehydrogenase	unknown	unknown	gnl\|CDD\|341453
NZ_CP011966.2\|WP_054249055.1\|4843344_4843788_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_CP011966.2\|WP_023973092.1\|4849772_4851176_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|237929
NZ_CP011966.2\|WP_012060239.1\|4831624_4833037_-\|glucuronate-isomerase	unknown	unknown	gnl\|CDD\|376859
NZ_CP011966.2\|WP_012060237.1\|4829373_4829796_-\|HIT-family-protein	unknown	unknown	gnl\|CDD\|223611
NZ_CP011966.2\|WP_023973084.1\|4835192_4836254_-\|mannonate-dehydratase	unknown	unknown	gnl\|CDD\|235172
NZ_CP011966.2\|WP_023973082.1\|4825886_4827350_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380478
NZ_CP011966.2\|WP_023973080.1\|4823023_4823941_-\|ribokinase	unknown	unknown	gnl\|CDD\|238579
NZ_CP011966.2\|WP_023973093.1\|4851589_4852069_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP011966.2\|WP_023973091.1\|4848488_4849217_-\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NZ_CP011966.2\|WP_023973085.1\|4837462_4839142_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP011966.2\|WP_023973081.1\|4824106_4825804_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP011966.2\|WP_012060250.1\|4845550_4845862_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011966.2\|WP_012060246.1\|4842910_4843207_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011966.2\|WP_012060236.1\|4827928_4828486_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|226472
NZ_CP011966.2\|WP_017209073.1\|4845945_4846137_-\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377200

Protein	Function_ID	Function_description	E-value
NZ_CP011966.2\|WP_023973086.1\|4839223_4840399_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|226618	COG4134, COG4134, ABC-type uncharacterized transport system, periplasmic component [General function prediction only].	2.4168e-45
NZ_CP011966.2\|WP_012060238.1\|4830080_4831586_-\|MFS-transporter	gnl\|CDD\|225121	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism].	5.77788e-95
NZ_CP011966.2\|WP_012060242.1\|4836444_4837116_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	2.29977e-50
NZ_CP011966.2\|WP_031275512.1\|4833465_4835079_-\|mannitol-dehydrogenase-family-protein	gnl\|CDD\|223324	COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism].	1.35519e-117
NZ_CP011966.2\|WP_023973089.1\|4844393_4845455_-\|glycerol-dehydrogenase	gnl\|CDD\|341453	cd08174, G1PDH-like, Glycerol-1-phosphate dehydrogenase-like. These glycerol-1-phosphate dehydrogenase-like proteins have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH) which plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion.	2.52043e-157
NZ_CP011966.2\|WP_054249055.1\|4843344_4843788_-\|N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.76723e-07
NZ_CP011966.2\|WP_023973092.1\|4849772_4851176_-\|amino-acid-permease	gnl\|CDD\|237929	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional.	1.15718e-42
NZ_CP011966.2\|WP_012060239.1\|4831624_4833037_-\|glucuronate-isomerase	gnl\|CDD\|376859	pfam02614, UxaC, Glucuronate isomerase. This is a family of Glucuronate isomerases also known as D-glucuronate isomerase, uronic isomerase, uronate isomerase, or uronic acid isomerase, EC:5.3.1.12. This enzyme catalyzes the reactions: D-glucuronate <=> D-fructuronate and D-galacturonate <=> D-tagaturonate. It is not however clear where the experimental evidence for this functional assignment came from and thus this family has no literature reference.	0
NZ_CP011966.2\|WP_012060237.1\|4829373_4829796_-\|HIT-family-protein	gnl\|CDD\|223611	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only].	8.84206e-16
NZ_CP011966.2\|WP_023973084.1\|4835192_4836254_-\|mannonate-dehydratase	gnl\|CDD\|235172	PRK03906, PRK03906, mannonate dehydratase; Provisional.	0
NZ_CP011966.2\|WP_023973082.1\|4825886_4827350_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380478	cd01536, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2) receptors such as LsrB and LuxP which are highly homologous to periplasmic pentose/hexose sugar-binding proteins.	7.39454e-58
NZ_CP011966.2\|WP_023973080.1\|4823023_4823941_-\|ribokinase	gnl\|CDD\|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	6.31533e-124
NZ_CP011966.2\|WP_023973093.1\|4851589_4852069_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	6.38296e-15
NZ_CP011966.2\|WP_023973091.1\|4848488_4849217_-\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	3.89961e-51
NZ_CP011966.2\|WP_023973085.1\|4837462_4839142_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	8.13553e-47
NZ_CP011966.2\|WP_023973081.1\|4824106_4825804_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.31582e-42
NZ_CP011966.2\|WP_012060236.1\|4827928_4828486_-\|SAM-dependent-methyltransferase	gnl\|CDD\|226472	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism].	4.28401e-52
NZ_CP011966.2\|WP_017209073.1\|4845945_4846137_-\|PspC-domain-containing-protein	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	2.96494e-23

>NZ_CP011966.2|WP_012060242.1|4836444_4837116_-|GntR-family-transcriptional-regulator
MALEVNKNTTSKTIYYKLRDEIINLYLEPGTSISEKELSEKYSVSRTPVREALVRLAQEGLVNIYPQKGTVVSLIDLSAVEEGRFLREHLERAVVKEACKEFSQENVLALEMNLKLQKMYIENNDYKKLFEADEEFHKIIFEGSNKKRVWNSINDGSTEFQRIRMLRLVTNSSWDNIYLQHKEIFNAIKNKSPEIAEDFMKEHLNMVTFDKNKIKEKYPNYFK
>NZ_CP011966.2|WP_023973084.1|4835192_4836254_-|mannonate-dehydratase
MKMGFRWYGEGNDTVTLEQIKQIPGVGGIVWALHDMAAGEEWPMEKILEVKKSADKYGFNMDVVESVNVHEDIKLGLPTRDKYIENYKKTIEKLAKVGVKVICYNFMPVFDWLRTDLFKKAEDGSTALFYEKAKIKDIDPMELVNKIASNPDLTMPGWEPERLKNLSQLFEAYKNVTEEDLWNNLKYFLEQIIPVAEINDIKMAVHPDDPPWPIFGLPRIVKNRDDLARLLKLVDNPYNCLTLCSGAIGSDPNNNVPAMIREFGNRIAFAHIRNVKIYENGDFIETSHRTCDGSLDICDIVKAYHEVGFTGYVRPDHGRHIWNEQCRPGYGLYDRALGIMYLWGIWDSLERNK
>NZ_CP011966.2|WP_031275512.1|4833465_4835079_-|mannitol-dehydrogenase-family-protein
MNNAKIVLSKESIKNSDLWEKAGIEIPKFDYDKMSASTKENPTWVHFGAGNIFRGFIAILQQELLNTGKAKSGIVAVEGYDYEIIDEIYSPYDNLSLLVIMKPDGSLDKKVVGSIGESLAGDYSREEDWNRLKEIFSNPSLQIASFTITEKGYSVKNLSQQDTTDGLEHPVSIIAKVASLAYVRYQNGQLPIAFVSMDNCSKNGEKLHNAMETMIKNWVENGLVDKGFLEYINDTKKVSFPWSMIDKITPRPSQSVKNTLEAVGFDSTKIVTTSKNTYIAPFVNAEGPQYLVIEDNFPNGRMPLEEAGVFLTNRETVERVETMKVTTCLNPLHTSLAVFGCLLGFDLIADEMKDPALKKLVEKIGYEEGMPVVVNPGILNPEDFIKEVVEVRLPNPYIPDTPQRIASDTSQKVGIRFGETIKAYSKREDLDAKELKYIPLVIAGWCRYLMGLDDNGNVIELSPDPLLDELRKYVADIKLGSKESVESSLKSILINEEIFGVNLYTIGLGEKIEGYFNELISGAGAVRATLEKYLDCK
>NZ_CP011966.2|WP_012060239.1|4831624_4833037_-|glucuronate-isomerase
MKNFMDENFLLSNQTAIDLYHNYAKNLPIIDYHCHIDPKEIYENKKFSNITEAWLYGDHYKWRAMRSNGIDEKCITGDGSDYDKFLAWSQTIPMAIGNPLYHWTHLELQRFFGIYEPLDEDTAPEIWKRANELLNGEGFNVRDLIIKSNVETICTTDDPIDTLEYHIKIKEDASFNVNVLPTLRPDKGIEINLDGFVSWVKDLEKVSEVSINNYDEFLKALDSRIRFFHSVGCRIADHGIDGVVVYADSSKEEAEAIFAKALEGKSISIDEEKKYKTYTLRHVFKLYHELGWTMQLHIAALRSNNTKMLEKIGVNTGFDSINDESIAYPLSRLLDSVDRENSLPKTILYTLNPKDNYVLGTMIGNFQGDGIPGKMQFGAAWWFNDNKDGMIEQMKALGNLGLLGRFVGMLTDSRSFLSYTRHEYFRRIACNLIGEWVENGEVPKNDKLLKRIVQGICYSNAKEYFGFDEK
>NZ_CP011966.2|WP_012060238.1|4830080_4831586_-|MFS-transporter
MSNNNRKITIARGVGYGLVDLMGGGAFTIIGAFLLFFYTTFAGLTPIEGASIIAIARIVDAVASLFIGSISDNFYKTKLGKLFGRRRFFLLIGAPLMADYVLLWVTGRSYAFYLVTYLLFEIIAAMVLIPWETLPAEMTKDFTDRTKLSASRMFISATGTFLATFVPGRLIAFFGDKSPQAYFINGLVFAIIYAICILISHKVTWERDLTPEMEQELLNGSTSKSFGEQLMTIVKVAGDYVSTFKIRAFRQHLAIYICSFTAKDLFNSVFIYFCVFNLGVSSTTAANVLSLSIIGIPVTILGGFLMIKVGPGNLYKMAYSIMIVCLLAFYGLYVGNLGSNIVLLFVIGTIYQVGRSLLEFTPWNVFPFIPDVDEMVTRQRREGLFAAVMTFTRKSSVAIATFVIGVVLQESGFVKGQATQSPQVVSTIATLLAVGCISLLVIALICAATFKLNKRTHGILVDEVERLKNNGSKEEVTPETKTIVENLTGYKYENVWKETVV
>NZ_CP011966.2|WP_012060237.1|4829373_4829796_-|HIT-family-protein
MSNKNNCLYCDKDEKLDNLMIEICKLEVSTLYLFKEQSHKGRCIVAYDKHVKELFELDDKELELYMKDVTRAAAMIKKTFSPDKINYGAYSDTLPHLHFHLVPKYKDGYSWGGVFEMNPQKKYLSDEEYVKRINLIKENL
>NZ_CP011966.2|WP_012060236.1|4827928_4828486_-|SAM-dependent-methyltransferase
MWIKFLMEYFKSPRTVGAVAPSSKKLAEKMAHDIDFDHAKCIVEYGPGTGVFTDRLMKKIKDHTMLMLVEYNEEFCRELEEKYGEYNNVVIVNDSAENVDKYLKEYNIKEVDYVVSGLPFASLPKNMSNSILKKTKDILKKNGLFITFQYTLLKKGYIGSYFEDISLERVVLNIPPAYVLKCQNT
>NZ_CP011966.2|WP_023973082.1|4825886_4827350_-|sugar-ABC-transporter-substrate-binding-protein
MEILNFRLRKLSCIVLIILVGSILSACSQVGKVIVDNEPKEDRQKDYIEEVPTQTVTNEKSVDLAPLYDQVRNLKGQEALDFFESLKSKGLSDSDILEFFINLPLSDANKEITDIYKNEKFETYMSTYPTGKPFGNYKWTNGDGTKIKGAFSELDLKLPFSNYVALKSGPVGDLNKKYRIGVAIHGFDQPWNVSLADAAQWEAERHPNVEVDVKDAQWDNDKMADIIDSFVLQKVDGILTWPMVESETTIAPVKRAIEAGIPVVSVDRMTGLEETTSRVTGNFPANGAQCGMYLIWKLAKEGSLNANVVLLRKPSGSTADANRTGHFLKVLSYFPDIHILKSYHDDDNTAEALANMQLALNEYPSIDVVFGTGDHEAIAAYDASKNANRLNSRKDAKKMMFLSIDDSKKAITSVKDGLFEVNTPYTPLISDIGMRTLLNIITKNGSMPHDIITPNIPMVTKDGDTIFGLKTQTPDQWYEYTFGAPIK
>NZ_CP011966.2|WP_023973081.1|4824106_4825804_-|methyl-accepting-chemotaxis-protein
MKKISSVPGTIPLTIKSKLIISFSLIIFLVSAVGITSYMTMRSYLVQENIMIEKNVMANDIIILINSIPQDISKYILNPTAENKKIIDDKFININKNQEFIKDNVSGEKALKSFDAVSRMLESYSEENIKLFESKNATEMVEKNKLMNRFSKLIQNSMQEYMSVELDQQNKARADLAKKSNFTGVLIIVFIVSIGFFSIIFAIFFSIKLGKSLNKIVLLADDIANGNLQVEEYKVNSNDEVSLLTSSFNEMTKNLRTMIKGIISNSKDLYESSTMIKDRAKESVKAVNQIAVSTQDAVDGSQYQFSEAKRTEEAVNRLIKMNSTIKEKSNNVLSSANKSLKIAEGGNEKVRSMLNQMNTIKEQVMNIQSVTGILKENSSQIETILDTISKITASTELLALNAAIEAARAGEYGKGFAVVSDEIRKLATSSATSTVEISKILTQIQNYINVLIKSMSIAVSEVMSGSEKVLEVEGAFKNIVESNNDVDGEIKNISDEILVMVNEINAIEKISKNICEISNKSLEGSTDISAIVEEQLATQEEFFASATTLANISSELANVVSKFRV
>NZ_CP011966.2|WP_023973080.1|4823023_4823941_-|ribokinase
MKSLCVIGSLNMDLVTTVENFPVAGQTVMGKAFNTFPGGKGGNQAIALGRLGSDVLMVGKIGEDMYGKRYLEVLRSNNVKSDGVSIEKGMSSGVAVIQVSNNGENNIIVVPGANAEVDINYIESKWSLIERADIFLFQLEIPLETAIATMKKLKKQGKTVILDPAPAVGLPDEIFKYVDYLTPNETELETLIGRKINSEENLVEAAKTLFDKGVRVIVAKLGSDGAAIIKKDKCTRVPGFIVDPIDTTAAGDSFNAGFAFALAKEKELKECVIFGNAVGAISTTALGAQEAMPTFERVDKFIRDR
>NZ_CP011966.2|WP_023973085.1|4837462_4839142_+|methyl-accepting-chemotaxis-protein
MLKNIKIINSVILMVILSTVVSLSIARIGYNNMKTINSNSSSMYTIALTRIIKTEEIRQTFLNIRLNVNRISISEFNDDDVAAIDNDYSAINKMVEDYENLSLSTIETNNLSEFKKDSSAYYEQIKNLEKGNKLYGIDLEKFNQLGVEMQLFLDNLVTYSSNTANALHNDNMSLYIRSTKIFFITFFIGFILQILVSSSIILVIRKSIKEIMSDLDNVAAGDFSFEINTNLKNEFGRMKKSLKVTISNISSMLEEVQNSANVVNIQATNLLGASDEMSSSAQEINAAVQEVANAATEQSSDLMNVKTSLDSFADSLDQITSSINDVNSNIHNISSMAEDSNSKLEFLFNSIKDVNESFDTVRNKVVQLDNHVEQVNNITTIINSIADQTDLLALNAAIESARAGEVGRGFSVVAEEIRKLAEQSKVSASNISGLITNINNEAQIAVKTTDLGKDSLNNQSVLIEDSIKSFALIFKAINTILPRVDNINKSIENINIEKDLIISKTLNISGVSEENAASSEEIAASVQQINSSFNDVATSAQTLSNLTTSMMNEVSKFKL
>NZ_CP011966.2|WP_023973086.1|4839223_4840399_+|ABC-transporter-substrate-binding-protein
MKNFKFLNVTLVIVLMTTILTGCGSKNVSKSTQPITLNIIDVSGSMQLVGDSIDQFKAANPDLIGDVVVKKSTALEVPSLLKAQILSEDMKTNLIFTGIDGLSTCIDRDVIENIMPTYGSRFPDLESNYSSGAKATYDLVKGYAITYVYSPSGPFFTYNPDTVQNIPKTPDELLAFAKANPGKFTYARPTGSGPGRIFLQGLPYILGDKDPKDPKTWDKTWAYLKELNQYIDYYPAKTGTTFTELKAGKRSIIASQLGWDMNQRIIGGIPQTYQGFVLNNTTLVADAQYMAIPKGLSDEQKNVVLKLMAWLMTPKMQAITYDSGYFYPGPSVKNVSLDMAPKESQDKIKPAIRQSYEDSINTLPNSTQLDTTKFMDALNMWDQLFGTKVKR
>NZ_CP011966.2|WP_012060246.1|4842910_4843207_+|hypothetical-protein
MAQNHICELCNRNVSSITKHHLIPLEKGGEKFKTLSLCSTCHRQIHALFTNRELATHYRSLESLKKDIKIVKFLKFIQNIPGDSYLDIKKSRHVRKSC
>NZ_CP011966.2|WP_054249055.1|4843344_4843788_-|N-acetyltransferase
MNNITYEFINYKSKEFKEVSELRFKILFKPYNKIHKYDYDELDYSSIHLVGLDKGAVVAYSRMTNYNMNGKMTNIVVSEEYVGKGIGIEMLKRHKIKAKEFGVICLYLNARLDTINFYKKAGFQCKGNIFISEKSGLALQPMYFKIN
>NZ_CP011966.2|WP_023973089.1|4844393_4845455_-|glycerol-dehydrogenase
MKTSTHRIAIPSILEVGKGNINNVGNLIKKAMFKSVLICFGEGLEELFGDSICNSLKEANIDISRIETISDVNFEKISVKAFEISNDVEALIGVGGGKAIDAVKYMSFLRKLPFISIPTSTSNDGFSSAGASLLVNGKRMSLPAKTPYGIIVDIDVIKSAPEKFIYSGIGDLVSNITALYDWKFEEENGRIIIDDFATMISKKAVNSFIRTEFKNIKDDLFLKELVDSLILNGISMEIAGDSSPASGSEHLISHALDKFLEMPQLHGIQVGIATYIMAKVQDHRFERISKILKETNFFEHAKTLKMKKKDYKKAIDIAPSIKPNRYTYIHVDENRILAKKIIDEDEILNYILI
>NZ_CP011966.2|WP_012060250.1|4845550_4845862_-|hypothetical-protein
MDKVNSLIKNTPIHLTTNTIVLIIVAIIALYILIKAIAGIIRIAALIGVCWFILMSIQSTNLINIPIIREAYTTVEKIIPSKELWTEALDKADKINKVVNDLK
>NZ_CP011966.2|WP_017209073.1|4845945_4846137_-|PspC-domain-containing-protein
MEKRLYLSATDKKLAGVCGGIAEYFGLDSTLVRIGWAILIVCAGSGLLLYIICALIIPKQPLL
>NZ_CP011966.2|WP_023973091.1|4848488_4849217_-|FadR-family-transcriptional-regulator
MSDIRELSFNDTNSSTKSLGEQTSERIVRLIIDSDWKSGDKLPNEYDLASSLNVGRSTIREAIKALVSRNVLEIRRGAGTFISDKCGIADDPLGLTFVKDKYKLALDLLEVRFMIEPSIASIAATKATDEEIEQMSNLCDEIESLILKDEPYLEKDIEFHTAIAKSSKNLVVVNLIPIINRSITIFIDITNRKLRNETIETHREILNSIKEHNANGAHDAMLLHLVYNRRNIASIIGKERNY
>NZ_CP011966.2|WP_023973092.1|4849772_4851176_-|amino-acid-permease
MSEKNNKKIVWYTLAFMAFSTVWGFGNVINGFSEYNGLKSVVSWILIFAIYFVPYALMVGELGSAFKEFGGGVSSWINETISPRVAYYAGWTYWIVHMPYISQKPSNFMIATSWAIFQDKRISSMDTKLLQITCLVIFLVGLYIASKGLNPLKKLATLAGTSMFVMSILFIVLMVAAPAITNAHLNSIDWSIKTFMPAFDIKFFTGLSILIFAVGGCEKISPYVNEMDDPEKGFSKGMIALAVMVAVCAILGTISLGMMFDSNNVPKDLMTNGAYYAFQKLGEYYHLGNLFVVVYAITNMIGQFAVLIISIDAPLRMLLDSADKNFIPEKMFVKNKYGTYKNGHKLILIIVSILIIVPAFGIGNVDELVKWLVKLNAVCMPLRYLWVFAAYIALKKAGEKFKPEYQFVKNRTVGIIIGAWCFAFTAFACISGMYTADKFQLVLNIITPFVLLGLGFIMPYFARKNNN
>NZ_CP011966.2|WP_023973093.1|4851589_4852069_-|MarR-family-transcriptional-regulator
MNLQEGPSSPNNELYQKQADEIIGVFRNIRRELSCKFEKIAKDCGFTAPQLNVIFHLYMMPSITLNELSDQIGLTKSTVSGIVDRLAKQGVVTREIPKENRRIVRLSISAEFRKNNDICKMKKEFISNLILNSIKNTDPEEVEKIIYGLKQFSILLNNN

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Crispr_ID: NZ_CP011966_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011966_3

5709529-5709675

Orphan

Consensus_repeat	Method
CATAGCACCTGATCCGTTTAAGTAGTA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP011966_3

>merge|NZ_CP011966|3|5709529-5709675|CRISPRCasFinder
CATAGCACCTGATCCGTTTAAGTAGTAGAAAGTTCCATTGTCATTTAACCAACCAGTTTGCATAGCACCTGATCCGTTTAAGTAGTACCAAGTTGCTCCATCTTGAACCCAACCTGTAGCCATTGTACCATCAGCTTTTAAGTAGTA

>NZ_CP011966|3|3|5709529-5709675|CRISPRCasFinder
CATAGCACCTGATCCGTTTAAGTAGTA	GAAAGTTCCATTGTCATTTAACCAACCAGTTTG
CATAGCACCTGATCCGTTTAAGTAGTA	CCAAGTTGCTCCATCTTGAACCCAACCTGTAGC
CATTGTACCATCAGCTTTTAAGTAGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011966.2\|WP_023974342.1\|5706806_5708348_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011966.2\|WP_023974349.1\|5717957_5719259_-\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP011966.2\|WP_023974347.1\|5714745_5716287_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP011966.2\|WP_023974336.1\|5699175_5700057_-\|glucose-1-phosphate-thymidylyltransferase	unknown	unknown	gnl\|CDD\|130274
NZ_CP011966.2\|WP_023974339.1\|5703025_5704858_+\|O-antigen-ligase-domain-containing-protein	unknown	unknown	gnl\|CDD\|377422
NZ_CP011966.2\|WP_023974354.1\|5723237_5723504_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011966.2\|WP_023974340.1\|5705246_5705954_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011966.2\|WP_023974338.1\|5701947_5702817_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133029
NZ_CP011966.2\|WP_023974352.1\|5722620_5722842_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011966.2\|WP_023974337.1\|5700453_5701872_+\|undecaprenyl-phosphate-glucose-phosphotransferase	unknown	unknown	gnl\|CDD\|274396
NZ_CP011966.2\|WP_023974341.1\|5705910_5706789_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213231
NZ_CP011966.2\|WP_023974348.1\|5716518_5717793_-\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP011966.2\|WP_023974334.1\|5697403_5698423_-\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224013
NZ_CP011966.2\|WP_023974350.1\|5720382_5722110_-\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP011966.2\|WP_012060924.1\|5723711_5724572_-\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NZ_CP011966.2\|WP_023974343.1\|5708422_5708782_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011966.2\|WP_023974345.1\|5712109_5713327_-\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP011966.2\|WP_023974353.1\|5722940_5723192_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011966.2\|WP_023974346.1\|5713471_5714695_-\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP011966.2\|WP_023974335.1\|5698590_5699142_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|376414

Protein	Function_ID	Function_description	E-value
NZ_CP011966.2\|WP_023974349.1\|5717957_5719259_-\|cell-wall-binding-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	8.7456e-28
NZ_CP011966.2\|WP_023974347.1\|5714745_5716287_-\|hypothetical-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	1.62383e-25
NZ_CP011966.2\|WP_023974336.1\|5699175_5700057_-\|glucose-1-phosphate-thymidylyltransferase	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	5.10086e-179
NZ_CP011966.2\|WP_023974339.1\|5703025_5704858_+\|O-antigen-ligase-domain-containing-protein	gnl\|CDD\|377422	pfam04932, Wzy_C, O-Antigen ligase. This group of bacterial proteins is involved in the synthesis of O-antigen, a lipopolysaccharide found in the outer membrane in gram-negative bacteria. This family includes O-antigen ligases such as E. coli RfaL.	2.54899e-06
NZ_CP011966.2\|WP_023974338.1\|5701947_5702817_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133029	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	2.68457e-57
NZ_CP011966.2\|WP_023974337.1\|5700453_5701872_+\|undecaprenyl-phosphate-glucose-phosphotransferase	gnl\|CDD\|274396	TIGR03023, Sugar_transferase., Undecaprenyl-phosphate glucose phosphotransferase. This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis, the Methylobacillus EpsB protein involved in methanolan biosynthesis, as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein, which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase, and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.	1.7083e-165
NZ_CP011966.2\|WP_023974346.1\|5713471_5714695_-\|cell-wall-binding-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	8.6775e-23
NZ_CP011966.2\|WP_023974348.1\|5716518_5717793_-\|cell-wall-binding-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	2.11664e-18
NZ_CP011966.2\|WP_023974334.1\|5697403_5698423_-\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|224013	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].	0
NZ_CP011966.2\|WP_023974350.1\|5720382_5722110_-\|cell-wall-binding-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	7.38397e-28
NZ_CP011966.2\|WP_012060924.1\|5723711_5724572_-\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	7.07972e-67
NZ_CP011966.2\|WP_023974345.1\|5712109_5713327_-\|cell-wall-binding-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	1.44424e-20
NZ_CP011966.2\|WP_023974341.1\|5705910_5706789_-\|hypothetical-protein	gnl\|CDD\|213231	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	4.49449e-86
NZ_CP011966.2\|WP_023974335.1\|5698590_5699142_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	1.25579e-101

>NZ_CP011966.2|WP_023974343.1|5708422_5708782_-|hypothetical-protein
MKKNFLTRLAAVALVMGAVVTALPASATVWCENTLSGKSDASKTERIQGENIAFEVDGQRGSGTAYARKNTSGGGYKNIAALQVDTDSKVTYFDADGSTYFIKWKGDSDKSKALAWFEG
>NZ_CP011966.2|WP_023974342.1|5706806_5708348_-|hypothetical-protein
MMKLVKFYTKLFVKTPIFILSLVFSMYIFIFQLKSLNLSILEYTSVISYAIIASNLFFLVAASSILSKRSEIMEFLEKNRFKRYLIIILSGAIISVITSIMPIIIIIIFKNSSIEYSFVVKGILNFFIIWNLSNIISISIGASVGILLNRWTSLFISISIYSFFPINLFSPLLESKVLNKLFNIYSDSTTIQTNILCDEIFDISYVCDKVFVLCLILLMIILVKILLDKNKKVLGGISFLLIVFFIGDIVFINNNSIRYIHEYDVSNFDNVDYHIKSYEMNMNIGDDLKNDVSFNLDVDSNIDSITFLLDDLFKIEEIRIDGEAAKFTHEDDKVVLDYKTNEKKSINIEISYEGHIHIEDELGVATFYCNSDVMNLTNSLHWYPSIYNNSSIDYDININTSANIYSNLDVESQGNNFKVTGTASEVDLFAGQYKKVDDNGIEYIIPSTYNLEEFKTKLEKRVSSYLVKHEEEFSKDDFEVLREKRYKKVIVGMHVNTNSYIKISNDTLLINYI
>NZ_CP011966.2|WP_023974341.1|5705910_5706789_-|hypothetical-protein
MDNQLLIENINFSYGKNKVLNNISFSCSNGIASILGANGAGKTTLMRVLIGANKPSTGKILLNNENLLECSNNMIGYLPQNFDIYDNITGYDFLSYVCDIKNVSSKEKKQHIDKVIQQFNLESIISKTIRNYSGGCKRRLGIAQAVIGNPNIIIIDEPTVGLDPEQRLEFRHYLSEIGKERIVLISTHILEDVELYTNTILIINQGSIIFKGSTSDAIAQAKNNIYTMNVNINELALINKKAMVIEEKRLENNMIKIKFIQTDDIVDKSELEKEVSLENAYVFLQKCETSLQ
>NZ_CP011966.2|WP_023974340.1|5705246_5705954_-|hypothetical-protein
MLTCFYKNVKLLYNNYYTIYDIKGKIIKFSFGILFLFLLISIYNPAPMEYMSLLSQKYKLVSVDNIYDYTIPMISCCIIAYAFYNDYKDNTHELITFFSGHKFNYILFCRWFLYTGIFLVGSFITALMYYRTVYFGGVQGILLALRSTPNIIFLTSAILLITTGTKSIYAGIFITTAYTICDYLSFGELFKILSIGANSYNFYYIISPGYYIANRLLILSIGIVNIYIAGRISSN
>NZ_CP011966.2|WP_023974339.1|5703025_5704858_+|O-antigen-ligase-domain-containing-protein
MTNSRNNSNEKSFNFFLPIAFILSIVPIIVRVAAVKLDENAIKIWGVTVKADLFSQRKALLLMIFSVILIITCVIFFKKIFSRKDKLVNYILIACGVFTLFTFLSAIFSKYRQVSFWGIFDRAEGFITIACYIILFLYSLYTFKTTNNYKYIITPLLILVFINSFLGLFQYIGQDLIKTSLGASIAGASSNSGIDLLNEKGTIYGTLASYNYMGSFVAIALPILFCYTIFEDDVMYKILSFIGTLLSFWLLFGSTARSGIVGVLGALIFGIIIFYKPLIKRWKGLLIGVVTLIILIIGANFASKGSLFKRIPSLASDAFSIFKDTSDFDYTNYTPVKDIKYMDSTTEVVLPNDTLKITYESGNPVFKDSNGEVVPYALNGKVLSTNIEAFKNITFAFGKLDKKSVISDSLLLNINNQPTFLFKLNESKVFHLIDISTKNSIDLQTPETFGFKGKEKLGSSRGYIWSRSLPLIKNTMILGTGPDTFVFDFPQGDLIGKYYAYDTPNIVVDKAHNLYLQIAINYGVIALLGFIAMLLIYIIDSIKLYALKNTFEDKNQMLGAITCLGIIGYLFAGIFNDSVVGVAPIFWILFGVGIAINFMNRETARKKISK
>NZ_CP011966.2|WP_023974338.1|5701947_5702817_+|glycosyltransferase-family-2-protein
MKLSIIIVNYNTYDLTKQTIESVIKEHHNFNYEVILVDNASSDGSINKLQDKFRNIVTIKKLHIIINKDNLGFAKANNIGVKFARGKYILLLNSDTVLKENCLEKCIVKMEKDKNIGALGCKVVLANGELDHACKRGFPTPKASLYYFLKLHEKNPSKYGQYNALHLREDDIGEVDCLTGAFMLMPKLIFDKAGGLDEDFFMYGEDIDLCYKIKELGYKILYYPEAQIIHYKGGSSKKRRSKVIYDFHQAMWIFYKKHYYKKYNFAVTFLVFIGIWLKYLVQIIKNSFK
>NZ_CP011966.2|WP_023974337.1|5700453_5701872_+|undecaprenyl-phosphate-glucose-phosphotransferase
MIKENQKLLNKFNAISDIIILFISMTLAYLIRFYIFSPDTYYITLDTYIKFSIMIIPINLILFNFFNLYHSFRTRSFVKECSSIIKSNTILTAIILSLLFVLKLVHISRLVIIIFYFVNIILIMTKRLILRNILSRMRTKGLNLKHVIIVGAGEVANDYLDVLKNNKGFGYSYSGYVADVSNFQGEKLGNYSDLYDVLNESKPDEVVCALDLSDANHLENIVSDCEKSGTKISIIPFCYKYIPSQPYIDQLGSIPLINIRRIPLDNLGNAFIKRSLDILGSLFLILCTSPIMIITAVIIKFTSNGPIIFKQKRVGLNKNLFVMYKFRSMKINSQEETGWSTDNDPRKTKFGSFIRKFSIDELPQFFNVLKGDMSLVGPRPELPHFVENFKNEIPLYMVKHQVKPGITGLAQVNGYRGDTSIKKRIEFDIHYIENWNILMDISILFKTAFKGFKNNEKIRINSTKSTNNEVNL
>NZ_CP011966.2|WP_023974336.1|5699175_5700057_-|glucose-1-phosphate-thymidylyltransferase
MTKGIILAGGSGTRLYPLTMVTSKQLLPVYDKPMIYYPLSTLMLAGIKDILIISTPKDLPNFEKLLGDGSRYGINLSYKVQPSPDGLAQAFILGEEFIGNDNCAMILGDNIFHGNGLKNHLKKAVENKGRSTVFGYYVDDPERFGVVEFDGNGKAISLEEKPAVPKSNYAVTGLYFYDNKVCEYAKKLQPSARGELEITDLNKIYLEQGNLDVITLGRGYGWLDTGTVDSLTEASEYVKVIETRQGLKIACLEEISYKNGWIDKKTLLKSAEQYGKSPYGQHLKNVADNKVIY
>NZ_CP011966.2|WP_023974335.1|5698590_5699142_-|dTDP-4-dehydrorhamnose-3,5-epimerase
MNLIKTKLEGVYIVEPKVFGDERGWFMETYSRIKTPEIACDFCQDNQSYSKGKGILRGIHFQNGENAQAKLVRCVKGAVLDVAVDLRKGSPAYKEWVAVELSAENKKQLFIPRGFGHGFLTLTDDVEFVYKTDNYYNYESDRSIKFDDPEIGVEWGIESPILSEKDKKAPLLKDSDCTFIYNK
>NZ_CP011966.2|WP_023974334.1|5697403_5698423_-|dTDP-glucose-4,6-dehydratase
MKIVVTGGAGFIGGNFVHYMINKYKDYKIICVDALTYAGNMETLVSVKDNSNFSFYKIDIADRDAVYDMFEKEHPDMVVNFAAESHVDRSIENPEIFLKTNIIGTAALMDACRKYGIKRYHQVSTDEVYGDLPIDRPDLFFTEETPIHTSSPYSSSKASADLLVGSYHRTYGLPVTISRCSNNYGPYHFPEKLIPLMIANALNDNELPVYGTGENVRDWLYVEDHCRAIDLIIHEGKVGEVYNIGGHNERTNLEVVKTIIRELGKSEDLIKYVTDRKGHDMRYAIDPTKIHNELGWLPTTTFDEGIKKTIRWYLDNKSWWENIISGEYQNYYTKMYEGR
>NZ_CP011966.2|WP_023974345.1|5712109_5713327_-|cell-wall-binding-protein
MNKNLKKIIAIILAVNTVSTIAPVANLGLLTTKAYAANKITNLTVEDSNGDNMSLYSESDCTDKHRVDSDDVQSGKTYYTRKTSADEINIDADGVDSDNIRVFEETSSDTEGKDIGEDVDLSSGTNIITVRVYNGDPGTVKYSDNSYVNEYKIRVKYSGSNDDDDEDSDNVYLSSITLMGGNIDFSKKVYTYDVQVPEDLSKITIRARPDCDSGKYDDYKVKINGVKVDKDDKFKDDVSLNKGKNVIDIKVEDDDDNERVYTLNITRGKDNSNNNSKSSEQAEVTKTSQWVQVDGKWQYKDSTGNSVKNTWVQNYFVQADGNMATGWLNNNGKWYYLGDDGARKTGWQLVNGNWYYLDSQGTMQVGWIKDINNGKYYYLNNNGSMAYNTTVGEYKLGSDGAWYNR
>NZ_CP011966.2|WP_023974346.1|5713471_5714695_-|cell-wall-binding-protein
MNKNIKRVIAIVLAIGTISAATPVSKTNLLTTRAYASTTNDESTLDSLSLDDSDGNNVKLYDDNDYKNRIKEEDVHEDEIYYAKTSSKTVSVDISGPDDRFVRVFRDSSDSTKGKEVGDDIQLTDKSVVTDLIIKVYGKDLDGETVRNNEHDDNEYDLLNTYEVKVRHVDEDDSDKTDFDDIYLERLSIAGSTINLSNSITKYTYNVDSNVNQVAIKATPENDNYDVTIDGEDADYDDNYKRNVNLEKGQNIIKVEIEHNNKDRVYTLIINRGNVSSTNTDTNTGSKDVKANQWVQTYGIWQYNDAEGKVVKNSWIQNYYLNSDGNMVTGWLNLNGNWYYFGTDGAKKVGWQQSSGKWYYLDSEGRMQTGWVKDRNGKYYYLNSDGSMAYNTKIGVYRLGADGAWIK
>NZ_CP011966.2|WP_023974347.1|5714745_5716287_-|hypothetical-protein
MKKNMIKIVSIALALGIVSAAAPATNINVLTIKAYAANDNDDDYLDRLELNDEDGNNIKLYSDSDYDSKVNASDVEEGETYYAKTSSDTVSIKIDGPDEKYVRVFNGTSSSSKGKEVGEDVDLSDDSSTTTLTIKVYGKEPDDDMRYKDNDDYNVLSTYRIKVENPNYNQNKDKDNIYLERLSVNNNKVQLSKSELTYTYNVASDVKRVTIKATPEDDDYDVTIDNKNVQSSDNYKKEVDLDEGTNEFEIELEDGDKDRVYTLIINRGNPSSNGTSSQDTAELEHQDSIYLDKLSIDGRLFSLAQSQVNYSSNVPSDVNKVTIKAEPEKDFYTVKVNGDEVFDDDDYKTTVNLKDGENKIKVDVKNENSDEERVYTLTVIRGSVTSTQNNTGSSAANQWVQVNGIWKYNDASGNFVKNTWVGNYYLLDNGNMATGWLNYNGSWYYLGSDGARKTGWQSVDGTWYYLDSQGKIQTGWIKDSNGKYYYLNSNGAMAYNTTVGGYKLGYDGAWIQK
>NZ_CP011966.2|WP_023974348.1|5716518_5717793_-|cell-wall-binding-protein
MNKNLKKIVAIALAIGTISAVAPATNINFLTTKAYASSDDDSNDETELESLQLLTESGSKIKLYESSSYDSDDKVDADQVEAGEKYFAKTSSDTINIDIDGPSSKYVRVFKGTSDSTKGKKISSDISLDKDSTTTLTVRVYDEEPDDDVRLEDDDYSSEYTIKVKCTADSSDSDDEDSDDSSDDYDDIYLDRLSVDGQTISLSKSKVEYTYNVSSDTDEVTIKATPDEDDYDVTIDGDSVDEDDKYKSDVELKKGENKIKIELEDGDDERVYTLIINRGGTSSTTGSTTNTASGSPSGATDVSATVKNKWVQVGGNWQYKDAAGNTVKNTWVQNYFVQADGNMATGWLNYSGKWYYLGSDGARKTGWQQAGGKWYYLDSEGAMQTGWVRDLGSGKYYYLNSDGSMAYNTMIGKYKLGSDGAWIN
>NZ_CP011966.2|WP_023974349.1|5717957_5719259_-|cell-wall-binding-protein
MHKKIKYIIAATLVVAAVSGFAPSNNFLLGSVEAYASTYNDASNGELKSLDLTWGSGSKIKLLDSYSGDEVDLSSDTDYYVQLKGVSDFNVAAEVKGSGYVVKMFTSSSRSEKGEDVGQDVNIGSGYKDIYLRTYKSEDAYKEAYNDGDVSDCEKTYIIHARKESSTSETEEDREYAYLDGINLSDGSVDFSKNKTSYDVNVGEDVDKLTVRANPDDDDDYIEINGNSVYEDDNFEKTVNLDKGNNTITIYVEHEDEDTTYTLNVYRGKSANKTDSSNGQNFAIQTQEGSLNAWQRVDGKWRYVDGTGSVLKNKWWFDKDTGKNYYLGQDGFRTTGWFSDNNNWYYFNENGEMQTGWVNTNKNWYYLNKSGAMQMGWLEDSTGNWYYLDGSGAMETGWIEDSNGKWYYLDSTGKMIKDSAIGAYKLGTDGELE
>NZ_CP011966.2|WP_023974350.1|5720382_5722110_-|cell-wall-binding-protein
MNKNIKRIIAITVAVNTISTISPTTLNTYFVGAKPVYASSYSPDDEQLKTLKIKSLDGETLDLRDGYNGDTVKLSDETEYYTKFNDDSDGIKITTEAEGDDYVVKIFTSDAENATAYDPGDEILLGKGDTTLYIRTYKSKSEFNKVKNNVSNCKEEYTLNVRKTKESSYEDDSQDSIYLDNIDLSKGDIDFIKGKTSYDIKVDENVDSMWIKAIPESNSDRVRVDGSLVDSSDNYKKTVSLDKGKNEIKIKVTDSKDNQRTYTLNVTRGDDSDNEDDIYLDHITLSEGDIDFSKDDNSYNVDLDESVSKITIGAEPEDSDYSVTIDGDEVRSSDDYEKKVSLDKGENVIKVNVEDELNDKKRTYTLTINRGKETDDSKDNNTEDTSDKKSQWVQTNDGWKYYDENGKVLKSSWLYDKDQKVYCYLDKDGLRVTGWHKDNEKWYLLDSKGAMLTGWQKDNEKWYLLGSDGAMLTGWHKETVDDQNKNTDASTNLGDNDTKKVDNWYYLNQDGSMRTGWLSDGGKWYFFNADGTMQKGWLIDYNSKYYLTEDGSMATGTRTINGKEYKFNNSGALIL
>NZ_CP011966.2|WP_023974352.1|5722620_5722842_+|hypothetical-protein
MSKEKMSSNENEKYYSGEELTDSHPSDPNDSELKKIKSMYLPDSKADHAPSEKSIEDANGLEHPEPVKPKSLI
>NZ_CP011966.2|WP_023974353.1|5722940_5723192_+|hypothetical-protein
MSQSKIPFSINPGDDYPMEEYSKENSSKSKASDSENAGKTTYSGERNAKSLNNANISRTNLDTELIDLNADGDSDESKYSDLI
>NZ_CP011966.2|WP_023974354.1|5723237_5723504_+|hypothetical-protein
MSKEKKVSHTSDVRDGSKKDFTNSYLPKMRTNYHPSRDDVESATGVDFPVNMPNPAVDPIVVNNIASQEFDYTQDMLSSDNYEIDGDD
>NZ_CP011966.2|WP_012060924.1|5723711_5724572_-|YitT-family-protein
MSLYYKLKHNIVDVFFIFLGCMIASLGVNLFLVHAKLLSGGATGIALILEYTLKVPSGVVILIINLPLLVLSYKKLDRSFTIYTTIGMLSLSASLLITKPLSRLIDMNGDLLIFCIYGGVLCGIGYGMVFLRHGSTGGTDIITMLIRKKYSNFNIGSLGFSLNLIIVIIGALIFGIPQALYTLISLFIQSTVLDRVLKGFSSKKLLLILTRKEKEIIDYVIKDLNRGVTSLFAEGEYTHDKKKMLYCIVSSHQMVELKSIVHQIDPGAFITIIDISEVRGKGFLTI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011966_3	3.1\|5709556\|33\|NZ_CP011966\|CRISPRCasFinder	5709556-5709588	33	MT446421	UNVERIFIED: Escherichia virus TH55, complete genome	42655-42687	6	0.818
NZ_CP011966_3	3.1\|5709556\|33\|NZ_CP011966\|CRISPRCasFinder	5709556-5709588	33	MT446415	UNVERIFIED: Escherichia virus TH44, complete genome	128912-128944	6	0.818
NZ_CP011966_3	3.1\|5709556\|33\|NZ_CP011966\|CRISPRCasFinder	5709556-5709588	33	MT446396	UNVERIFIED: Escherichia virus TH22, complete genome	6062-6094	6	0.818
NZ_CP011966_3	3.1\|5709556\|33\|NZ_CP011966\|CRISPRCasFinder	5709556-5709588	33	MT611523	Escherichia phage DK-13, complete genome	72351-72383	6	0.818
NZ_CP011966_3	3.1\|5709556\|33\|NZ_CP011966\|CRISPRCasFinder	5709556-5709588	33	AY682195	Lactobacillus plantarum bacteriophage LP65, complete genome	68176-68208	7	0.788
NZ_CP011966_3	3.1\|5709556\|33\|NZ_CP011966\|CRISPRCasFinder	5709556-5709588	33	NC_006565	Lactobacillus phage LP65, complete genome	68176-68208	7	0.788
NZ_CP011966_3	3.1\|5709556\|33\|NZ_CP011966\|CRISPRCasFinder	5709556-5709588	33	NZ_CP035169	Lactobacillus plantarum strain SRCM103418 plasmid unnamed1	56140-56172	9	0.727
NZ_CP011966_3	3.1\|5709556\|33\|NZ_CP011966\|CRISPRCasFinder	5709556-5709588	33	NZ_CP047122	Lactobacillus hilgardii strain FLUB plasmid unnamed1	23285-23317	9	0.727
NZ_CP011966_3	3.2\|5709616\|33\|NZ_CP011966\|CRISPRCasFinder	5709616-5709648	33	KC821604	Cellulophaga phage phiST, complete genome	48350-48382	11	0.667
NZ_CP011966_3	3.2\|5709616\|33\|NZ_CP011966\|CRISPRCasFinder	5709616-5709648	33	KC821621	Cellulophaga phage phi19:2, complete genome	48359-48391	11	0.667
NZ_CP011966_3	3.2\|5709616\|33\|NZ_CP011966\|CRISPRCasFinder	5709616-5709648	33	KC821625	Cellulophaga phage phi13:1, complete genome	46260-46292	11	0.667
NZ_CP011966_3	3.2\|5709616\|33\|NZ_CP011966\|CRISPRCasFinder	5709616-5709648	33	HQ634192	Cellulophaga phage phiST genomic sequence	30544-30576	11	0.667

1. spacer 3.1|5709556|33|NZ_CP011966|CRISPRCasFinder matches to MT446421 (UNVERIFIED: Escherichia virus TH55, complete genome) position: , mismatch: 6, identity: 0.818

gaaagttccattgtcatttaaccaaccagtttg	CRISPR spacer
gaaagttccattttcagttaaccaaccagaagc	Protospacer
************ *** ************

2. spacer 3.1|5709556|33|NZ_CP011966|CRISPRCasFinder matches to MT446415 (UNVERIFIED: Escherichia virus TH44, complete genome) position: , mismatch: 6, identity: 0.818

gaaagttccattgtcatttaaccaaccagtttg	CRISPR spacer
gaaagttccattttcagttaaccaaccagaagc	Protospacer
************ *** ************

3. spacer 3.1|5709556|33|NZ_CP011966|CRISPRCasFinder matches to MT446396 (UNVERIFIED: Escherichia virus TH22, complete genome) position: , mismatch: 6, identity: 0.818

gaaagttccattgtcatttaaccaaccagtttg	CRISPR spacer
gaaagttccattttcagttaaccaaccagaagc	Protospacer
************ *** ************

4. spacer 3.1|5709556|33|NZ_CP011966|CRISPRCasFinder matches to MT611523 (Escherichia phage DK-13, complete genome) position: , mismatch: 6, identity: 0.818

gaaagttccattgtcatttaaccaaccagtttg	CRISPR spacer
gaaagttccattttcagttaaccaaccagaagc	Protospacer
************ *** ************

5. spacer 3.1|5709556|33|NZ_CP011966|CRISPRCasFinder matches to AY682195 (Lactobacillus plantarum bacteriophage LP65, complete genome) position: , mismatch: 7, identity: 0.788

gaaagttccattgtcatttaaccaaccagtttg	CRISPR spacer
gtacgtttcattgtcatttatccaaccattatc	Protospacer
* * ***.************ ******* * *

6. spacer 3.1|5709556|33|NZ_CP011966|CRISPRCasFinder matches to NC_006565 (Lactobacillus phage LP65, complete genome) position: , mismatch: 7, identity: 0.788

gaaagttccattgtcatttaaccaaccagtttg	CRISPR spacer
gtacgtttcattgtcatttatccaaccattatc	Protospacer
* * ***.************ ******* * *

7. spacer 3.1|5709556|33|NZ_CP011966|CRISPRCasFinder matches to NZ_CP035169 (Lactobacillus plantarum strain SRCM103418 plasmid unnamed1) position: , mismatch: 9, identity: 0.727

gaaagttccattgtcatttaaccaaccagtttg	CRISPR spacer
ttaagttccattgtcttttaacgaaccaaggct	Protospacer
  ************* ****** *****.  .

8. spacer 3.1|5709556|33|NZ_CP011966|CRISPRCasFinder matches to NZ_CP047122 (Lactobacillus hilgardii strain FLUB plasmid unnamed1) position: , mismatch: 9, identity: 0.727

gaaagttccattgtcatttaaccaaccagtttg	CRISPR spacer
ttaagttccattgtcttttaacgaaccaaggct	Protospacer
  ************* ****** *****.  .

9. spacer 3.2|5709616|33|NZ_CP011966|CRISPRCasFinder matches to KC821604 (Cellulophaga phage phiST, complete genome) position: , mismatch: 11, identity: 0.667

ccaagttgctccatcttgaacccaacctgtagc	CRISPR spacer
gttagttgctccatctgaaacccaaccaaattt	Protospacer
 . ************* .********* .   .

10. spacer 3.2|5709616|33|NZ_CP011966|CRISPRCasFinder matches to KC821621 (Cellulophaga phage phi19:2, complete genome) position: , mismatch: 11, identity: 0.667

ccaagttgctccatcttgaacccaacctgtagc	CRISPR spacer
gttagttgctccatctgaaacccaaccaaattt	Protospacer
 . ************* .********* .   .

11. spacer 3.2|5709616|33|NZ_CP011966|CRISPRCasFinder matches to KC821625 (Cellulophaga phage phi13:1, complete genome) position: , mismatch: 11, identity: 0.667

ccaagttgctccatcttgaacccaacctgtagc	CRISPR spacer
gttagttgctccatctgaaacccaaccaaattt	Protospacer
 . ************* .********* .   .

12. spacer 3.2|5709616|33|NZ_CP011966|CRISPRCasFinder matches to HQ634192 (Cellulophaga phage phiST genomic sequence) position: , mismatch: 11, identity: 0.667

ccaagttgctccatcttgaacccaacctgtagc	CRISPR spacer
gttagttgctccatctgaaacccaaccaaattt	Protospacer
 . ************* .********* .   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

422061 : 484932

Clostridium_phage(13.33%)

coat,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017210071.1\|422061_423078_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
WP_023974835.1\|423079_423886_+\|coat	spore coat protein	NA	NA	NA	NA
WP_023974836.1\|423941_424997_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
WP_011967735.1\|425316_426438_-	glycosyltransferase family 1 protein	A0A1X9SJR9	Sulfolobus_islandicus_rod-shaped_virus	1.4e-05	27.9
WP_011967736.1\|426546_427545_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
WP_011967737.1\|427707_428568_+	sporulation peptidase YabG	NA	NA	NA	NA
WP_011967738.1\|428806_429346_+	glutathione peroxidase	NA	NA	NA	NA
WP_011967739.1\|429961_430204_+	hypothetical protein	NA	NA	NA	NA
WP_023974837.1\|430667_432230_+	peptidoglycan-binding protein	S6BFI4	Thermus_phage	2.0e-05	59.5
WP_017209901.1\|432349_432553_+	hypothetical protein	NA	NA	NA	NA
WP_011967741.1\|432559_433405_+	cyanophycinase	NA	NA	NA	NA
WP_023974838.1\|433376_436019_+	cyanophycin synthetase	NA	NA	NA	NA
WP_023974839.1\|436167_437010_+	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_023974840.1\|437073_437811_+	stage II sporulation protein R	NA	NA	NA	NA
WP_011967745.1\|437942_438359_+	DUF1934 domain-containing protein	NA	NA	NA	NA
WP_023974841.1\|438464_438773_+	hypothetical protein	NA	NA	NA	NA
WP_023974842.1\|438937_440548_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.5e-149	51.0
WP_054249154.1\|440856_442299_+	transcription termination factor Rho	NA	NA	NA	NA
WP_023974843.1\|442340_443447_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA
WP_023974844.1\|443660_443870_-	50S ribosomal protein L31	NA	NA	NA	NA
WP_017209894.1\|444059_444644_+	thymidine kinase	A0A249XXF6	Clostridium_phage	6.7e-55	55.3
WP_023974845.1\|444669_446430_+	peptide chain release factor N(5)-glutamine methyltransferase	A0A0K2CP67	Brevibacillus_phage	1.2e-06	28.1
WP_011967753.1\|446565_447648_+	peptide chain release factor 1	NA	NA	NA	NA
WP_023974846.1\|447713_448301_+	hypothetical protein	NA	NA	NA	NA
WP_017209891.1\|448356_449406_+	threonylcarbamoyl-AMP synthase	S4VW33	Pandoravirus	3.3e-44	35.4
WP_023974847.1\|449456_449906_+	ribose 5-phosphate isomerase B	NA	NA	NA	NA
WP_011967757.1\|450096_450726_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_011967758.1\|450807_451302_+	cytidine deaminase	A0A2H5BMD7	Streptomyces_phage	3.0e-16	39.4
WP_011967759.1\|451539_452730_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	1.6e-26	27.0
WP_023974849.1\|452851_454033_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_023974850.1\|454753_455119_+	hypothetical protein	NA	NA	NA	NA
WP_077723628.1\|455111_455801_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA
WP_017209887.1\|455855_456071_+	ATP synthase F0 subunit C	NA	NA	NA	NA
WP_023974852.1\|456123_456603_+	ATP synthase subunit B	NA	NA	NA	NA
WP_011967764.1\|456605_457145_+	ATP synthase subunit delta	NA	NA	NA	NA
WP_011967765.1\|457155_458670_+	ATP synthase subunit alpha	NA	NA	NA	NA
WP_011967766.1\|458711_459563_+	ATP synthase subunit gamma	NA	NA	NA	NA
WP_011967767.1\|459577_460969_+	ATP synthase subunit beta	NA	NA	NA	NA
WP_011967768.1\|460984_461392_+	ATP synthase epsilon chain	NA	NA	NA	NA
WP_011967769.1\|461606_462257_+	hypothetical protein	NA	NA	NA	NA
WP_023974853.1\|462418_463681_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_011967771.1\|464247_465306_+	stage II sporulation protein D	Q2XU88	Pseudomonas_phage	3.0e-37	35.1
WP_077723629.1\|465731_466484_+	M23 family peptidase	NA	NA	NA	NA
WP_011967773.1\|466591_466846_+	sporulation transcriptional regulator SpoIIID	M9Q261	Clostridium_phage	5.7e-19	56.4
WP_011967774.1\|466925_467960_+	rod shape-determining protein	NA	NA	NA	NA
WP_023974855.1\|468027_468564_-\|protease	spore protease YyaC	NA	NA	NA	NA
WP_011967776.1\|468664_469069_+	hypothetical protein	NA	NA	NA	NA
WP_011967777.1\|470335_471511_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.6e-151	67.6
WP_023974856.1\|471962_474191_+	ATP-dependent RecD-like DNA helicase	A0A0K2FLP8	Brevibacillus_phage	3.2e-65	30.4
WP_023974857.1\|474209_475226_+	hypothetical protein	NA	NA	NA	NA
WP_011967780.1\|475198_475855_+	amidophosphoribosyltransferase	NA	NA	NA	NA
WP_011967781.1\|476270_476804_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_023974858.1\|477148_479707_+	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_023974859.1\|480001_480976_+	peptide chain release factor 2	W8EDB3	Pseudomonas_phage	2.1e-05	41.5
WP_017213034.1\|481110_481443_-	hypothetical protein	NA	NA	NA	NA
WP_017213033.1\|481637_482333_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	3.8e-41	40.5
WP_023974860.1\|482322_483822_+	sensor histidine kinase	W8CYF6	Bacillus_phage	8.6e-30	26.5
WP_023974861.1\|484020_484932_+\|protease	site-2 protease family protein	NA	NA	NA	NA

DBSCAN-SWA_2

1002600 : 1016068

Clostridium_phage(64.29%)

integrase

attL 989123:989138|attR 1018805:1018820

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
989123:989138	attL	NA	NA	NA	NA
WP_023973976.1\|1002600_1003503_-	NAD-dependent DNA ligase	M1PFD8	Streptococcus_phage	1.2e-05	37.5
WP_023973975.1\|1003593_1003935_-	XRE family transcriptional regulator	A0A1L2BY72	Clostridium_phage	6.9e-28	60.0
WP_023973974.1\|1004110_1004302_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_023973973.1\|1004352_1004784_+	XRE family transcriptional regulator	A0A1L2BY71	Clostridium_phage	1.2e-64	88.1
WP_023973971.1\|1005040_1005340_+	hypothetical protein	A0A1L2BY79	Clostridium_phage	2.0e-23	81.0
WP_011968234.1\|1005430_1005613_+	hypothetical protein	A0A1L2BY78	Clostridium_phage	3.3e-21	86.4
WP_023973970.1\|1005660_1006473_+	helix-turn-helix domain-containing protein	A0A1L2BY83	Clostridium_phage	8.1e-67	50.4
WP_054249150.1\|1006465_1007245_+	hypothetical protein	A0A1L2BY85	Clostridium_phage	8.0e-72	55.6
WP_023973969.1\|1007516_1007840_-	hypothetical protein	NA	NA	NA	NA
WP_023973968.1\|1007862_1008180_-	hypothetical protein	NA	NA	NA	NA
WP_023973967.1\|1008202_1008520_-	hypothetical protein	NA	NA	NA	NA
WP_023973965.1\|1008990_1009314_-	hypothetical protein	NA	NA	NA	NA
WP_023973963.1\|1009682_1010075_+	sigma factor	A0A1L2BY86	Clostridium_phage	1.5e-55	89.2
WP_023973962.1\|1010312_1010495_+	hypothetical protein	A0A1L2BY88	Clostridium_phage	2.0e-18	67.2
WP_023973961.1\|1010510_1011116_+\|integrase	integrase	A0A1L2BY87	Clostridium_phage	7.6e-102	92.0
WP_023973960.1\|1011403_1011616_+	hypothetical protein	NA	NA	NA	NA
WP_023973959.1\|1011612_1011840_+	hypothetical protein	NA	NA	NA	NA
WP_023973958.1\|1011826_1012249_+	hypothetical protein	NA	NA	NA	NA
WP_077723633.1\|1012323_1012503_-	hypothetical protein	A0A0C5AEA5	Paenibacillus_phage	1.9e-13	57.6
WP_023973957.1\|1012686_1014168_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.7e-110	48.1
WP_023973956.1\|1014693_1015308_-\|integrase	integrase	A0A0C5AEA5	Paenibacillus_phage	8.1e-27	49.0
WP_077723634.1\|1015852_1016068_+	hypothetical protein	S6B9W8	Thermus_phage	8.0e-06	59.5
1018805:1018820	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1171265 : 1181492

Cyanophage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023973459.1\|1171265_1175012_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	5.7e-30	24.8
WP_017210869.1\|1175441_1175921_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	5.9e-25	42.4
WP_023973458.1\|1175920_1176628_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4SM18	Cyanophage	3.1e-46	43.8
WP_023973457.1\|1176883_1178299_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.0e-56	33.5
WP_023973456.1\|1178369_1179371_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SQF5	Cyanophage	6.5e-66	45.5
WP_023973455.1\|1179358_1179970_+	phosphoribosylglycinamide formyltransferase	R9S626	Prochlorococcus_phage	1.0e-21	36.2
WP_023973454.1\|1179983_1181492_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	E3SNU8	Prochlorococcus_phage	4.0e-35	45.0

DBSCAN-SWA_4

1215148 : 1226666

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023973432.1\|1215148_1216495_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	3.2e-92	42.5
WP_023973431.1\|1216512_1217721_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_023973430.1\|1217837_1218704_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_023973429.1\|1218716_1219655_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	8.4e-100	61.5
WP_023973428.1\|1219641_1220223_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.8e-53	55.1
WP_023973427.1\|1220302_1221211_+	dTDP-4-dehydrorhamnose reductase	H9NCE8	Sphingomonas_phage	9.9e-13	28.6
WP_023973426.1\|1221210_1222260_+	dTDP-glucose 4,6-dehydratase	A0A1D8EQC0	Escherichia_phage	9.1e-79	47.1
WP_023973425.1\|1222291_1223143_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	9.9e-15	38.1
WP_023973424.1\|1223170_1224352_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_031275581.1\|1224363_1225620_+	hypothetical protein	NA	NA	NA	NA
WP_051398412.1\|1225643_1226666_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	4.2e-12	34.4

DBSCAN-SWA_5

2493336 : 2497818

Clostridium_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012058440.1\|2493336_2493696_-	XRE family transcriptional regulator	B6SBW8	Clostridium_virus	1.0e-13	40.4
WP_023975159.1\|2494014_2494212_+	transcriptional regulator	A0A0A7RTP5	Clostridium_phage	1.2e-08	53.3
WP_023975158.1\|2494700_2496062_+	replisome organizer region-containing protein	A8ASN4	Listeria_phage	1.1e-28	51.7
WP_031275900.1\|2496111_2496738_+	ATPase AAA	A0A0K2CPA5	Brevibacillus_phage	3.6e-30	39.5
WP_012058444.1\|2496851_2497094_+	AbrB family transcriptional regulator	A0A2I7SC16	Paenibacillus_phage	2.7e-10	48.6
WP_023975156.1\|2497509_2497818_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	7.4e-13	44.9

DBSCAN-SWA_6

2553771 : 2560492

Clostridium_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012058485.1\|2553771_2554131_-	XRE family transcriptional regulator	B6SBW8	Clostridium_virus	2.3e-13	40.4
WP_012058486.1\|2554589_2554787_+	transcriptional regulator	A0A0A7RTP5	Clostridium_phage	2.7e-08	51.7
WP_012058487.1\|2554905_2555166_+	hypothetical protein	NA	NA	NA	NA
WP_023975103.1\|2555393_2556743_+	replisome organizer region-containing protein	Q7Y4K5	Streptococcus_phage	8.8e-26	51.8
WP_012058489.1\|2556792_2557419_+	ATPase AAA	Q0H276	Geobacillus_phage	1.4e-29	41.9
WP_009168788.1\|2557533_2557776_+	AbrB family transcriptional regulator	A0A2I7SC16	Paenibacillus_phage	5.8e-13	52.7
WP_012058490.1\|2557777_2558170_+	hypothetical protein	NA	NA	NA	NA
WP_012058491.1\|2558248_2559004_+	phage antirepressor Ant	A0A2R2ZGJ4	Clostridioides_phage	7.9e-40	39.4
WP_009168791.1\|2559082_2559301_-	DUF2922 domain-containing protein	NA	NA	NA	NA
WP_012058448.1\|2559416_2559641_-	DUF1659 domain-containing protein	NA	NA	NA	NA
WP_023975102.1\|2559775_2560201_+	hypothetical protein	A0A1L2BY85	Clostridium_phage	1.7e-31	55.1
WP_023975101.1\|2560282_2560492_+	hypothetical protein	A0A1L2BY85	Clostridium_phage	3.8e-13	55.4

DBSCAN-SWA_7

2921016 : 2953949

uncultured_Caudovirales_phage(40.74%)

portal,tail,terminase,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023976332.1\|2921016_2921643_+	hypothetical protein	A0A1S5SFL0	Streptococcus_phage	2.1e-14	30.3
WP_023976331.1\|2922055_2922772_+	hypothetical protein	NA	NA	NA	NA
WP_023976330.1\|2922947_2923640_+	recombinase family protein	H2A0H0	Bacteroides_phage	6.8e-06	23.9
WP_023976329.1\|2923747_2923945_+	addiction module toxin, HicA family	A0A1L2JY37	Aeribacillus_phage	1.1e-14	53.2
WP_023976328.1\|2923999_2924404_+	HicB family protein	A0A090DBV2	Clostridium_phage	8.7e-46	66.7
WP_023976327.1\|2924497_2925271_+	hypothetical protein	A0A1L2BWH4	Clostridium_phage	4.4e-38	47.1
WP_023976326.1\|2925270_2926605_+\|terminase	PBSX family phage terminase large subunit	A0A2P1JTW5	Anoxybacillus_phage	1.5e-147	67.1
WP_023976325.1\|2926746_2928288_+\|portal	phage portal protein	A0A0A7RW62	Clostridium_phage	3.2e-173	62.9
WP_023976323.1\|2930133_2930331_+	hypothetical protein	NA	NA	NA	NA
WP_023976322.1\|2930574_2931228_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	6.9e-08	33.3
WP_023976320.1\|2931906_2932155_+	DNA-binding protein	NA	NA	NA	NA
WP_023976319.1\|2932182_2932578_+	hypothetical protein	NA	NA	NA	NA
WP_023976318.1\|2932620_2933241_+	hypothetical protein	A0A0A7RW68	Clostridium_phage	2.1e-43	51.0
WP_023976317.1\|2933261_2933618_+	hypothetical protein	A0A2H4J872	uncultured_Caudovirales_phage	1.6e-27	52.9
WP_023976316.1\|2933636_2934665_+\|capsid	phage capsid protein	A0A1J1GG50	Clostridium_phage	9.7e-158	80.4
WP_023976315.1\|2934720_2934966_+	hypothetical protein	NA	NA	NA	NA
WP_034851843.1\|2934977_2935298_+	hypothetical protein	A0A2H4J040	uncultured_Caudovirales_phage	2.4e-30	62.7
WP_054249111.1\|2935294_2935684_+	hypothetical protein	A0A2H4J057	uncultured_Caudovirales_phage	2.5e-26	47.7
WP_023976312.1\|2935684_2936110_+	hypothetical protein	A0A2H4J736	uncultured_Caudovirales_phage	2.3e-20	39.9
WP_023976311.1\|2936112_2936940_+	hypothetical protein	A0A2H4J4Q0	uncultured_Caudovirales_phage	1.2e-94	61.1
WP_031276186.1\|2937045_2937225_+	hypothetical protein	A0A0A8WEX5	Clostridium_phage	2.0e-10	61.1
WP_023976309.1\|2937227_2938640_+\|portal	phage portal protein	A0A2H4J1N7	uncultured_Caudovirales_phage	3.2e-143	54.3
WP_023976308.1\|2938655_2939066_+\|portal	phage portal protein	A0A2H4J032	uncultured_Caudovirales_phage	6.8e-46	64.4
WP_023976307.1\|2939129_2939561_+	hypothetical protein	A0A2H4J883	uncultured_Caudovirales_phage	2.5e-27	47.1
WP_023976305.1\|2939739_2943876_+\|tail	phage tail tape measure protein	D9ZNE6	Clostridium_phage	5.9e-97	52.7
WP_054249110.1\|2943918_2944296_+	hypothetical protein	NA	NA	NA	NA
WP_054249109.1\|2944322_2944574_+	hypothetical protein	NA	NA	NA	NA
WP_023976303.1\|2944648_2945338_+	SH3 domain-containing protein	A0A2H4J045	uncultured_Caudovirales_phage	2.2e-57	51.8
WP_023976302.1\|2945348_2946323_+	hypothetical protein	A0A2H4J063	uncultured_Caudovirales_phage	1.7e-79	48.6
WP_023976301.1\|2946312_2946648_+	hypothetical protein	A0A0A8WFG6	Clostridium_phage	4.7e-13	40.4
WP_023976300.1\|2946640_2947078_+	DUF2634 domain-containing protein	A0A2H4J4Q8	uncultured_Caudovirales_phage	3.7e-26	50.0
WP_023976299.1\|2947084_2948215_+	hypothetical protein	A0A0A8WEY6	Clostridium_phage	1.4e-101	52.3
WP_023976298.1\|2948211_2949909_+	DUF2313 domain-containing protein	J9QE20	Clostridium_phage	1.0e-31	42.9
WP_023976297.1\|2949905_2950199_+	hypothetical protein	NA	NA	NA	NA
WP_023976296.1\|2950202_2953949_+	hypothetical protein	G3MAG1	Bacillus_virus	3.2e-33	30.2

DBSCAN-SWA_8

3805036 : 3810845

Clostridium_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023973787.1\|3805036_3805279_-	AbrB family transcriptional regulator	A0A2I7SC16	Paenibacillus_phage	3.4e-13	51.4
WP_051398420.1\|3805604_3806186_-	AAA family ATPase	Q0H276	Geobacillus_phage	4.3e-30	43.5
WP_023973790.1\|3806280_3807267_-	DnaD domain protein	V5UQV4	Oenococcus_phage	2.0e-35	55.6
WP_031275646.1\|3807344_3808115_-	hypothetical protein	A0A0A7RW37	Clostridium_phage	2.9e-66	52.4
WP_023973791.1\|3808174_3809089_-	hypothetical protein	A0A0A7RWR9	Clostridium_phage	9.3e-104	57.6
WP_023973792.1\|3809324_3809537_-	hypothetical protein	NA	NA	NA	NA
WP_023973793.1\|3809754_3810225_+	XRE family transcriptional regulator	Q786F1	Bacillus_phage	8.1e-11	34.8
WP_069955989.1\|3810374_3810845_+	ImmA/IrrE family metallo-endopeptidase	Q9T201	Bacillus_phage	7.6e-17	38.9

DBSCAN-SWA_9

4005761 : 4018720

Clostridium_phage(83.33%)

tail,terminase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023974402.1\|4005761_4005995_-	membrane protein	A0A0A7S0T7	Clostridium_phage	4.1e-16	51.9
WP_077723678.1\|4006158_4006374_-	hypothetical protein	S6B9W8	Thermus_phage	4.7e-06	59.5
WP_023974404.1\|4006366_4006645_-	hypothetical protein	NA	NA	NA	NA
WP_023974406.1\|4007881_4008655_-	hypothetical protein	NA	NA	NA	NA
WP_023974407.1\|4008826_4009480_-\|tail	tail fiber protein	A0A0A7RTP0	Clostridium_phage	7.2e-50	57.6
WP_023974408.1\|4009481_4010186_-	DUF2313 domain-containing protein	A0A0A7RTT8	Clostridium_phage	2.3e-41	44.8
WP_023974409.1\|4010178_4011285_-\|plate	baseplate J protein	A0A0A7RUN3	Clostridium_phage	2.5e-50	35.7
WP_023974410.1\|4011277_4011718_-	DUF2634 domain-containing protein	A0A0A7S0E2	Clostridium_phage	2.3e-23	44.8
WP_017210964.1\|4011710_4012034_-	DUF2577 domain-containing protein	NA	NA	NA	NA
WP_023974411.1\|4012033_4013038_-	hypothetical protein	A0A0A7RTP6	Clostridium_phage	7.7e-59	37.7
WP_031275726.1\|4013034_4013514_-	hypothetical protein	A0A090DBR9	Clostridium_phage	5.4e-18	32.0
WP_023974413.1\|4013527_4015948_-	hypothetical protein	A0A2K9V3N5	Faecalibacterium_phage	3.7e-06	33.3
WP_023974414.1\|4016123_4016528_-	hypothetical protein	A0A0A7RTP2	Clostridium_phage	8.2e-28	48.4
WP_012059574.1\|4017154_4017586_-\|terminase	terminase	A0A0A7RVT1	Clostridium_phage	3.8e-39	58.1
WP_023974415.1\|4017598_4018720_-\|terminase	terminase	A0A0A7S0D2	Clostridium_phage	1.3e-83	46.5

DBSCAN-SWA_10

5778911 : 5855129

Bacillus_phage(16.67%)

transposase,integrase,protease

attL 5850398:5850420|attR 5857404:5857426

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054249042.1\|5778911_5780867_-\|integrase	integrase	NA	NA	NA	NA
WP_023977087.1\|5780859_5781987_-\|transposase	transposase	NA	NA	NA	NA
WP_012060955.1\|5782282_5782549_-	hypothetical protein	NA	NA	NA	NA
WP_023976999.1\|5782817_5783303_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA
WP_023977000.1\|5783311_5784640_-	6-phospho-alpha-glucosidase	NA	NA	NA	NA
WP_012060958.1\|5784661_5786257_-	PTS glucose transporter subunit IIBC	NA	NA	NA	NA
WP_031276441.1\|5786497_5787223_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_023977002.1\|5787408_5789172_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.2e-11	34.2
WP_023977003.1\|5789472_5790660_-	amidohydrolase	NA	NA	NA	NA
WP_012059009.1\|5791079_5792381_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_051144873.1\|5792528_5793572_-\|protease	CPBP family intramembrane metalloprotease domain-containing protein	NA	NA	NA	NA
WP_023975961.1\|5793580_5794378_-	carbon-nitrogen family hydrolase	NA	NA	NA	NA
WP_023975962.1\|5794478_5794823_-	MIF domain	NA	NA	NA	NA
WP_023975963.1\|5795370_5795760_+	response regulator	NA	NA	NA	NA
WP_023975964.1\|5795789_5798729_+	hybrid sensor histidine kinase/response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	4.4e-30	28.2
WP_023975965.1\|5798770_5799133_+	hypothetical protein	NA	NA	NA	NA
WP_031276086.1\|5799251_5799662_-	hemerythrin	NA	NA	NA	NA
WP_012060969.1\|5799902_5800130_-	hypothetical protein	NA	NA	NA	NA
WP_012060970.1\|5800163_5800571_-	hemerythrin	NA	NA	NA	NA
WP_023975967.1\|5800689_5801097_-	response regulator	A0A2K9L4R0	Tupanvirus	2.0e-05	27.6
WP_023975968.1\|5801123_5802596_-	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	3.9e-43	45.1
WP_023975969.1\|5802637_5804242_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_023975970.1\|5804257_5804755_-	chemotaxis protein CheW	NA	NA	NA	NA
WP_023975971.1\|5804789_5807414_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_023975972.1\|5807512_5807884_-	DNA-binding response regulator	NA	NA	NA	NA
WP_023975973.1\|5808326_5808983_+	DNA-binding response regulator	NA	NA	NA	NA
WP_023975974.1\|5808994_5810020_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA
WP_017212173.1\|5810062_5810878_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_023975975.1\|5810893_5812615_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_054249041.1\|5812667_5814716_-	chemotaxis protein CheA	NA	NA	NA	NA
WP_023975978.1\|5814973_5815708_-	chemotaxis protein MotB	NA	NA	NA	NA
WP_023975979.1\|5815725_5816511_-	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_023975980.1\|5817086_5818811_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.1e-09	41.7
WP_023975981.1\|5819101_5820544_-	glycoside hydrolase family 1 protein	A0A0B5JD41	Pandoravirus	2.0e-47	29.3
WP_023975982.1\|5820965_5821661_-	manganese catalase	NA	NA	NA	NA
WP_012060987.1\|5821983_5823090_-	DUF362 domain-containing protein	NA	NA	NA	NA
WP_023975983.1\|5823473_5824265_-	AAC(3) family N-acetyltransferase	O64018	Bacillus_phage	7.2e-52	40.2
WP_023975984.1\|5824290_5825142_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_023975985.1\|5825188_5826238_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_023975986.1\|5826269_5827241_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_023975987.1\|5827275_5828376_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_023975990.1\|5829716_5832734_-	hypothetical protein	NA	NA	NA	NA
WP_077723702.1\|5832958_5833996_-	hypothetical protein	NA	NA	NA	NA
WP_023975992.1\|5834057_5835083_-	hypothetical protein	NA	NA	NA	NA
WP_023975993.1\|5835328_5836579_-	hypothetical protein	NA	NA	NA	NA
WP_023975994.1\|5836705_5838310_-	LlaJI family restriction endonuclease	NA	NA	NA	NA
WP_023975995.1\|5838351_5840262_-	hypothetical protein	Q6DMW9	Streptococcus_phage	3.5e-36	33.3
WP_023975996.1\|5840377_5841604_-	DNA (cytosine-5-)-methyltransferase	F2Y148	Organic_Lake_phycodnavirus	8.6e-20	28.3
WP_023975997.1\|5841616_5842870_-	DNA (cytosine-5-)-methyltransferase	M1PSQ0	Streptococcus_phage	2.4e-57	38.5
WP_077723703.1\|5842947_5843748_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA
WP_051398448.1\|5843857_5845609_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.2e-32	28.2
WP_023977061.1\|5846693_5847281_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_023977062.1\|5847340_5847583_-	hypothetical protein	NA	NA	NA	NA
WP_023977063.1\|5847894_5848419_+	hypothetical protein	NA	NA	NA	NA
WP_023977064.1\|5848516_5848717_+	YvrJ family protein	NA	NA	NA	NA
5850398:5850420	attL	NA	NA	NA	NA
WP_023977066.1\|5850823_5851210_-	hypothetical protein	NA	NA	NA	NA
WP_023977083.1\|5852038_5853166_+\|transposase	transposase	NA	NA	NA	NA
WP_031276454.1\|5853158_5855129_+\|integrase	integrase	A0A2H4J2U1	uncultured_Caudovirales_phage	9.6e-05	25.1
5857404:5857426	attR	NA	NA	NA	NA

DBSCAN-SWA_11

5865200 : 5874721

Clostridium_phage(37.5%)

integrase

attL 5860332:5860348|attR 5887084:5887100

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5860332:5860348	attL	NA	NA	NA	NA
WP_023975303.1\|5865200_5865917_-	hypothetical protein	A0A1L2BY85	Clostridium_phage	2.0e-61	55.0
WP_009168792.1\|5866051_5866276_+	DUF1659 domain-containing protein	NA	NA	NA	NA
WP_023975304.1\|5866319_5866538_+	DUF2922 domain-containing protein	NA	NA	NA	NA
WP_023975306.1\|5867454_5867847_-	hypothetical protein	NA	NA	NA	NA
WP_023975307.1\|5867851_5868091_-	AbrB family transcriptional regulator	A0A2I7SC16	Paenibacillus_phage	7.5e-13	52.7
WP_023975308.1\|5868205_5868832_-	ATPase AAA	Q0H276	Geobacillus_phage	5.2e-29	41.4
WP_023975309.1\|5868881_5870198_-	replisome organizer region-containing protein	V5UQV4	Oenococcus_phage	1.0e-26	51.7
WP_051398436.1\|5870339_5870570_-	hypothetical protein	NA	NA	NA	NA
WP_008423918.1\|5870588_5870810_-	DNA-binding protein	A0A2I7SCU5	Paenibacillus_phage	5.5e-10	51.5
WP_008423917.1\|5870926_5871151_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_023975312.1\|5871403_5871778_+	XRE family transcriptional regulator	A0A090D830	Clostridium_phage	1.8e-13	38.1
WP_023975314.1\|5872133_5873291_+\|integrase	site-specific integrase	A0A0A8WIF9	Clostridium_phage	5.1e-107	51.4
WP_023975315.1\|5873356_5874721_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	5.9e-102	41.9
5887084:5887100	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011966

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection