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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_023037 Paenibacillus polymyxa CR1, complete sequence 5 crisprs csa3,WYL,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas2,DinG 0 4 8 0

Results visualization

1. NC_023037
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_023037_1 2299613-2299976 TypeI I-C:NA
5 spacers
cas3,cas5,cas8c,cas7,cas4,cas2

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_023037_2 2309327-2309694 TypeI NA
5 spacers
cas2,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_023037_3 2316293-2317198 TypeI I-C:NA
13 spacers
cas2,cas4,cas7,cas8c

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_023037_4 2318669-2319030 TypeI I-C:NA
5 spacers
cas2,cas4,cas7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_023037_5 5170703-5170794 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_023037_4 4.1|2318701|34|NC_023037|PILER-CR,CRISPRCasFinder,CRT 2318701-2318734 34 NC_006959 Bacillus licheniformis, plasmid pBL63.1 complete genome 1018-1051 7 0.794
NC_023037_3 3.13|2317133|33|NC_023037|CRISPRCasFinder,CRT 2317133-2317165 33 MT478991 Escherichia phage vB_EcoM_011D4, complete genome 74451-74483 8 0.758
NC_023037_3 3.13|2317133|33|NC_023037|CRISPRCasFinder,CRT 2317133-2317165 33 MF327006 Shigella phage Sf20, complete genome 59517-59549 8 0.758
NC_023037_3 3.13|2317133|33|NC_023037|CRISPRCasFinder,CRT 2317133-2317165 33 AY343333 Enterobacteria phage RB49, complete genome 123448-123480 8 0.758
NC_023037_3 3.13|2317133|33|NC_023037|CRISPRCasFinder,CRT 2317133-2317165 33 MK573636 Escherichia phage vB_EcoM_PHB13, partial genome 111380-111412 8 0.758
NC_023037_4 4.3|2318834|34|NC_023037|PILER-CR,CRISPRCasFinder,CRT 2318834-2318867 34 NC_014838 Pantoea sp. At-9b plasmid pPAT9B01, complete sequence 382811-382844 8 0.765
NC_023037_1 1.2|2299714|37|NC_023037|PILER-CR,CRISPRCasFinder 2299714-2299750 37 NC_017805 Deinococcus gobiensis I-0 plasmid P1, complete sequence 108567-108603 9 0.757
NC_023037_3 3.13|2317133|33|NC_023037|CRISPRCasFinder,CRT 2317133-2317165 33 MN655998 Escherichia phage E26, complete genome 123211-123243 9 0.727
NC_023037_3 3.13|2317133|33|NC_023037|CRISPRCasFinder,CRT 2317133-2317165 33 MH560358 Escherichia virus KFS-EC, complete genome 67484-67516 9 0.727
NC_023037_3 3.13|2317133|33|NC_023037|CRISPRCasFinder,CRT 2317133-2317165 33 MK327941 Escherichia phage vB_EcoM_G37-3, complete genome 125390-125422 9 0.727
NC_023037_3 3.13|2317133|33|NC_023037|CRISPRCasFinder,CRT 2317133-2317165 33 MK327932 Escherichia phage vB_EcoM_G2248, complete genome 130206-130238 9 0.727
NC_023037_3 3.13|2317133|33|NC_023037|CRISPRCasFinder,CRT 2317133-2317165 33 MK327935 Escherichia phage vB_EcoM_G2494, complete genome 126400-126432 9 0.727
NC_023037_3 3.13|2317133|33|NC_023037|CRISPRCasFinder,CRT 2317133-2317165 33 NC_012740 Enterobacteria phage JSE, complete genome 127188-127220 9 0.727
NC_023037_4 4.1|2318701|34|NC_023037|PILER-CR,CRISPRCasFinder,CRT 2318701-2318734 34 NC_019306 Psychrobacter sp. DAB_AL43B plasmid pP43BP3, complete sequence 3420-3453 9 0.735
NC_023037_4 4.1|2318701|34|NC_023037|PILER-CR,CRISPRCasFinder,CRT 2318701-2318734 34 NZ_CP012540 Psychrobacter sp. P11G5 plasmid pPspP11G5g, complete sequence 3870-3903 9 0.735
NC_023037_4 4.1|2318701|34|NC_023037|PILER-CR,CRISPRCasFinder,CRT 2318701-2318734 34 MN657048 Psychrobacter sp. strain ANT_H19 plasmid pA19H2, complete sequence 6268-6301 10 0.706
NC_023037_1 1.2|2299714|37|NC_023037|PILER-CR,CRISPRCasFinder 2299714-2299750 37 NZ_CP023549 Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence 280244-280280 11 0.703

1. spacer 4.1|2318701|34|NC_023037|PILER-CR,CRISPRCasFinder,CRT matches to NC_006959 (Bacillus licheniformis, plasmid pBL63.1 complete genome) position: , mismatch: 7, identity: 0.794

tcagaagcaacttcttcgtccgttttatcctcaa	CRISPR spacer
tctttcgccacttcttcgtctgttttatcctcta	Protospacer
**    ** ***********.*********** *

2. spacer 3.13|2317133|33|NC_023037|CRISPRCasFinder,CRT matches to MT478991 (Escherichia phage vB_EcoM_011D4, complete genome) position: , mismatch: 8, identity: 0.758

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctctgcttttagcttgtctg	Protospacer
********.***************.    *..*

3. spacer 3.13|2317133|33|NC_023037|CRISPRCasFinder,CRT matches to MF327006 (Shigella phage Sf20, complete genome) position: , mismatch: 8, identity: 0.758

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctctgcttttagcttgtctg	Protospacer
********.***************.    *..*

4. spacer 3.13|2317133|33|NC_023037|CRISPRCasFinder,CRT matches to AY343333 (Enterobacteria phage RB49, complete genome) position: , mismatch: 8, identity: 0.758

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctctgcttttagcttgtctg	Protospacer
********.***************.    *..*

5. spacer 3.13|2317133|33|NC_023037|CRISPRCasFinder,CRT matches to MK573636 (Escherichia phage vB_EcoM_PHB13, partial genome) position: , mismatch: 8, identity: 0.758

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctctgcttttagcttgtctg	Protospacer
********.***************.    *..*

6. spacer 4.3|2318834|34|NC_023037|PILER-CR,CRISPRCasFinder,CRT matches to NC_014838 (Pantoea sp. At-9b plasmid pPAT9B01, complete sequence) position: , mismatch: 8, identity: 0.765

tcgtgtatgccggatcatatcgcctttgcctgcg	CRISPR spacer
cagagtgtgccggatcataccgcctttgcgtctg	Protospacer
. * **.************.********* * .*

7. spacer 1.2|2299714|37|NC_023037|PILER-CR,CRISPRCasFinder matches to NC_017805 (Deinococcus gobiensis I-0 plasmid P1, complete sequence) position: , mismatch: 9, identity: 0.757

catctgccccaagcaccgccagcccgcccgctacgcc---	CRISPR spacer
agccggcccccagcgccgccagcccgcccg---cgcccag	Protospacer
 ..* ***** ***.***************   ****   

8. spacer 3.13|2317133|33|NC_023037|CRISPRCasFinder,CRT matches to MN655998 (Escherichia phage E26, complete genome) position: , mismatch: 9, identity: 0.727

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctatcatctctgcttttagcttgtctg	Protospacer
********..**************.    *..*

9. spacer 3.13|2317133|33|NC_023037|CRISPRCasFinder,CRT matches to MH560358 (Escherichia virus KFS-EC, complete genome) position: , mismatch: 9, identity: 0.727

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctcggcttttagcttgtctg	Protospacer
********.******* *******.    *..*

10. spacer 3.13|2317133|33|NC_023037|CRISPRCasFinder,CRT matches to MK327941 (Escherichia phage vB_EcoM_G37-3, complete genome) position: , mismatch: 9, identity: 0.727

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctcggcttttagcttgtctg	Protospacer
********.******* *******.    *..*

11. spacer 3.13|2317133|33|NC_023037|CRISPRCasFinder,CRT matches to MK327932 (Escherichia phage vB_EcoM_G2248, complete genome) position: , mismatch: 9, identity: 0.727

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctcggcttttagcttgtctg	Protospacer
********.******* *******.    *..*

12. spacer 3.13|2317133|33|NC_023037|CRISPRCasFinder,CRT matches to MK327935 (Escherichia phage vB_EcoM_G2494, complete genome) position: , mismatch: 9, identity: 0.727

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctcggcttttagcttgtctg	Protospacer
********.******* *******.    *..*

13. spacer 3.13|2317133|33|NC_023037|CRISPRCasFinder,CRT matches to NC_012740 (Enterobacteria phage JSE, complete genome) position: , mismatch: 9, identity: 0.727

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctcggcttttagcttgtctg	Protospacer
********.******* *******.    *..*

14. spacer 4.1|2318701|34|NC_023037|PILER-CR,CRISPRCasFinder,CRT matches to NC_019306 (Psychrobacter sp. DAB_AL43B plasmid pP43BP3, complete sequence) position: , mismatch: 9, identity: 0.735

tcagaagcaacttcttcgtccgttttatcctcaa	CRISPR spacer
tttctgaccacttcttcgtgcgttttatcgtcaa	Protospacer
*.   ..* ********** ********* ****

15. spacer 4.1|2318701|34|NC_023037|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012540 (Psychrobacter sp. P11G5 plasmid pPspP11G5g, complete sequence) position: , mismatch: 9, identity: 0.735

tcagaagcaacttcttcgtccgttttatcctcaa	CRISPR spacer
tttctgactacttcttcgtgcgttttatcgtcaa	Protospacer
*.   ..* ********** ********* ****

16. spacer 4.1|2318701|34|NC_023037|PILER-CR,CRISPRCasFinder,CRT matches to MN657048 (Psychrobacter sp. strain ANT_H19 plasmid pA19H2, complete sequence) position: , mismatch: 10, identity: 0.706

tcagaagcaacttcttcgtccgttttatcctcaa	CRISPR spacer
cttctgaccacttcttcgtgcgttttatcgtcaa	Protospacer
..   ..* ********** ********* ****

17. spacer 1.2|2299714|37|NC_023037|PILER-CR,CRISPRCasFinder matches to NZ_CP023549 (Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.703

catctgccccaagcaccgccagcccgcccgctacgcc	CRISPR spacer
tggcggcgccaagcaccgccagccggcccgcgctctc	Protospacer
.. * ** **************** ******  . .*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 813718 : 825467 10 Mollivirus(25.0%) NA NA
DBSCAN-SWA_2 1209216 : 1231042 21 Bacillus_phage(43.75%) portal,plate,tail,holin NA
DBSCAN-SWA_3 1375550 : 1394147 39 Paenibacillus_phage(27.27%) integrase attL 1369045:1369057|attR 1381293:1381305
DBSCAN-SWA_4 1399510 : 1424319 32 Brevibacillus_phage(48.0%) portal,plate,terminase,tail,holin,capsid NA
DBSCAN-SWA_5 1542342 : 1581301 30 Brevibacillus_phage(89.29%) NA NA
DBSCAN-SWA_6 1849848 : 1859253 7 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_7 3506883 : 3514170 9 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_8 5207085 : 5245741 57 Paenibacillus_phage(30.77%) plate,portal,tRNA,terminase,tail,holin,integrase attL 5203514:5203531|attR 5243827:5243844
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage