CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_023064	Pseudomonas sp. TKP, complete sequence	4 crisprs	RT,csa3,DEDDh,DinG,cas3,WYL	1	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_023064_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023064_1

733838-733968

Orphan

Consensus_repeat	Method
ACCAGGCCTTTCTCTTCCAGGCGATTACGGCCATTTTCAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_023064_1

>merge|NC_023064|1|733838-733968|CRISPRCasFinder
ACCAGGCCTTTCTCTTCCAGGCGATTACGGCCATTTTCAGCGACGCCTTGGGTGTAGGCACGGTCGTTGGCTTGTTCAGCGCCGCCCTCTACCAGGCCTTTCTCTTCCAGGCGATTACGGCCATTCTCAGC

>NC_023064|1|1|733838-733968|CRISPRCasFinder
ACCAGGCCTTTCTCTTCCAGGCGATTACGGCCATTTTCAGC	GACGCCTTGGGTGTAGGCACGGTCGTTGGCTTGTTCAGCGCCGCCCTCT
ACCAGGCCTTTCTCTTCCAGGCGATTACGGCCATTCTCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_023064.1\|WP_024073119.1\|732382_732904_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NC_023064.1\|WP_024073129.1\|742055_743324_-\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212673
NC_023064.1\|WP_024073120.1\|732909_733542_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236881
NC_023064.1\|WP_024073127.1\|740270_740570_+\|phosphate-starvation-inducible-protein-PsiF	unknown	unknown	gnl\|CDD\|183165
NC_023064.1\|WP_012721947.1\|730219_730834_-\|urease-accessory-protein-UreG	unknown	unknown	gnl\|CDD\|349776
NC_023064.1\|WP_024073115.1\|728332_729454_-\|AGE-family-epimerase/isomerase	unknown	unknown	gnl\|CDD\|225493
NC_023064.1\|WP_024073118.1\|731544_732045_-\|urease-accessory-protein-UreE	unknown	unknown	gnl\|CDD\|237322
NC_023064.1\|WP_024073124.1\|737510_738401_+\|triacylglycerol-lipase	unknown	unknown	gnl\|CDD\|224001
NC_023064.1\|WP_041160827.1\|727368_728274_+\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|226474
NC_023064.1\|WP_024073126.1\|739410_740199_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380379
NC_023064.1\|WP_024073128.1\|740746_741760_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NC_023064.1\|WP_024073117.1\|730873_731548_-\|urease-accessory-protein-UreF	unknown	unknown	gnl\|CDD\|223900
NC_023064.1\|WP_024073123.1\|736803_737334_-\|bacterioferritin	unknown	unknown	gnl\|CDD\|225104
NC_023064.1\|WP_024073130.1\|743609_744554_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NC_023064.1\|WP_024073112.1\|724847_725564_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223487
NC_023064.1\|WP_143036961.1\|744871_745057_+\|hypothetical-protein	unknown	unknown	unknown
NC_023064.1\|WP_024073122.1\|734506_736576_+\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|225529
NC_023064.1\|WP_024073116.1\|729625_730198_-\|HupE/UreJ-family-protein	unknown	unknown	gnl\|CDD\|368209
NC_023064.1\|WP_024073113.1\|726383_727151_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187604
NC_023064.1\|WP_024073125.1\|738425_739313_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170

Protein	Function_ID	Function_description	E-value
NC_023064.1\|WP_024073119.1\|732382_732904_+\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	1.42073e-36
NC_023064.1\|WP_024073129.1\|742055_743324_-\|Hsp70-family-protein	gnl\|CDD\|212673	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins. This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.	0
NC_023064.1\|WP_024073120.1\|732909_733542_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|236881	PRK11202, PRK11202, HTH-type transcriptional repressor FabR.	2.21713e-38
NC_023064.1\|WP_024073127.1\|740270_740570_+\|phosphate-starvation-inducible-protein-PsiF	gnl\|CDD\|183165	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF.	4.5855e-18
NC_023064.1\|WP_012721947.1\|730219_730834_-\|urease-accessory-protein-UreG	gnl\|CDD\|349776	cd05540, UreG, urease accessory protein UreG. UreG is one of the four accessory proteins of urease. Urease is an enzyme which catalyzes the decomposition of urea to form ammonia and carbon dioxide. Bacterial urease is a trimer of three subunits which are encoded by genes ureA, ureB, and ureC. Up to four accessory proteins (ureD, ureE, ureF, and ureG) are required for urease catalytical function. UreG may play an important role in nickel incorporation of the urease metallocenter. UreG is a member of the Fer4_NifH superfamily which contains an ATP-binding domain. Proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.	4.75956e-128
NC_023064.1\|WP_024073115.1\|728332_729454_-\|AGE-family-epimerase/isomerase	gnl\|CDD\|225493	COG2942, COG2942, N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism].	4.11846e-52
NC_023064.1\|WP_024073118.1\|731544_732045_-\|urease-accessory-protein-UreE	gnl\|CDD\|237322	PRK13261, ureE, urease accessory protein UreE; Provisional.	3.56676e-58
NC_023064.1\|WP_024073124.1\|737510_738401_+\|triacylglycerol-lipase	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	2.67352e-41
NC_023064.1\|WP_041160827.1\|727368_728274_+\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|226474	COG3965, COG3965, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	4.80453e-82
NC_023064.1\|WP_024073126.1\|739410_740199_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|380379	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain. This family contains mostly bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included in this family is Escherichia coli HTH-type transcriptional regulator NimR (also called YeaM) that negatively regulates expression of the nimT operon and its own expression. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	8.17473e-32
NC_023064.1\|WP_024073128.1\|740746_741760_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	4.94908e-11
NC_023064.1\|WP_024073117.1\|730873_731548_-\|urease-accessory-protein-UreF	gnl\|CDD\|223900	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones].	3.74529e-59
NC_023064.1\|WP_024073123.1\|736803_737334_-\|bacterioferritin	gnl\|CDD\|225104	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism].	3.91872e-39
NC_023064.1\|WP_024073130.1\|743609_744554_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	4.51127e-139
NC_023064.1\|WP_024073112.1\|724847_725564_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	9.37454e-134
NC_023064.1\|WP_024073122.1\|734506_736576_+\|AsmA-family-protein	gnl\|CDD\|225529	COG2982, AsmA, Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane].	1.44062e-168
NC_023064.1\|WP_024073116.1\|729625_730198_-\|HupE/UreJ-family-protein	gnl\|CDD\|368209	pfam04955, HupE_UreJ, HupE / UreJ protein. This family of proteins are hydrogenase / urease accessory proteins. The alignment contains many conserved histidines that are likely to be involved in nickel binding. The members usually have five membrane-spanning regions.	7.11451e-43
NC_023064.1\|WP_024073113.1\|726383_727151_+\|SDR-family-oxidoreductase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.55469e-142
NC_023064.1\|WP_024073125.1\|738425_739313_-\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	6.58123e-11

>NC_023064.1|WP_024073120.1|732909_733542_-|TetR-family-transcriptional-regulator
MLPRAEQKQQTRLALMDAARHLMECGRGFGSLSLREVAKTAGIVPTGFYRHFADMDQLGLVLVSEVGQTFRATIRLVRHNEFVMGGIIDASVRIFLDVVSANRSQFLFLAREQYGGCLAVRQAIGALREDITRDLAADLTHMPKLQHLDADGLHVMADLIVKSVFATLPDIIDPPAQALPAHLTPQAKITQQLRFIFIGLKHWQGLGSTE
>NC_023064.1|WP_024073119.1|732382_732904_+|C40-family-peptidase
MFKSIVCVFIFGLFLVTTSSSANIQKRAVAPLKVDTALPALSRKPSIDDVIDRAHELLGTPYKWGGNSVEQGFDCSSFLVYLFKTQANIHLPRTTAAMHGSKAATIKRNALKPGDAVFFKGNGRGRVSHVGLYIGEGKFIHSPRAGKTVRIDSLSNRYWDRNFTTAKRFHAAG
>NC_023064.1|WP_024073118.1|731544_732045_-|urease-accessory-protein-UreE
MLVIHRRIAPQALWAAELLLNFEARSKSRLRCFSADGEDVGLFLERGQPPLHDGEFLQAEDGRVVRVCARPEQLLHVTCSSAFELTRAAYHLGNRHVALQVGDGWLRLLDDYVLKAMLDQLGATTQTIEAPFQPEHGAYGGGHHHSRHGDEDFNYPPKLHQFGVRL
>NC_023064.1|WP_024073117.1|730873_731548_-|urease-accessory-protein-UreF
MNPAWALLRLASPQLPIGGYSYSQGLEMAVENGRVSEADSARRWISDQLLLNLARFEAPLLLAHCRAAADEDWPQLAQLCAEHRASRETRELYQESRQMGYSLQQLLNGLPELDADAREVLDQHTEPHLALGWALAARAWRISPDDALAAWLWSWLENQLAVLMKTLPLGQQAAQRLTSELLPLLQQAQQDAGRIDPNHFGSAAFGLSLACMAHERQYSRLFRS
>NC_023064.1|WP_012721947.1|730219_730834_-|urease-accessory-protein-UreG
MNTQPLRVGIGGPVGSGKTALTLALCLALRDRYNLAVVTNDIYTREDADFLVRNQALAPERIIGVETGGCPHTAIREDASINLEAVDQLNRRFPGLDLILVESGGDNLSATFSPELSDLTIYVIDVSAGDKLPRKGGPGICKSDLLVINKIDLAPLVGASLELMNSDTQRMRNGKPFVFSNQKTGVGLEEIVAFIERQGLLTAA
>NC_023064.1|WP_024073116.1|729625_730198_-|HupE/UreJ-family-protein
MSLKKLFGAAALLLTPALAFAHPGHGDNGLVAGISHPLGGIDHLLAMVAVGLWAAQQKGAARWALPCTFVGTMLIGGVLGFEGLGLPALESGIAASVLALGLAVALAVRPPLFVAVAATAVFALFHGVAHGLELPDMSSPWAYAAGFVGATAALHAAGYALVRWLPAAAAPLVRVAGAASAATGVWLLAG
>NC_023064.1|WP_024073115.1|728332_729454_-|AGE-family-epimerase/isomerase
MPTVPSSTPQSSLNAVLSHFHDVIVPLWQGPGWNAELTLPYEALDADHRPLPPQRYRAMACARQLYLFASLIGVPGAAFAEERAAALFRSLQRHFHDAEHGGWFYSIDPAGQPLDKRKDLYTHAFIIFACAHYWAKVREPLVESVLNAALEVVAERFANGDGLYEAVLERNWSSLKSGPLQNPLMHLAEGFLATLAVREDTGVQAALLSLATAMQQRFIERQHGVMMEKPLGAVDNWFEPGHQFEWFFLLESSPVLRGTPLHGSLTRAFAYAEHKGVDSATGAVSGMLALDGTVRDGTQRIWAQAEYLRALTLRPGSEAVLQRQLLALQQHFLHEKGWHECLDAKGDVSRRDMPSTTPYHLATCYQGLIQHLG
>NC_023064.1|WP_041160827.1|727368_728274_+|cation-diffusion-facilitator-family-transporter
MSNRGEQSLLKQSTILMFAVAIAGIVTGVVSGAQSILFDGFFSLIATAIKVLMLITAKLIAKKSNERFQFGYWHLEPMVLLIEGSFLLLIAIYAFLNGVFGIINGGREIELGLVIIYAAVFTVVEFAYFFYVRYRNRRLKSSLIQFDNISWLVDAMLSVGLLVSFLAALLLKSQGYGEWAVYVDPLILILLALSMLAPAFKILRPALREVLGIAPDHLDDKVREVMDAAQARHGFEDYVSYVQKHGRARFIEIHVVLPADYPVDSVATLDGLREEISTGLGKPDAARWLTISFTGDRKWIA
>NC_023064.1|WP_024073113.1|726383_727151_+|SDR-family-oxidoreductase
MSNTLFITGATSGFGEACARRFAEAGWKLVLTGRRAERLNALVEELSKQTEVHGLVVDVRDRKGMEDAIANLPPSFATLRGLINNAGLAVGTDPAPKCNLDDWETMVDTNIKGLLTTTSLLLPRLIAHGRGAGIINLGSIAGSYPYPGSHVYGGSKAFVKQFSLNLRCDLQGTGVRVTNIEPGLCESEFSLVRFGGDQARYDATYAGAEPIQPQDIADTIFWVLNTPAHVNINRLELMPVSQTWAGFAIERGAKA
>NC_023064.1|WP_024073112.1|724847_725564_+|ABC-transporter-ATP-binding-protein
MSAPILEMKDLDVFYGPIQALKKVSLHINEGETVSLIGSNGAGKSTLLMSIFGQPRAESGQILYNGVDITHKSSHYIASNGIAQSPEGRRVFPDMTVEENLLMGTIPIGDKFAQEDMQRMFELFPRLKERRNQRAMTMSGGEQQMLAIARALMSRPKLLLLDEPSLGLAPIVVKQIFSTLRELASTGMTIFLVEQNANHALRLSDRAYVMVNGEIRLTGTGKELLVNEEVRNAYLGGH
>NC_023064.1|WP_024073122.1|734506_736576_+|AsmA-family-protein
MTRTRKIVAWSCASFVLLIAIVALVLVFFDWNRIKPPLNAKVSEELHRPFAINGNLAVVWQREPDEGGWRAWVPWPHVIAEDLTLGNPDWSKKPQMVTLKRVELRISLLALLAQRVVIPRIDLTEPSAELQRLADGRANWTFTFDPKDPSAEPSSWVVDIGTIGFDKGHVTLDDQTLKTQLDVIIDPLGQPIPFAEIVGDADARKALEKGAAPQDYAFGLKVKGQYHGQKLDGTGKIGGLLALQDAAKPFPLQAQVDIADTRIALAGTLTDPLNLGALDLRLKLAGSSLGNLYPLTGVTLPDSPAYSTDGHLIAKLHEANGASFRYENFNGKIGNSDIHGDLAYVASQPRPKLSGTLVSNQLLMTDLAPLIGADSNAKQKARGGMSKQPANKVLPVEEFRTERWRVMDADVEFTGKRIVHSADLPFTDLYTHLVLNDGELSMEPLRFGVAGGKLDAQIRLNGRTVPMEGRAKLTARNFKLKQLFPTFEPMKTSFGELNGDADISGRGNSVAALLGTSNGDLKMLINDGAISRGLMEIAGLNVGNYVVGRLFGDKEVKINCAAADFGIKTGLATTRLFVFDTENAIIYVDGTANMATEQLDLTITPESKGFRLFSLRSPLYVNGPFIKPNAGVKAIPLALRGAGMVALGVIAGPAAGLLALVAPSGDAPNQCAPLLQQMREGKAPKTVKG
>NC_023064.1|WP_024073123.1|736803_737334_-|bacterioferritin
MTEANLTDVATLRSRARQNVENGAVTEGYDADREEIIRLLNASLATELVCVLRYKRHYFMASGVKAQIAAEEFLEHATQEAEHADKLAERIVQLGGEPEFNPDLLSKNSHAQYVAGNTLKEMVYEDLVAERIAVDSYREIIQYIGDKDPTTRRLFEEILAQEEEHADDMADILESL
>NC_023064.1|WP_024073124.1|737510_738401_+|triacylglycerol-lipase
MPQSLATRYPLVLVPGMLGFVRLGWFPYWYGIVPALRAGGAQVFAVQVAPLDSSEVRGEQLLAHIERIRRETGADKVNLIGHSQGALTARYAAARVPEWVASVTSVAGPNHGSELADHIHTHYPAESVRGRIMSALFHWVAWVMGVLETGYRGPRFKADLHASHHSLTSVGVAAFNRAYPQGLPATWGGQGAAEVNGVRYYSWSGTLQPGKTDRGRNLLDGTNRSCRLFARSFVREKGQCDGMVGRYSSHLGVVIGDDYALDHFDIVNQSLGLVGKGAEPIRLFVEHAQRLKAAGV
>NC_023064.1|WP_024073125.1|738425_739313_-|DMT-family-transporter
MQYAYPLLAIFIWAGNTVVNKLAVGSIFPAEIGFYRWLLAAVLFTPFMLKPVLAQWPIIRRNLGKIFILGVLGMAVYQSLAYYAATLTSATNMGIILSLMPLMALTAAIISLGQRLTFGALTGALLSFAGVVVVVSAGSLGALLQHGVNLGDGMMLVATLAYAVYSTLLKKWQLRLPPLVLLYLQVLVAVLVLFPLFLFSAKAGLGWANIPLVLYACLLASMLAPLAWMHSVKTLGPSRTTLFFNLLPLITALIAALVLKEALALYHLVGGLLTLGGVILSERWTTPVGRQRAAA
>NC_023064.1|WP_024073126.1|739410_740199_+|helix-turn-helix-transcriptional-regulator
MPRHTVRLADFPRLPSPVYFRYSDFAPDTECTPHRHSWGSLDYSASGVMRMEVAGNRFMSPPQYAVWIPPNTEHSSYNAQAIVYRSVGLAPQLCEQLPKQPCTLAISEILKAILSDFALRDVNIPRSEADIRLAQVLVDQLKQAPIHDCFLPYARHPGLLGVLEGMQAEPGDNRPLAQWAEQVHVSERTLARQFVRELGMSFGEWRQRLRYLAAIEALDSQRSVQHVAFDLGYSSASAFIAMFQRQAGCTPEQYRRTNIRSR
>NC_023064.1|WP_024073127.1|740270_740570_+|phosphate-starvation-inducible-protein-PsiF
MKMLRIPLLMMGLLLCSQGFAATAQQNKMTTCNAEATTKTLKGDERKAFMKTCLSAPAANDAKTLTPQQQKMKDCNADAKTKALTGDARKTFMSTCLKK
>NC_023064.1|WP_024073128.1|740746_741760_+|AI-2E-family-transporter
MPTFSQRHVLLLASYIIIFGGLLLVLPLKLLPSLLAGLLVFELVNMLTPQLQRLIEGRRARWLAVALLGTLIVSVLALIFAGAISFLLHEAENPGASLDKFMGVVDRARGQLPPFLDAYLPASAAEFRVAIGDWLSKHLSELQLVGKDAAHMFVTLLIGMVLGAIIALQRVPDVTKRKPLAAVLFDRLHLLVQAFRNIVFAQIKIAALNTVFTAVFLAVVLPLCGIHLPLTKTLIVLTFLLGLLPVIGNLMSNTLITIVALSLSIWVAVAALGYLIVIHKVEYFLNARIVGGQISAKSWELLLAMLVFEAAFGLPGVVAGPIYYAYLKSELKLGGMV
>NC_023064.1|WP_024073129.1|742055_743324_-|Hsp70-family-protein
MENPSPARACGIDFGTSNSTVGWIRPGEETLIALEDDKITLPSVVFFNFEERRPVYGRLALHEYLENYEGRLMRSLKSLLGSKLIKHDTSVLGTAMPFTDLLALFIGQLKSRAEATAGREFEEVVLGRPVFFVDDDPMADQEAENTLVDVARKIGFKDISFQYEPIAAAFDYESTIEKEELVLIVDIGGGTSDFSLVRLSPDRRHNDNRHDDILATGGVHIGGTDFDKQLSLAGMMPLFGYGSRMKSGAYMPTSHHMNLATWHTINSVYSQKSQLALGSMRYDIEDTGGIDRLFKLIEQRAGHWLAMEVEETKIQLTHEDSRHVLLDRVEPGLSVDLSRSLFESAIDGLLERVRNSVTQLLNDASVDVAQVDTVFFTGGSSGIPALRHSISAMLPNARHVEGNIFGSIGSGLAIEASKRYGC
>NC_023064.1|WP_024073130.1|743609_744554_+|curved-DNA-binding-protein
MDFKDYYKILGVEPTADDKAIKAAYRKLARKYHPDVSKEKDAEAKFKDASEAYEALKSADKRAEYDELRKYGQHGQPFQGPPGWQSRGGFGGGQGTEDFSDFFSSIFGGRGDAFGGGQRRSAGRKGQDVEMQLSVFLEETLSTESKQISFQVPQYDASGRHVSNTTKSLNVKIPAGVADGERIRLKGQGAPGVGGGANGDLYLIIKFAPHPKFEVEGENLVITVPVAPWELALGTEVAVPTLTGKINLKVPAGSQNGQRMRAKGHGLLNKSGQRGYLFIQLKVVMPKDADDEVKALWQALADKAAFEPRKTWSH
>NC_023064.1|WP_143036961.1|744871_745057_+|hypothetical-protein
MAKIQTVVAFAKPLLEAALKRPGQVMTDEQYYADILILDEERKTILRRLCDQAMGRVASVA

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Crispr_ID: NC_023064_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023064_2

3039929-3040031

Orphan

Consensus_repeat	Method
GAGCGGGCTTGCCCTGATGCCGTTCAGTTAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_023064_2

>merge|NC_023064|2|3039929-3040031|CRISPRCasFinder
GAGCGGGCTTGCCCTGATGCCGTTCAGTTAAGGAGGAACACTGTAACTGTGGCCAGCGGGCTTGCTGTGGCGAGCGGGCTTGCCCTAATGCCGTTCAGTTAAG

>NC_023064|2|2|3039929-3040031|CRISPRCasFinder
GAGCGGGCTTGCCCTGATGCCGTTCAGTTAAG	GAGGAACACTGTAACTGTGGCCAGCGGGCTTGCTGTGGC
GAGCGGGCTTGCCCTAATGCCGTTCAGTTAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_023064.1\|WP_024075055.1\|3030940_3032353_+\|DNA-polymerase-Y-family-protein	unknown	unknown	gnl\|CDD\|176458
NC_023064.1\|WP_024075067.1\|3050051_3051077_+\|protease-SohB	unknown	unknown	gnl\|CDD\|236978
NC_023064.1\|WP_024075069.1\|3052849_3053746_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182183
NC_023064.1\|WP_024075054.1\|3030318_3030933_+\|translesion-DNA-synthesis-associated-protein-ImuA	unknown	unknown	gnl\|CDD\|380271
NC_023064.1\|WP_024075058.1\|3037365_3039885_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|223256
NC_023064.1\|WP_024075053.1\|3029701_3030319_+\|repressor-LexA	unknown	unknown	gnl\|CDD\|171489
NC_023064.1\|WP_024075065.1\|3048774_3049089_-\|SCP2-sterol-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|376720
NC_023064.1\|WP_024075068.1\|3051190_3052699_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NC_023064.1\|WP_024075050.1\|3027247_3028174_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223999
NC_023064.1\|WP_024075063.1\|3044531_3045941_+\|outer-membrane-porin,-OprD-family	unknown	unknown	gnl\|CDD\|335381
NC_023064.1\|WP_024075064.1\|3046009_3048646_+\|glucosidase	unknown	unknown	gnl\|CDD\|367389
NC_023064.1\|WP_024075059.1\|3040236_3042300_-\|transketolase	unknown	unknown	gnl\|CDD\|223100
NC_023064.1\|WP_024075048.1\|3024987_3025773_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NC_023064.1\|WP_024075066.1\|3049145_3049856_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NC_023064.1\|WP_024075052.1\|3028612_3029200_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|184971
NC_023064.1\|WP_024075061.1\|3042865_3044242_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319958
NC_023064.1\|WP_024075049.1\|3025894_3027070_+\|alpha-hydroxy-acid-oxidizing-protein	unknown	unknown	gnl\|CDD\|376451
NC_023064.1\|WP_024075057.1\|3035594_3037310_+\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NC_023064.1\|WP_024075056.1\|3032396_3035468_+\|error-prone-DNA-polymerase	unknown	unknown	gnl\|CDD\|235553
NC_023064.1\|WP_024075060.1\|3042473_3042698_+\|DUF465-domain-containing-protein	unknown	unknown	gnl\|CDD\|225397

Protein	Function_ID	Function_description	E-value
NC_023064.1\|WP_024075055.1\|3030940_3032353_+\|DNA-polymerase-Y-family-protein	gnl\|CDD\|176458	cd03468, PolY_like, DNA Polymerase Y-family. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in order to access the lesion. Because of their high error rates, TLS polymerases are potential targets for cancer treatment and prevention.	5.92481e-66
NC_023064.1\|WP_024075067.1\|3050051_3051077_+\|protease-SohB	gnl\|CDD\|236978	PRK11778, PRK11778, putative inner membrane peptidase; Provisional.	0
NC_023064.1\|WP_024075069.1\|3052849_3053746_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182183	PRK09986, PRK09986, LysR family transcriptional regulator.	4.58767e-44
NC_023064.1\|WP_024075054.1\|3030318_3030933_+\|translesion-DNA-synthesis-associated-protein-ImuA	gnl\|CDD\|380271	NF033429, ImuA_translesion, translesion DNA synthesis-associated protein ImuA. A three-gene cassette encoding ImuA, ImuB, and ImuC (""inducible mutagenesis"") is induced by DNA damage, is capable of DNA synthesis across DNA damage lesions, and consequently is associated with mutagenesis. This family, ImuA (previously misnamed SulA in Pseudomonas putida) shows some homology to SulA itself and to RecA. ImuB resembles Y-family polymerases but may be catalytically inactive. ImuC is a C-family polymerase, and catalytically active.	8.13724e-80
NC_023064.1\|WP_024075058.1\|3037365_3039885_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|223256	COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair].	0
NC_023064.1\|WP_024075053.1\|3029701_3030319_+\|repressor-LexA	gnl\|CDD\|171489	PRK12423, PRK12423, LexA repressor; Provisional.	6.07468e-132
NC_023064.1\|WP_024075065.1\|3048774_3049089_-\|SCP2-sterol-binding-domain-containing-protein	gnl\|CDD\|376720	pfam02036, SCP2, SCP-2 sterol transfer family. This domain is involved in binding sterols. It is found in the SCP2 protein, as well as the C-terminus of the enzyme estradiol 17 beta-dehydrogenase EC:1.1.1.62. The UNC-24 protein contains an SPFH domain pfam01145.	5.36643e-16
NC_023064.1\|WP_024075068.1\|3051190_3052699_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	8.22529e-58
NC_023064.1\|WP_024075050.1\|3027247_3028174_-\|alpha/beta-hydrolase	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	7.68017e-21
NC_023064.1\|WP_024075063.1\|3044531_3045941_+\|outer-membrane-porin,-OprD-family	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	5.43283e-117
NC_023064.1\|WP_024075064.1\|3046009_3048646_+\|glucosidase	gnl\|CDD\|367389	pfam03200, Glyco_hydro_63, Glycosyl hydrolase family 63 C-terminal domain. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63. They catalyze the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase EC:3.2.1.106 is the first enzyme in the N-linked oligosaccharide processing pathway. This family represents the C-terminal catalytic domain.	6.16219e-07
NC_023064.1\|WP_024075059.1\|3040236_3042300_-\|transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
NC_023064.1\|WP_024075048.1\|3024987_3025773_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	3.65118e-72
NC_023064.1\|WP_024075066.1\|3049145_3049856_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	1.53307e-25
NC_023064.1\|WP_024075052.1\|3028612_3029200_+\|NUDIX-domain-containing-protein	gnl\|CDD\|184971	PRK15009, PRK15009, GDP-mannose pyrophosphatase NudK; Provisional.	3.59412e-73
NC_023064.1\|WP_024075061.1\|3042865_3044242_-\|VOC-family-protein	gnl\|CDD\|319958	cd16348, VOC_YdcJ_like, uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	0
NC_023064.1\|WP_024075049.1\|3025894_3027070_+\|alpha-hydroxy-acid-oxidizing-protein	gnl\|CDD\|376451	pfam01070, FMN_dh, FMN-dependent dehydrogenase.	1.59761e-174
NC_023064.1\|WP_024075057.1\|3035594_3037310_+\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	3.23563e-126
NC_023064.1\|WP_024075056.1\|3032396_3035468_+\|error-prone-DNA-polymerase	gnl\|CDD\|235553	PRK05672, dnaE2, error-prone DNA polymerase; Validated.	0
NC_023064.1\|WP_024075060.1\|3042473_3042698_+\|DUF465-domain-containing-protein	gnl\|CDD\|225397	COG2841, COG2841, Uncharacterized protein conserved in bacteria [Function unknown].	0.000137138

>NC_023064.1|WP_024075058.1|3037365_3039885_+|excinuclease-ABC-subunit-UvrA
MTSQRTLPPLTAQRPGFVRVRGAREHNLRNVDVDIPRDALVVFTGVSGSGKSSLAFSTVYAEAQRRYFESVAPYARRLIDQVGVPDVDSIEGLPPAVALQQQRGTPSARSSVGSVTTLSSLIRMLYSRAGHYPPGQAMLYAEDFSPNLPQGACPQCHGLGRVYEVTEALMVPDPSLTIRQRAVASWPLAWQGQNLRDILVTLGYDVDIPWRDLPKKQRDWILFTEETPTVPVYAGFTPEQTRDALKRKLEPSYQGTFSGARRYILHTFTHTQSALMKKRVAQFMQGSACPLCAGKRLTQAALSVKFAGVDIGELSQLSLVQLAELLRPVAAGQDTMKLSVEKRLAAQRIAQDLLERVSTLIELGLGYLSLERSTPTLSSGELQRLRLATQLGSQLFGVIYVLDEPSAGLHPADGEALFTALERLKAAGNSLFVVEHDLETMRRADWLIDVGPAAGEHGGQVLYSGPPAGLAAVEASQIREYLFAERRPSTASQRPPQGWLQLEGVTRNNLNDLSVAFPLGCFTAVTGVSGSGKSSLVSQALLELVGSGLGRVPDNDEERSLEDDAPQTSGGHISAGLEHLRRLVQVDQKPIGRTPRSNLATYTGLFDNVRKLFAATPAAKKRHYDAGQFSFNVAKGRCAHCEGEGFVSVELLFMPSVYAPCPTCHGARYNPETLAIQWQGLNIAQVLGLTVEQAVDVFAEQPGVLRSLHVLRDIGLGYLRLGQPATELSGGEAQRIKLATELQRNARGATLYVLDEPTTGLHPRDVDRLLSQLNQLVDAGHTVVVVEHEMRVVAQSDWVIDIGPGAGDMGGKVVASGAPQKVARSKKSRTAPFLAKELP
>NC_023064.1|WP_024075057.1|3035594_3037310_+|response-regulator
MPFLSNTHGCEGWGGEMAQRIRAFDWSHTDLGPLDRWSTSLACTVQMMLASPVPMVMLWGPAGYMIYNDSYSVFAGGRHPYLLGTPVELGWPEVADFNRHVVDTCLAGGTLSYHNKELVLLRNGQPENVWLDLYYSPVAGDDQQPAGVLAIVVETTAHVISERLRQELTHNLEQRVAAEVQARSVAEEQLRQSQKLEAIGGLTGGVAHDFNNLLQVIAGNLHLLARHEPENPQVQRRVNAAIAAVERGAKLSSQLLAFARRQPLSPAVYNPQRIYAGLGELLQRALGETIHVDVQLPQDSWCIHVDRNQLENALLNLAINARDAMKGEGVIRITGENIILNPKDCVGKSLQPGEYVRLAVTDIGVGMPASILSRVFEPFFTTKRDGHGTGLGLSMVFGFVRQSGGHVEVWSEEGKGTVVQMYFPRSLGEECQEIEPEPVCHAAGQETILVVEDNEGVRVTVVELLEQAGYTVLTAEDGDRAMQRLLDGMRPDLIFTDVVMPGRVKSTDLADWARAQQPPVAVLFTSGHTRDILSTNHLLSADIHLLSKPYSPEALTQRLRSVLTARVAQTD
>NC_023064.1|WP_024075056.1|3032396_3035468_+|error-prone-DNA-polymerase
MSYAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLAGIVRAWQAAKAVELPLIIGSEMRIENGPKLVLLVENLSGYQHLCRLITLARRRAEKGRYRLLQEDFEQPLPGLLALWVAADSDTQASIQWLRRTFAERLWLAVHLHCGQDDARLLEQRLHLAASLQLPAVACGDVHMHARGRRALQDTMTAIRYHVPVAEAGTRLHPNGERHLRSLEALAALYPQALLDETQAIARRCTFDLGQLRYQYPRELVPEGQSAKTWLRTLTEEGIAQRWPEGVDAKTLQQINHELQLISELGYESYFLTVHDIVRFARSRSILCQGRGSAANSAVCFALGITEINPSLMNMLFERFLSKERNEPPDIDVDFEHERREEVLQYVFQRYGRTRAALTAVVSSYHAAGAVRDVAKALGLPPDQVNALAECCGRWSDEAPLLERLRESGFDPESPALRRVLTLTRQLIGFPRHLSQHPGGFVISEHPLDTLVPVENAAMADRTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRHRDLSLATIPKEDPATYAMISKADTIGVFQIESRAQMSMLPRLKPQNFYDLVIEVAIVRPGPIQGGMVHPYLRRRNKEEPTTYPSPQLKTVLERTLGVPLFQEQVMQIAIVAADYTPGEADQLRRSMAAWKRHGGLEPHQVRLRNGMLKNGYSEAFAAQIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEPAAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQASDWECSLEPIDGQQPAIRLGLRMISGFREEDGRRIEAARQHRVFSDVADLDERAGLDARAEALLADAGALRALAGNRHQARWDVAGVHKQLGLFAGLPSPDEARVALPVPTVGEDLQADYVTVGTTLGPHPLALLRDELRKRRCRSSNELLAVEHGRNVSVAGLVTGRQRPGTASGVTFVTLEDEFGNLNVVVWRDLAERQRAALVNSRLLKVDGRWEAVGEVRHLIAGRLTDLTPLLDGIPVRSRDFH
>NC_023064.1|WP_024075055.1|3030940_3032353_+|DNA-polymerase-Y-family-protein
MRWVCIVFPQLALDGVQRLHPEADQPLALLAGTPQRRVLQTVNAAARALGLRPGQSLTAAQALAKGFACAEYDPVEIERWQQFLAAWAYQFSSQVSVFYPRALLFEIESSLGLFGPWPRFEARLRKELNELGFRHRIVAAPNPSAARVLANLYDGLAVDDDALMQALAPLPIDRTGLEPQAAMALSRMGLRTLAQVQALPRHTLARRFEASVLKHLDALGGYRPLALAFYQPPDRFDVRIELNFDVQSHQALLFPLRRLTGDLSAFLCGRDSGVQRFDLHLEHAQAPDSVIKVGLLSAEREPAMLFELARGRLEHVQVTSPVRGFRLVAQDLPVFVPQRKDLFDDRPQQTLPWEQLRERLRARLGDDAVQGLRFHADHRPECAWQAAADSRPCPSLDKVQRPGWLLNEPILLAEQGVQVLMGPERIESGWWDGADIRRDYYLIQTRAGQQGWAYRTVGQHDGLWLQGWFA
>NC_023064.1|WP_024075054.1|3030318_3030933_+|translesion-DNA-synthesis-associated-protein-ImuA
MGAVVALDSLFNGGRVWKGRPAVPPASVHPTGLAALDAVLPTGGWPESALSEILMAKDGVGELQLVLPTLARLSAAGERIVLVAPPYTPYPHAWQNAGVDLRQLSVVQAEERDALWAVEQCLRSGSCGAVLCWPRKADDRALRRLQVAAETGQTLAFAWRALSEAINASPAALRLAVEAKPAQVRVLKCRGGLAHPAPIALAGH
>NC_023064.1|WP_024075053.1|3029701_3030319_+|repressor-LexA
MYSMTNLTPRRTAILTFIRDRIAQQGQPPSLAEIAEAFGFASRSVARKHVVALTEAGFIEVNPNQARGIRLLNQPARPEWLDVPVLGRVAAGLPIGTDAEVHNRLQLDPATFAKTPDYLLRVQGDSMIEDGILDGDLVGVRRSAEALNGQIVVARLDGEVTIKRFERHGDHVRLLPRNPAYQPIVVGPDQDLAIEGVFCGLVRQG
>NC_023064.1|WP_024075052.1|3028612_3029200_+|NUDIX-domain-containing-protein
MDNSPVRITAEETLSDNWYVLKKYSFDLRRRDGSWQAQTREVYDRGNGATILLYNRTQRTVLLIRQFRMPTFVNDYHGYLIEAAAGLLDNASPEERIRLEAEEETGYRVGHVEKIYAAFMSPGSVTERIHFFIGEYQAGDRVGTGGGLEEEGEDIEVLELGFERALAMVARGEIVDGKTIMLLQHLELRMLKEGW
>NC_023064.1|WP_024075050.1|3027247_3028174_-|alpha/beta-hydrolase
MSSRFMSRLGLRWFPLLCMLLLIVGLPVGCSVLQHKERELVFRIEPGTASWYSGLPRAVQEFELKPTRFKSGQNIHGWWYPAEHKDAPAILYLHGVRWNLTGQLFRIEQLHALGFSVLAIDYRGFGQSHGDLPSETTVYEDARIAWERFQVLQPDPNKRLIYGHSLGGAVAIDLAAELGRQTPLPVRGLVVESTFTSLADVATAVANTSLPVRWLLSQKFDSIDKIADIHMPLLVVHGLDDRYVPPRFSQQLFDAAQEPKRLLLVPGASHNNSMSLAGRSYRQALDNLMRAKMPAQVVTHATGRNNES
>NC_023064.1|WP_024075049.1|3025894_3027070_+|alpha-hydroxy-acid-oxidizing-protein
MSLITTIEDLRKLAQKRVPRMFYDYADSGSWTESTYRANESDFARIKFRQRVARNIDERSIRATMIGQDMAMPVALAPTGLAGMQHADGEILTARAAAAFGLRYTLSTMSICSLEDIAEQVGQPFWFQLYVMRDRGFIEQLIERAKAAGVDALVLTLDLQILGQRHKDLVNGLSAPPKLTLPNILNMMTKPRWVMGMLGTKRHGFGNIVGHVKGVADMSSLSSWTAQQFDPRLSWDDVEWIKKCWGGKLIIKGILDVEDARLAANSGADALVVSNHGGRQLDGAPSSISQLPAIVDAVGERIEVWLDGGIRSGQDVLKAMALGAKGTMIGRPHLYGLGAMGEAGVTKALDIIARELDVSMALCGYNDIRDVNREILLPGSFPEGVGCAKKS
>NC_023064.1|WP_024075048.1|3024987_3025773_-|DeoR/GlpR-transcriptional-regulator
MHSTHQAVDLPSLRKQKILLLLERDGKVTASDLVEHFAVSHDTIRRDLGELAAAGLLQRVHGGALPRPKDSGKDFFTRVGETNEAKHHLAQLAADRVEDGQIVLFDSGSTTLRIAQALPHSIRLTVVTPSPMIAIALADHPQVKIILAGGQLNPATLSTSGQETVRLIQGIKADLLFTGVCALHPQVGISSLHFDEVAVKQALLDSASHVVAVTMADKLGAVEPFVVAPCNRIHTLITEWHVPGIEAYEQLGLEVIRVEVE
>NC_023064.1|WP_024075059.1|3040236_3042300_-|transketolase
MNQAASAVDTQCINTLRTLAMDAVQKANSGHPGTPMGLAPVGYTLWSRFLRYHPQHPDWPGRDRFVLSVGHASMLLYSLLHLAGVVEMDAEGKRTGHAAISLDDIKQFRQAGSKTPGHPEYRMTTGVETTTGPLGQGCANSVGMAMAERWLATRFNREEKTLFDYNVYTLCGDGDMMEGISGEAASMAGHLKLDKLCWIYDNNTISIEGHTELAFSEDVIKRFQAYGWHTLHVTDANDLQALTNALETFHCNRGAPTLIVVDSVIGYGSPHKHNTAAAHGEPLGEEEIRLTKAAYGWPQDASFLVPDEACTALRDALLERSEPLYEKWLEHLSLLEQYEPELADELHRMRAGQMPEHWQKHLPHFDSDAKGIASRAAGGEVLNAFAQQIPWLLGGSADLSPSTKTNLTFDGAGRFSADDYSGRNLHFGIREHAMGAIANGMALSYLRPYTSTFLVFSDYMKPPIRLAAIMELPVIFVFTHDSIGVGEDGPTHQPIEHLTQLRATPGLLTLRPGDANETLELWKVALAQTHRPSCVVLSRQPLPTLDRSKYAAASGAAKGAYVLAGAEAPDVILIATGSEVSLAVEAYEQLKAEGIAAQVVSMPSWELFEDQDQAYRDSVLPPAVKARVVVEQAGPLGWDRYVGQTGAKVVMNSFGASAPLAKLQEKFGFTTENVVKQARAQIQLTQR
>NC_023064.1|WP_024075060.1|3042473_3042698_+|DUF465-domain-containing-protein
MPVKHDLYQDLGLSKDEVDGRRAQNARLNALFDKYNNVDELVVNAEKAAGSDDEIKKLKERRLLVKDEIKDLLK
>NC_023064.1|WP_024075061.1|3042865_3044242_-|VOC-family-protein
MHTTAHVSPDEIRKGFSKAMSDMYRDEVPLYGALMTLVAEINARVLDSDPGLAQQLQRTGEIQRLDMERHGAIRLGTAAELATISRMFAVMGMQPVGYYDLTPAGVPVHSTAFRAVHESALQTSPFRVFTSLLRLELIENPDLRAFAESALAKRSIFTPAALALIEQAEQDGGLGAADADAFIREALETFRWHHTATVTAAQYQQLSDQHRLIADVVAFKGPHINHLTPRTLDIDQVQAAMPGKGITPKAVIEGPPRRRCPILLRQTSFKALDEAIAFTDAQGSHSARFGEIEQRGVALTPKGRALYDQLLNAARDELGAFPNESNAERYVQLMEQHFQAFPDDHTQMREQGLAYFRYFVTDKGLAARGQADQPRTLEALASAGHVAVEPLVYEDFLPVSAAGIFQSNLGDAAQSHYAAHSNQAEFEKALGRQTIDELKLYEETQQRSMDACTQALLA
>NC_023064.1|WP_024075063.1|3044531_3045941_+|outer-membrane-porin,-OprD-family
MKISTLALSITAAVLAQQAYADDFGLGSLGTGNGHSGFLEDSHASVSSRTMYYSADNRSGTNNDLREAATALRFDYKSGFTQGTVGVGFDVMAFGALRLDGGDGHTAGAGLSGNGNSFFPTKNNGTEPADSFGRAAGNVKFRISQTELHVGGGLAPILPILVSNDSRVAPQTFDGGILTSNDIPNVTFTGGELNRVEGRASSNSTGLSVAGGTRDSDSFKFGGVDYKPFGSSDNVIAKNLTLQYYYAQLQDFYKQNYVGLVHVLPLGNDQSFKTDLRYFDSSSDGKNGETGYQFNNNGGYARHAGEVDNKTYSAAFTYQLGGSSLMLGHIGVGDDGGFVWVNQGSLADPQAQGAGGSDFYLFTDAVVGQFSRAGEQVNFGQYSYDFKAYVPGLRASVAYLDGSDIKSKVVGGPDQKENEADFRLDYVVQEGPLKGFGTTLRTGTYHGKNTGTADQDQTRLIFNYTYAIF
>NC_023064.1|WP_024075064.1|3046009_3048646_+|glucosidase
MTATPDTRILETIEGQRLATQDAERWREWGPYLSERQWGTVREDYSADGDAWAYFPHEHARSRAYRWGEDGLAGFSDRAQRWCLGLALWNEHDAILKERLFGLNNAEGNHGEDVKELYFFVDGVPSHAYMRMLYKYPHAAFPYADLIAENARRGLGDAEYEILDTGVFEDNHYCDISVEYAKHQPDDIFMRVTVHNRCDQPTRLHVLPQVWARNDWSWTLGAPKPRLTLDGDRVLARHHELDDRHLSAWGRDGVEWVFCENETNVSKLDGQSAAGPFKDGINDYVVNAVQSAIRRDSGTKVAARFILELAGLESQTLYLRFAPTDAPEVNARKLFELRRQEADDFYAALQHGITDEDARNVQRQALAGLLWSKQLYYFDVNQWLDGDPAQPAPPPERLHIRNTHWRHLSNFDILSMPDTWEYPWYASWDQGFQAVAIALIDPGYAKQQLLLLVKDRFMHPNGQLPAYEWRFDDANPPVHAWASWRVYQQDKALSGVGDMDFLERIFHKLLLNFSWWVNRKDAEGRNLFQGGFLGLDNIALFDRSATLPPGYQLDQADGTAWVAAYALDLMRIALELAKRNGVYVDIAVKFFEHFLYIAGAINRVDDSAEGLWDEQDLFFYDVLHRPDGQNEPVRLRSIVGLMPLFAVLVLEQREHEGLEGLRERLLGFMRHRPDLAKLVSRWNEPGQGNRLLLALLRGERTKDLLRRMLDDDEFLSPFGVRSLSKAFAEQPLALKMNGNTLCARYQAGESDSRLYGGNSNWRGPLWMPVNYMLIESLREFHRYYADNFSVEYPTGSGYLSSLEDVADSLSQRLTRLFLRDENGSRPSMVGYAQLEADPASRDLVLFHEYFHGETGRGLGASHQTGWSALVALLLQPRN
>NC_023064.1|WP_024075065.1|3048774_3049089_-|SCP2-sterol-binding-domain-containing-protein
MTEVAKAVEAMKAKFNPDAANGLDLVFGFRIDDTQNFSLVVKNNTCELLEGENPEAQVTLVMDGETMKGIVDGSTDGMQAFMSGKLRTEGDMMLAMKLSELFPS
>NC_023064.1|WP_024075066.1|3049145_3049856_-|histidine-phosphatase-family-protein
MGSIYLIRHGQASFGADDYDVLSPVGVEQAQVLGRHLADMGLVFDRCIAGDLRRQQHTATAAFDQYSTLGLPVPAVETDSAFNEFDADAIIRALLPDLLGSEPDALEILRNAAQNRSEFQRIFALIIERWLAGTYDTPGLESWLGFVERVQGGLQRILEAADNTQKIAVFTSGGTITALLHLITRMPAAQAFELNWQIVNTSLNQLKFRGREVALASFNSHTHLQLLKAPQLITFR
>NC_023064.1|WP_024075067.1|3050051_3051077_+|protease-SohB
MDFLAEYASFLAKTVTLVVAILVVLISFAALRSKGRRKSAGQLHVSKLNDFYKGLRERLESTLLDKDQLKALRKSESKAEKKKGKKAPEAKPRVFVLDFDGDIKASATESLRHEITALLSLATPKDEVVLRLESGGGMVHSYGLASSQLARIRQAGVPLTVCIDKVAASGGYMMACIGEKIISAPFAILGSIGVVAQLPNVNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQEDLDITHQLFKNFVSRYRPQLAIDEVATGEVWLGVAALDKQLVDELQTSDEYLATKAKTAEVFHLHYAERKSLQERVGLAASGSVDRVLLTWWNRLTQQRFW
>NC_023064.1|WP_024075068.1|3051190_3052699_-|MFS-transporter
MKPASQRLTLLTASGVCSLIVLDTNIVAVTLPSIARDLGANFADIEWVVSAYMLAFAALLLPAGSVADRFGRKKTLVWGLGIFILASLGCGAAPNALFLDIARALKGVGAALLLTSALASIGHTFHDEGERAKAWAFWGACMGVAMTAAPTLGGLITEYLGWRWIFYLNLPVGLGLMALVLRAIPESRDTQSARLDPWGSLAFSASLLCLIWGLIEANRIGWDNPLTFARLSAGALLLGVFVWVERVQRRPMVDLQLLRHPRFIGALLGMFAYAGCAQVMMTLLPFYLQNGLGFSAIASGLGMLPFALTMLICPRIGARLAGRLAPATMMAAGLTLVGSGNLLSAWAVNVGGYLPFALAIAVTGAGAGFLNGDTQKNIMACVPRDRAGMASGMSTTMRFSAIMLAIGVYGALLNSHSEQLLRASLDAQWQGQAADIASRVVAGDMSAALGRLPEAARAAVQPLARQAFVGGFSKVLWVAGLLGLLGALVVGRLMRKPIPTPN
>NC_023064.1|WP_024075069.1|3052849_3053746_+|LysR-family-transcriptional-regulator
MEIRHFRYFLAVARQRNFTRAAEQLGIAPPTLSRQIQDMETSLGTRLFIRRQREVSLTEAGSALLGEAEATVRQFEFAQRNAQRAGRGEIGHLELGYVASAVYSGLLQRQMQAFSQTFPDVSVNVRECPMATLPSAVADGRYDIGYIRSPMTLPEGVEAVRLDSEGFVLALPQASWLLGLKAIGCEHLQNETFILPEQISGTLQVAAQGGYAPRLGPQPGGLVAVLALVSLGQGVAVVPTSVMGHVSLPGVVYRSIQGSDASSWLSLIHRRFEQAPAVARYVQQVKHSVAAAPSPPGA

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Crispr_ID: NC_023064_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023064_3

3244203-3244281

Orphan

Consensus_repeat	Method
GTGGCAAGGGGACCTTGTTGTGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_023064_3

>merge|NC_023064|3|3244203-3244281|CRISPRCasFinder
GTGGCAAGGGGACCTTGTTGTGGCAAGTGGGCCTGTTGTGGCAAGGGGACTTGTTGTGGCAAGGGGACCTGTTGTGGCA

>NC_023064|3|3|3244203-3244281|CRISPRCasFinder
GTGGCAAGGGGACCTTGTTGTGGC	AAGTGGGCCTGTTGTGGCAAGGGGACTTGTT
GTGGCAAGGGGACCTGTTGTGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_023064.1\|WP_024075215.1\|3251335_3251854_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|225713
NC_023064.1\|WP_024075207.1\|3240304_3241105_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_023064.1\|WP_024075211.1\|3244638_3245124_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NC_023064.1\|WP_024075218.1\|3254411_3255242_+\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
NC_023064.1\|WP_041161193.1\|3243725_3244160_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NC_023064.1\|WP_024075217.1\|3252546_3254181_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NC_023064.1\|WP_024075204.1\|3237021_3238332_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NC_023064.1\|WP_024075214.1\|3249501_3251226_+\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|223482
NC_023064.1\|WP_024075219.1\|3255238_3255622_+\|DUF1294-domain-containing-protein	unknown	unknown	gnl\|CDD\|377743
NC_023064.1\|WP_024075220.1\|3255610_3255967_-\|MmcQ/YjbR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|225197
NC_023064.1\|WP_024075205.1\|3238614_3239247_-\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238497
NC_023064.1\|WP_024075202.1\|3231073_3235621_-\|hypothetical-protein	unknown	unknown	unknown
NC_023064.1\|WP_024075209.1\|3242543_3243596_+\|2,5-dihydroxypyridine-5,6-dioxygenase	unknown	unknown	unknown
NC_023064.1\|WP_024075208.1\|3241101_3242235_-\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|181262
NC_023064.1\|WP_024075213.1\|3248693_3249341_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380064
NC_023064.1\|WP_024075216.1\|3251850_3252414_-\|nicotinamide-mononucleotide-transporter	unknown	unknown	gnl\|CDD\|377432
NC_023064.1\|WP_024075203.1\|3235722_3236868_-\|putative-C-S-lyase	unknown	unknown	gnl\|CDD\|275146
NC_023064.1\|WP_024075206.1\|3239541_3240294_-\|Asp/Glu-racemase	unknown	unknown	gnl\|CDD\|226004
NC_023064.1\|WP_003173733.1\|3230786_3231002_+\|TOBE-domain-containing-protein	unknown	unknown	gnl\|CDD\|226113
NC_023064.1\|WP_041160921.1\|3245126_3248648_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224446

Protein	Function_ID	Function_description	E-value
NC_023064.1\|WP_024075215.1\|3251335_3251854_-\|AAA-family-ATPase	gnl\|CDD\|225713	COG3172, NadR, Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism].	1.59355e-56
NC_023064.1\|WP_024075211.1\|3244638_3245124_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	5.04873e-70
NC_023064.1\|WP_024075218.1\|3254411_3255242_+\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	3.51014e-121
NC_023064.1\|WP_041161193.1\|3243725_3244160_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	3.44563e-15
NC_023064.1\|WP_024075217.1\|3252546_3254181_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	3.9172e-70
NC_023064.1\|WP_024075204.1\|3237021_3238332_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.42065e-98
NC_023064.1\|WP_024075214.1\|3249501_3251226_+\|gamma-glutamyltransferase	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
NC_023064.1\|WP_024075220.1\|3255610_3255967_-\|MmcQ/YjbR-family-DNA-binding-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	2.12565e-29
NC_023064.1\|WP_024075205.1\|3238614_3239247_-\|isochorismatase-family-protein	gnl\|CDD\|238497	cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.	3.73277e-91
NC_023064.1\|WP_024075219.1\|3255238_3255622_+\|DUF1294-domain-containing-protein	gnl\|CDD\|377743	pfam06961, DUF1294, Protein of unknown function (DUF1294). This family includes a number of hypothetical bacterial and archaeal proteins of unknown function.	5.49315e-26
NC_023064.1\|WP_024075207.1\|3240304_3241105_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	5.88656e-25
NC_023064.1\|WP_024075208.1\|3241101_3242235_-\|FAD-dependent-monooxygenase	gnl\|CDD\|181262	PRK08163, PRK08163, 3-hydroxybenzoate 6-monooxygenase.	7.95777e-69
NC_023064.1\|WP_024075213.1\|3248693_3249341_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|380064	pfam17938, TetR_C_29, Tetracyclin repressor-like, C-terminal domain. This domain is found in the C-terminal region of putative TetR-family regulatory proteins.	1.52837e-53
NC_023064.1\|WP_024075216.1\|3251850_3252414_-\|nicotinamide-mononucleotide-transporter	gnl\|CDD\|377432	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter. Members of this family are integral membrane proteins that are involved in transport of nicotinamide mononucleotide.	4.10497e-54
NC_023064.1\|WP_024075203.1\|3235722_3236868_-\|putative-C-S-lyase	gnl\|CDD\|275146	TIGR04350, aminotransferase_class_I_and_II, putative C-S lyase. Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A).	7.20569e-143
NC_023064.1\|WP_024075206.1\|3239541_3240294_-\|Asp/Glu-racemase	gnl\|CDD\|226004	COG3473, COG3473, Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism].	2.87538e-85
NC_023064.1\|WP_003173733.1\|3230786_3231002_+\|TOBE-domain-containing-protein	gnl\|CDD\|226113	COG3585, MopI, Molybdopterin-binding protein [Coenzyme metabolism].	1.17148e-15
NC_023064.1\|WP_041160921.1\|3245126_3248648_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	4.10971e-75

>NC_023064.1|WP_041161193.1|3243725_3244160_+|MarR-family-transcriptional-regulator
MPDSYVFSEQVGHLLRKAYQRHLAIFQQNVGDSQLTAVQFVTLCALRDHGASSLTELVKATAVDQATIRGIVERLKVKELITLEPDPQDKRKVVVNLSGAGAELVAHTTPRAAQISELTMSNLNPAERVAVLFLLRKMIDDPQD
>NC_023064.1|WP_024075209.1|3242543_3243596_+|2,5-dihydroxypyridine-5,6-dioxygenase
MPVSDCELTQMFEHVLRLSKVDATQSVAVLKSHYSDARTVRAAMDAAQRLGAKVYAVELPSFNHPRAMGNDMTAYCGDTALTGNIAAQRALEAADLIVDTMMLLHSPEQEQILKTGTRILLAVEPPEVLARMLPSEDDKVRVLAAEQMLKKARSIHVKSRAGSDFRAALGQYPSVTEYGFADEPGRWDHWPSGFLFSWPNEETAEGVLVLDIGDILLPFKTYTREKITLEIEKGFITGIHGGFEAEYLRDYMKYFNDPEVYGISHIGWGLQPRAQWTAMGLHDKNDGMCMDARAFYGNFLFSTGPNTEVGGTRKTPCHMDIPLRNCDVYLDDEAVVIAGDVVAPAASLAR
>NC_023064.1|WP_024075208.1|3241101_3242235_-|FAD-dependent-monooxygenase
MGSTQKIAIVGAGLGGAAAATLLQQAGFDVDVFEQAPEFSRLGAGIHMGPNIMKIFRRMGIEKQLDLMGSHPEHWFSRCGETGDYLSRIPLTGYGASYITVHRGDLHALQMSTLKPGTLHFNKRLETLEETDTQVRLTFADGEVTYADIVIGADGINSKIREELLGVEKPLYSGWVAHRALIRGDQLAKYDLTFEDCIKWWTEDRHMMVYYTTGKRDEYYYVTGVPHAEWDFQGAFVDSSREEMFEAFKGYHPTVQALIESTESVTKWPLRNRNPLPLWSRGRLVLLGDACHPMKPHMAQGAGMAIEDAAMLTRCLQETGISDYRTAFQLYEANRKERASRVQAVSNANTWLRTQEDPAWVYGYDLYAQELKSGVAA
>NC_023064.1|WP_024075207.1|3240304_3241105_-|alpha/beta-hydrolase
MSTLLYGGNVQANGIRQHYLRYGGKGPALILIPGITSPAITWGFVAERLGEHFDTYVLDVRGRGLSSTGPGLDYSADTCAEDIGAFADALHLDSYHLVGHSMGARFAVRSAVKHPRGVNRVVLIDPPVSGPGRREYPSKLPWYVDSIRQSLIGMDAEAMRAFCATWTDAQLQLRAEWLHTCFEPAIVRAFNDFHTVDFHQDLPHLKAPALLMVAGRGGVILDDDIAEIQALQPSIQVARVPNAGHMIPWDDLEGFFHALGDFLLQQ
>NC_023064.1|WP_024075206.1|3239541_3240294_-|Asp/Glu-racemase
MQKLYRIGQIVPSSNTTMETEIPAMLTARQAIRPERFTFHSSRMRMKQVRKEELAAMDGESDRCAVELSDAKVDVLGYACLVAIMAMGLGYHRNSEQRLRKATADNDANAPVITSAGALIEGLKVMGAKRIAIVAPYMKPLTELVVNYIREEGFEVVDWRALEIPDNLDVARHDPANLPAIVAGMNLQGVDVIVLSACVQMQSLPVVAKVEAQTGKPVLTAAIATTYAMLKALDLEPIVPGAGALLSGAY
>NC_023064.1|WP_024075205.1|3238614_3239247_-|isochorismatase-family-protein
MSEQSANANYQGVWGNRIGFGKKAALLMIDFMQGYTTEGAPLFAPGVVTAVAESVELLATARKHGIAVVHTNIRYHPGHFVDGGIWVKKAPVMKDMVEGNPLAAFCAEVVPQADEVVITKQYASAFFGSSLAPMLHAQGIDTVVLAGCSTSGCIRATAVDAVQHGFRTIVVRECVGDRHPAPHEANLFDIDSKYGDVVSKQEAMSKFREQ
>NC_023064.1|WP_024075204.1|3237021_3238332_-|MFS-transporter
MPIANAAPATTVADPVNTLYHKITWKLIPFLCFCYLAAYLDRINIGFAKLQMLDQLQFSETAFGLGAGLFFVGYIIFEVPSNLVLERVGAKIWIARIMITWGLLSACTMLVTSTTQFYILRFLLGAAEAGFLPGVLYYLTTWFPTHRRGRIIALFMIGLPLSSVIGGPLSGWIMGHFDHMAGLRGWQWLFLIEAVPSVLLGVLTFWALPNSYQQAKWLSIEEKTLLERELRKDDADGAGSKHSFRDGFFNLKVWMLGGIDFSILLSAYAMGFWMPTFIRNAGVTDTFHIGILTALPSVAALLGMLLIGASSDKHRERRWHIIVPFFIGAAAMATSTFFTHNVAATVVLFAIASAAIIGAVPVFFSLPATFLKGTAAATGFALACSVANIAGLVSNSLMGVAIDVTGSSAGALWFFAGCLILSSFLVIALPAKLVNR
>NC_023064.1|WP_024075203.1|3235722_3236868_-|putative-C-S-lyase
MSFDFDTIHPRLGTGSTKWNRYPPDVLPMWIADMDIAAPPAVLQALRERLDQQILGYSVAGPDVREAIVDDLWAKYAWRVQPEELLFLPGVEPGFNMALHAFVQPGQPVVLQTPNYRPIRLAPGHWNLPRIEVPFDCIDGEYLTPLPALRQALSGAGALLLSNPHNPVGKVFPRAELLAVATACLEQGALIISDEIHAELCFDGRRHIPTASLSPEIAQRTITLMSASKAYNVAGLKTCFAVVQNAEIRERFNHARCGMVDSVSPLGLEATRAAYSQCSDWLAALVHYLQGNRDYLLEAVRTRLPGVVMHAPQGTFLAWLDCSALGLDDPQQFFLEQAKVGLSAGIEFGDDSQQFVRLNFGCPRAMLEEGIQRLERSLQNR
>NC_023064.1|WP_024075202.1|3231073_3235621_-|hypothetical-protein
MTQSIQNTALPPVLVLNSYTGEAPRNQPAYTISPPSSRETLRHQGDSQLVQSLGPTPFDHPLSGPDSLFNVPPHSTLGLWLKQLDDALRTPDFKQWMKANNISTSNVQFHPGPNTLEVTVDGQAKTFSLDDHSGFAAVAGPLIQAVQALGFWPPSSGRLLDYPSKPYDVASAQDVLRFYGISQADSNALNTTARKQTFAPITDTDPLRGAAALAAQQRVVGDSHDRHHLIAGLTRLLAGLPAPPETLLALARGLNSSQISVHPGSSYSQEHHNGMAARASLAQVLQASGRRPPKTSGQLKRLLRDLKAAGPPNPVDLREKSRYAQRLQSMQNALPNVRNEAKKWAEEIIFTLTGRKVDADTVFLNRFYNADSAPTVTGWEHLGTEPLRSQRLPDALLSNFGEQDWTPGVLDQDAGLYTVGTGESKKRGYGVHNQFPLTPSRLMHESWKTDFQELTATRQARFWKDHGDDYRMALKGNFVAQARQQRMAYEKASPAEREKMPPEQRFTHDDYQWVMGAASNLPLKEHRPLTVEQLKATAPVKVSTHVFDINGFQSSDILRFTGHDEAYRSVRDRRDGVQILYIPGHQPAFLRFDSLEKMDQWVAEQGKDPDKLKALASHFSLRDRQDNDNGFWTGLKTFFTGDDQSNKGVDRALKYLGSGYWDNLEGTVIDQANVRIQGDVFSAMTDAARKRMTSDTDIAIKSNSEVTRDTWLNDVTAAAGLVTKLAVIGEPVVVGIAAATGLAETALGAEKAYSGDTQAERRQGASAALDGVLNTLFAVAGGTDPVASDPFELPRERPAVLPLRNEVFSDGQRAQVIDHALTPNAYTLPRTNGYDLIDGDRIYRYRDSRPGELTDLQAQEPAQPLDDFEAICPAPAAGRRVRRGANDECFAKILNDLPEPKAQLQALEHVRLFPSKPSLFSKDRWVIHEKRLHKMLETDIGSQLVPVNDAKRITYKRQVRGKLVADPGFGFYPGNTLGPLAEQTRVVKLNKISEAVDDQRQLRAVVVTSGTQPYLVVEADTAEFYYAPLDKKQTGDITFKKCSPTELDLVQGYRQFLGLNHSTQALDADFIALPKLKGVYPQLEAAGYAKADVDELKQLCKALTDEQQREVVYQLQRAKAITPPDVALRPQQVSALEKPADFARWPAARQNRFYAENAKAQVQQALKATGLGPGNQLRSANDLARADAADMTLNWLRRTADLRAPNGPDLIMKTGAGNCGEMALLSRDIIGKSGGKAAEWRAGDAHAFTVIGGPPGPVSATTDFAGPAWADAWVVDPWADIACPASEYTQQLQATMAKWDAAGLKIRQGGQANMSPLDPDWIDTLVKQPKRPYELSRPRNAKVPAVRPPSLQPAAPVHVAMGESTTLSNNHAPLSTRSLSDCSALAVLSDWNGSTYQTRTLMHLTGSNLELGLRDGNAQQLLDNLLASLNKGGRVILVGGVNTQSTQGLATVIGQTLNGQQPLNALLKERPGVTVTIASSAGITVNADGTFELIEGTGKGVLPPEELRAIFDRID
>NC_023064.1|WP_003173733.1|3230786_3231002_+|TOBE-domain-containing-protein
MTIKAINVRNQFKGVIKEILLGEVVSEIDVQTASGIVTSVITTRSVRDLELKVGSEVIAFVKSTEVSIAKL
>NC_023064.1|WP_024075211.1|3244638_3245124_+|(2Fe-2S)-binding-protein
MISPHITVALEVNGQPSEVSAMADTSLLLVLRNDLQLNGPKYGCGLGECGACTVIIDGVAARSCVFPLSGAAGRKIVTLEGLGTRQAPHPVQQAFIDEQAAQCGYCLNGMIMTTKALLDRNPNPSEAEVRNELSGNLCRCGTHLEILRAVLRAARLMTVDR
>NC_023064.1|WP_041160921.1|3245126_3248648_+|molybdopterin-dependent-oxidoreductase
MTDTPLSRDQWLAKAGVLLIVDDVLPPSGPVAKGGTPTVKPKELGLFIAVNDDGLVYAFNGHVDLGTGIRTALAQIVAEELDLDLDQVRMVLGDTERVPNQGATIASATLQISAVPLRNAAAEARRFLLARAAGRWGVSTASLKVEAGVIHASDGRTLTYGELVCGQRDQLRVSGDAPLKALEDYRLVGKGAERVDIPGKATGELTYVHDMRVPGMLHGRVVRPPYAGLDCGDFVGNSLLSVDESSIAHIPGIVAVVVIRDFVGVVALREEQAIKAAEALQVHWKPWNNGLPDMSDVEQAIRDNPRLRRTVLDQGNVDEALANASQRMPRSYLWPYQMHGSIGPSCGVADYTPAGSRVWSGSQNPHLLRADLAWLLACDEALIEVIRMEAAGCYGRNCADDVCADALLLSRAVGKPVRVQLSREQEHLWEPKGTAQLMEVDGGLNADGSIAAYDFETSYPSNGAPTLALLLTGRVEPVAAMFEMGDRTSIPPYDIESMRVTINDMAPIVRASWMRGVSALPNTFAHESYIDELAFAAGVDPVEYRLRYLKDERAIDLVKSTAERANWSPRTAPMQTASEDHLLRGRGFAYARYIHSKFPGFGAAWAAWVADVAIDKQTGDVSVTRVVIGHDAGMMINPAGVQHQIHGNVIQSTSRVLKERVTFEESTVASKEWGGYPILTFPEVPQIDVMMMPRQDQPPMGAGESASVPSAAAIANAIYDATGIRFRELPITPERVLAALNAGTLGEPAKSPEKRRKWWFGALFATLGAVLATAWPFHSEIAPIEPPSAGTWSKATLERGRLLAAAGDCAVCHTAPGGAANAGGLAMQTPFGTLYSSNITPDVETGIGAWSYPAFERAMRDGIGRDGRNLYPAFPYTAFRNINDADMQALYAYLMAQAPVSQAPTPNAMRFPFNLRPLMAGWNALNLRRGEITPQPERSEQWNRGNYLVNGLGHCAACHSPRNLMGAEKGGKAFLAGGIVDGWEAPALTGLSKAPTPWTEDQLFTYLSTGYADAHGVAAGPMGPVVSELSKLPKADIRAMAVYLASLKGEAVADVQVATRVPNPNGRRVFEGACKACHADGLGPKLFGVSPSLATNTNVHSDRPDNLIKVILQGINNPATQDLGYMPGFKDSLSNTQVADLVAYLRGRFAPNAPGWEGLEQKVAHLRANPGTH
>NC_023064.1|WP_024075213.1|3248693_3249341_-|TetR/AcrR-family-transcriptional-regulator
MVIKKTGIRAQQADQTRARILQAAVKVFTRDGYSGGRVDTISKEADSNDRMIYYYFGSKEHLFVCVLEHTYEQFNQAEGKLKLNLDTPVQALRDLVGFIWNYYVKHPEFVAILSIENLHQGKHARQSGEMRRLSGEAVGVLRPIIEAGQAQGVFREDVDLKHVYLMIASLCYFYNSNRHTLSSFLGEDLSNKGPQQDWLGFISDLVVRGVTPPPL
>NC_023064.1|WP_024075214.1|3249501_3251226_+|gamma-glutamyltransferase
MKYQPFSRTLIATALVLTVSGVHAASQAPVAGENGMVVTAQHLATHVGVDVLKAGGNAVDAAVAVGYALAVVYPAAGNLGGGGFMTVQLADGRKTFLDFREKAPLAATADMYLDKDGNVVDGLSAKGHLAVGVPGTVSGMELALSKYGTLKRAQVIAPAIKLAENGFELEQGDIDLLHTATGEFEKDKDLRAIFLHNGQPMQVGQKLVQKDLAKTLKEISAKGSDGFYKGWVAKALVDSSQAGKGIITQADLDKYKTRELAPIECDYRGYHVVSAPPPSSGGVVICQIMNILEGYPMADLGYHSAQGLHYQIEAMRHAYVDRNSYLGDPDFVKNPIEHLLDKNYATKLRDAIEPNKAGDSQAIKPGVSPHEGNNTTHYSIVDKWGNAVSVTYTLNDWFGAGVMASKTGVILNDEMDDFTVKVGVPNMYGLVQGEANAIAPGKAPLSSMSPTIVTKDGKAVMVVGTPGGSRIITATLLTILNVIDYKMNIQEAVDAPRFHQQWMPDTTNLETFAVSPDTQKILESWGHKFAGPQDANHLAAILVGAPSLEGKPVGNNRFYGANDPRRNTGLSLGY
>NC_023064.1|WP_024075215.1|3251335_3251854_-|AAA-family-ATPase
MKVVVLAGPESSGKSWLASELQAHFGGLMVGEYVRYFIDQHQRDTRLADIPAIARGQLAWEDAARAEQPHLLILDTHLLTNKLWSQTLFGDYPAWLDDELLARHYDLHLLLSPEDVEWTADGQRCQPQLADRQAFFNDGLEWMQQHRQAVVVIRGDWEARRAKAFAAVKQIL
>NC_023064.1|WP_024075216.1|3251850_3252414_-|nicotinamide-mononucleotide-transporter
MSGLELFAAALGVIAVWLTVKQNPWCWPIGLVMVLLYTWVFYDVKLYSDMLLQVVYAALQVYGWWQWTRAGEVRQGRQVTRLGWPAIMTSLAIGAVGSLLLGAAMAHWTDAAQPWLDAALTGFSLVAQMWMAQKRVQCWPLWVALDVIFVGLFLYKGLYLTAALYALFTVIAVQGWREWRADPALHA
>NC_023064.1|WP_024075217.1|3252546_3254181_-|methyl-accepting-chemotaxis-protein
MNSLRNMSISRRLWLILIVAVLMLLTLGLLMLKQIHGDLYQAKRQQTQNVVQTASGILTFYHSLETTGVMTREAAQKQALSAVRGLRYGHDDYFWINDLTPVMIMHPANPKLDGQNLSAIRDPDGFAVFNEFVSLAKTKGAGIISYRWPKPGSDAPVEKTSYIQLFEPWGWIIGSGVYVDDVQAEFNVQVWKASGIGLAIAVVMALLVSLIVRSIVRPLQEAVNAMGNIASGESDLTRSLDTHGRDEVTQLSQHFNSFTAKLRQVVSQLQVCANALGQSSTELGNNASQAHDRSQQQSQQMELVATAINEVTYGVQDVAKNAEHAASEMRDAQAQAQQGQVNIDSSLQQIDQLSTTISQAVEVIRTLSSESTQIGGVLEVIRSIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRLLAQRTQKSTAEIQAMIERLQGHSEAAVKVISDSHSASQLTIEQAGQAGASLTAIGQALQNLNGLNASIASATLQQAHVVEDINQNVTQAAGLSHSTALAAEQSSVASAHLRSLSEQLEGLLRQFKV
>NC_023064.1|WP_024075218.1|3254411_3255242_+|undecaprenyl-diphosphate-phosphatase
MDLWTAAQALILGVVEGLTEFLPISSTGHQIIVADLLDFGGERAMAFNIIIQLGAILAVVWEFRRKILDVVTGLPTQRNAQRFTLNLLIAFLPAVVLGVIFANLIHHYLFNPITVATALVVGGIVMLWAERRQHEVHAETVDDITWKDALKVGFAQCLAMIPGTSRSGSTIIGGLLFGLSRKAATEFSFFLAMPTMVGAAVYSGYKYRDLFQPADLPVFAIGFVTSFIFAMIAVKGLLKFIASHSYAVFAWYRIAFGLLILATWQFGWIDWAAAKA
>NC_023064.1|WP_024075219.1|3255238_3255622_+|DUF1294-domain-containing-protein
MTIQHPRLKALIFALLCAAPLLGSVLVWQRGETVIPLVAYGVVSVVAFFLYWNDKRKARTDSWRTPENILHAVELAGGWPGALIAQQVFRHKTRKVSYQVLFWAIVLLHQVFWLDQLFLGGTLGSIL
>NC_023064.1|WP_024075220.1|3255610_3255967_-|MmcQ/YjbR-family-DNA-binding-protein
MNMTEAQVAHFCLSLPGAREDYKWGGVRVFSIAGNKMFAVQHLRGDSLAFKVDKDLFLGHVDRPGIHPAPYLARAQWIIMNTPYPLGAEELRGLLQRSHQLVVSKLPKRTQIGLLLED

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Crispr_ID: NC_023064_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_023064_4

6928176-6928318

Orphan

Consensus_repeat	Method
AACAACATAGATTGACACAGC	PILER-CR

2 spacers

DEDDh

The CRISPR arrays of NC_023064_4

>merge|NC_023064|4|6928176-6928318|PILER-CR
AACAACATAGTTTGACACAGCCCCTCTCGTAAATCGGGGCCTGTAGGATGATCCGGGATCCACACGACAGCAACATAGACTGACACAGACGGGTCGCACTTCAAATACGGGGCTCGATTGGTAACAACATAGATTGACACAAC

>NC_023064|4|1|6928176-6928318|PILER-CR
AACAACATAGTTTGACACAGC	CCCTCTCGTAAATCGGGGCCTGTAGGATGATCCGGGATCCACACGAC
AGCAACATAGACTGACACAGA	CGGGTCGCACTTCAAATACGGGGCTCGATTGGT
AACAACATAGATTGACACAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_023064.1\|WP_031319187.1\|6931070_6932855_-\|ThiF-family-adenylyltransferase	unknown	unknown	gnl\|CDD\|238386
NC_023064.1\|WP_024078218.1\|6918584_6919517_+\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|226955
NC_023064.1\|WP_024078213.1\|6913833_6914457_+\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223632
NC_023064.1\|WP_019821280.1\|6934088_6935255_-\|SAVED-domain-containing-protein	unknown	unknown	gnl\|CDD\|380122
NC_023064.1\|WP_074059250.1\|6928393_6928786_-\|hypothetical-protein	unknown	unknown	unknown
NC_023064.1\|WP_024078217.1\|6917962_6918583_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NC_023064.1\|WP_024078216.1\|6917509_6917953_+\|hypothetical-protein	unknown	unknown	unknown
NC_023064.1\|WP_017341627.1\|6930591_6931074_-\|Mov34/MPN/PAD-1-family-protein	unknown	unknown	gnl\|CDD\|163701
NC_023064.1\|WP_019821283.1\|6938750_6940235_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|236625
NC_023064.1\|WP_024078214.1\|6914467_6916222_+\|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|371922
NC_023064.1\|WP_019821285.1\|6940231_6941488_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NC_023064.1\|WP_024078215.1\|6916224_6917520_+\|phosphatase-PAP2/dual-specificity-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|350376
NC_023064.1\|WP_024078221.1\|6927748_6928126_-\|hypothetical-protein	unknown	unknown	unknown
NC_023064.1\|WP_017341625.1\|6929148_6929811_-\|DUF2384-domain-containing-protein	unknown	unknown	gnl\|CDD\|131346
NC_023064.1\|WP_017341626.1\|6930014_6930563_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
NC_023064.1\|WP_019821279.1\|6932838_6934089_-\|nucleotidyltransferase	unknown	unknown	gnl\|CDD\|143390
NC_023064.1\|WP_024078220.1\|6925454_6927752_+\|penicillin-binding-protein-1C	unknown	unknown	gnl\|CDD\|273954
NC_023064.1\|WP_024078212.1\|6911419_6913345_-\|protease-modulator-HflK	unknown	unknown	gnl\|CDD\|259802
NC_023064.1\|WP_041161324.1\|6919666_6925474_+\|alpha-2-macroglobulin	unknown	unknown	gnl\|CDD\|225248
NC_023064.1\|WP_019821281.1\|6935610_6938754_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226220

Protein	Function_ID	Function_description	E-value
NC_023064.1\|WP_031319187.1\|6931070_6932855_-\|ThiF-family-adenylyltransferase	gnl\|CDD\|238386	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). .	2.01306e-19
NC_023064.1\|WP_024078218.1\|6918584_6919517_+\|phosphatidate-cytidylyltransferase	gnl\|CDD\|226955	COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only].	1.67003e-144
NC_023064.1\|WP_024078213.1\|6913833_6914457_+\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	1.29289e-21
NC_023064.1\|WP_019821280.1\|6934088_6935255_-\|SAVED-domain-containing-protein	gnl\|CDD\|380122	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain. Predicted to function as a sensor domain, sensing nucleotides or nucleotide derivatives generated by SMODS and other nucleotide synthetase domains. The sensing of ligands by SAVED is predicted to activate effectors deployed by a class of conflict systems which are reliant on the on the production and sensing of the nucleotide second messengers.	2.99852e-27
NC_023064.1\|WP_024078217.1\|6917962_6918583_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	5.1727e-33
NC_023064.1\|WP_017341627.1\|6930591_6931074_-\|Mov34/MPN/PAD-1-family-protein	gnl\|CDD\|163701	cd08070, MPN_like, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding). This family contains archaeal and bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	0.000130949
NC_023064.1\|WP_019821283.1\|6938750_6940235_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|236625	PRK09783, PRK09783, copper/silver efflux system membrane fusion protein CusB; Provisional.	6.32629e-104
NC_023064.1\|WP_024078214.1\|6914467_6916222_+\|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase	gnl\|CDD\|371922	pfam12147, Methyltransf_20, Putative methyltransferase. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The family shows homology to methyltransferases.	0
NC_023064.1\|WP_019821285.1\|6940231_6941488_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	6.36849e-21
NC_023064.1\|WP_024078215.1\|6916224_6917520_+\|phosphatase-PAP2/dual-specificity-phosphatase-family-protein	gnl\|CDD\|350376	cd14527, DSP_bac, unknown subfamily of bacterial and plant dual specificity protein phosphatases. This subfamily is composed of uncharacterized bacterial and plant dual-specificity protein phosphatases. DUSPs function as a protein-serine/threonine phosphatases (EC 3.1.3.16) and a protein-tyrosine-phosphatases (EC 3.1.3.48).	3.63074e-47
NC_023064.1\|WP_017341625.1\|6929148_6929811_-\|DUF2384-domain-containing-protein	gnl\|CDD\|131346	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family. Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. This family was proposed by Makarova, et al. (2009) to be the antitoxin component of a new class of type 2 toxin-antitoxin system, or addiction module. [Cellular processes, Other].	7.97379e-15
NC_023064.1\|WP_017341626.1\|6930014_6930563_+\|3'-5'-exonuclease	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	6.27016e-17
NC_023064.1\|WP_019821279.1\|6932838_6934089_-\|nucleotidyltransferase	gnl\|CDD\|143390	cd05400, NT_2-5OAS_ClassI-CCAase, Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme. In vertebrates, 2-5OASs are induced by interferon during the innate immune response to protect against RNA virus infections. In the presence of an RNA activator, 2-5OASs catalyze the oligomerization of ATP into 2-5A. 2-5A activates endoribonuclease L, which leads to degradation of the viral RNA. 2-5OASs are also implicated in cell growth control, differentiation, and apoptosis. This family includes human OAS1, -2, -3, and OASL. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This class I group includes the archaeal Sulfolobus shibatae and Archeoglobus fulgidus CCA-adding enzymes. It belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this family.	1.29521e-22
NC_023064.1\|WP_024078220.1\|6925454_6927752_+\|penicillin-binding-protein-1C	gnl\|CDD\|273954	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C. This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_023064.1\|WP_024078212.1\|6911419_6913345_-\|protease-modulator-HflK	gnl\|CDD\|259802	cd03404, SPFH_HflK, High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflK (High frequency of lysogenization K). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another SPFH superfamily member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	1.2071e-58
NC_023064.1\|WP_041161324.1\|6919666_6925474_+\|alpha-2-macroglobulin	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NC_023064.1\|WP_019821281.1\|6935610_6938754_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|226220	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism].	0

>NC_023064.1|WP_024078221.1|6927748_6928126_-|hypothetical-protein
MNTPSQIHERLNNRRFTVANNTHGLSGAGTVFHYLVEGDAVSGTYQGGRIRLGTQVGRVTGPDSIELLYQCLTLEGELLAGWSRGIVGVDAVGRTTLSFVWGWLSGATGGGESNYVEIAEGDGHT
>NC_023064.1|WP_024078220.1|6925454_6927752_+|penicillin-binding-protein-1C
MKLPSLKCLTPLLAAAVVLAGLRLWPHAPLEQAVTSSKVVLADDGSLLRMTLADDGQYRLWLPLERISPSLVEALLLKEDRNFYWHPGINPPALLRAAMATYSGGQRQGGSTLSMQLARRLWDLNTRQVPGKLQQMALALWLETRYSKHDILEAYLNLAPMGGNIEGAEAASRIYFGKSAAQLSLSEALALAVIPQQPGRRARFGPSLQNARLRLMNDWRSTYPQDVRNDSLLDLPLEARNRQQIPFLAPHLSEQLLASQPGNELNSTLNLPLQQLLERLISGFIAERRSTGVENATAILIDSRDQSVKALVGSADYLSTGIHGQVNGVLSRRSPGSTLKPFLYGLALDQGVIHPMSILKDLPSSFGYFQPENFDGSFVGPLTARDALIRSRNIPAVWLASQVKSPSLYGLLQEAGIKGLRNESHYGLALALGGGEMTPEELARLYVMLAGDGHLRPLRYLQEQPQTTGAALLTPQAAFMVRDMLRRNPRPDGLPGRHWRTAWKTGTSWGFHDAWSAGLVGPYVLVVWVGNFDGRPNPAFIGAKTAAPLFFRIADALPLALPNTVIKPDKPPAGLVRIDVCAASGELPNRWCPQTRKTWYIPGVSPIRVSNLHRPVLIDTRTGKAACPPFDPQYTREEVFEFWPSDVQRLYRAAGLPRRTPPNVLKNCQPNRISDQSEAPQIRSPLTQVSYQLRLSQPQESIPLNANAASDATTLYWFADQSLIGQGPPQATLNWRPGKSGEYRLRVSDDQGRSVSRGLRVEFVP
>NC_023064.1|WP_041161324.1|6919666_6925474_+|alpha-2-macroglobulin
MFDSLKAISRRVVGVFLTVVGAVFGQWHPPLWLRAIGRGLANLGNKARAYPRQAGAGVLGLVLLAAAAFYGWHWYTHLPQPHTVGYSLHKPNLTDYTQQPPVVDNLQVRFAESVAPLAAIGKPVNEGISLKPAIAGTWRWSDDRSLVFVPEKDWPVDAHYTLDLAKKSLLADGVLLSQYSSQFSTQPFRASLAQNELYQDPSNPTLKQLVATFRFSHPVDEESVRKRVSVALGKGLAYRDAQLPNRPEITFDDTKLNAFVRSAALATPLESTPVSAKLDEGIKARDGGNASTAPLVAEVTVPGRYRLTFTGAEVSFVDNERGEPEPVLMFSSSSAVADDTIANKVQAWLLPEKAQDDTRPYNSNDIDDALLARSTKVNLTHVPSVEPLNTLHAFKFKAPAGRALYVRVPANLEAIGGYLAKNPTASLISMPAYPRTLQFLSDGALLSLNGEKRLGFMARGVPGAHVEIARLLPNQLQHLVDQSSGSFARPNFGNEYFDRMVERQALDIPLSSNDPAKTVYDNVDLSHYLTANGGRRGIFVLKLSPQDEPAERTFDYSRSSTSDLRFIVVTDLGIIAKRSSDGSHDVYVQSIGNGSPVADAQVDIIGRNGLPVASGHTDNEGHAHFAKLDELRREKTPLMYVVSRGNDQSFLPIARQSQQLDLSRFDVGGLEEDGAIDRLSAYLFTDRGLYRPGETAHLGMIVRSGNWKGALQGLPVELQITDPRGLEVIRQPLKLSTSGFEAFDFPSSETAPAGDYTATLQLIGQKQTRTDLGSVSFKVRDFEPDRMKVSLSLHDTPVLGWIPPDQVVAKVTAMHLFGSPASGRRVTAKMSLSPTLAAFDRYPDYRFRLNNSLDEASTEDLAETTVDDNGQALLDLNLQRFANSTYRLQVMTQVFEAEGGRNVAAQSALLVSSAPYLVGVKSQDSLSYVAKDAPRQVHWLAVAPDLTPLAVDGLTSEVVEHRYVSVLVKQSNGTYKYESRIKNISQPASPVVMTQEGAKQTLNTATPGDFTLQLKDANGNLLNQIDYSVAGRGNTSRSLERNAELQLRLDKRSYATGDEIAISIRAPYTGAGLITIERDKVYTQQWFKADSTNSVQHIRVPAGLEGNAYVNVQFVRDMGSAEVYMSPLSYGVVPFSINLDARRMALKVEGPAKIEPGQTLDIKVTADRPGRAVVYAVDEGILQVARYQTPDPLGFFFQKRALEVGTSQILDLILPEFSRLLSGAAPGGDTEGALANHLNPFKRKHQPPVAWWSGLVDLPAGESVLHYRVPDSFNGKLHLFAVAVDADSVGVSEANTEVRGPIVITPNVPAFVAPGDVFNVSAGVFSNLDAAADVKFEVQTSDGLVVQGGKGTTLSLQPRKEGTAEFKIKVGEHLGSADLRFVAVLPDGKRIQVAETTSIRPLSEHRVALSLGRFDSASKELKPTRELFNQLRDVQVGVAASPLVWANGLKHYLDDYGYACTEQLVSKAMPALIWGGTAPEAEQAFGSAVRMLRQRQNQAGGFGLWAANPDVAPYASLYATDFLIEAKERGLPVPEDLLVRANAYLTDLANGPSEGLSELRNRAYASYLLSRQGILVSGALSDIRERYESTFKDSWQNDLGAAYLAASYKLLKQDRQADTLLRKIPWRSLVDKWDSDGLYYDPLVHDAEHLHLLARHFPELLDEVPTALLDKLGKRLNEQRYNSLSAALLLRALDNYGQRAQSDMSLKATAWLGDKQQQLLEMAGQPPRAAVPVGTQKLLMEKSEGPAAFYMLSEAGFDKGAKLKPINNGLEIIHEYLDLKGEPVSKVAVGDEFLVRLRLRATDRDQVQQVAVVDLLPGGVEPVYNLPPEPETASGEDSEGEGEESEYVEDNQEADTWQAPIGETALSNWQPDYVDVRDDRVVLYGTALRDAGTFVYRVRATNAGTFNTPPAYAEGMYETTLQGRGKVGQLEITKP
>NC_023064.1|WP_024078218.1|6918584_6919517_+|phosphatidate-cytidylyltransferase
MASQTLMLFGGIGAILVLASLIGLILKLRSRGAPNAVIDNLNARINAWWVMVVVIGIAFWLGTGAVILLFYAVSFYALREFLTLTPTRRSDYPALVAAFYLALPLQYLLIYADWYGLFSIFIPVYVFLLLPILASLGGDSTHFLERASKVQWGLMIAVFCVSFVPALLTLDIPGYEGRNLLLIAYLVIVVQLSDVLQYVCGKLFGKHKIAPNLSPSKTVEGFVGGILLSSLIGAALWWTTPFNPWQSFLIALLINLLGFAGGIVMSAIKRDRGVKDWGHMIEGHGGMLDRLDSVCFAAPIFFHLVRYWWT
>NC_023064.1|WP_024078217.1|6917962_6918583_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MFEPVVATLITSMARTVTGARSLWLGCAPVPVQRIYFANHSSHGDFVLLWASLPQNLRKFTRPVAGSDYWNKSALRRYIINRVFNGVLIDRERKDPVDNPLQPMLTALEGGDSLIIFPEGTRNLEDGLLPFKSGLYHLAKSYPQAELIPVWIANLNRVMPKGRVLPLPLLCTTSFGAPLQLEEGEDKALFLARTRDALLALAPEHS
>NC_023064.1|WP_024078216.1|6917509_6917953_+|hypothetical-protein
MPADMELQVVASLLRRGRSLDQLSTGLTLLGVLFGLAQLLLASISSICLLLSLWMIILGLLQKYWSLRVAFDADLFALLARDTERTPDLDQALQTLGLQSPKRAGRPWTERRRGALKLLRKQAWLLGAQVLLTLAVILASPWLPFAG
>NC_023064.1|WP_024078215.1|6916224_6917520_+|phosphatase-PAP2/dual-specificity-phosphatase-family-protein
MREPGLLKPAVLWLLLLAPLFFSTYGFATWVTSQRSDVGTLVFGWETHMPFWAWTIVPYWSIDLLYGFSLLLPSTRHELKQHALRLLSAQVIAVSCFLIWPLRFTFERPELDGVFGWLFAVLAGFDKPFNQAPSLHIALLVILWIMYQRHAQGVWRWVVHAWFGLIGISVLTTYQHHFIDLPTGALAGWLCVWLWPLEHPSPLLNARLSRDPKRWRLGLRYGLGALTLVILAWVLRGWWLWLLWPAVSLALVNANYCVLGAAGFQKRADGRLTPAARWLYAPYLAAAWINSRLWTRQHPQPDRIVDNVWLGRIPATNEQASFKAIVDLCAELPINPQGAYQCVPVLDLIAPTAAECLQAAHAIERLRSSGPLLVCCALGYSRSATAMAAWLLHSGRAATVDEALAIIRTARDQVVLHPAHREALEGLLHAR
>NC_023064.1|WP_024078214.1|6914467_6916222_+|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase
MREQQEHTFATHDGVELFYRHWPATAPADGEPRKAILLFHRGHEHSGRIAHLVDELNLPQFDFFAWDARGHGQSPGARGDSPSFATSARDVQTFCDHVGATHGIEEENVAVIAQSVGAVIAATWVHDYAPKIRALVLASPAFKVKLYVPFARPGLALMRKFRGNFFVNSYVKAKFLSHDPERVASYDSDPLITKAISVNVLLGLYEAADRVVADAQAIQVPTQLLISGSDFVVHRKPQQQFFDRLGSLKKELHILPGFFHDTLGERNRAVAVSSARRFILQNFTQPLDRASLLDADKLGATCAESEALAAPLPRNSLRDLYWRMTRASMGLGKNLSDGVKLGFDTGFDSGSTLDYVYRNTPTGKGALGRMIDTNYLNSIGWRGIRQRKLNVEELLRLAMAKLRDEQREVRIVDIAAGHGRYILEALQGVSPLPESILLRDYSDINVRDGSALIREKGLGEIAQFVKGDAFDRADLAALAPKPTLAVVSGLYELFADNAMVGGSLAGLADAVEPGGYLVYTGQPWHPQLELIARALTSHRQGQAWVMRRRSQAEMDQLVEAAGFRKITQRVDEWGIFTVSLAQKI
>NC_023064.1|WP_024078213.1|6913833_6914457_+|CDP-alcohol-phosphatidyltransferase-family-protein
MISIYQLKPRFQNLLRPLVQRLYDNGTTANQITVLAGVVSLLVGLLIAGFAQHLWLFALIPLWMILRMALNAIDGMLAREFGQQSRLGAYLNELCDVIADSALILPFALIPGVSLVPVLLVTLLAVFSEYAGVLGPMIGASRRYDGPMGKSDRAFVLGVLAMGVALGWLGAGWVDVVMWLVAALLAYTLINRVRQGLKEEHSISPSA
>NC_023064.1|WP_024078212.1|6911419_6913345_-|protease-modulator-HflK
MQLDLEAEGASVEGLPRFQQGLFHARRLRQAGISLTLLAISGWVLALFVALFAPLSIWPVVLINCASALLVLVAGLQSAWWVADWRAQALEGTIVELIEPPVEPAAWHRDLINRFGSGLLAQIGAPVLWLVGWSLLALVSVLEFWNLALPAAAVSQSASIGAALALALAFGLLVFERRLAQETAAQWPEAAQLVQLSRVAIICLVVSAICLLFAGAEAVWPLRLATLIGLLPALVALEFLLRGVLSLFSPRQPRLEPRLMAQSFIAGLLRWPPQPLQALQHELHNRFGIDLRQIWAFTYMRRAFLPVLLVVLAVGWALTGVHEVPLQGRGIYERFGKPVEVFGPGLHAGLPWPLGRVLSVENGVVHELATSISEAATPELAAAEGPAPLIANRLWDASHVNDKSQVIASSSGDKQSFQIVNMDVRFVYRIGLTDQAALAATYNSADVPTLIRSTASRILVHDFASRTLDELLGEQRTRLADEIGHAVQADLQTLDSGVEILATVVEAIHPPAGAANAYHGVQAAQIGAQALISRERGAASEQTNQALLQASTARDQALAIAREVSAGAQAADLRFSAEQKAYATAGRAFVLEQYLGQLSQGLAHAKLLILDHRLGANSAPTIDLRSFTLPADPSVPRKAVQ
>NC_023064.1|WP_074059250.1|6928393_6928786_-|hypothetical-protein
MNLADFVSVLSAGEKIDGCQLTTSDAVALASLHFPSHAYCLVADWAILDLDIPTRQRKAITDRQLIPALVYALTVIQDSKGRFPPGDWVRTTLGVSFTHDCLFRTKNTVYVLMGTGRRLHTDLDIALSLC
>NC_023064.1|WP_017341625.1|6929148_6929811_-|DUF2384-domain-containing-protein
MADEGRTIMSETERWIVKCQKTEDGTGDIIIDLPQELLDQMRLGVGDDLELTVVNGTLVLTPVCNATSVRPMFAGVLRQDVYHAYRMRLETLLHISVNASDLDIHDMIVAGFSVSLIKMLCDDGTLSDEERDRIIQPKTLKTKLSANQLLTLHESDRLFRFAHITAMAEVIFGDKGKAKQWLSKPKARFLGESPSAMVTTTFGTHLVEEMLIQVSEGMSF
>NC_023064.1|WP_017341626.1|6930014_6930563_+|3'-5'-exonuclease
MHPDELYVSVDVETSGPIPGEYSLLSIGACLVAQPVTSIYLELRPDSPKHDPEALAVSGLSLEKLEREGLAPQQAMLTFDQWLKSSCQPGQKVIFVGLNAPFDWSFVNYYFHKYLETNPFGFTAIDMKAYFMGAVGCSWQETKSSKMTAALKPLSEPNHNALDDARFQAELFALMLAGKGKR
>NC_023064.1|WP_017341627.1|6930591_6931074_-|Mov34/MPN/PAD-1-family-protein
MTDIAWRWRWPEVNSELLVSQAVADILDSHRQGLFGVERGGQLFVNPVDPKGLLLALATLPHRADRSGWSWLELDAERCRQEIQAANEQGLRLVGYWHTHPQSVPVISPADIGSFSKFAARYTQDLPHPIAVIVGKSEKPEGIKAWSFRDGRYVEATCIR
>NC_023064.1|WP_031319187.1|6931070_6932855_-|ThiF-family-adenylyltransferase
MDALADPIKTPLQRGIAALRNTLGQDAADALLQPAPTRADEAACFHFPLPTDYTGQERRLRIGFPSNFPRGLLRLNVEPSPWLVWPHATKSGLCLHGFQERPIMGSPEVVVEDSLARLAQIVSLSKMGSNQATRDIEFQNEITTYWSFQHGQSFQNLLLLDRPQAASQLFALSDPRRVMPSGQETVWLASNVAALKGHYRRVVGRSAVIRAAETPGFYVKLQTYPDIRTPDPEDLLLWLTPHLQPDDAEQLLAWFELHGTLASRWIVLELPGGADAPTYCLNVRSLGVQQERGAKFGLRTARRRPAIANAHPPALVRATALDVLDRASILSRDISGTAQHLENARVVCVGVGSLGSAVAIQLARSGVGHLTLIDPDTLVSANLGRHVLGADSLGRLKASALRDKILLDLPTTECTAYATFAEVVMSSKPEVFDNADLVVITTADWQSEVTVWRAKSSGAPWGLLQAWSEPYTQVGHALFAPAGTFDGRQLFTDVGDFLHRFTEWPGGGVVPLPACGESFIPGGSLGMTNIASMVSHTALRALTGNIATASWVSSIYRPEDVLSLGGQYHGPKLPEGAQQILLERGWPEDKDETV
>NC_023064.1|WP_019821279.1|6932838_6934089_-|nucleotidyltransferase
MLLSNEQTKRSSWEYFLLRAAREISLSEAQYEKINDRYSQLEKILSASDNPLLAEAHIFVQGSMRLKTTIKPIPGAPADLDTIDADAIIWLPHAQGAGAKEVLEAIEQRFREGSRVQEEVKQLRRGIRIVYADENPGFHIDVTPARAINGNGEANGEGKLEVPDRVTGWKASSPIPYSNWLQVASAQEISLESLVVAKSQRMLDAATQDPLPHYQDYIDQDPLRATIKLLKRHRDEWAIKTRSADTRPISAVITTLATHAYLDVVKESQSKPLAPLDAILEIVRRMPQHIAQRGSDCYVYNPADNGENFAEKWNRPGEGQGYRQAFAKWHADASASVSLGLESFESNDSFAEAVKKNFGIAPAFITAVNNEIPANWTMPGRPDGTTRNSASMGSLFGGASGGGTSQSSVKPVGRLG
>NC_023064.1|WP_019821280.1|6934088_6935255_-|SAVED-domain-containing-protein
MAEQEDAKPASGRFNTNDETKRIVWTQTAGHCELCGTDLTFDYRAGKPMKWGEVAHILPASPKGPRGRADHDAEAHTNDTANLMLLCPGCHDKIDRDADGYPENDLSGLHQAYLERIRLAATTPDGGRAIPLIVQSQHFQTINDIPVRDLLTAMSAEGLTAFDQGIKIAFAAPGPRGRDTTYWQNVKDSVQYELEQQLKRRGGTYGDSPALAVVGLADIPALMMLGQSIGDRSKRLIFSFHREHLLRWPDQSAEPPSFLFTPPPNGDGPLALVLSISAQVPVRDVTDALPGARIAELSIPEPSYAMVQNRRVIHAFRDALQIRLSQLEALTPDPIHVFAAIPAALAIEFGALLTTQHQHTYLIFDRDKENQDRFTQTLQLGPVAQEAM
>NC_023064.1|WP_019821281.1|6935610_6938754_-|efflux-RND-transporter-permease-subunit
MIAALIRWSVANRFLVLLATLFVTAWGIWSVQSTPIDALPDLSDVQVIIRTPYPGQAPQIVENQVTYPLATTMLSVPGAKTVRGYSFFGDSFVYVLFEDGTDLYWARSRVLEYLSQIQSRLPASAKPALGPDATGVGWIFQYALVDRNGGHDLAQLRALQDWFLKFELKTLPNVAEVATVGGMVKQYQVQLDPLKLASFGITQAEVADAIGKANQETGGAVLEMAETEFIVRASGYLKTLNDFRAIPLKLGSGGVPVTLGDVATIQLGPEMRRGITELDGEGETVGGVVILRSGKNARETIAAVKAKLDELKSSLPAGVEIVTTYDRSKLIDRAVENLSHKLLEEFIVVALVCGIFLWHLRSSLVAIISLPVGVLIAFIVMRYQGINANIMSLGGIAIAIGAMVDAAVVMIENAHKKVEAWHVANPGEELKGERHWHVMTEAAAEVGPALFFCLLIITLSFIPVFTLQAQEGRLFGPLAFTKTYAMAAAAGLSVTLVPVLMGYWIRGRIPSEQQNPLNRWLIRIYQPALDAVLRRPKITLLVALLVFISALWPMSRLGGEFLPPLDEGDLLYMPSALPGLSAQKAAQLLQQTDRLIKTVPEVEHVFGKAGRAETATDPAPLEMFETTIQFKPQEQWRPGMTQEKLVEELDRVVRVPGLTNIWIPPIRNRIDMLATGIKSPIGVKVAGTNLTEIDAATQAVERVAKDVPGVSSALAERLTGGRYIDVDIDRKAAARYGLNIDDVQSIVAGAIGGENVGETIEGLARFPINVRYPREWRDSLGALEQLPIYTPLGSQITLGTVAKVKVSDGPPMLKSENARPSGWVYIDVRGRDIASVVADLRRVVSEQVKLQPGMSLSYSGQFEFLERANARLKLVVPATLLIIFVLLYLTFARFDEALLIMATLPFALSGGAWFLYLLGFNLSVATGVGFIALAGVSAEFGVIMLLYLKNAWAEREDVGDRTERGLVAAIREGAVQRVRPKAMTVAVVIAGLLPILLGSGTGSEVMSRIAAPMIGGMVTAPLLSLFVIPAAYHLMRRRHLSVEPGKH
>NC_023064.1|WP_019821283.1|6938750_6940235_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MNLRKWNGALLVGLSLVLGVAGGYWFAQQGMSEVPGAAPEQSLPSLDERKVLYWYDPMSPQQKFDKPGKSPFMDMQLVPQYADIKGDSASVRIDPSLTQNLGVRLATVSRGVFASSLEVVGVLAFNERDVAVIQARTAGFVERVYAHAPGDVIKANAAMADILVPEWAAAQEEFLALKRSGDAGLLAAARQRLRLTGMPAASIAQVERSGKVQPNLTLTSPISGVLQELNVREGMTVAAGETLARVNGLSSVWLALAVPETESGSILMGQAAEARLPAFPGVVLKGVVSAILPETNPDSRTLRVRVELPNPEGRLRPGMTARVSLNRSTEQSVLWVPSEAVIRTGRRALVMLAEDAGRYRPVEVLIGQENDGKTAILKGLEEGQKVVTSGQFLLDSEASLKGIVANSEEQSPPSAAASSFHEADGQIVEINDKEVTLAHGPFKTLGMPGMTMTFPLANPALMQGLKTGDKVRIAVSQTDDGLRVERLGKSGGQL
>NC_023064.1|WP_019821285.1|6940231_6941488_-|TolC-family-protein
MNSKCYCTGWSLVAGLAASVLALPSLAAALTLDEALQLAENNAPSLTAQDAKIQAASSAAIPAGELPDPKLLLGVQNYPIGGPDRWSIDQDFMTMQMVGVSQEMPNSAKRKARIEVADAAINRAAAERRVERLKVRQATALAWINSFSVERKDALFQDFYKENRLLADTVRAQIAGGRAQPADAVTPKQEAAQLEEQQDDLIRQRAQARAALKRWIGPAANDKPVGSLPEWPVEASGYSHKLQHHPELAAFEPMTREAQAKVREAEAEKQSDWSWEVDYQHRGRQFGDMVSVQLSWDLPLFPDSRQNPKIAAKHAELNQLEAEREALSREHTQQLEDELADYERLNRAVHRTQDSLLPLAKEKVELSMASYRSGKGDLSSVVAARRELIEARLKQIDVEEQRALTSARLYFAYGESSQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_023064_2	2.1\|3039961\|39\|NC_023064\|CRISPRCasFinder	3039961-3039999	39	NC_023064.1	1371320-1371358	2	0.949

1. spacer 2.1|3039961|39|NC_023064|CRISPRCasFinder matches to position: 1371320-1371358, mismatch: 2, identity: 0.949

gaggaacactgtaactgtggccagcgggcttgctgtggc	CRISPR spacer
gaggaacactgtcactgtggcaagcgggcttgctgtggc	Protospacer
************ ******** *****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

420805 : 434141

Pseudomonas_phage(100.0%)

tail,integrase

attL 417049:417066|attR 434356:434373

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
417049:417066	attL	NA	NA	NA	NA
WP_024072860.1\|420805_421030_-	hypothetical protein	A0A1B0VP78	Pseudomonas_phage	1.7e-30	94.6
WP_041160816.1\|421900_422203_+	hypothetical protein	NA	NA	NA	NA
WP_024072862.1\|422529_423294_-	hypothetical protein	NA	NA	NA	NA
WP_024072864.1\|424014_424617_-\|tail	tail assembly protein	A0A1B0VMK7	Pseudomonas_phage	5.6e-97	90.0
WP_024072865.1\|424628_425009_-	hypothetical protein	A0A1B0VML3	Pseudomonas_phage	1.4e-66	95.2
WP_024072866.1\|425114_425723_-	hypothetical protein	A0A1B0VMK2	Pseudomonas_phage	6.6e-106	94.6
WP_024072867.1\|425719_426028_-	hypothetical protein	A0A1B0VML7	Pseudomonas_phage	1.3e-46	87.3
WP_024072868.1\|426364_428167_-	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	0.0e+00	99.5
WP_024072869.1\|428153_429035_-	toprim domain-containing protein	A0A1B0VML8	Pseudomonas_phage	2.7e-148	93.2
WP_024072870.1\|429031_429259_-	hypothetical protein	A0A1B0VRK9	Pseudomonas_phage	8.9e-32	90.7
WP_024072871.1\|429251_429539_-	hypothetical protein	A0A1B0VMJ4	Pseudomonas_phage	2.6e-36	80.6
WP_024072872.1\|429545_429878_-	hypothetical protein	NA	NA	NA	NA
WP_024072873.1\|429874_430138_-	hypothetical protein	A0A1B0VMJ2	Pseudomonas_phage	9.4e-25	73.5
WP_158244162.1\|430134_430620_-	ash family protein	A0A1B0VP73	Pseudomonas_phage	2.2e-35	60.5
WP_024072875.1\|430616_431090_-	Rha family transcriptional regulator	A0A1B0VMK9	Pseudomonas_phage	1.4e-66	82.1
WP_024072876.1\|431086_431392_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_024072877.1\|431392_431644_-	AlpA family phage regulatory protein	A0A1B0VNF0	Pseudomonas_phage	3.9e-12	51.3
WP_024072878.1\|431805_432816_-	hypothetical protein	NA	NA	NA	NA
WP_024072879.1\|432938_434141_-\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	9.1e-224	95.0
434356:434373	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1097267 : 1106815

uncultured_Caudovirales_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008437351.1\|1097267_1097618_+	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	2.1e-32	57.5
WP_008437350.1\|1097640_1098930_+	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	2.2e-175	73.2
WP_008437349.1\|1098939_1099410_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	4.7e-51	60.9
WP_008437348.1\|1099409_1100144_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.2e-104	79.4
WP_008437347.1\|1100163_1100712_+	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	2.6e-45	53.4
WP_024073377.1\|1100967_1102923_-	DEAD/DEAH box helicase	A0A1B3B0M9	Gordonia_phage	1.1e-24	25.8
WP_019818088.1\|1102919_1104800_-	hypothetical protein	NA	NA	NA	NA
WP_008437341.1\|1104910_1106815_-	type I DNA topoisomerase	A0A1S5V180	Saudi_moumouvirus	1.0e-64	29.8

DBSCAN-SWA_3

1495189 : 1598677

103

Pseudomonas_phage(20.0%)

plate,lysis,holin,tRNA,transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024073683.1\|1495189_1496314_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_024073685.1\|1497321_1498242_+	arginase	NA	NA	NA	NA
WP_024073686.1\|1498238_1498616_+	EamA family transporter	NA	NA	NA	NA
WP_024073687.1\|1498612_1499029_+	EamA family transporter	NA	NA	NA	NA
WP_024073688.1\|1499079_1499946_-	fatty acid desaturase	NA	NA	NA	NA
WP_024073689.1\|1500022_1500793_-	MipA/OmpV family protein	NA	NA	NA	NA
WP_024073691.1\|1501034_1501748_+	MtnX-like HAD-IB family phosphatase	NA	NA	NA	NA
WP_024073692.1\|1501740_1503135_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_024073693.1\|1503131_1504007_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_024073694.1\|1504275_1505400_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_024073695.1\|1505399_1507178_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_024073696.1\|1507167_1508565_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_024073697.1\|1508622_1508961_-	GlpM family protein	NA	NA	NA	NA
WP_024073698.1\|1508960_1510301_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_041160851.1\|1510297_1512199_-	sensor histidine kinase	NA	NA	NA	NA
WP_024073700.1\|1512453_1513188_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.5e-32	38.9
WP_024073701.1\|1513184_1513856_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_024073702.1\|1513855_1514602_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_024073703.1\|1514796_1515723_-	glutamate/aspartate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_024073704.1\|1516037_1517576_-	glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_024073705.1\|1517866_1518622_-	DeoR/GlpR family transcriptional regulator	A0A077SK06	Escherichia_phage	7.9e-24	29.5
WP_024073706.1\|1518717_1520223_-	glycerol kinase GlpK	NA	NA	NA	NA
WP_024073707.1\|1520304_1521159_-	aquaporin	NA	NA	NA	NA
WP_024073708.1\|1521486_1521957_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_024073709.1\|1522263_1523379_-	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.1e-21	37.7
WP_024073710.1\|1523375_1524296_-	ornithine carbamoyltransferase	A0A1J0F9B8	Only_Syngen_Nebraska_virus	7.1e-19	28.8
WP_024073711.1\|1524730_1526839_+	molybdopterin oxidoreductase family protein	NA	NA	NA	NA
WP_024073712.1\|1526925_1527264_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_024073713.1\|1527341_1527812_-	bacterioferritin	NA	NA	NA	NA
WP_010564137.1\|1528013_1528232_-	bacterioferritin-associated ferredoxin	NA	NA	NA	NA
WP_024073714.1\|1528474_1529077_+	peroxiredoxin	NA	NA	NA	NA
WP_024073715.1\|1529141_1529813_-	ribonuclease T	NA	NA	NA	NA
WP_024073716.1\|1529809_1530856_-	dihydroorotase	NA	NA	NA	NA
WP_024073717.1\|1531012_1531921_+	OmpA family protein	NA	NA	NA	NA
WP_024073718.1\|1532050_1533268_+	argininosuccinate synthase	NA	NA	NA	NA
WP_017844627.1\|1533879_1534512_+	response regulator transcription factor	NA	NA	NA	NA
WP_024073719.1\|1534585_1534768_-	hypothetical protein	NA	NA	NA	NA
WP_024073720.1\|1534875_1535514_-	endonuclease III	NA	NA	NA	NA
WP_024073721.1\|1535539_1536034_-	hypothetical protein	NA	NA	NA	NA
WP_024073722.1\|1536026_1536611_-	RnfABCDGE type electron transport complex subunit G	NA	NA	NA	NA
WP_024073723.1\|1536607_1537567_-	RnfABCDGE type electron transport complex subunit D	NA	NA	NA	NA
WP_024073724.1\|1537553_1538516_-	electron transport complex subunit RsxB	NA	NA	NA	NA
WP_041161112.1\|1538512_1539085_-	NADH:quinone oxidoreductase	NA	NA	NA	NA
WP_024073726.1\|1539188_1541240_-\|tRNA	methionine--tRNA ligase	NA	NA	NA	NA
WP_024073727.1\|1541412_1542507_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_024073728.1\|1542968_1543292_-	ferredoxin family protein	NA	NA	NA	NA
WP_024073729.1\|1543434_1546026_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	5.1e-30	22.5
WP_024073730.1\|1546224_1546959_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	6.3e-119	87.7
WP_024073732.1\|1547553_1547898_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	5.1e-47	84.3
WP_024073733.1\|1547919_1548435_+	hypothetical protein	NA	NA	NA	NA
WP_024073734.1\|1548438_1549050_+\|plate	phage baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	5.0e-45	57.1
WP_024073735.1\|1549059_1549392_+\|plate	phage baseplate protein	A0A2H4JI46	uncultured_Caudovirales_phage	9.7e-35	66.4
WP_024073736.1\|1549388_1550384_+\|plate	baseplate J/gp47 family protein	A0A2H4JC04	uncultured_Caudovirales_phage	9.8e-115	65.7
WP_024073737.1\|1550380_1551010_+\|tail	phage tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	4.4e-44	54.3
WP_024073738.1\|1551010_1552330_+\|tail	phage tail protein	A0A088FQW7	Escherichia_phage	1.6e-32	26.0
WP_024073739.1\|1552329_1552695_+	hypothetical protein	NA	NA	NA	NA
WP_024073740.1\|1552760_1552961_+	hypothetical protein	NA	NA	NA	NA
WP_024073741.1\|1552963_1554130_+\|tail	tail protein	B0ZSG8	Halomonas_phage	1.6e-124	57.2
WP_024073742.1\|1554129_1554636_+\|tail	phage major tail tube protein	Q6R4W3	Vibrio_virus	1.3e-22	35.1
WP_024073743.1\|1554685_1555258_+\|tail	phage tail assembly protein	B0ZSH0	Halomonas_phage	1.6e-29	39.6
WP_024073745.1\|1555386_1556532_+	hypothetical protein	NA	NA	NA	NA
WP_024073746.1\|1556531_1556915_+\|tail	phage tail protein	B0ZSH2	Halomonas_phage	5.0e-35	58.3
WP_024073747.1\|1556907_1557120_+\|tail	tail protein X	A0A2H4JGD9	uncultured_Caudovirales_phage	3.1e-18	62.9
WP_024073748.1\|1557129_1558140_+	hypothetical protein	A0A2H4JH05	uncultured_Caudovirales_phage	1.0e-98	55.6
WP_024073749.1\|1558162_1558720_+	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	2.3e-76	75.4
WP_024073750.1\|1558707_1559208_+\|lysis	lysis protein	B5TK84	Pseudomonas_phage	3.0e-40	60.5
WP_024073751.1\|1559289_1559790_+	CinA family protein	B5TK85	Pseudomonas_phage	7.4e-71	84.3
WP_024073752.1\|1559873_1560932_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.4e-111	62.4
WP_024073753.1\|1560940_1561408_+	recombination regulator RecX	NA	NA	NA	NA
WP_024073754.1\|1561599_1562712_-	TIGR00730 family Rossman fold protein	NA	NA	NA	NA
WP_155766381.1\|1562790_1562955_+	hypothetical protein	NA	NA	NA	NA
WP_024073755.1\|1563090_1563531_-	hypothetical protein	NA	NA	NA	NA
WP_024073756.1\|1563729_1564449_+	DTW domain-containing protein	NA	NA	NA	NA
WP_024073758.1\|1564700_1565351_+	response regulator transcription factor	NA	NA	NA	NA
WP_017137081.1\|1565426_1565789_+	diacylglycerol kinase	NA	NA	NA	NA
WP_024073759.1\|1565792_1566719_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_024073760.1\|1566843_1567623_+	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_024073761.1\|1567770_1568466_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_024073762.1\|1568469_1568931_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	9.0e-39	52.0
WP_024073763.1\|1568999_1569710_-	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_024073764.1\|1569781_1570255_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_172831374.1\|1570367_1571696_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_024073766.1\|1571996_1573898_+	potassium transporter Kup	A7K9V6	Acanthocystis_turfacea_chlorella_virus	1.7e-75	33.4
WP_024073767.1\|1574122_1575229_+	NADH:flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA
WP_024073768.1\|1575499_1575685_+	hypothetical protein	NA	NA	NA	NA
WP_024073769.1\|1575753_1577379_-	glucan biosynthesis protein D	NA	NA	NA	NA
WP_024073771.1\|1577909_1579334_-	gamma-aminobutyraldehyde dehydrogenase	NA	NA	NA	NA
WP_024073772.1\|1579503_1580313_-	ABC transporter permease	NA	NA	NA	NA
WP_024073773.1\|1580302_1581232_-	ABC transporter permease	NA	NA	NA	NA
WP_024073774.1\|1581233_1582268_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.1e-27	33.0
WP_024073775.1\|1582467_1583619_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_024073776.1\|1583692_1585150_-	gamma-aminobutyraldehyde dehydrogenase	NA	NA	NA	NA
WP_024073777.1\|1585283_1586195_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_024073778.1\|1586363_1587071_+	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_024073779.1\|1587432_1589055_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_024073780.1\|1589054_1589567_+	purine-binding chemotaxis protein CheW	NA	NA	NA	NA
WP_024073781.1\|1589563_1590823_+	chemotaxis protein CheR	NA	NA	NA	NA
WP_024073782.1\|1590819_1591518_+	purine-binding chemotaxis protein CheW	NA	NA	NA	NA
WP_024073783.1\|1591514_1593794_+	hybrid sensor histidine kinase/response regulator	Q56AR1	Bacillus_thuringiensis_phage	4.4e-09	28.0
WP_024073784.1\|1593790_1594801_+	chemotaxis response regulator protein-glutamate methylesterase	Q6XM27	Feldmannia_irregularis_virus	5.8e-06	40.3
WP_024073785.1\|1594850_1595852_+	PleD family two-component system response regulator	A0A127AWB9	Bacillus_phage	1.6e-16	35.2
WP_102625207.1\|1596008_1597103_+	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	2.0e-07	46.6
WP_024073787.1\|1597174_1598677_+\|tRNA	lysine--tRNA ligase	A0A2K9KZX5	Tupanvirus	9.4e-85	39.4

DBSCAN-SWA_4

1670928 : 1675886

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024073847.1\|1670928_1671678_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	8.3e-66	51.4
WP_169850588.1\|1671719_1672355_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	7.8e-41	52.3
WP_024073848.1\|1672563_1673400_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	8.2e-06	33.3
WP_024073849.1\|1673506_1674511_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.3e-34	36.2
WP_002554837.1\|1674721_1674931_-	cold-shock protein	Q9AZD3	Lactococcus_phage	2.2e-16	66.7
WP_003189215.1\|1675319_1675886_+	dCTP deaminase	S5VM63	Pseudomonas_phage	3.7e-74	73.3

DBSCAN-SWA_5

3261998 : 3363643

104

Pseudomonas_phage(47.37%)

capsid,lysis,holin,tRNA,terminase,integrase,transposase,tail

attL 3261951:3261995|attR 3321633:3321677

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3261951:3261995	attL	NA	NA	NA	NA
WP_024075226.1\|3261998_3263192_-\|integrase	site-specific integrase	J7HXC4	Pseudomonas_phage	1.5e-122	58.2
WP_024075227.1\|3263422_3264277_-	DNA adenine methylase	Q5QF26	Pseudomonas_virus	6.5e-75	50.9
WP_024075228.1\|3264654_3265521_-	hypothetical protein	Q5QF30	Pseudomonas_virus	8.7e-35	42.9
WP_024075229.1\|3265697_3266756_+	hypothetical protein	NA	NA	NA	NA
WP_024075230.1\|3266938_3269002_-	DNA cytosine methyltransferase	Q5QF27	Pseudomonas_virus	1.1e-224	57.2
WP_024075231.1\|3269049_3269607_+	hypothetical protein	NA	NA	NA	NA
WP_024075233.1\|3269957_3270965_-	nucleoid-associated protein YejK	L7TI92	Pseudomonas_virus	5.3e-124	65.1
WP_144113504.1\|3271085_3271724_+	hypothetical protein	NA	NA	NA	NA
WP_024075235.1\|3271707_3272037_-	hypothetical protein	A0A2H4JAQ1	uncultured_Caudovirales_phage	4.8e-18	59.5
WP_024075236.1\|3272106_3272577_-	hypothetical protein	A0A2H4J101	uncultured_Caudovirales_phage	7.5e-73	87.4
WP_024073683.1\|3272838_3273963_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_024075237.1\|3274078_3275707_-	YqaJ viral recombinase family protein	A0A2H4J6P1	uncultured_Caudovirales_phage	8.3e-204	71.8
WP_041160923.1\|3275703_3276510_-	phage recombination protein Bet	U6C6J0	Ralstonia_phage	3.9e-69	54.3
WP_024075238.1\|3276678_3276873_-	hypothetical protein	Q9MC67	Pseudomonas_phage	2.1e-05	42.9
WP_024075239.1\|3276869_3277061_-	hypothetical protein	NA	NA	NA	NA
WP_041160924.1\|3277057_3277495_-	hypothetical protein	A0A1B0VMC3	Pseudomonas_phage	4.2e-62	79.3
WP_024075241.1\|3277646_3278420_-	hypothetical protein	A0A1B0YZY3	Pseudomonas_phage	3.1e-60	45.5
WP_024075242.1\|3278862_3279114_-	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_024075243.1\|3279278_3279833_-	hypothetical protein	NA	NA	NA	NA
WP_024075244.1\|3279905_3280124_-	hypothetical protein	A0A2H4J177	uncultured_Caudovirales_phage	8.1e-22	82.1
WP_024075246.1\|3280874_3281201_-	DUF2388 domain-containing protein	NA	NA	NA	NA
WP_024075247.1\|3281309_3281807_-	DUF4411 family protein	NA	NA	NA	NA
WP_024075248.1\|3281803_3282937_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_024075249.1\|3283102_3283345_-	hypothetical protein	NA	NA	NA	NA
WP_024075250.1\|3283344_3284001_-	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	3.0e-43	50.3
WP_024075251.1\|3284110_3284290_+	Cro/Cl family transcriptional regulator	R9TPV3	Vibrio_phage	5.6e-05	48.9
WP_024075252.1\|3284372_3284795_+	phage regulatory CII family protein	A0A2D1GNM7	Pseudomonas_phage	1.4e-30	47.1
WP_024075253.1\|3284865_3285717_+	Rha family transcriptional regulator	A0A2H4J111	uncultured_Caudovirales_phage	1.3e-54	69.4
WP_024075254.1\|3285718_3286648_+	helix-turn-helix domain-containing protein	A0A1B0VME0	Pseudomonas_phage	2.9e-52	66.7
WP_041160925.1\|3286634_3287432_+	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	1.1e-92	66.2
WP_024075256.1\|3287428_3287899_+	hypothetical protein	A0A2H4J106	uncultured_Caudovirales_phage	2.5e-52	60.9
WP_024075257.1\|3287895_3288495_+	recombination protein NinG	A0A0U1VZM0	Pseudomonas_phage	2.5e-65	63.2
WP_024075258.1\|3288491_3289169_+	hypothetical protein	NA	NA	NA	NA
WP_024075260.1\|3290073_3290406_+\|holin	phage holin, lambda family	A0A2H4J1U5	uncultured_Caudovirales_phage	1.6e-53	92.7
WP_024075261.1\|3290462_3290900_+	proteasome subunit beta	A0A2H4J821	uncultured_Caudovirales_phage	9.8e-43	62.9
WP_024075263.1\|3291309_3291933_+	hypothetical protein	A0A1B0VRJ1	Pseudomonas_phage	5.2e-114	96.1
WP_024075264.1\|3291964_3292441_+	DUF2280 domain-containing protein	A0A1B0VMH2	Pseudomonas_phage	3.4e-81	97.5
WP_024075265.1\|3292415_3293735_+\|terminase	phage terminase	A0A1B0VP58	Pseudomonas_phage	1.1e-227	87.4
WP_024075266.1\|3293734_3295195_+	DUF4055 domain-containing protein	A0A2H4J0H4	uncultured_Caudovirales_phage	3.2e-231	80.7
WP_041160926.1\|3295112_3296225_+\|capsid	minor capsid protein	A0A2H4J3G9	uncultured_Caudovirales_phage	8.6e-136	68.6
WP_024075268.1\|3296233_3296719_+	hypothetical protein	A0A1B0VND3	Pseudomonas_phage	1.2e-22	35.3
WP_102643055.1\|3296730_3297276_-	hypothetical protein	NA	NA	NA	NA
WP_024075270.1\|3297435_3298209_+	hypothetical protein	A0A2H4J0I7	uncultured_Caudovirales_phage	2.0e-115	84.0
WP_024075271.1\|3298212_3299190_+	hypothetical protein	A0A2H4JIE6	uncultured_Caudovirales_phage	1.4e-153	82.5
WP_024075272.1\|3299244_3299550_+	hypothetical protein	A0A2H4J0G3	uncultured_Caudovirales_phage	3.5e-23	46.9
WP_024075273.1\|3299560_3299938_+	hypothetical protein	A0A2H4J0N2	uncultured_Caudovirales_phage	4.2e-42	75.2
WP_024075274.1\|3299940_3300333_+	hypothetical protein	A0A2H4IZB5	uncultured_Caudovirales_phage	7.9e-44	68.5
WP_041161196.1\|3300355_3300991_+	hypothetical protein	A0A1B0VMI1	Pseudomonas_phage	3.7e-107	91.5
WP_024075276.1\|3300987_3301407_+	hypothetical protein	A0A1B0VMI0	Pseudomonas_phage	2.7e-50	70.1
WP_024075277.1\|3301491_3302142_+	DUF2625 domain-containing protein	NA	NA	NA	NA
WP_024075278.1\|3302327_3302975_+\|tail	phage tail protein	A0A1B0VMG2	Pseudomonas_phage	6.8e-101	86.0
WP_024075279.1\|3302978_3303359_+\|tail	phage tail assembly chaperone	A0A2H4J9Y6	uncultured_Caudovirales_phage	2.8e-22	48.0
WP_024075280.1\|3303406_3303676_+	DUF1799 domain-containing protein	A0A2H4J4F7	uncultured_Caudovirales_phage	3.0e-18	52.4
WP_024075281.1\|3303672_3307014_+\|tail	phage tail tape measure protein	A0A1B0VMG8	Pseudomonas_phage	4.4e-135	36.8
WP_024075282.1\|3307013_3307352_+\|tail	phage tail protein	A0A1B0VMG7	Pseudomonas_phage	1.7e-55	85.7
WP_024075283.1\|3307363_3308116_+\|tail	phage minor tail protein L	A0A1B0VNE0	Pseudomonas_phage	7.4e-139	92.4
WP_024075285.1\|3309239_3310880_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.1e-62	43.4
WP_024075286.1\|3310991_3311336_+	hypothetical protein	A0A1B0VMC6	Pseudomonas_phage	3.8e-18	52.2
WP_024075287.1\|3311389_3311971_+\|tail	tail assembly protein	A0A1B0VME1	Pseudomonas_phage	2.8e-77	78.2
WP_024075288.1\|3312029_3315491_+\|tail	phage tail protein	A0A1B0VMH5	Pseudomonas_phage	0.0e+00	78.7
WP_024075289.1\|3315825_3316482_+	hypothetical protein	A0A2D1GNS6	Pseudomonas_phage	1.2e-92	73.4
WP_024075290.1\|3316544_3317297_+	hypothetical protein	A0A0S2SY45	Pseudomonas_phage	6.9e-36	39.6
WP_010466230.1\|3317454_3318435_-\|transposase	IS5-like element ISPre2 family transposase	A0A077K814	Ralstonia_phage	7.0e-97	59.0
WP_081730335.1\|3318466_3318778_+	hypothetical protein	A0A0A0YUD8	Pseudomonas_phage	1.7e-12	43.0
WP_024075292.1\|3318774_3319026_+	hypothetical protein	A0A0H5BIA0	Pseudomonas_phage	2.6e-16	57.5
WP_024075293.1\|3319083_3319617_+	glycoside hydrolase family 19 protein	A0A059VA40	Pseudomonas_phage	4.8e-76	79.7
WP_024075294.1\|3319613_3320129_+\|lysis	lysis protein	A0A2H4IZW4	uncultured_Caudovirales_phage	5.1e-67	82.9
WP_024075295.1\|3320351_3320792_-	VapA/VapB family virulence-associated protein	NA	NA	NA	NA
WP_017528106.1\|3321189_3321399_-	hypothetical protein	A0A2D1GNR5	Pseudomonas_phage	1.2e-11	59.7
WP_024075297.1\|3321802_3323041_-	MFS transporter	NA	NA	NA	NA
3321633:3321677	attR	NA	NA	NA	NA
WP_024075298.1\|3323196_3324009_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_024075299.1\|3324147_3324534_-	TIGR03067 domain-containing protein	NA	NA	NA	NA
WP_024075300.1\|3324911_3326240_+	LPS O-antigen chain length determinant protein WzzB	NA	NA	NA	NA
WP_024075301.1\|3326436_3327336_+	lipid A hydroxylase LpxO	H8ZJK8	Ostreococcus_tauri_virus	6.5e-33	36.7
WP_024075302.1\|3327353_3329858_-	DNA ligase D	A0A068CDF3	Rhizobium_phage	1.1e-48	36.3
WP_024075303.1\|3329884_3330736_-	Ku protein	A0A249XRB2	Mycobacterium_phage	3.3e-26	30.8
WP_024075304.1\|3330919_3331237_+	hypothetical protein	NA	NA	NA	NA
WP_024075305.1\|3331259_3332417_+	PQQ-dependent sugar dehydrogenase	NA	NA	NA	NA
WP_024075306.1\|3332619_3333099_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_024075307.1\|3333141_3333705_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_024075308.1\|3333829_3335173_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_024075309.1\|3335269_3338662_+	hypothetical protein	NA	NA	NA	NA
WP_024075310.1\|3338717_3339536_-	iron uptake system protein EfeO	NA	NA	NA	NA
WP_024075311.1\|3339563_3340889_-	deferrochelatase/peroxidase EfeB	NA	NA	NA	NA
WP_024075312.1\|3340885_3342088_-	iron uptake system protein EfeO	NA	NA	NA	NA
WP_024075313.1\|3342098_3342944_-	FTR1 family protein	NA	NA	NA	NA
WP_024075314.1\|3343111_3344134_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_143036970.1\|3344431_3344815_+	hypothetical protein	NA	NA	NA	NA
WP_041160930.1\|3344871_3345399_-	hypothetical protein	NA	NA	NA	NA
WP_024075316.1\|3345538_3346954_-	TolC family protein	NA	NA	NA	NA
WP_024075317.1\|3346950_3350130_-	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_024075318.1\|3350145_3351387_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_024075319.1\|3351591_3352488_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_024075320.1\|3352589_3353594_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_024075321.1\|3353622_3354165_+	ester cyclase	NA	NA	NA	NA
WP_024075322.1\|3354276_3354711_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_024075323.1\|3354707_3356177_+	FAD/NAD(P)-binding protein	NA	NA	NA	NA
WP_024075324.1\|3356173_3356839_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_024075325.1\|3356813_3357575_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_024075326.1\|3357714_3359088_+	MFS transporter	NA	NA	NA	NA
WP_051448925.1\|3359217_3360525_+	SidA/IucD/PvdA family monooxygenase	NA	NA	NA	NA
WP_041160931.1\|3360541_3360895_+	cupin domain-containing protein	NA	NA	NA	NA
WP_024075328.1\|3360882_3362016_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_024075329.1\|3362020_3363643_+\|tRNA	methionine--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_6

3458524 : 3532154

Trichoplusia_ni_ascovirus(28.57%)

transposase,integrase

attL 3504766:3504782|attR 3535401:3535417

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024075410.1\|3458524_3459439_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_024075411.1\|3459504_3460362_-	SDR family oxidoreductase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	1.1e-69	49.5
WP_024075412.1\|3460455_3461667_-	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_041161205.1\|3461867_3463481_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.4e-17	31.8
WP_024075414.1\|3463545_3463914_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041161206.1\|3464012_3464762_+	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	3.5e-24	34.6
WP_024075416.1\|3465025_3465643_-	CatB-related O-acetyltransferase	A0A2R8FE91	Brazilian_cedratvirus	2.4e-31	43.1
WP_073663301.1\|3466283_3467411_+\|integrase	integrase	NA	NA	NA	NA
WP_028688854.1\|3467688_3468981_+\|integrase	integrase	NA	NA	NA	NA
WP_023629719.1\|3469759_3471106_-	aromatic acid/H+ symport family MFS transporter	NA	NA	NA	NA
WP_024075419.1\|3471179_3472469_-	salicylate 1-monooxygenase	NA	NA	NA	NA
WP_023629248.1\|3472596_3473499_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023629249.1\|3473572_3473800_-	DUF2790 domain-containing protein	NA	NA	NA	NA
WP_023629250.1\|3473956_3474892_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023663266.1\|3475039_3476101_+	HlyD family secretion protein	NA	NA	NA	NA
WP_078451698.1\|3476090_3477167_+	DUF2955 domain-containing protein	NA	NA	NA	NA
WP_023630205.1\|3477389_3478841_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_024075420.1\|3479209_3480124_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.4e-14	38.9
WP_024075421.1\|3480141_3480858_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	3.6e-10	25.8
WP_023048108.1\|3480857_3481616_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	7.4e-14	28.0
WP_023048107.1\|3481612_3482521_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_024075423.1\|3483645_3485097_-	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_023048105.1\|3485206_3486574_-	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_023048104.1\|3486812_3488042_-	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA
WP_023628647.1\|3488126_3489104_-	carbon starvation induced protein CsiD	NA	NA	NA	NA
WP_023048102.1\|3489296_3490016_+	DNA-binding transcriptional regulator CsiR	NA	NA	NA	NA
WP_024075425.1\|3490393_3491353_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_024075426.1\|3491450_3493541_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA
WP_024075427.1\|3493576_3495322_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA
WP_049950174.1\|3495622_3496996_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_031637015.1\|3497495_3498668_-	hypothetical protein	NA	NA	NA	NA
WP_024075428.1\|3498821_3500183_-	allantoin permease	NA	NA	NA	NA
WP_023662939.1\|3500829_3501774_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA
WP_023048095.1\|3501774_3502539_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_023048094.1\|3502595_3503834_-	CoA transferase	NA	NA	NA	NA
WP_023048093.1\|3503860_3505063_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
3504766:3504782	attL	NA	NA	NA	NA
WP_023048092.1\|3505072_3506614_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA
WP_023628973.1\|3506617_3507403_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_023048090.1\|3507639_3508506_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_023048089.1\|3508567_3509722_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_023048087.1\|3510625_3510823_+	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA
WP_023048086.1\|3510862_3511807_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023048085.1\|3511910_3512540_+	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_023048084.1\|3512623_3513028_+	DoxX family protein	NA	NA	NA	NA
WP_023628975.1\|3513802_3514597_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_023048080.1\|3514691_3515048_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_023048079.1\|3515210_3516110_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023048078.1\|3516572_3517388_+	dioxygenase	NA	NA	NA	NA
WP_023048077.1\|3517384_3518056_+	hypothetical protein	NA	NA	NA	NA
WP_071576115.1\|3518408_3518693_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023628979.1\|3518991_3519981_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_028688847.1\|3520098_3521217_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_023048074.1\|3521546_3521780_-	hypothetical protein	NA	NA	NA	NA
WP_023628980.1\|3522012_3523257_-	ATP-binding protein	NA	NA	NA	NA
WP_023628983.1\|3524099_3524537_-	hypothetical protein	NA	NA	NA	NA
WP_023628984.1\|3524619_3524910_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_024075430.1\|3525807_3526125_-	DUF3325 family protein	NA	NA	NA	NA
WP_024075431.1\|3529479_3530340_-	TniB family NTP-binding protein	NA	NA	NA	NA
WP_024075432.1\|3530336_3532154_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
3535401:3535417	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4403210 : 4413228

uncultured_Caudovirales_phage(71.43%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024076146.1\|4403210_4404035_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	9.9e-105	70.4
WP_024076147.1\|4404336_4404939_+	YIP1 family protein	NA	NA	NA	NA
WP_041161247.1\|4405066_4405561_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_024076149.1\|4405676_4406852_-	CoA transferase	NA	NA	NA	NA
WP_041160966.1\|4407009_4407402_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	5.9e-55	82.3
WP_024076151.1\|4407403_4407754_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	9.9e-38	68.3
WP_024076152.1\|4407753_4408032_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	5.3e-26	56.6
WP_024076153.1\|4408028_4408364_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.0e-44	77.5
WP_024076154.1\|4408360_4409362_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	2.2e-170	87.2
WP_024076155.1\|4409450_4410446_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_024076156.1\|4410552_4411947_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_024076157.1\|4411947_4413228_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.2e-98	53.6

DBSCAN-SWA_8

6383775 : 6448170

Tupanvirus(16.67%)

holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024077776.1\|6383775_6384276_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_024077777.1\|6384449_6385337_+	acyltransferase	NA	NA	NA	NA
WP_024077778.1\|6385333_6385906_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_024077779.1\|6386042_6386501_+	anti-sigma factor	NA	NA	NA	NA
WP_017847873.1\|6386576_6387776_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	1.1e-11	29.7
WP_024077780.1\|6387957_6388815_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_024077781.1\|6388957_6389590_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_024077782.1\|6389712_6392730_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_024077783.1\|6392726_6393029_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_010207084.1\|6393185_6394436_-	sarcosine oxidase subunit beta	NA	NA	NA	NA
WP_024077784.1\|6394458_6395712_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	2.5e-99	52.5
WP_041161037.1\|6395968_6396697_-	conjugal transfer protein TraX	NA	NA	NA	NA
WP_003176549.1\|6396787_6397828_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_024077786.1\|6397931_6399749_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_041161038.1\|6400026_6401472_+	cytosine permease	NA	NA	NA	NA
WP_024077788.1\|6401468_6402284_+	carbon-nitrogen hydrolase	NA	NA	NA	NA
WP_024077789.1\|6402287_6403388_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_024077790.1\|6403669_6404965_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_024077791.1\|6405777_6406272_+	type II secretion system protein	NA	NA	NA	NA
WP_024077792.1\|6406246_6406627_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_024077793.1\|6406613_6407120_+	hypothetical protein	NA	NA	NA	NA
WP_024077794.1\|6407194_6408691_+	lytic polysaccharide monooxygenase	V9XTU4	Choristoneura_murinana_nucleopolyhedrovirus	1.4e-24	35.6
WP_024077795.1\|6408984_6409416_+	type II secretion system major pseudopilin GspG	NA	NA	NA	NA
WP_024077796.1\|6409422_6409887_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_024077797.1\|6409883_6411068_+	type II secretion system F family protein	NA	NA	NA	NA
WP_024077798.1\|6411072_6412710_+	type II/IV secretion system protein	NA	NA	NA	NA
WP_041161039.1\|6412714_6413416_+	hypothetical protein	NA	NA	NA	NA
WP_024077800.1\|6413412_6413970_+	hypothetical protein	NA	NA	NA	NA
WP_024077801.1\|6413976_6414513_+	hypothetical protein	NA	NA	NA	NA
WP_024077802.1\|6414509_6415001_+	hypothetical protein	NA	NA	NA	NA
WP_024077803.1\|6415019_6416951_+	general secretion pathway protein GspD	NA	NA	NA	NA
WP_024077804.1\|6417306_6417528_-	EF-hand domain-containing protein	NA	NA	NA	NA
WP_024077805.1\|6418426_6419197_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_024077806.1\|6419207_6420428_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_024077807.1\|6420427_6422371_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_024077808.1\|6422542_6424603_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_024077809.1\|6424618_6425149_-	hypothetical protein	NA	NA	NA	NA
WP_024077810.1\|6425200_6426178_-	dipeptidase	NA	NA	NA	NA
WP_024077811.1\|6426397_6426799_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_024077812.1\|6426838_6427255_+	DUF3010 family protein	NA	NA	NA	NA
WP_024077813.1\|6427379_6428558_-	hypothetical protein	NA	NA	NA	NA
WP_024077814.1\|6428626_6429571_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_024077815.1\|6429764_6430709_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_024077816.1\|6430798_6431686_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_024077817.1\|6431814_6432780_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_024077818.1\|6432905_6433382_+	thioesterase family protein	NA	NA	NA	NA
WP_024077819.1\|6433391_6434552_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
WP_024077820.1\|6434834_6435098_+	hypothetical protein	NA	NA	NA	NA
WP_024077821.1\|6435212_6436316_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_024077822.1\|6436839_6438216_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_024077823.1\|6438632_6439580_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_041161040.1\|6439646_6440492_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_024077825.1\|6440488_6441667_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-25	37.1
WP_024077826.1\|6441817_6443809_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	1.4e-19	28.5
WP_024077827.1\|6444130_6444724_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_024077828.1\|6444834_6446307_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_024077829.1\|6446466_6448170_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	1.7e-50	30.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_023064

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection