CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007012	Pseudomonas sp. FGI182 chromosome, complete genome	3 crisprs	DEDDh,cas3,WYL,DinG,csa3,c2c9_V-U4	1	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007012_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007012_1

2864700-2864780

Orphan

Consensus_repeat	Method
GCGGGCTTGCCCGCTCCCACAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007012_1

>merge|NZ_CP007012|1|2864700-2864780|CRISPRCasFinder
GCGGGCTTGCCCGCTCCCACAGGTTCAGCACATGCTTCAGAAGCGGTGGAGCACCTGTGGGGGCTTGCCCGCTCCCACAGG

>NZ_CP007012|1|1|2864700-2864780|CRISPRCasFinder
GCGGGCTTGCCCGCTCCCACAGG	TTCAGCACATGCTTCAGAAGCGGTGGAGCACCTGT
GGGGGCTTGCCCGCTCCCACAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007012.1\|WP_025339105.1\|2875485_2875794_-\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|377315
NZ_CP007012.1\|WP_025339095.1\|2861861_2862647_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|226098
NZ_CP007012.1\|WP_025339098.1\|2864124_2864676_+\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|223811
NZ_CP007012.1\|WP_025339100.1\|2865322_2869105_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|214534
NZ_CP007012.1\|WP_025339102.1\|2870572_2872624_-\|phenylacetic-acid-degradation-bifunctional-protein-PaaZ	unknown	unknown	gnl\|CDD\|236931
NZ_CP007012.1\|WP_025339099.1\|2864842_2865241_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240025
NZ_CP007012.1\|WP_025339091.1\|2858608_2858833_+\|metallothionein	unknown	unknown	gnl\|CDD\|366903
NZ_CP007012.1\|WP_025339094.1\|2860662_2861865_-\|cardiolipin-synthase-ClsB	unknown	unknown	gnl\|CDD\|236888
NZ_CP007012.1\|WP_155951620.1\|2870245_2870416_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007012.1\|WP_025339097.1\|2863727_2864102_+\|low-affinity-iron-permease-family-protein	unknown	unknown	gnl\|CDD\|377225
NZ_CP007012.1\|WP_025339103.1\|2872653_2873886_-\|OprD-family-porin	unknown	unknown	gnl\|CDD\|335381
NZ_CP007012.1\|WP_025339096.1\|2862643_2863561_-\|DUF72-domain-containing-protein	unknown	unknown	gnl\|CDD\|376655
NZ_CP007012.1\|WP_025339106.1\|2876020_2877097_-\|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK	unknown	unknown	gnl\|CDD\|131215
NZ_CP007012.1\|WP_025339101.1\|2869759_2870017_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007012.1\|WP_003259459.1\|2869380_2869590_+\|general-stress-protein	unknown	unknown	gnl\|CDD\|226252
NZ_CP007012.1\|WP_025339089.1\|2855526_2858019_-\|DNA-ligase-D	unknown	unknown	gnl\|CDD\|235658
NZ_CP007012.1\|WP_025339104.1\|2873926_2875489_-\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|236495
NZ_CP007012.1\|WP_025339092.1\|2859252_2859681_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007012.1\|WP_025339093.1\|2859715_2860663_-\|UPF0104-family-protein	unknown	unknown	gnl\|CDD\|223469
NZ_CP007012.1\|WP_025339090.1\|2858147_2858612_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP007012.1\|WP_025339105.1\|2875485_2875794_-\|DUF485-domain-containing-protein	gnl\|CDD\|377315	pfam04341, DUF485, Protein of unknown function, DUF485. This family includes several putative integral membrane proteins.	3.49163e-35
NZ_CP007012.1\|WP_025339095.1\|2861861_2862647_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	1.2538e-64
NZ_CP007012.1\|WP_025339098.1\|2864124_2864676_+\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|223811	COG0740, ClpP, Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	6.39603e-34
NZ_CP007012.1\|WP_025339100.1\|2865322_2869105_-\|PAS-domain-containing-protein	gnl\|CDD\|214534	smart00138, MeTrc, Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.	2.1831e-95
NZ_CP007012.1\|WP_025339102.1\|2870572_2872624_-\|phenylacetic-acid-degradation-bifunctional-protein-PaaZ	gnl\|CDD\|236931	PRK11563, PRK11563, bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional.	0
NZ_CP007012.1\|WP_025339099.1\|2864842_2865241_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240025	cd04667, Nudix_Hydrolase_10, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	4.77369e-48
NZ_CP007012.1\|WP_025339091.1\|2858608_2858833_+\|metallothionein	gnl\|CDD\|366903	pfam02069, Metallothio_Pro, Prokaryotic metallothionein.	2.24115e-11
NZ_CP007012.1\|WP_025339094.1\|2860662_2861865_-\|cardiolipin-synthase-ClsB	gnl\|CDD\|236888	PRK11263, PRK11263, cardiolipin synthase ClsB.	0
NZ_CP007012.1\|WP_025339097.1\|2863727_2864102_+\|low-affinity-iron-permease-family-protein	gnl\|CDD\|377225	pfam04120, Iron_permease, Low affinity iron permease.	1.75179e-63
NZ_CP007012.1\|WP_025339096.1\|2862643_2863561_-\|DUF72-domain-containing-protein	gnl\|CDD\|376655	pfam01904, DUF72, Protein of unknown function DUF72. The function of this family is unknown.	5.59166e-86
NZ_CP007012.1\|WP_025339106.1\|2876020_2877097_-\|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK	gnl\|CDD\|131215	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other].	3.79228e-151
NZ_CP007012.1\|WP_003259459.1\|2869380_2869590_+\|general-stress-protein	gnl\|CDD\|226252	COG3729, GsiB, General stress protein [General function prediction only].	0.000786903
NZ_CP007012.1\|WP_025339089.1\|2855526_2858019_-\|DNA-ligase-D	gnl\|CDD\|235658	PRK05972, ligD, ATP-dependent DNA ligase; Reviewed.	0
NZ_CP007012.1\|WP_025339104.1\|2873926_2875489_-\|cation-acetate-symporter	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NZ_CP007012.1\|WP_025339103.1\|2872653_2873886_-\|OprD-family-porin	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	0
NZ_CP007012.1\|WP_025339093.1\|2859715_2860663_-\|UPF0104-family-protein	gnl\|CDD\|223469	COG0392, COG0392, Predicted integral membrane protein [Function unknown].	6.67251e-30

>NZ_CP007012.1|WP_025339098.1|2864124_2864676_+|ATP-dependent-Clp-protease-proteolytic-subunit
MARHIVHFTGPINSSTCGNLINTCSRALQQGAEVLQLNIATMGGECSYGFTLYNFLRALPVEVHTHNLGTVESMGNILFLAGDRRTACSYSKFLFHPFHWTLHGSVDHSRMAEYAMSLDYDLRLYAQIVAERTEGADEVLDVPRYLMAYPRILGPREALANGMIHAIDEMPIEAEACQWSVHA
>NZ_CP007012.1|WP_025339097.1|2863727_2864102_+|low-affinity-iron-permease-family-protein
MKFDRFAQWLANWAGRPLTFGIACLLILIWAVTGPLFGFNDTWQLVINTSTTIITFLMVFLIQNTQNRDNDELHIKIDELLRTTQQAHKALLDLEDMDPAELHALRKQYRQMAGQGDDAQKPKE
>NZ_CP007012.1|WP_025339096.1|2862643_2863561_-|DUF72-domain-containing-protein
MSDIRIGISGWRYGPWRKDFYPKGLPQDNELAFASRAVNSIEINGSFYSLQTPERYQGWHDETPPGFVFAVKAPRYITHVRRLKDIEEAVANFFASGPLLLGKKLGPFLWQFPPNMKFDEARFARFLELLPHSRKDARECAQGCAPRLKDNGSTDIKGNARLRHAVEIRNESFLCEAFIKLLRKHRVALVVADSAGKWPYVEDLTADFVYMRLHGDVELYSSGYTAQALRRWKQRIQHWSQGRQADDAQLVVPGPPPRRATRDVYCYFDNDQKVHAPYDARRLLQKLSLDHELMTEPGVVPEVTL
>NZ_CP007012.1|WP_025339095.1|2861861_2862647_-|endonuclease/exonuclease/phosphatase-family-protein
MNRTLPAPHCIIDKITAVRRLNVLTLNVHKGFTFFNRRFILPELREAVRATGADLVFLQEVHGSHQQHALRHPAWPDTPQYEFLADSMWPQFAYGRNAVYPHGDHGNALLSKFPISRFDNLDVSVQGNEQRGLLHCQLEVPGHDQVHAVCVHLGLREAHRQRQVKLLLDLLNSLPPKAPVIVAGDFNDWRLKADAVLCEHLVEAFGEHFGTPARSFPARLPLLRLDRIYLRNAMPGTAQVLSKYPWSHLSDHAPLASEIKL
>NZ_CP007012.1|WP_025339094.1|2860662_2861865_-|cardiolipin-synthase-ClsB
MNRPWVDGNSVQLLINGEQYYPRVFEAMSQAREEILLETFIIFDDKVGQQLQQVLIDAARRGVRVEVAVDGYGTADLPDSFIAAMTDAGVSFHAFDPQPRLVGMRTNLFRRLHRKIVVVDGERAFIGGINYSADHLGDFGPMAKQDYAVEVVGPVVAQVHAASKRLMSPVLQPPSAVRPLTEPAGTCTAVLVERDNKVRSTDIEAHYLQAFRSARQRIVVANAYFFPGYRLMRELRNASRRGVEVRLILQGQPDMRWVRALSRLLYNYLLRDGVAIHEYCQRPLHGKVALVDDEWATVGSSNLDPLSLSFNLEANLFIRDRAFNQQLNQHLQALAREQCKPVTLERMVRGYWWRAPLIFVCFHVIRHFPRIAGWFPAHRQHLRSVQPEAEAQVDYHEGKT
>NZ_CP007012.1|WP_025339093.1|2859715_2860663_-|UPF0104-family-protein
MARKHWQIWGKRLFTLAFLILIPALLYLLARNLDWNEVRQSLLAYKPGTLAIGLVLAGCSYLTFASYDLLARAYTGHHLPARQVLPVAFVCYAFNLNFTTWVGGVALRYRLYSRLGLDTATITRILTLGLLTNWMGYMLLAGTVFALRLVELPANWAVGASGLQLIGVVLLAIAAGYLLACGFAKKRTWRWRDHEVTLPSLRLALCQVVLGASNWALMALLIFWLLPGEAFYPSILGILLISCVAGVVAHIPAGLGVLETVFLALLHGQLAQGTLVAALLGYRTLYYLVPLLLAVLTYLILEKRAKAMRRRDKPA
>NZ_CP007012.1|WP_025339092.1|2859252_2859681_-|hypothetical-protein
MRGAVLKPMLILMVASLVSGQALAEACNVLTRSSSEAVTPVERHSCYSYSNLPAEAINWSCSNESKDMLNSEKHKVARCADGSVGSCIAPLTQEALANPKAAGGDKPALPKDARVITYYYDTPSLGQARTDCERSNGIWQTH
>NZ_CP007012.1|WP_025339091.1|2858608_2858833_+|metallothionein
MNEVRCACAHCSCTVDANALQLEGKVYCCEACASGHRNGEPCRMPDCHCGEKTGESAVDNALDETFPASDPISP
>NZ_CP007012.1|WP_025339090.1|2858147_2858612_+|hypothetical-protein
MARADEPKPYTPTEIDDTEDRMGSVHELDFDERLDEREGRVGDERPAADVAREFPPRRVAESGMTGGEALSDSLHEDNVTYDDLSPDTLLDETGARDPHEPGRSGGPADKTLRRVEANEIGGGIGLDEAELARSAPLDGEPWADDVIDDEESKP
>NZ_CP007012.1|WP_025339089.1|2855526_2858019_-|DNA-ligase-D
MAKPLQEYARKRDFNATPEPSGKRSRGKRAHALQFCIQKHDASHLHYDFRLELDGTLKSWAIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAREAYAKGKLRFRLQGEKLTGVWNLFRTHLAGKKEQWMLVKSHDSQARSEADYSIVDAQPDSVLSDRTLVPRKPAAKKAAAPRRKTASKGRKVPLPAQLQPQLATLVDSPPSGDWRYEVKFDGYRILARIDGDDVRLFTRNGHDWSGKMPRQVAALRALGLDSAWLDGEVVVAGEDGAADFQALQNAFDTEHDEHITYYLFDLPFLGGQDLRHLPLQDRRNTLQQLLEHNESDVLKYSADFDQPVESLLDSACRLQLEGLIGKRVDSPYSGRRSPDWIKLKCKQRQEFVIAGYTDPKGSRSGFGALLLALHDNDSGELRYAGKVGTGFSATTLASIHARLKPLEIARPALPNPPTGAEARGVHWLKPQLLAEVAYAQMTRDGIVRHSVFHGLRDDKPATAIDLERSMPAKTLPKRKQAKAPEALGELRLTHPERVVDATSGVTKREVAEYYAAVSQWILPQLEHRPVALVRAPDGLAGELFFQKNAGQLHLPNVLSYDKAEAGQAAMVVNRADTLLGAVQMNMIELHTWNATDKDFDKPDRFVLDLDPDPALPWKAMLEATQLALTLLDELGLKVFLKTSGGKGMHLVVPLTRRASWDEVKAFSHGIVDYLARLFPDRLSAVSGPKNRIGRIFIDYLRNGKGATTACAYTLRAREGLPVSVPIWREELPQLKGANQWNIGNVLERLGEVDDPWAEYGKTRQSITVGMRKQLGLA
>NZ_CP007012.1|WP_025339099.1|2864842_2865241_-|NUDIX-domain-containing-protein
MKPVKHRATIICRHGKQTHKWLWVRKPNAAWTLPGGKIEPGETPVQAAERELLEETGLQAESLTLLMRHETAERMHYVFEAEFADAPHPKAQHEIVDCRFAHPDQVPMLKDEIKLLIRSLLACDRATAASVR
>NZ_CP007012.1|WP_025339100.1|2865322_2869105_-|PAS-domain-containing-protein
MKSSPKQPASPQNPALSPSHLDFPVVGIGASAGGLEAICTLFRQMPSDCGMAFVVVLHLSPDHQSVADRIIQETTQMPVRQVTEPVPIERNHIYVISPANRLSTNDGYLRVTPANRRRGDHVAIDLFFRDLADVHKDHAFCVVLSGTGADGAVGLSRIKEQGGVTLAQNPDDAQYDSMPRAAIETGMVDLVLPAAEMPQKLLELWRNARQVRLPEIEDDTLPPALGTRAGDAQASEPMLEEILLQLRSNTGHDFQHYKRATVLRRIERRLHVTGQADLAAYLHYLEQHPAESRALLADMLIGVTNFFRDREAFEALERHVLPQLVCERDPAEGADEIRVWSAGCSTGEEAYSLAMLVCEQLALEQRSHKVQVFATDLDERAIGIARSGSYPEAIVTDVPPSRLRQFFLKEDQHYRVRKEVREKVLFARHNLLSDPPFSQIDLIVCRNLLIYLDREVQRDILQMFHFALRPGGYLFLGSSESADVASELFTPVDKRNRIFRALDASNTGRRSGRQLPGTSAASLPQGALAKAKPGRKPSFADLHYRALARRMPPSLIVDLDGNILHMSEGVGRFLQVAGGEPSRSLLNLVLPPLRLALRSTLFQARQGTEAVTSRPVDLAETMGKLQVEITVQPYKDDLSASDCLLVVFEERAPDPSLPLPGVIRQTDSMVLHNLERELQRTRLQLQETIEQSEVSSEELTASNEEMQAINEELRSASEELETSKEELQSINEELLTVNYELKNKVEETDKVNDYLSNLIACTEIATVFVDRNLHIRWFTPRATDLFNMLPVDTGRSLLDITHRLDYPALADDARAVAQGEAIIEREIGGQGDHWYLARLLPYRSSEQKIDGTVLTFIDISSSHAAEERVRLGEERLSKQLAESQSTSHMKDEFFAVMSHELKHPLNLIQLNAEILRRLPSLRNIIAASKAVGTICDAVTSQARIIDDLLDVARIRTGKLKLKTEPVDLLALLQGIHDVVVSEQHPCPVRLELPADTLPVMIEGDVTRLEQIIWNLLNNALKFSPAGNEIRLVLSHDEDHARLQVIDHGVGLSHDSLEHIFDLFSQATSQQASHSREGLGIGLSLVRQLVEAHGGTVRATSAGLGLGCTFTVTLPLCETQPQQRTQGSEPPSEGRLNGIRVLLVDDSVEVLAVMQELLEMESATVNAFSKPREALDAAAGEEYDIILSDIGMPVMDGHALIKALRGYVHLRHTPAIALTGYGASADQYKSRQSGFDRHLSKPVGYDELVEAIEALSGSVPY
>NZ_CP007012.1|WP_003259459.1|2869380_2869590_+|general-stress-protein
MAQDQERTSQRGGTKETNPGNFANDRERASRAGHKGGQASGGNFANDRQRASEAGRKGGQNSHGGGRQQ
>NZ_CP007012.1|WP_025339101.1|2869759_2870017_+|hypothetical-protein
MPSPQLYIIDYQLHGQPRSFIIRLETLDNAEAWHWASCDAGIGIIPKFGREKIRKVSRPMAERYGITAVSWRVSGGKPNQSAATM
>NZ_CP007012.1|WP_155951620.1|2870245_2870416_-|hypothetical-protein
MKDMLGMGGGSAQDDWPELEPDRRNDRADDPDADPNVTDDEENRPGVPASDPESGA
>NZ_CP007012.1|WP_025339102.1|2870572_2872624_-|phenylacetic-acid-degradation-bifunctional-protein-PaaZ
MSAAPTLQSFIAGRWLGQHGAQALRSALDGHVLAYSHEERPDFAEAVDFARARGLAALMAMDFQQRAARLKALALYLAERKEQLYALSHHSGATRADSWIDIEGGNATLFSYAGIGSRELPSGNLVHEGPAIPLGKQGHFAGSHILVPRAGVAVHINAFNFPIWGMLEKFAPTFLAGMPCIVKPATSTSYLTEAVVRLMNASGLLPEGSLQLVIGSTGDLLDRLQGQDVVTFTGSADTAAKLRVTPNLVRNSVPFTAEADSLNCAILGPDVTPDSEEFDLYIKEVVREMTTKAGQKCTAIRRAIVPARHIDAVATRLRERLAKVVVGDPSLEGVRMGALASHDQQHDVAERVRSLLQSCDQLFGASDGFAPRGEGVAEGAFFAPTLLQARDPHAEGGAHDIEAFGPVSTLMAYDDLDEALALAARGKGSLVATLVTADRSVAAKAIPVAAAWHGRLLVLDSEAAKESTGHGSPLPQLKHGGPGRAGGGEELGGLRAVKHYLQRAAVQGSPSMLTAVTGEYVRGGEVIETEVHPFRRYFEQLRIGESLLTHRRTVTEADLVNFGCLSGDHFYMHFDEIAAKQSQFGKRIAHGYFVLSAAAGLFVSPGAGPVLANYGLDTLRFINPVGIGDTIQARLTCKRKIDQGKTSPLGQPQGVVAWDVEVTNQLGELVASYDILTLVLKQP
>NZ_CP007012.1|WP_025339103.1|2872653_2873886_-|OprD-family-porin
MNRTHFISAAWLATLALPMPAMADFIGDSHARLELRNHYLNRDFRQSNAPQAKAEEWGQGFTAKLESGFTEGPVGFGVDAMGQLGIKLDSSRDRRNTGLLPFGPNSHEPVDDYSELGLTGKVRMAKSTLRLGTLQPILPVVVYNDTRLLASTFQGGLLTSQDLPGLTFNAGRLTKANLRDSSGRDDIGYGAASSDHLDFGGGSYAITPQTSVSYYYAKLEDIYRQQFVGLIDTRPLGEGLSLRTDLRYFDSRNDGAERAGNIDNRNFNAMVTLGVRAHKFTAAWQQMSGDSAFPFVNGGDPFTVNLVTYNTFTRAGLDSWQVRYDYDFVAMGIPGLSFMTRYTDGRHAETATVSNGRERERDTDITYVIQSGPFKDVSLRWRNVTFRSGNGLTNAVDENRLIIGYTVALW
>NZ_CP007012.1|WP_025339104.1|2873926_2875489_-|cation-acetate-symporter
MNWTAISMFMVFVCFTLLVTRWAAMRTRSASDFYTAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLLYALGVLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQTPVRLTSAFGTLVVALMYLVAQMVGAGKLIELLFGISYLYAVMLVGVLMVAYVTFGGMLATTWVQIIKAVMLLSGTSFMAFMVLKHFGFSTEAMFASAVAVHAKGQAIMAPGGLLSNPVDAISLGLGMMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFIGYFYLLLIVIGFGAIVMVGTEPSYRDATGAIIGGGNMVAVHLAQAVGGNLFLGFISAVAFATILAVVAGLALSGASAVSHDLYACVVRQGKASEQEEMRVSRIATLLIGLLAVILGLMFESQNIAFLSGLVLAVAASVNFPVLLLSMFWKGLTTRGAVCGSMAGLVSAVLLVVLGPAVWVNVLHHEMALFPYSNPALFSMSLAFLGAWVFSVTDSSERASQERGRYLAQFIRSMTGIGAAGASKH
>NZ_CP007012.1|WP_025339105.1|2875485_2875794_-|DUF485-domain-containing-protein
MTPERIESIANHPDFQHLVQRKRRLNGSLTLAMLVIYYGFVLLVAFSPSTLGQSLSGGVTTVGMLVGVLMVLLSFALTGIYVHRANNVLDPLNDKVKQEYAQ
>NZ_CP007012.1|WP_025339106.1|2876020_2877097_-|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK
MSQFHSLTIKQVRNETRDAVSIAFDVPEHLQAQFRFTQGQYLVMRTQLDNEEVRRSYSICSAVQDGELRVAVKRVPGGRFSAFANDVLKAGQQLEVMPPSGSFFVPLEPARQGNYLGVAAGSGITPILSIIATTLASEPHSRFTLLYGNRSSSGALFRDKLEDLKNRYLDRLNLIFVFSREQQDVDLYNGRIDADKCGQLFSRWMDVANLDAAFICGPQAMTETVRDSLRANGLAKERIHFELFAAAGSEARREAREAARQVDSALSHITVISDGRALTFDLPRNTQNVLDAGNAIGAELPYSCKAGVCSTCKCRVIEGEVEMDSNHALEDYEVAAGYVLSCQTYPVSDKVVLDFDQL

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Crispr_ID: NZ_CP007012_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007012_2

3953452-3953542

Orphan

Consensus_repeat	Method
CGAGCGCCGCCCGCGCGGCGCTTCGCGGG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP007012_2

>merge|NZ_CP007012|2|3953452-3953542|CRISPRCasFinder
CGAGCGCCGCCCGCGCGGCGCTTCGCGGGTGTTCGTCTTGACACTTTCTGCGCCTGTGAGACCGAGCGCCGCCCGCGCGGCGCTTCGCGGG

>NZ_CP007012|2|2|3953452-3953542|CRISPRCasFinder
CGAGCGCCGCCCGCGCGGCGCTTCGCGGG	TGTTCGTCTTGACACTTTCTGCGCCTGTGAGAC
CGAGCGCCGCCCGCGCGGCGCTTCGCGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007012.1\|WP_003261021.1\|3942149_3942596_-\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|178927
NZ_CP007012.1\|WP_009686399.1\|3949720_3950794_+\|microcin-C-ABC-transporter-permease-YejB	unknown	unknown	gnl\|CDD\|226642
NZ_CP007012.1\|WP_025339939.1\|3947883_3949719_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173862
NZ_CP007012.1\|WP_025339935.1\|3942609_3943383_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NZ_CP007012.1\|WP_025339937.1\|3944348_3945779_+\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|182727
NZ_CP007012.1\|WP_025339940.1\|3951816_3953430_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226641
NZ_CP007012.1\|WP_025339947.1\|3960688_3963889_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007012.1\|WP_025339941.1\|3954136_3954379_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007012.1\|WP_025339945.1\|3958704_3959610_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP007012.1\|WP_025339951.1\|3968303_3968855_-\|potassium-transporting-ATPase-subunit-KdpC	unknown	unknown	gnl\|CDD\|234724
NZ_CP007012.1\|WP_025339934.1\|3941339_3942098_-\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235574
NZ_CP007012.1\|WP_025339950.1\|3965486_3968141_-\|sensor-histidine-kinase-KdpD	unknown	unknown	gnl\|CDD\|225115
NZ_CP007012.1\|WP_025339936.1\|3943468_3944248_+\|hydroxyacylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|274569
NZ_CP007012.1\|WP_025339946.1\|3959732_3960692_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007012.1\|WP_025339949.1\|3964794_3965490_-\|response-regulator	unknown	unknown	gnl\|CDD\|182522
NZ_CP007012.1\|WP_025339938.1\|3946114_3947887_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173862
NZ_CP007012.1\|WP_025339942.1\|3954535_3954799_+\|DUF3077-domain-containing-protein	unknown	unknown	gnl\|CDD\|371447
NZ_CP007012.1\|WP_025339944.1\|3955699_3958630_+\|aminotransferase	unknown	unknown	gnl\|CDD\|235716
NZ_CP007012.1\|WP_081742352.1\|3964185_3964641_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007012.1\|WP_013973404.1\|3950795_3951815_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226690

Protein	Function_ID	Function_description	E-value
NZ_CP007012.1\|WP_003261021.1\|3942149_3942596_-\|ribonuclease-HI	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	9.61227e-100
NZ_CP007012.1\|WP_009686399.1\|3949720_3950794_+\|microcin-C-ABC-transporter-permease-YejB	gnl\|CDD\|226642	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NZ_CP007012.1\|WP_025339939.1\|3947883_3949719_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173862	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP007012.1\|WP_025339935.1\|3942609_3943383_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	5.31889e-06
NZ_CP007012.1\|WP_025339937.1\|3944348_3945779_+\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|182727	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional.	1.18982e-128
NZ_CP007012.1\|WP_025339940.1\|3951816_3953430_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226641	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only].	0
NZ_CP007012.1\|WP_025339945.1\|3958704_3959610_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.75499e-33
NZ_CP007012.1\|WP_025339934.1\|3941339_3942098_-\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|235574	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional.	1.38398e-146
NZ_CP007012.1\|WP_025339950.1\|3965486_3968141_-\|sensor-histidine-kinase-KdpD	gnl\|CDD\|225115	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms].	0
NZ_CP007012.1\|WP_025339936.1\|3943468_3944248_+\|hydroxyacylglutathione-hydrolase	gnl\|CDD\|274569	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753). [Cellular processes, Detoxification].	6.30203e-140
NZ_CP007012.1\|WP_025339949.1\|3964794_3965490_-\|response-regulator	gnl\|CDD\|182522	PRK10529, PRK10529, DNA-binding transcriptional activator KdpE; Provisional.	8.89883e-87
NZ_CP007012.1\|WP_025339938.1\|3946114_3947887_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173862	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP007012.1\|WP_025339942.1\|3954535_3954799_+\|DUF3077-domain-containing-protein	gnl\|CDD\|371447	pfam11275, DUF3077, Protein of unknown function (DUF3077). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	8.07406e-17
NZ_CP007012.1\|WP_025339944.1\|3955699_3958630_+\|aminotransferase	gnl\|CDD\|235716	PRK06149, PRK06149, aminotransferase.	0
NZ_CP007012.1\|WP_025339951.1\|3968303_3968855_-\|potassium-transporting-ATPase-subunit-KdpC	gnl\|CDD\|234724	PRK00315, PRK00315, potassium-transporting ATPase subunit KdpC.	9.46905e-91
NZ_CP007012.1\|WP_013973404.1\|3950795_3951815_+\|ABC-transporter-permease	gnl\|CDD\|226690	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only].	0

>NZ_CP007012.1|WP_025339940.1|3951816_3953430_+|ABC-transporter-ATP-binding-protein
MSEQNLIEVRDLAVEFVTGDQAHRVVNGISFDIRKGETLALVGESGSGKSVTAHSLLRLLPYPLARHPSGSIRYEGKDLLQQNEKTMQRIRGNRIAMIFQEPMTSLNPLHCIEKQINEILLLHKGLTGKEATARTLELLEMVGIPEPRKRLKALPHELSGGQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILELLKELQARLGMALLLISHDLNLVRRIAHRVCVMQHGQIVEQAECARLFSAPQHHYTQMLINAEPSGLPAHNPVGAPLLEVDDLKVWFPIKKGLLRRTVDHVKAVDGINFSLPQGQTLGIVGESGSGKSTLGLAILRLISSQGGIRFHGQDLAGLNQKAVRPLRREMQVVFQDPFGSLSPRMCVEDIVGEGLRIHRIGTAQEQEAAIIAALEEVGLDPRTRHRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRNLQQKYNLTYLFISHDLAVVKALSHQLMVIKHGHVVEQGDAQAIFHAPQHPYTRQLLEAAFLEVEAGSP
>NZ_CP007012.1|WP_013973404.1|3950795_3951815_+|ABC-transporter-permease
MALSPLNRRRFERFKANRRGWWSLWLFLILFGLSLGAELIANDKPIAVRYDGEWYFPAFKRYPETTFGGEFPLEANYKSPYIRELLEKKDSFVLWAPIPFSYQSINYDLRVPAPAPPSADNWLGTDDQGRDVLARVIYGFRISVLFALTLTLLSSIVGVIAGALQGFYGGWVDLAGQRFLEVWSGLPVLYLLIILASFVQPNFWWLLGIMLLFSWMSLVDVVRAEFLRGRNLEYVRAARALGMRNGAIMYRHILPNAMISTMTFMPFILTGAIGTLTALDFLGFGLPPGAPSLGELVAQGKSNLQAPWLGISAFAVLALMLSLLVFIGESARDAFDPRK
>NZ_CP007012.1|WP_009686399.1|3949720_3950794_+|microcin-C-ABC-transporter-permease-YejB
MLAYILRRLLLIIPTLFGILIINFIIVQAAPGGPVEQMIAKLEGFEGATSRIAGGGAEVSVAGSNYRGAQGLDPALIAEIERMYGFDKSPPERLWIMIKNYARLDFGDSFFRDAKVIDLIIEKMPVSISLGLWSTLIMYLVSIPLGIAKAVRHGSHFDVWTSSAIIVGYAIPAFLFAILLIVLFAGGSYFDWFPLRGLTSNNFDELSTTGKVLDYFWHLVLPITALVIGNFATMTLLTKNSFLDEINKQYVVTAKAKGLSRPRVLYGHVFRNAMLLVIAGFPSAFIGIFFTGSLLIEVIFSLDGLGLMSFEAAINRDYPVVFGTLFIFTLLGLVVKLIGDLTYTLVDPRIDFASREH
>NZ_CP007012.1|WP_025339939.1|3947883_3949719_+|ABC-transporter-substrate-binding-protein
MTPTHRLRRLAGSLLLACLSLPALAAPQHALTLYDEPPKYPADFKHFAYVNPDAPKGGTFRQSSFGGFDSLNPFINKGVPAENISSIYDTLMRQSQDEPFTEYGLVAGKIEKAPDNSWVRFYLRPEARFHDGHPMRADDVVFTFNALIKDGAPLYRQYYADVAEVVAEDPLTVLFTFKHKNNRELPLILGQLPVLPKHWYESRDFNRGNLEIPLGSGPYKVAEVKAGRSVRYERVKDYWAKDLPINRGFYNFDVMTFDSYRDTTVALEALKAGAFDYALEVSAKNWATAYDVPAVRDGRLIKEELPNGNPTGMQGFIFNIRRPVFQDVRVRQALSLLLDYEWTNKQLFNGAYTRTGSYFDNSEMAARGLPGPSELKILEPLRGKVPEQVFSEAFHNPVSDGSGMIREQQRQAYKLLQEAGWKIVDDKMVDAQGKPVSIEFLLAQTEFERILLPFKRNLADLGIDLNIRRVDVSQYITRLRSRDYDMIVGGYPQSNSPGNEQREFWSSAAADNPGSRNFIGLRDPAIDQLVEQLINADSRQSLIDHCRALDRVLLWGYYVIPNWHIKTWRVAYWNHIGHPDVSPKYDIGIDTWWIKPGVTPAVSETTADEAE
>NZ_CP007012.1|WP_025339938.1|3946114_3947887_+|ABC-transporter-substrate-binding-protein
MVSESHGYAQFGTLKYPATFTHFDWVNPQAPKGGTLRAMAFGTFDTLNPYTFKGSSPITTPNFQQYGISELNEPLMVGTGQYDPSGDEPTSSYGLIARSVEYSEDRSWVVFNLRPEAHWHDGKPITSADVAFSYRTLLKDGHPIYRTNLQEVQRVDILGPLRIRFVFKRAGNPLLILRLGEMPVLPKHYWQKRDFKATTFEPPLGSGPYRITQVQPGRRLVFERVKNYWGKDLAVNRGKYNFNRVEYEFYRDATVAFEAFKAGEFDIYIEHQAKNWANGYNFPAVRRGEVIKAQIPHRIPTQTQGLFMNSRRATFSDPRVRQALGLMLDFEWTNRALFSGAYRRSTSYYPNSESAATGLPTGKEWLLLAPFRDQLPAALFSEPYKVSQTEGRGINRQTLRQALGLLAEAGWKLNGQRLVDSKGQQLRMELLLVNPNLERILQPYVENLASIGIDARLRTVDRAQYKQRLDQFDFDMILMTLNQTLSPGLEQWLYFHSSQATTKGSKNYAGVKDPVVDHLLDTLLAARTRDDQVAAARALDRVLSWQYYMIPNWYLDNHRLAYRNRFAFVTTPPYTLGLNSWWIKTSEKAQ
>NZ_CP007012.1|WP_025339937.1|3944348_3945779_+|lytic-transglycosylase-domain-containing-protein
MSSRSRRTSHSVALTRLAQISALALAATLVGCQSTRQLDESDSVRAHNYQARIKHKPSPLLVKPAEQAPQDVWERMRQGFALQDNIDVNPRIEQQRLWFASNPSYIESAGERGSLYLHYIVERLEERDMPLELALLPAIESAYNPMAYSRAHAAGMWQFIPSTGRHFNLRQTNFYDGRRDVTASTNAALDYLSRLHDMFNGDWLLALAAYNAGEGTVSRAIERNERLGLPTDYWNLPLPQETRDYVPKLLALSQVVLTPEAYGVNLNPIANEPYFEAVAINDRLDLSRVAAFANIDEDELIQLNPAFKKRMTVDGPQQLLVPTAKAQLLSDSLSNLKPEQLVSLQPNKAVFARAVAEAKAPVAARSYRVKRGDNLGAIAKANRVSVKDIKRWNRLSGNSVRAGQVLALRGGSAPSAAGNRVAASGQRSTQYKVRKGDSLYLVAKRFNVEMKHLKRWNPRSGHALKPGQTLTVYLSH
>NZ_CP007012.1|WP_025339936.1|3943468_3944248_+|hydroxyacylglutathione-hydrolase
MIQIDALPAFSDNYIWLLQDTAKRRCAVVDPGDAGPVERWLSANPGWVLSDILVTHHHNDHVGGVERLKQLTGARVCGPAHERIPCRDLALDEGDQVTVLGVTFQVLAVPGHTLGHIALFSDQPATPVLFSGDTLFAAGCGRMFEGTPEQMQPALARLAALPEQTEVYCAHEYTLSNLRFAKAVEPDNPHVQQRFEDVTRLRADNRITLPSTIGLERLTNPFLRTSETLVKQKADEWKGHSNPSHVAVFAALRSWKDTF
>NZ_CP007012.1|WP_025339935.1|3942609_3943383_-|methyltransferase-domain-containing-protein
MTDQAFAQADPDWVKLISLAREWFNGPLGQLMLKEEEKLLEEELGRFFGGYLVHYGPCAEPPPSAPQVQRNVRLGAPLPGVEIVCEEQAWPLSEHAADVVVLQHGLDFCLSPHGLLREAASAVRPGGHLLIVGINPWSSWGMRHFFSHGALRKARCISPSRVGDWLNLLGFALEKRRFGCYRPPLASPAWQQRLAGWERVAGGWQSSGGGVYLLVARKMVVGLRPLRQERREPMGKLLPLPLAKVNRTAANPDTEKH
>NZ_CP007012.1|WP_003261021.1|3942149_3942596_-|ribonuclease-HI
MSESVEMFTDGACKGNPGPGGWGVLMIYKGVEKELWGGERETTNNRMELMAAIQGLMALKRECEVVLTTDSQYVMKGINEWMTNWKKRGWKTAAKEPVKNADLWQQLDEQVNRHKVTWKWVRGHIGHPGNERADQLANRGVDEVRAKR
>NZ_CP007012.1|WP_025339934.1|3941339_3942098_-|DNA-polymerase-III-subunit-epsilon
MEQQQDKRFVILDTETTGMPVSEGHRIIEIGCVEVIGRRLTGRHFHVYLQPDRESDEGAINVHGITDAFLVGKPRFGDVAEEFFEFIQGATLVIHNAAFDVGFINNEFALLGQQDRADISQHCTILDTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGGQTSLSLAGHGAEAGDEGTGAGGSEIRRITGRVPGRVIMASAEELEAHAERLAAIAKSAGGPSMWQALTETPAG
>NZ_CP007012.1|WP_025339941.1|3954136_3954379_+|hypothetical-protein
MLNIVPDPPHTPHSLEDTLIQATDYALCAATVVHQALLLQPKSPASILMMTSMHELEALRTLLESALVQVQMPAEPRTLH
>NZ_CP007012.1|WP_025339942.1|3954535_3954799_+|DUF3077-domain-containing-protein
MTKEDTQFTVGKTTFYQGEHGTHPLFRIEPGIPCRDAREQSSELMGYVRELTITGLMDEKPMMIWAAHYLSAMAKALMDDAELGMKH
>NZ_CP007012.1|WP_025339944.1|3955699_3958630_+|aminotransferase
MSSPQHQPASPALTTLIQRSGLPSPALGEAQAHAVLQTHYGIAGNLSALGSQQDLNFRVDAPQGRFVLKACHGSYAQLELEAQHAALAYLREQGLPVPAVRPASDGQMLLALEIDGQPLRMRLLDYIDGQPLTRLKHMEPRLMAELGGLCARLDKALATFDHPGLTRTLQWDPQHAQALIQHLLPVLGNAEQRARIEQATQLAAEHLAPLVDQLPSQAVHLDITDDNAVWARDGERQWQLQGVIDFGDLLRTWRIADLSVTCAALLHHAEGDPLRILPAVRAYQALNPLSEAELRALWPLVLNRAAVLVLSSEQQLTVDPGNQYTRDNIAHEWEIFDTATAVPFALMEAAILQAAGLQPATPDLSGCVPLLPELDGQVVTRVDLGVLSVHCEAGNWEQPGFDQHLLTTQPAPACSLHGQYRLSQTHIDRPEEPATCALGVELHVPNGSLVQAPDAGTWQRHGDGRGCLRSAHWALWLQGLEDAPADGQAVEKGQSLGSSCGFLSVQLCLDSGIQPPFFATPSQAAAWLALCPSPAALLGFGCNAEPLPDPQALLARRDASFARSQKHYYAQPPHIERGWRNYLIDMQGRSYLDMLNNVAVLGHGHPRMVAESARQWSLLNTNSRFHYAAITEFSERLLELAPEGFDRVFMVNSGTEANDLAIRLAWAYSGGRDLLSVLEAYHGWSVATDAISTSIADNPQALETRPDWVHPVEAPNTFRGRFRGADSATDYLRDVDAKLADLDARGRQLAGIICEPVYGNAGGISLPAGYLREAYAKVRARGGVCIADEVQVGYGRLGEYFWGFEEQGVVPDIITMAKGMGNGQPLGVVITRREIAEALEAEGYFFSSAGGSPVSCRIGMAVLDVMQKEGLWDNARDTGRYFKARLQALVDKYPLAGAAHGSGFYLGLELVRDRATLEPATEETMALCNRLRDLGIFMQPTGDYLNILKIKPPMCTTRASVDYFVDSIDRVLSEDL
>NZ_CP007012.1|WP_025339945.1|3958704_3959610_+|LysR-family-transcriptional-regulator
MAFTSDSLAIFLAVLEAGSFSAAARKLGRVPSAVSMAIAQLEAELDLVLFDRATRKALPTSAALALEPQARQVICQLNLLDAQALQLHKGLEKRLTIAMAPELQTGRWSQPLETLAQEFPSLEIEVRSATQAEAIRLLHDGSVQLALVFERPGIDERESFLEAGSQLLVAVASPRHPAGQNNGMPLPEEAFAEQRQIIVASGKATGSDPRMVLSRRIWLTDSYLATLDLVQSGLGWAYLPQPLVEPLIASGALAEVRFDNMASRLRLWVDIIWVKSRPLGLGARRYLDVMRQCFETESPRS
>NZ_CP007012.1|WP_025339946.1|3959732_3960692_+|hypothetical-protein
MSSQSAQGYVQSVDHFANQQRQPEEALYLLLDPFAGCPPEHPLAIAALSEALGSDAVTRVDCSGLVQDPECWPALVRLAKPGDAPTALAPLSATCAARESAATWHYVCGWLISDQPADLIAQHISQQCLVLHQPEPHGITAWFEPVRLALLRATLKNAGEVLGPVRSWLHPDGCGSREVFERDPMAGELAVPEAVRATQHVAPQIIQLLGAWHRLSAVQHPHAPWHFAGSSGLPENAPTHAMNLILKAFKQGLRDRADIQCMSLHMLMIHPLLLQHPTIQHEVEKAAAGEQRLADRFASYNDCTWSHIVAGLPKARSYS
>NZ_CP007012.1|WP_025339947.1|3960688_3963889_+|hypothetical-protein
MSISKAIHIAMQEEIPNTYGTCNACERSGLPILLLREAYAPRPDTGRPYRLADDSEIIFHPMHTDQLRLLRQGYVYVLLDQEIWQAYEVAAEGTLQRFPVSQMPFGPPRSLPKACATEGHDVIASFINIDTLLYRKAWIAFANDPWPRAVLDRYRQGIADSDPDTLARFVEVDLNTARNDPASLGIAMTDSFRFGLEQVLEFSTFSSARFTSAHGFYSRLGRWHETRTHVRNVIQQEQLPNGLLALTLPDPVGMVMELNAQRTGWVQALQEWRAQPQRHFEYFTSQALLGIRELHAAMAAVQGAEDAQREARQVEQWNDSPIAAKAYLPPVDIDAQTERNTARKQQDARERLEERYDESARAAFQADYDRELKNWQSMIDQVGDLYARHYAKRAFQQIGYYDYDATSPVSVEYFIQMMAACLAGGPTETLPQEGQPLGITQHIWQQLLEDDRSLLYQALLAKNQKLMQQVASALSGDDFGKVYDIIKGIAGTADGQLLMIKPIQDAVGQLLAATNSAGNALSQHLSERTKTLIGHVHRSAFALFAGQQVTPLRVSLTVGEYMSLLNEALEARTDAFLQQVDKQFRDPLGRKVRAMVLSGAINIAAAGNRKQMIEVMLWTLESAESLQARLVQLREGAAGGVGALVRNVVIGAGTLRAQVTGGLKISSTAAQSVASDAMRSLRDAAASSGSVGLLFALGSMWFHQDSLGKNYRALQETHQDNPEALAAIWSSSLGLLGASVEAAGLAVAVIRPKIPWPGTVTTTSLGTGIARYGAGIAGIAGMMDGAQYLFASLRTHKRGDLTSADGYRTAGIMAGASAIAGVLGAFGPATLFGPIGIAIILGLAAYAIASEAKQNESSPTELWARQSRWGLSEDNRLWTEAKHLDTAIGALNAAAIGVQAEISIRTQLTNHTNMQTSEPKGMIIGNEPAIPAEYTLNYYFLLPNYAEGTSRHEWHLSIHRTGAQREIITVSGDSTPTNQLQISLPKGKGVFGHIDNPQPLVRFNSKNSTLTIQGVLPLLVDHHINAIEFSLRYWPDKQDELGHAHVTITENYMHSLEPLTKWPAPY
>NZ_CP007012.1|WP_081742352.1|3964185_3964641_+|hypothetical-protein
MDISPPRDEPIRFNRARQRIYAYNFKRQWWNPFDKGKVVPVSYDWSQVRAERWSQTGALPNGGVIFKWGVMLSIVAPGTNNVIDRFHLSTMGADQHAWAYICTYMQEGPSALPPPGEPKDHNDVLWCEFALRLAPRVVWPAEMDLESRTAP
>NZ_CP007012.1|WP_025339949.1|3964794_3965490_-|response-regulator
MSQSATLLVIDDEPQIRKFLRISLASQGYKVLEAATGTEGLAQAALGKPDLVVLDLGLPDMDGQQVLRDLREWSAVPVLVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQAGGSEVAASFGPLMVDFAFRRVTLDGVEVALTRKEYALLAQLAGHPGRVITQQQLLKDIWGPTHVDDTHYLRIVVGHLRQKLGDDPTAPRFIITEPGVGYRLVAPTM
>NZ_CP007012.1|WP_025339950.1|3965486_3968141_-|sensor-histidine-kinase-KdpD
MSDSARADALLATLPRSGRGRLKVFLGAAPGVGKTFAMLQAAHAQQRQGVQVLAGVVETHGRAETEVLLAGLQQQPLLRSQYRGVTLEEMDLDGLLKAAPALVLVDELAHTNAPGSRHAKRWQDVQELLAAGIDVYTTVNVQHLESLNDKVRDITGVQVRETLPDWVLQEAFELVLIDLPPRELLERLREGKVYVPEQARAAIDAFFSQTNLTALRELAMQTAAAQVDADLAHGYRQRGQEAPALRGRLLVGVDGDDQAERLVRHASRVAQRRHLPWSLVHVDNGRLRDETARQRLQAAQQLAERLGGEVVLLRAGEVVRTLIQHAAERRASLVLVGQSRDRLRRRLFGAGVAARLLRESHGLEINVLDRDAQPQAPRSAVRRVWVWRHYLLALLATFMAAGLAWAVSSVLALPNISLVFLAAVLLVAVRSSLGPALACAVMSFLTYDFLFIPPNLSFRIQREEDVLTLVFFLLMAALTGNLAARQRRQLQALRETQAQTSQLLDLSRRLTVATDRQAVFNAAGQHLDGWQDMQVCLLERNVEGQLQVASGEAHAFSDNERAAAEWAWQHGQAAGHGSDTLPNGRWWWWPLAVDEQPLALLGVRPRSGQPLSDPRRRLLTALGQPLAQALARARLAEQLEAARLHGETEQLRSALLASVSHDLRTPLTAMRGSIDSLLALGEAIPTADRRELLEGTRNEAERLDRYIQNLLDMTRLGHGGLKLARDWVAPADIVGSALNRLRAVLAPLRVHTDVPAELPLLFVHAALIEQALVNVLENAARFSPANGRLELQVSVQDALLCFAVSDQGPGIPVDDREKIFDMFYTAARGDRGGQGTGLGLAICQGMIGAHGGQILVGEGIDGQGTSITLCLPLPPQPETESETP
>NZ_CP007012.1|WP_025339951.1|3968303_3968855_-|potassium-transporting-ATPase-subunit-KdpC
MNAYVRPALSLALLMTLMTGALYPLAVTGIAQVVFPSQANGSLVRDDRGQVRGSALIAQDFQGDGWFHARPSAGAYATVASGASNLSPSNPALAERVKGDAAALYQAQQGPVPQALLTTSGSGLDPHLPPEAVAYQIPRVAAARQLPVERLQGLLEEATLHPLIGPPVVNVLALNQALERLSH

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Crispr_ID: NZ_CP007012_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007012_3

4175182-4175274

Orphan

Consensus_repeat	Method
ATCGAGCGCCGCCCGCGCGGCGCTTCGCGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007012_3

>merge|NZ_CP007012|3|4175182-4175274|CRISPRCasFinder
ATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTGTTCGCCTTGACGCTTTCTGCGCCTGTGAAATCGAGCGCCGCCCGCGCGGCGCATCGCGGG

>NZ_CP007012|3|3|4175182-4175274|CRISPRCasFinder
ATCGAGCGCCGCCCGCGCGGCGCTTCGCGGG	TGTTCGCCTTGACGCTTTCTGCGCCTGTGAA
ATCGAGCGCCGCCCGCGCGGCGCATCGCGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007012.1\|WP_025340074.1\|4175525_4176668_-\|flagellar-biosynthesis-protein-FlhB	unknown	unknown	gnl\|CDD\|235569
NZ_CP007012.1\|WP_161551427.1\|4169474_4169849_-\|chemotaxis-response-regulator-CheY	unknown	unknown	gnl\|CDD\|381150
NZ_CP007012.1\|WP_025340067.1\|4163640_4164498_-\|flagellar-motor-protein-MotD	unknown	unknown	gnl\|CDD\|181618
NZ_CP007012.1\|WP_003254408.1\|4170689_4171523_-\|MinD/ParA-family-protein	unknown	unknown	gnl\|CDD\|349758
NZ_CP007012.1\|WP_025340077.1\|4178947_4179418_-\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|168189
NZ_CP007012.1\|WP_025340079.1\|4181361_4182630_-\|flagellar-hook-length-control-protein-FliK	unknown	unknown	gnl\|CDD\|225686
NZ_CP007012.1\|WP_025340073.1\|4172935_4175065_-\|flagellar-biosynthesis-protein-FlhA	unknown	unknown	gnl\|CDD\|235672
NZ_CP007012.1\|WP_025340080.1\|4182702_4183050_-\|Hpt-domain-containing-protein	unknown	unknown	gnl\|CDD\|225108
NZ_CP007012.1\|WP_013973591.1\|4177454_4177724_-\|flagellar-biosynthesis-protein-FliQ	unknown	unknown	gnl\|CDD\|235567
NZ_CP007012.1\|WP_025340068.1\|4164501_4165242_-\|flagellar-motor-protein	unknown	unknown	gnl\|CDD\|181654
NZ_CP007012.1\|WP_025340072.1\|4171616_4172924_-\|flagellar-biosynthesis-protein-FlhF	unknown	unknown	gnl\|CDD\|235570
NZ_CP007012.1\|WP_025340071.1\|4168665_4169454_-\|protein-phosphatase-CheZ	unknown	unknown	gnl\|CDD\|377318
NZ_CP007012.1\|WP_003257293.1\|4177745_4178501_-\|flagellar-type-III-secretion-system-pore-protein-FliP	unknown	unknown	gnl\|CDD\|235566
NZ_CP007012.1\|WP_025340069.1\|4165241_4166375_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|234828
NZ_CP007012.1\|WP_013973595.1\|4179465_4180434_-\|flagellar-motor-switch-protein-FliM	unknown	unknown	gnl\|CDD\|235849
NZ_CP007012.1\|WP_013973585.1\|4169952_4170693_-\|RNA-polymerase-sigma-factor-FliA	unknown	unknown	gnl\|CDD\|235901
NZ_CP007012.1\|WP_025340078.1\|4180443_4180941_-\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|180207
NZ_CP007012.1\|WP_025340075.1\|4176670_4177447_-\|flagellar-type-III-secretion-system-protein-FliR	unknown	unknown	gnl\|CDD\|235568
NZ_CP007012.1\|WP_038408375.1\|4178500_4178935_-\|flagellar-biosynthetic-protein-FliO	unknown	unknown	gnl\|CDD\|225731
NZ_CP007012.1\|WP_025340070.1\|4166421_4168653_-\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716

Protein	Function_ID	Function_description	E-value
NZ_CP007012.1\|WP_025340074.1\|4175525_4176668_-\|flagellar-biosynthesis-protein-FlhB	gnl\|CDD\|235569	PRK05702, flhB, flagellar type III secretion system protein FlhB.	0
NZ_CP007012.1\|WP_161551427.1\|4169474_4169849_-\|chemotaxis-response-regulator-CheY	gnl\|CDD\|381150	cd19923, REC_CheY_CheY3, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY3 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY3, Escherichia coli CheY, and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.22098e-71
NZ_CP007012.1\|WP_025340067.1\|4163640_4164498_-\|flagellar-motor-protein-MotD	gnl\|CDD\|181618	PRK09038, PRK09038, flagellar motor protein MotD; Reviewed.	1.45771e-180
NZ_CP007012.1\|WP_003254408.1\|4170689_4171523_-\|MinD/ParA-family-protein	gnl\|CDD\|349758	cd02038, FlhG-like, MinD-like ATPase FlhG. FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.	4.26107e-119
NZ_CP007012.1\|WP_025340077.1\|4178947_4179418_-\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|168189	PRK05698, fliN, flagellar motor switch protein FliN.	4.15493e-97
NZ_CP007012.1\|WP_025340079.1\|4181361_4182630_-\|flagellar-hook-length-control-protein-FliK	gnl\|CDD\|225686	COG3144, FliK, Flagellar hook-length control protein [Cell motility and secretion].	4.69015e-20
NZ_CP007012.1\|WP_025340073.1\|4172935_4175065_-\|flagellar-biosynthesis-protein-FlhA	gnl\|CDD\|235672	PRK06012, flhA, flagellar type III secretion system protein FlhA.	0
NZ_CP007012.1\|WP_025340080.1\|4182702_4183050_-\|Hpt-domain-containing-protein	gnl\|CDD\|225108	COG2198, ArcB, FOG: HPt domain [Signal transduction mechanisms].	1.02058e-10
NZ_CP007012.1\|WP_013973591.1\|4177454_4177724_-\|flagellar-biosynthesis-protein-FliQ	gnl\|CDD\|235567	PRK05700, fliQ, flagellar type III secretion system protein FliQ.	2.16397e-33
NZ_CP007012.1\|WP_025340068.1\|4164501_4165242_-\|flagellar-motor-protein	gnl\|CDD\|181654	PRK09109, motC, flagellar motor protein; Reviewed.	2.95957e-163
NZ_CP007012.1\|WP_025340072.1\|4171616_4172924_-\|flagellar-biosynthesis-protein-FlhF	gnl\|CDD\|235570	PRK05703, flhF, flagellar biosynthesis protein FlhF.	0
NZ_CP007012.1\|WP_025340071.1\|4168665_4169454_-\|protein-phosphatase-CheZ	gnl\|CDD\|377318	pfam04344, CheZ, Chemotaxis phosphatase, CheZ. This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterized by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site.	1.27694e-93
NZ_CP007012.1\|WP_003257293.1\|4177745_4178501_-\|flagellar-type-III-secretion-system-pore-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	2.02062e-127
NZ_CP007012.1\|WP_025340069.1\|4165241_4166375_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	0
NZ_CP007012.1\|WP_013973595.1\|4179465_4180434_-\|flagellar-motor-switch-protein-FliM	gnl\|CDD\|235849	PRK06666, fliM, flagellar motor switch protein FliM; Validated.	3.35537e-171
NZ_CP007012.1\|WP_013973585.1\|4169952_4170693_-\|RNA-polymerase-sigma-factor-FliA	gnl\|CDD\|235901	PRK06986, fliA, flagellar biosynthesis sigma factor; Validated.	1.56059e-129
NZ_CP007012.1\|WP_025340078.1\|4180443_4180941_-\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|180207	PRK05696, fliL, flagellar basal body-associated protein FliL; Reviewed.	6.25942e-77
NZ_CP007012.1\|WP_025340075.1\|4176670_4177447_-\|flagellar-type-III-secretion-system-protein-FliR	gnl\|CDD\|235568	PRK05701, fliR, flagellar type III secretion system protein FliR.	1.84933e-76
NZ_CP007012.1\|WP_038408375.1\|4178500_4178935_-\|flagellar-biosynthetic-protein-FliO	gnl\|CDD\|225731	COG3190, FliO, Flagellar biogenesis protein [Cell motility and secretion].	2.11973e-27
NZ_CP007012.1\|WP_025340070.1\|4166421_4168653_-\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	0

>NZ_CP007012.1|WP_025340073.1|4172935_4175065_-|flagellar-biosynthesis-protein-FlhA
MDRTQLISNARNNLAGLGRGNLGVPLLLLVMLAMMMLPIPPFLLDVFFTFNIALSIVVLLVCVYALRPLDFAAFPTILLVATLLRLALNVASTRVVMLHGQEGHGAAGKVIQAFGEVVIGGNYVVGAVVFAILMIINFVVVTKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIDQAQAKHRRAEVAQEAEFYGSMDGASKFVRGDAIAGLLILFINLIGGMLIGMLQHGMSFGDAGKVYALLTIGDGLVAQLPSLLLSTAAAIMVTRASGSEDMGKLINRQMFDSPKALAVSAALMIVMGLVPGMPHVAFLSLGLLAGGGAYLVWKKQQKAKAQALQEAQRQQDLLPSPQRALETKELGWDDVTPIDMIGLEVGYRLIPLVDRNQGGQLLARIKGVRKKLSQDLGFLMPTVHIRDNLDLQPSAYRLTLMGVILAEAEIYPDRELAINPGQVFGTLNGIAARDPAFGLEAVWIDVGQRSQAQSLGYTVVDASTVVATHLNQILQKHCHELIGHEEVQQLLQVLAKASPKLAEELVPGVISLSGLLKVLQALLSEQVPVRDIRSIAEAIANNAGKSQDTAALVAAVRVGLCRAIVQSIVGVESELPVITLEPRLEQILLNSLQRAGQGQEDGVLLEPSMAEKLQRSLIEAAQRQEMQGQPAILLVAGPIRAMLSRFGRLAVPNLHVLAYQEIPDNKQVTIVATVGPNG
>NZ_CP007012.1|WP_025340072.1|4171616_4172924_-|flagellar-biosynthesis-protein-FlhF
MQVKRFFAADMRQAMKLVRDELGADAAIIGNRRIAGGVELTAALDYKLSALAPRVPNAELEEELRKTHTRIATAQAELGHRQDSSDNNRQLFAGQSLTAAEPLVEPHVDVPEAAAAPASAPVDPRLFDAMRSELSGLRELLEVQLGSLAWNQLQGSKPQQATVWRRLQRIGLSGPIARELLDLTAEIDEPRQAWRMLLAHLARMIEIPEVEPIEEGGVIAMVGPAGMGKTTTLAKLAARYVLKYGAQNLALVSMDSFRIGAQEQLKTLGRILNVPVTYVDPGQSLAAALEPLLRKRVVLIDTAGLQASDPALRMQLETLAGRGIAAKNYLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHELPVAYLTDGPRIPDDLHLPRGHQLVTRAVNVQQQDEPSEEAMADMFADLYHNPRRAG
>NZ_CP007012.1|WP_003254408.1|4170689_4171523_-|MinD/ParA-family-protein
MGSMHPVQVIAVTGGKGGVGKTNVSVNLSLALAELGRRVMLLDADLGLANVDVLLGLTPKRTLADVIEGRCELRDVMLQGPGGVRIVPAASGTQSMVHLAPAQHAGLIQAFSEIGDNLDVLVIDTAAGIGDSVVSFVRAAQEVLLVVCDEPTSITDAYALIKLLNRDYGMNRFRVLANMAQSPQEGRNLFAKLTKVTDRFLDVALQYVGAVPYDECVRKAVQKQRAVYEAFPRSKCALAFKAIAQKVDSWPLPANPRGHLEFFVERLVQPTSAGPVL
>NZ_CP007012.1|WP_013973585.1|4169952_4170693_-|RNA-polymerase-sigma-factor-FliA
MNASGFKMYSRASKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVEPARGLEDERFQVALTEAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRSRLGEWRAR
>NZ_CP007012.1|WP_161551427.1|4169474_4169849_-|chemotaxis-response-regulator-CheY
MKILIVDDFSTMRRIIKNLLRDLGFTNTEEADDGTTALPMLENGHYDFLVTDWNMPGMSGIDLLRKVRAHDRLKTMPVLMVTAEAKRDQIIEAAQAGVNGYVVKPFTAQVLKEKIEKIFERVNG
>NZ_CP007012.1|WP_025340071.1|4168665_4169454_-|protein-phosphatase-CheZ
MDSSQTSLGEFESTLKKHAQELVESLERGRFGEAVQLIHELNQTRDRGLYQEVGKLTRELHSAIVSFQIDPTMPQAEEVSQITDATERLSYVVRLTEGAANRTMDLVEESTPVLNDLASEAQALSTDWQRFMRREVAAPEFRELVKRVDSFLTHSAEGNRKVAGHLNDILLAQDYQDLTGQVIKRVTTLVTEVESNLLKLVLMASQVDRFAGIQHDHDQLRAEKDREKHPTRGEGPQIHADKREDVVSGQDDVDDLLSSLGF
>NZ_CP007012.1|WP_025340070.1|4166421_4168653_-|chemotaxis-protein-CheA
MSFGADEEILQDFLVEAGEILEQLSEQLVELESRPDDADLLNAIFRGFHTVKGGAGFLQLNELVECCHIAENVFDVLRKGERRVDAELMDVVLEALDTVNSMFGQVRERTEVTAATPELLAALSRLAEPGGAEAVEVPAAAAPAPVAEAPAEEQDITDSEFEQLLDSLDAVKAQAAADEQMQGETVSGEGDEISDAEFESLLDQLHGKGQFSAEVAAQPVASAPEVASDEITDAEFESLLDQLHGKGTFQADALPAAKAQTPAATDTSAASDEISEHEFEALLDQLHGKGKFGGDVAAVEAPAAAKVQAPVAAKADSQPVAKPAAVAAPAPAPASKPAAAPRAPAPAAEKHGSEAETTVRVDTARLDEIMNMVGELVLVRNRLVRLGLNSGDEAMSKAVSNLDVVTADLQTAVMKTRMQPIKKVFGRFPRLVRDLARQLKKEINLELVGEETDLDKNLVEALADPLVHLVRNAVDHGVEMPEEREASGKARTGRVVLSAEQEGDHILLSISDDGKGMDPNILRAKAVEKGLMDKDAADRLSESDCYNLIFAPGFSTKTEISDVSGRGVGMDVVKTKISQLNGSINIFSAKGQGSKIVIKVPLTLAIMPTLMVMLGNQAFAFPLVNVNEIFHLDLSRTNVVDGQEVVIVRDKALPLFYLKRWLVQGQVHEEQHEGHVVILSVGTQRIGFVVDQLVGQEEVVIKPLGKMLQGTPGMSGATITGDGRIALILDVPSMLKRYAARRI
>NZ_CP007012.1|WP_025340069.1|4165241_4166375_-|chemotaxis-response-regulator-protein-glutamate-methylesterase
MAVKVLVVDDSGFFRRRVSEILSADPTIQVVGTATNGKEAIDQALALKPDVITMDYEMPMMDGITAVRHIMQRCPTPVLMFSSLTHEGARVTLDALDAGAVDYLPKNFEDISRNPDKVKQLLCEKVHTISRSNRRFGSYASHAPVAAPAPAGSSHAPTSSFASPAAARTPAPARAAAPAAAPAHSPAPKRKPYKLVAIGTSTGGPVALQRVLTQLPANFPAPIVLIQHMPAAFTKAFAERLDKLCRISVKEAEDGDMLRPGLALLAPGGKQMMIDGRGAVKILPGDERLNYKPCVDITFGSAAKSYGDKVLSVVLTGMGADGREGARLLKQGGSTVWAQDEASCVIYGMPMAIVKANLADAVYSLDEIGKHLVEACV
>NZ_CP007012.1|WP_025340068.1|4164501_4165242_-|flagellar-motor-protein
MDVLSLIGLILAFVAIVGGNFLEGGHVGALINGPAALIVLGGTLAAALLQSPLSSFKRALQILRWILFPPRVDLAGGIDRVVNWSLTARKEGLLGLEGVADSEPDPYARKGLQLLVDGAEPEAIRSILEVDFLTQESRDIQAAKVFESMGGYAPTIGIIGAVMGLIHVMGNLADPSQLGNGIAVAFVATIYGVASANLVLLPVANKLKAIVMRQSRYREMLLEGLLSIAEGENPRSIELKLQGFME
>NZ_CP007012.1|WP_025340067.1|4163640_4164498_-|flagellar-motor-protein-MotD
MRRRRHTEEHENHERWLVSYADFITLLFAFFVVMYSISSINEGKYKVISQALLGVFNDPERSMKPIPIGEERPLSVRPAEPLVKDSEQTDAGLGATSVDPLKTISNDVRDAFGDLIKSDQMTVRGNELWIEIELNSSLLFGSGDAMPSDKAFAIIEKVAGILKPFANPVHVEGFTDNLPIRTAQYPTNWELSSARAASIVRLLAMEGVNPARMASVGYGEYQPVASNDTAEGRARNRRVVLVISRNLEVRRSLTGSGSANATPDAALRRAGTQSAPATPATVAGQ
>NZ_CP007012.1|WP_025340074.1|4175525_4176668_-|flagellar-biosynthesis-protein-FlhB
MAESESGQDKTEDPTEKRKRDAREKGEIARSKELNTVAVTLAGAGGLLAFGGHLAETLLEMMRMNFSLTRDIIVDERAMGAFLLASGKMAIWATQPVLILLFVISFVAPIALSGFLFSGSLLQPKFSRMNPLSGIKRMFSMHALTELLKALAKFFVILVVAVVVLVSDRQALLSIANEPLEQAIIHSLQVVGWSALWMSAGLLLIAAADVPFQLWQTHKKMKMTKQEVRDEYKDSEGKPEVKQRIRQLQREVSQRRMMAAVPQADVIITNPTHYAVALQYDPEKGGAAPLLLAKGTDFIALKIREIGVEHKVQILESPALARAIYYSTELEQEIPAGLYLAVAQVLAYVFQIRQYRAGKGKRPEPLKDDLPIPPDLRRDS
>NZ_CP007012.1|WP_025340075.1|4176670_4177447_-|flagellar-type-III-secretion-system-protein-FliR
MLELTDTQIGTWVATFILPLFRVTAVLMTMPIFGTRMLPARVRLYVAVAITVVIVPALPPLPEFDPLSLRGLLLCAEQIIVGALFGLALQLLFQVFVIAGQIVAVQMGMAFASMVDPANGVNVTVISQFMTMLVSVLFLLMNGHLVVFEVLTESFTTLPVGNALVVNHFWELAGRLGWVFAAGLLLILPVIAALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVMGMFIFWVGLADVLSHYQALASEALQWLRELARAR
>NZ_CP007012.1|WP_013973591.1|4177454_4177724_-|flagellar-biosynthesis-protein-FliQ
MTPEVAVDLFRDALWLTTLMVAVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVMLVTLIIAGPWLVQKFMEYITSLYTNIPQLIG
>NZ_CP007012.1|WP_003257293.1|4177745_4178501_-|flagellar-type-III-secretion-system-pore-protein-FliP
MSGALRVLLTLALLLAAPLALGADPLSIPAITLSNTADGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIMAPVFDRVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLSKRTDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTLASSFGGV
>NZ_CP007012.1|WP_038408375.1|4178500_4178935_-|flagellar-biosynthetic-protein-FliO
MRAIAALAALLASQACLAAATPAATPATAPGNLGGQLAQMVFGLLLVVGLIFFLAWLLRRMQSTAVKGGQVIEIVGSRAIGPRDRLLLVQVGKEQILIGHTPGSIEALHVLAEPVEVPENARQATPEFAQRLMELMGKDPKDKK
>NZ_CP007012.1|WP_025340077.1|4178947_4179418_-|flagellar-motor-switch-protein-FliN
MANENEITSAEDQALADEWAAALEETGAAGQADIDALLGGDTGSSTGGTGRLPMEEFASSPKPNENVSLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKLR
>NZ_CP007012.1|WP_013973595.1|4179465_4180434_-|flagellar-motor-switch-protein-FliM
MAVQDLLSQDEIDALLHGVDDGLVQTESASEPGSIKSYDLTSQDRIVRGRMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFILDAKLVFKLVDNFFGGDGRHAKIEGREFTPTELRVVRMVLDQCFVDLKEAWQAIMPVTFEYMNSEVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDERWVKALREDVLDVAVPLTATVARRQLKLRDILHMQPGDVIPVELPEHLVLRANGVPSFKARLGSHKGNLALQIIDPIERR
>NZ_CP007012.1|WP_025340078.1|4180443_4180941_-|flagellar-basal-body-associated-protein-FliL
MAKSEAVKDPATKGKLKLILLAVVGLLLAIGLSVGATWFIMHKSEPAPAADPAASNVKPAAIYEALAPAFVVNFNQNGRQRYMQVSITLQARSQADLDALKVHMPVIRNNLVMMFSGQGFDTLAGSPVGQEMLRQKATAVVQEVAQKEVGKPVVDQLLFTNFVLQ
>NZ_CP007012.1|WP_025340079.1|4181361_4182630_-|flagellar-hook-length-control-protein-FliK
MPVAPNPLLQGNAIANTSRSATAQADKPLQAPGDKGDGFGQVMARQGRDKAAGQDDKVAEAKPKDKPEAAQGGKKAAADKPAVADDGKQLPADDQAQADTGLRDASLVAGQVTDAQPGAQLIQAQAEAVAPVLQAAAAQAQVTAELPEEAAAEEAFDPDADPLANLPTLRLALEQSAQAKGATSAHALDPSQAQGEEGQMAVNTLANLVENAEGETGEPGDKAFAGLLEDGLKDTKSAGSDTRVDDFANRLANLTQAATAKTANAVPANASPLHQPLPMNQNAWAEGLVNRVMYLSSQNLKSADIQLEPAELGRLDIRVNVATDQSTQVTFISGHAGVRDALDSQVHRLRELFAQQGLAQPDVNVADQSRGQQQQQQGQAQGSNLSGVAARRAEQGGAEAVDSARPVEQQVVVGDSAVDYYA
>NZ_CP007012.1|WP_025340080.1|4182702_4183050_-|Hpt-domain-containing-protein
MTDMHIDHKVLSDLREVMEDGYLQLVQTFLDDSERRLGQLHAAKSAEELGSAAHSFKGSSSNMGAVALASLCQQLEERARRPPLYGIEDLINRIDLEFVEVQRFYRGEQQRISAG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP007012_3	3.1\|4175213\|31\|NZ_CP007012\|CRISPRCasFinder	4175213-4175243	31	NZ_CP007012.1	828928-828958	1	0.968

1. spacer 3.1|4175213|31|NZ_CP007012|CRISPRCasFinder matches to position: 828928-828958, mismatch: 1, identity: 0.968

tgttcgccttgacgctttctgcgcctgtgaa	CRISPR spacer
tgttcgccttgacactttctgcgcctgtgaa	Protospacer
*************.*****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

264419 : 331722

Bacillus_phage(25.0%)

holin,protease,integrase

attL 293579:293623|attR 323430:323474

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169774668.1\|264419_264869_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_013970457.1\|265011_265413_+	RNA-binding protein S4	NA	NA	NA	NA
WP_025337332.1\|265540_266335_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_015268604.1\|266456_267356_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_025337333.1\|267535_269077_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	3.9e-126	46.9
WP_025337334.1\|269367_269808_+	thioesterase family protein	NA	NA	NA	NA
WP_025337335.1\|269862_270345_-	hypothetical protein	NA	NA	NA	NA
WP_025337336.1\|270663_273009_-	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA
WP_025337337.1\|273014_273845_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_023661080.1\|274032_274473_+	peptidoglycan-binding protein LysM	NA	NA	NA	NA
WP_003257447.1\|274585_275248_-	GMP/IMP nucleotidase	NA	NA	NA	NA
WP_015268611.1\|275312_275879_+	ADP compounds hydrolase NudE	NA	NA	NA	NA
WP_025337338.1\|275875_276694_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_025337339.1\|276850_277306_-	YiiD C-terminal domain-containing protein	NA	NA	NA	NA
WP_025337340.1\|277305_278712_-	sigma-54-dependent Fis family transcriptional regulator	W8CYM9	Bacillus_phage	3.9e-08	28.7
WP_025337341.1\|278708_280523_-	sensor histidine kinase	NA	NA	NA	NA
WP_025337342.1\|280565_281111_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	3.9e-49	52.8
WP_025337343.1\|281390_282497_+	agmatine deiminase	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	7.3e-103	50.6
WP_025337344.1\|283013_285092_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_015268619.1\|285596_286916_+	OprD family porin	NA	NA	NA	NA
WP_025337345.1\|287043_288711_-	FMN-binding glutamate synthase family protein	NA	NA	NA	NA
WP_025337346.1\|288939_290328_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_025337347.1\|290329_291049_-	response regulator	W8CYM9	Bacillus_phage	3.2e-30	34.1
WP_025337348.1\|291189_293487_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
293579:293623	attL	NA	NA	NA	NA
WP_025337349.1\|293639_293846_-	DUF3079 domain-containing protein	NA	NA	NA	NA
WP_081742214.1\|294023_294377_+	type II toxin-antitoxin system HigB family toxin	NA	NA	NA	NA
WP_025337351.1\|294423_294897_+	transcriptional regulator	NA	NA	NA	NA
WP_081742215.1\|295281_295734_-	hypothetical protein	NA	NA	NA	NA
WP_025337353.1\|296625_300627_+	hypothetical protein	NA	NA	NA	NA
WP_025337355.1\|301331_303284_+	AAA family ATPase	NA	NA	NA	NA
WP_025337356.1\|303268_305263_+	ATP-dependent helicase	NA	NA	NA	NA
WP_025337357.1\|305407_305683_-	hypothetical protein	NA	NA	NA	NA
WP_025337358.1\|305679_306660_-\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_025337359.1\|307588_308908_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B0VMI6	Pseudomonas_phage	1.2e-67	38.8
WP_025337360.1\|309244_309493_-	hypothetical protein	NA	NA	NA	NA
WP_025337361.1\|310060_310351_+	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_025337362.1\|310739_311945_-	methyltransferase	NA	NA	NA	NA
WP_015268628.1\|312068_312758_-	ABC transporter permease	NA	NA	NA	NA
WP_025337363.1\|312757_313450_-	ABC transporter permease	NA	NA	NA	NA
WP_013970486.1\|313504_314257_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003257472.1\|314268_315042_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.4e-21	32.0
WP_025337364.1\|315706_317092_+	GABA permease	NA	NA	NA	NA
WP_025337365.1\|317255_317699_-	hypothetical protein	NA	NA	NA	NA
WP_025337366.1\|317937_318207_+	hypothetical protein	NA	NA	NA	NA
WP_170978885.1\|318266_319133_-	polyphosphate kinase 2	NA	NA	NA	NA
WP_025337368.1\|319614_319887_-	oxidative damage protection protein	NA	NA	NA	NA
WP_013970490.1\|319883_320951_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_025337369.1\|320947_323194_-	AsmA family protein	NA	NA	NA	NA
WP_025337370.1\|323611_325273_+	OFA family MFS transporter	NA	NA	NA	NA
323430:323474	attR	NA	NA	NA	NA
WP_003255736.1\|325509_326103_+	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_025337371.1\|326103_326742_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_003257483.1\|326742_327003_+	DUF2164 domain-containing protein	NA	NA	NA	NA
WP_003257484.1\|327030_327768_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_025337372.1\|327778_328549_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_025337373.1\|328669_329848_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.9e-24	36.2
WP_169774667.1\|329844_330693_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_025337374.1\|330774_331722_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA

DBSCAN-SWA_2

1024481 : 1032260

Thermobifida_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025337823.1\|1024481_1025336_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	6.2e-09	32.8
WP_015269060.1\|1025338_1025803_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_003255135.1\|1025815_1026124_-	ribosome-associated translation inhibitor RaiA	A0A0K1LP60	Escherichia_phage	4.4e-05	34.1
WP_015269061.1\|1026203_1027697_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_015269062.1\|1027872_1028598_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.9e-23	27.0
WP_015269063.1\|1028598_1029123_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_025337824.1\|1029109_1029682_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_024086339.1\|1029690_1030215_-	HAD family hydrolase	A0A140XBD6	Dickeya_phage	3.1e-27	47.8
WP_003257920.1\|1030227_1031202_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	3.6e-37	33.1
WP_012270662.1\|1031450_1032260_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	4.5e-25	32.5

DBSCAN-SWA_3

1478690 : 1490031

Paramecium_bursaria_Chlorella_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081742241.1\|1478690_1480664_-	acyltransferase	C6ZR20	Salmonella_phage	8.6e-62	34.2
WP_155951610.1\|1480676_1481828_-	hypothetical protein	NA	NA	NA	NA
WP_081742242.1\|1481836_1482493_-	CatB-related O-acetyltransferase	M1HKK6	Paramecium_bursaria_Chlorella_virus	9.6e-18	28.1
WP_038407984.1\|1482510_1486260_-	FkbM family methyltransferase	A0A218MM73	uncultured_virus	1.9e-25	35.8
WP_025338136.1\|1486261_1487566_-	nucleotide sugar dehydrogenase	M1I178	Paramecium_bursaria_Chlorella_virus	1.4e-31	28.5
WP_025338137.1\|1487631_1488894_-	UDP-N-acetyl-D-mannosamine dehydrogenase	M1HPJ2	Paramecium_bursaria_Chlorella_virus	3.0e-28	28.9
WP_025338138.1\|1488894_1490031_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	1.3e-25	30.3

DBSCAN-SWA_4

3622002 : 3711794

uncultured_Caudovirales_phage(35.29%)

portal,lysis,protease,terminase,tRNA,tail,head,plate,holin,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023662815.1\|3622002_3623022_-\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	2.6e-22	25.5
WP_025339697.1\|3623219_3623930_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_003257405.1\|3623986_3624304_+	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA
WP_025339698.1\|3624598_3625666_+	phosphotransferase family protein	NA	NA	NA	NA
WP_025339699.1\|3625702_3626470_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.3e-18	31.7
WP_025339700.1\|3626470_3627292_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_025339701.1\|3627506_3627857_-	hypothetical protein	NA	NA	NA	NA
WP_025339702.1\|3627970_3628261_+	RcnB family protein	NA	NA	NA	NA
WP_081742349.1\|3628387_3628582_+	hypothetical protein	NA	NA	NA	NA
WP_025339704.1\|3628656_3629040_+	hypothetical protein	NA	NA	NA	NA
WP_025339705.1\|3629267_3631097_+	SLC13 family permease	NA	NA	NA	NA
WP_025339706.1\|3631236_3632661_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.2e-19	33.9
WP_025339707.1\|3632662_3633424_-	TSUP family transporter	NA	NA	NA	NA
WP_025339708.1\|3633522_3634428_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_155951628.1\|3634656_3634851_-	hypothetical protein	NA	NA	NA	NA
WP_025339709.1\|3635032_3635386_-	hypothetical protein	NA	NA	NA	NA
WP_025339710.1\|3635593_3636637_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_025339711.1\|3636931_3637117_+	hypothetical protein	NA	NA	NA	NA
WP_025339712.1\|3637335_3637776_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_025339713.1\|3637966_3641158_-	multidrug efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	2.8e-62	22.6
WP_025339714.1\|3641179_3642394_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_025339715.1\|3642626_3642836_+	hypothetical protein	NA	NA	NA	NA
WP_025339716.1\|3643346_3644780_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_025339717.1\|3644917_3645301_+	hypothetical protein	NA	NA	NA	NA
WP_025339718.1\|3645422_3655058_-	retention module-containing protein	NA	NA	NA	NA
WP_155951630.1\|3656821_3657394_+	hypothetical protein	NA	NA	NA	NA
WP_155951631.1\|3657628_3658564_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_025339720.1\|3658560_3659043_+	hypothetical protein	NA	NA	NA	NA
WP_025339721.1\|3659084_3660143_-\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	7.1e-156	76.4
WP_025339722.1\|3660139_3661897_-\|terminase	terminase ATPase subunit family protein	A0A2H4JGK4	uncultured_Caudovirales_phage	2.6e-280	82.5
WP_025339723.1\|3662048_3662903_+\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	1.8e-93	66.7
WP_025339724.1\|3662936_3663944_+\|capsid	phage major capsid protein, P2 family	A0A077KEQ8	Ralstonia_phage	9.9e-123	64.1
WP_038408207.1\|3663955_3664654_+\|terminase	terminase endonuclease subunit	Q9ZXM2	Pseudomonas_virus	3.1e-83	68.3
WP_025339726.1\|3664759_3665236_+\|head	head completion/stabilization protein	Q9ZXM1	Pseudomonas_virus	7.4e-44	63.9
WP_025339727.1\|3665235_3665448_+\|tail	tail protein X	A0A2H4J946	uncultured_Caudovirales_phage	3.9e-21	72.7
WP_025339728.1\|3665490_3665805_+\|holin	phage holin, lambda family	A0A2H4JFM8	uncultured_Caudovirales_phage	1.1e-22	54.0
WP_025339729.1\|3665801_3666659_+	N-acetylmuramidase family protein	Q9ZXL6	Pseudomonas_virus	3.3e-95	64.5
WP_025339730.1\|3666658_3667123_+\|lysis	phage lysis regulatory protein, LysB family	Q9ZXL5	Pseudomonas_virus	3.0e-18	41.3
WP_025339731.1\|3667198_3667732_+\|tail	phage tail protein	Q9ZXL3	Pseudomonas_virus	9.7e-53	59.6
WP_025339732.1\|3667724_3668180_+	phage virion morphogenesis protein	Q9ZXL2	Pseudomonas_virus	6.0e-43	60.7
WP_025339733.1\|3668241_3668817_+\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	1.2e-64	65.6
WP_025339734.1\|3668813_3669158_+	GPW/gp25 family protein	Q9ZXK9	Pseudomonas_virus	7.5e-30	55.8
WP_025339735.1\|3669169_3670168_+\|plate	baseplate J/gp47 family protein	A0A1J0I2M3	Salmonella_phage	2.5e-65	45.2
WP_025339736.1\|3670164_3670887_+\|tail	phage tail protein I	F1BUP2	Erwinia_phage	3.0e-12	29.8
WP_025339737.1\|3670883_3671570_+\|tail	phage tail protein	A2I2X8	Vibrio_virus	1.8e-19	36.6
WP_025339738.1\|3671577_3672315_+	hypothetical protein	NA	NA	NA	NA
WP_025339739.1\|3672322_3672784_+	hypothetical protein	A4PE47	Ralstonia_virus	1.0e-18	44.4
WP_025339740.1\|3672886_3674059_+\|tail	phage tail sheath protein	Q9ZXK4	Pseudomonas_virus	3.5e-172	77.1
WP_025339741.1\|3674073_3674589_+\|tail	phage major tail tube protein	Q9ZXK3	Pseudomonas_virus	3.3e-66	68.4
WP_025339742.1\|3674620_3674959_+\|tail	phage tail assembly protein	Q9ZXK2	Pseudomonas_virus	4.8e-21	54.2
WP_025339743.1\|3674967_3675087_+\|tail	GpE family phage tail protein	Q9ZXK1	Pseudomonas_virus	8.0e-08	64.1
WP_025339744.1\|3675076_3678475_+\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	4.1e-136	46.8
WP_025339745.1\|3678481_3678922_+\|tail	phage tail protein	A0A2H4JG54	uncultured_Caudovirales_phage	2.4e-57	72.6
WP_025339746.1\|3678918_3680190_+	phage late control D family protein	Q9ZXJ8	Pseudomonas_virus	1.1e-179	76.4
WP_155951632.1\|3680194_3681538_-	hypothetical protein	NA	NA	NA	NA
WP_025339748.1\|3682023_3682371_-	DUF2511 domain-containing protein	NA	NA	NA	NA
WP_025339749.1\|3682384_3682702_-	helix-turn-helix transcriptional regulator	A0A2H4JFL3	uncultured_Caudovirales_phage	7.6e-21	52.0
WP_061551190.1\|3682786_3682996_+	DNA-binding protein	NA	NA	NA	NA
WP_025339750.1\|3683025_3683499_+	hypothetical protein	A0A2H4JG61	uncultured_Caudovirales_phage	1.1e-52	62.7
WP_025339751.1\|3683495_3683795_+	ogr/Delta-like zinc finger family protein	Q9ZXJ1	Pseudomonas_virus	5.0e-14	45.7
WP_025339752.1\|3683791_3684166_+	hypothetical protein	NA	NA	NA	NA
WP_025339753.1\|3684235_3684481_+	hypothetical protein	A0A2H4JGL7	uncultured_Caudovirales_phage	4.1e-14	53.8
WP_025339754.1\|3684492_3687216_+	toprim domain-containing protein	A0A2H4J936	uncultured_Caudovirales_phage	0.0e+00	75.7
WP_173585848.1\|3687560_3687878_+	hypothetical protein	A0A0U4JP55	Pseudomonas_phage	5.8e-29	61.0
WP_025339756.1\|3687874_3688090_+	hypothetical protein	NA	NA	NA	NA
WP_025339757.1\|3688143_3688731_+	hypothetical protein	NA	NA	NA	NA
WP_025339758.1\|3688727_3689087_+	hypothetical protein	NA	NA	NA	NA
WP_025339759.1\|3689146_3689416_+	hypothetical protein	NA	NA	NA	NA
WP_025339760.1\|3689412_3689616_+	hypothetical protein	Q9ZXI5	Pseudomonas_virus	1.2e-14	65.6
WP_025339761.1\|3689605_3691411_+	DNA cytosine methyltransferase	A0A0U1T6D1	Pseudomonas_phage	1.2e-222	71.5
WP_025339762.1\|3691528_3692698_+	DUF3596 domain-containing protein	A0A2H4JGM5	uncultured_Caudovirales_phage	2.6e-151	65.6
WP_003251184.1\|3693041_3693713_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.1e-105	91.0
WP_013973275.1\|3694031_3695411_+	uracil-xanthine permease	H9YQ34	environmental_Halophage	1.6e-27	51.1
WP_025339763.1\|3695595_3695988_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.1e-53	79.8
WP_025339764.1\|3695989_3696349_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	2.3e-34	62.5
WP_025339765.1\|3696348_3696645_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	2.1e-25	61.6
WP_025339766.1\|3696641_3696977_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.3e-42	75.7
WP_025339767.1\|3696973_3697978_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.1e-153	79.8
WP_025339768.1\|3698070_3699030_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_025339769.1\|3699148_3700540_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_025339770.1\|3700540_3701821_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.0e-96	54.4
WP_025339771.1\|3701851_3702226_-	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	1.2e-09	44.6
WP_013973284.1\|3702222_3703548_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.5e-78	39.3
WP_003258873.1\|3703560_3704196_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_025339772.1\|3704258_3706748_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	9.7e-87	50.6
WP_155951633.1\|3706886_3707159_-	hypothetical protein	NA	NA	NA	NA
WP_025339773.1\|3707194_3707875_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_013973288.1\|3707931_3708639_+	arginyltransferase	NA	NA	NA	NA
WP_002553999.1\|3708741_3708960_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_025339774.1\|3709130_3711401_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	7.3e-166	43.0
WP_013973290.1\|3711431_3711794_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.8e-11	43.2

DBSCAN-SWA_5

3874140 : 3941048

Pseudomonas_virus(33.33%)

transposase,head,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025339895.1\|3874140_3874551_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_025339896.1\|3874554_3876321_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_025339897.1\|3876284_3877301_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_025339898.1\|3877297_3877855_+	FHA domain-containing protein	NA	NA	NA	NA
WP_025339899.1\|3877851_3878646_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_025339900.1\|3878698_3880036_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_025339901.1\|3880037_3880907_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_025339902.1\|3881041_3881557_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_025339903.1\|3881630_3883616_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	3.7e-28	25.4
WP_025339904.1\|3883664_3884096_+	DcrB-related protein	NA	NA	NA	NA
WP_155951635.1\|3888809_3889604_+	hypothetical protein	NA	NA	NA	NA
WP_177325764.1\|3890685_3891009_+	DcrB-related protein	NA	NA	NA	NA
WP_155951636.1\|3891061_3891217_+	hypothetical protein	NA	NA	NA	NA
WP_177325765.1\|3891235_3891577_+	hypothetical protein	NA	NA	NA	NA
WP_025339908.1\|3893087_3893648_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_013973365.1\|3893680_3895504_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_015271036.1\|3895510_3896149_-	UvrY/SirA/GacA family response regulator transcription factor	NA	NA	NA	NA
WP_025339909.1\|3896212_3896602_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_025339910.1\|3896719_3897151_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015271039.1\|3897335_3897722_-	DUF488 family protein	NA	NA	NA	NA
WP_025339911.1\|3897847_3899464_+	inorganic phosphate transporter	NA	NA	NA	NA
WP_025339912.1\|3899637_3900333_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA
WP_025339913.1\|3900420_3900918_-	PaaI family thioesterase	NA	NA	NA	NA
WP_025339914.1\|3900978_3902361_-	amino acid permease	NA	NA	NA	NA
WP_015271044.1\|3902616_3903513_+	transcriptional regulator GcvA	NA	NA	NA	NA
WP_025339915.1\|3903745_3904996_+	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_015271046.1\|3904999_3905302_-	hypothetical protein	NA	NA	NA	NA
WP_025339916.1\|3905547_3905973_+	hypothetical protein	NA	NA	NA	NA
WP_025339917.1\|3906046_3908158_+	elongation factor G	A0A2K9L2P9	Tupanvirus	3.1e-41	25.0
WP_025339918.1\|3908366_3909809_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.6e-86	42.2
WP_025339919.1\|3909893_3911600_-	S8/S53 family peptidase	NA	NA	NA	NA
WP_025339920.1\|3911654_3912827_-	hypothetical protein	NA	NA	NA	NA
WP_177325766.1\|3912953_3913718_+	secretin	NA	NA	NA	NA
WP_013973380.1\|3914207_3915533_+	isocitrate lyase	NA	NA	NA	NA
WP_081742296.1\|3915762_3915930_-	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_025339922.1\|3916126_3916789_+	lysoplasmalogenase	NA	NA	NA	NA
WP_003251427.1\|3917172_3917586_+	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA
WP_003251429.1\|3917595_3918273_+	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA
WP_013973384.1\|3918351_3920133_+	NADH-quinone oxidoreductase subunit C/D	NA	NA	NA	NA
WP_003251433.1\|3920135_3920633_+	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA
WP_025339923.1\|3920629_3921994_+	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_025339924.1\|3922126_3924841_+	NADH-quinone oxidoreductase subunit NuoG	NA	NA	NA	NA
WP_003251440.1\|3924837_3925845_+	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA
WP_003251442.1\|3925856_3926405_+	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA
WP_003261007.1\|3926415_3926916_+	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA
WP_003251446.1\|3926919_3927228_+	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA
WP_025339925.1\|3927224_3929078_+	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA
WP_015271056.1\|3929127_3930660_+	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA
WP_025339926.1\|3930667_3932137_+	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA
WP_025339927.1\|3932216_3932480_-	ogr/Delta-like zinc finger family protein	Q9ZXJ1	Pseudomonas_virus	8.3e-13	48.7
WP_025339928.1\|3932680_3933073_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_025339929.1\|3933069_3933432_-	hypothetical protein	Q9ZXL8	Pseudomonas_virus	1.6e-06	41.2
WP_025339930.1\|3933424_3933772_-\|head	head completion/stabilization protein	NA	NA	NA	NA
WP_003261017.1\|3933783_3934032_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_025339931.1\|3934252_3936319_+	TonB-dependent receptor	NA	NA	NA	NA
WP_025339932.1\|3936491_3937052_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_003261019.1\|3937209_3937428_+	hypothetical protein	NA	NA	NA	NA
WP_025339933.1\|3937411_3939661_-	lysine decarboxylase	NA	NA	NA	NA
WP_025337292.1\|3940097_3941048_-\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	2.3e-28	38.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP007012

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection