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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_023134 Paenibacillus larvae subsp. larvae DSM 25430, complete sequence 1 crisprs cmr1gr7,cas10,cmr3gr5,cmr5gr11,cmr6gr7,csa3,c2c10_CAS-V-U3,cas14j,DinG,DEDDh,cas3 2 6 35 1
NC_023147 Paenibacillus larvae subsp. larvae DSM 25430 plasmid pPLA2_10, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NC_023134
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_023134_1 1647332-1647898 Orphan I-C
8 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_023134_1 1.1|1647364|32|NC_023134|PILER-CR,CRT 1647364-1647395 32 NC_023134.1 2685213-2685244 1 0.969
NC_023134_1 1.8|1647365|31|NC_023134|CRISPRCasFinder 1647365-1647395 31 NC_023134.1 2685214-2685244 1 0.968

1. spacer 1.1|1647364|32|NC_023134|PILER-CR,CRT matches to position: 2685213-2685244, mismatch: 1, identity: 0.969

ttgtttcgatgctatatttatacgcatcaata	CRISPR spacer
ttgtttcgatgctatatttgtacgcatcaata	Protospacer
*******************.************

2. spacer 1.8|1647365|31|NC_023134|CRISPRCasFinder matches to position: 2685214-2685244, mismatch: 1, identity: 0.968

tgtttcgatgctatatttatacgcatcaata	CRISPR spacer
tgtttcgatgctatatttgtacgcatcaata	Protospacer
******************.************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_023134_1 1.3|1647496|37|NC_023134|PILER-CR,CRT 1647496-1647532 37 KT361653 Paenibacillus phage Paisley, complete genome 41256-41292 0 1.0
NC_023134_1 1.3|1647496|37|NC_023134|PILER-CR,CRT 1647496-1647532 37 NC_028746 Paenibacillus phage Harrison, complete genome 41333-41369 0 1.0
NC_023134_1 1.6|1647699|37|NC_023134|PILER-CR,CRT 1647699-1647735 37 KT361653 Paenibacillus phage Paisley, complete genome 41256-41292 0 1.0
NC_023134_1 1.6|1647699|37|NC_023134|PILER-CR,CRT 1647699-1647735 37 NC_028746 Paenibacillus phage Harrison, complete genome 41333-41369 0 1.0
NC_023134_1 1.10|1647497|36|NC_023134|CRISPRCasFinder 1647497-1647532 36 KT361653 Paenibacillus phage Paisley, complete genome 41257-41292 0 1.0
NC_023134_1 1.10|1647497|36|NC_023134|CRISPRCasFinder 1647497-1647532 36 NC_028746 Paenibacillus phage Harrison, complete genome 41334-41369 0 1.0
NC_023134_1 1.13|1647700|36|NC_023134|CRISPRCasFinder 1647700-1647735 36 KT361653 Paenibacillus phage Paisley, complete genome 41257-41292 0 1.0
NC_023134_1 1.13|1647700|36|NC_023134|CRISPRCasFinder 1647700-1647735 36 NC_028746 Paenibacillus phage Harrison, complete genome 41334-41369 0 1.0
NC_023134_1 1.15|1647835|31|NC_023134|CRISPRCasFinder 1647835-1647865 31 NZ_CP020329 Paenibacillus larvae subsp. pulvifaciens strain CCM 38 plasmid pPLP2.1, complete sequence 35867-35897 2 0.935
NC_023134_1 1.15|1647835|31|NC_023134|CRISPRCasFinder 1647835-1647865 31 NZ_CP019796 Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 plasmid pPLP2, complete sequence 29492-29522 2 0.935
NC_023134_1 1.15|1647835|31|NC_023134|CRISPRCasFinder 1647835-1647865 31 NZ_CP019661 Paenibacillus larvae subsp. larvae strain Eric_IV plasmid unnamed2, complete sequence 30453-30483 2 0.935
NC_023134_1 1.15|1647835|31|NC_023134|CRISPRCasFinder 1647835-1647865 31 NZ_CP019658 Paenibacillus larvae subsp. larvae strain Eric_III plasmid unnamed3, complete sequence 30454-30484 2 0.935
NC_023134_1 1.16|1647834|32|NC_023134|CRT 1647834-1647865 32 NZ_CP020329 Paenibacillus larvae subsp. pulvifaciens strain CCM 38 plasmid pPLP2.1, complete sequence 35866-35897 3 0.906
NC_023134_1 1.16|1647834|32|NC_023134|CRT 1647834-1647865 32 NZ_CP019796 Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 plasmid pPLP2, complete sequence 29491-29522 3 0.906
NC_023134_1 1.16|1647834|32|NC_023134|CRT 1647834-1647865 32 NZ_CP019661 Paenibacillus larvae subsp. larvae strain Eric_IV plasmid unnamed2, complete sequence 30452-30483 3 0.906
NC_023134_1 1.16|1647834|32|NC_023134|CRT 1647834-1647865 32 NZ_CP019658 Paenibacillus larvae subsp. larvae strain Eric_III plasmid unnamed3, complete sequence 30453-30484 3 0.906
NC_023134_1 1.15|1647835|31|NC_023134|CRISPRCasFinder 1647835-1647865 31 NZ_CP019720 Paenibacillus larvae subsp. larvae strain Eric_V plasmid unnamed2, complete sequence 18377-18407 4 0.871
NC_023134_1 1.16|1647834|32|NC_023134|CRT 1647834-1647865 32 NZ_CP019720 Paenibacillus larvae subsp. larvae strain Eric_V plasmid unnamed2, complete sequence 18376-18407 5 0.844

1. spacer 1.3|1647496|37|NC_023134|PILER-CR,CRT matches to KT361653 (Paenibacillus phage Paisley, complete genome) position: , mismatch: 0, identity: 1.0

attacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
attacaggggcagggaggtacagaagataggaggtac	Protospacer
*************************************

2. spacer 1.3|1647496|37|NC_023134|PILER-CR,CRT matches to NC_028746 (Paenibacillus phage Harrison, complete genome) position: , mismatch: 0, identity: 1.0

attacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
attacaggggcagggaggtacagaagataggaggtac	Protospacer
*************************************

3. spacer 1.6|1647699|37|NC_023134|PILER-CR,CRT matches to KT361653 (Paenibacillus phage Paisley, complete genome) position: , mismatch: 0, identity: 1.0

attacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
attacaggggcagggaggtacagaagataggaggtac	Protospacer
*************************************

4. spacer 1.6|1647699|37|NC_023134|PILER-CR,CRT matches to NC_028746 (Paenibacillus phage Harrison, complete genome) position: , mismatch: 0, identity: 1.0

attacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
attacaggggcagggaggtacagaagataggaggtac	Protospacer
*************************************

5. spacer 1.10|1647497|36|NC_023134|CRISPRCasFinder matches to KT361653 (Paenibacillus phage Paisley, complete genome) position: , mismatch: 0, identity: 1.0

ttacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
ttacaggggcagggaggtacagaagataggaggtac	Protospacer
************************************

6. spacer 1.10|1647497|36|NC_023134|CRISPRCasFinder matches to NC_028746 (Paenibacillus phage Harrison, complete genome) position: , mismatch: 0, identity: 1.0

ttacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
ttacaggggcagggaggtacagaagataggaggtac	Protospacer
************************************

7. spacer 1.13|1647700|36|NC_023134|CRISPRCasFinder matches to KT361653 (Paenibacillus phage Paisley, complete genome) position: , mismatch: 0, identity: 1.0

ttacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
ttacaggggcagggaggtacagaagataggaggtac	Protospacer
************************************

8. spacer 1.13|1647700|36|NC_023134|CRISPRCasFinder matches to NC_028746 (Paenibacillus phage Harrison, complete genome) position: , mismatch: 0, identity: 1.0

ttacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
ttacaggggcagggaggtacagaagataggaggtac	Protospacer
************************************

9. spacer 1.15|1647835|31|NC_023134|CRISPRCasFinder matches to NZ_CP020329 (Paenibacillus larvae subsp. pulvifaciens strain CCM 38 plasmid pPLP2.1, complete sequence) position: , mismatch: 2, identity: 0.935

aattaagccgaccgccatatagcgtggctat	CRISPR spacer
acttaagccgaccgccatatagcgcggctat	Protospacer
* **********************.******

10. spacer 1.15|1647835|31|NC_023134|CRISPRCasFinder matches to NZ_CP019796 (Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 plasmid pPLP2, complete sequence) position: , mismatch: 2, identity: 0.935

aattaagccgaccgccatatagcgtggctat	CRISPR spacer
acttaagccgaccgccatatagcgcggctat	Protospacer
* **********************.******

11. spacer 1.15|1647835|31|NC_023134|CRISPRCasFinder matches to NZ_CP019661 (Paenibacillus larvae subsp. larvae strain Eric_IV plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.935

aattaagccgaccgccatatagcgtggctat	CRISPR spacer
acttaagccgaccgccatatagcgcggctat	Protospacer
* **********************.******

12. spacer 1.15|1647835|31|NC_023134|CRISPRCasFinder matches to NZ_CP019658 (Paenibacillus larvae subsp. larvae strain Eric_III plasmid unnamed3, complete sequence) position: , mismatch: 2, identity: 0.935

aattaagccgaccgccatatagcgtggctat	CRISPR spacer
acttaagccgaccgccatatagcgcggctat	Protospacer
* **********************.******

13. spacer 1.16|1647834|32|NC_023134|CRT matches to NZ_CP020329 (Paenibacillus larvae subsp. pulvifaciens strain CCM 38 plasmid pPLP2.1, complete sequence) position: , mismatch: 3, identity: 0.906

caattaagccgaccgccatatagcgtggctat	CRISPR spacer
tacttaagccgaccgccatatagcgcggctat	Protospacer
.* **********************.******

14. spacer 1.16|1647834|32|NC_023134|CRT matches to NZ_CP019796 (Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 plasmid pPLP2, complete sequence) position: , mismatch: 3, identity: 0.906

caattaagccgaccgccatatagcgtggctat	CRISPR spacer
tacttaagccgaccgccatatagcgcggctat	Protospacer
.* **********************.******

15. spacer 1.16|1647834|32|NC_023134|CRT matches to NZ_CP019661 (Paenibacillus larvae subsp. larvae strain Eric_IV plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.906

caattaagccgaccgccatatagcgtggctat	CRISPR spacer
tacttaagccgaccgccatatagcgcggctat	Protospacer
.* **********************.******

16. spacer 1.16|1647834|32|NC_023134|CRT matches to NZ_CP019658 (Paenibacillus larvae subsp. larvae strain Eric_III plasmid unnamed3, complete sequence) position: , mismatch: 3, identity: 0.906

caattaagccgaccgccatatagcgtggctat	CRISPR spacer
tacttaagccgaccgccatatagcgcggctat	Protospacer
.* **********************.******

17. spacer 1.15|1647835|31|NC_023134|CRISPRCasFinder matches to NZ_CP019720 (Paenibacillus larvae subsp. larvae strain Eric_V plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.871

aattaagccgaccgccatatagcgtggctat	CRISPR spacer
cttaaagccgaccgccatatagcgcggctat	Protospacer
  * ********************.******

18. spacer 1.16|1647834|32|NC_023134|CRT matches to NZ_CP019720 (Paenibacillus larvae subsp. larvae strain Eric_V plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

caattaagccgaccgccatatagcgtggctat	CRISPR spacer
acttaaagccgaccgccatatagcgcggctat	Protospacer
   * ********************.******

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 114492 : 182173 53 Paenibacillus_phage(31.82%) transposase,integrase,protease attL 178628:178644|attR 189519:189535
DBSCAN-SWA_2 215942 : 290822 59 Paenibacillus_phage(26.32%) transposase,bacteriocin NA
DBSCAN-SWA_3 308301 : 454172 119 Paenibacillus_phage(32.43%) tRNA,transposase,integrase attL 311196:311255|attR 381586:382974
DBSCAN-SWA_4 457711 : 518035 50 Paenibacillus_phage(43.75%) transposase,protease NA
DBSCAN-SWA_5 527104 : 591467 58 Paenibacillus_phage(52.94%) tRNA,transposase,bacteriocin NA
DBSCAN-SWA_6 632969 : 721703 85 Paenibacillus_phage(65.52%) holin,transposase,coat,integrase attL 632848:632907|attR 664048:665437
DBSCAN-SWA_7 732377 : 803228 49 Paenibacillus_phage(41.67%) holin,transposase,tRNA NA
DBSCAN-SWA_8 807923 : 818578 9 Mollivirus(25.0%) NA NA
DBSCAN-SWA_9 826923 : 871206 56 Paenibacillus_phage(42.86%) holin,transposase,integrase attL 824555:824569|attR 830569:830583
DBSCAN-SWA_10 878169 : 921995 33 Paenibacillus_phage(53.85%) transposase NA
DBSCAN-SWA_11 1002814 : 1097068 101 Paenibacillus_phage(63.64%) tRNA,transposase,protease,coat,terminase,integrase attL 1031798:1031857|attR 1077319:1078707
DBSCAN-SWA_12 1130489 : 1186888 55 Paenibacillus_phage(35.71%) transposase,integrase attL 1130370:1130429|attR 1185545:1186932
DBSCAN-SWA_13 1226341 : 1270561 42 uncultured_Mediterranean_phage(25.0%) transposase,protease NA
DBSCAN-SWA_14 1341017 : 1415241 56 Paenibacillus_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_15 1576069 : 1630272 52 Paenibacillus_phage(66.67%) tRNA,transposase NA
DBSCAN-SWA_16 1635922 : 1685436 55 Paenibacillus_phage(50.0%) transposase NA
DBSCAN-SWA_17 1720524 : 1835775 58 Paenibacillus_phage(42.11%) transposase NA
DBSCAN-SWA_18 1882527 : 1940440 47 Paenibacillus_phage(73.33%) transposase,bacteriocin NA
DBSCAN-SWA_19 1945561 : 2019345 41 Paenibacillus_phage(46.67%) transposase NA
DBSCAN-SWA_20 2050652 : 2102816 40 Paenibacillus_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_21 2194979 : 2249515 59 Paenibacillus_phage(39.13%) tRNA,transposase,integrase,protease attL 2233900:2233914|attR 2249529:2249543
DBSCAN-SWA_22 2327959 : 2418164 101 Paenibacillus_phage(43.14%) tail,transposase,plate NA
DBSCAN-SWA_23 2505458 : 2570952 54 Paenibacillus_phage(28.57%) tRNA,transposase,protease NA
DBSCAN-SWA_24 2589666 : 2646057 44 Paenibacillus_phage(50.0%) tRNA,transposase,coat NA
DBSCAN-SWA_25 2649110 : 2704948 73 Paenibacillus_phage(93.75%) transposase,portal,tail,terminase,integrase attL 2672149:2672162|attR 2704978:2704991
DBSCAN-SWA_26 2846227 : 2907876 58 Paenibacillus_phage(20.0%) tail,tRNA,transposase,protease NA
DBSCAN-SWA_27 2949039 : 3009357 60 uncultured_Caudovirales_phage(15.38%) holin,transposase,coat,protease NA
DBSCAN-SWA_28 3070515 : 3194245 105 Paenibacillus_phage(44.83%) tRNA,transposase,integrase,protease attL 3129292:3129351|attR 3194219:3195657
DBSCAN-SWA_29 3212498 : 3234733 23 Paenibacillus_phage(50.0%) transposase,integrase attL 3213999:3214014|attR 3237777:3237792
DBSCAN-SWA_30 3274571 : 3318846 33 Paenibacillus_phage(44.44%) tRNA,transposase NA
DBSCAN-SWA_31 3360841 : 3423312 53 Paenibacillus_phage(50.0%) transposase NA
DBSCAN-SWA_32 3500488 : 3608353 97 Paenibacillus_phage(29.17%) tRNA,transposase,protease,holin,bacteriocin,integrase attL 3555515:3555574|attR 3572778:3574168
DBSCAN-SWA_33 3621595 : 3679151 59 Paenibacillus_phage(37.5%) tRNA,transposase NA
DBSCAN-SWA_34 3685843 : 3751941 52 Paenibacillus_phage(53.33%) tRNA,transposase NA
DBSCAN-SWA_35 3936222 : 4004152 56 Paenibacillus_phage(33.33%) tRNA,transposase,bacteriocin NA
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NC_023134.1|WP_024094640.1|2668472_2668724_-|hypothetical-protein 2668472_2668724_- 83 aa aa NA NA NA 2649110-2704948 yes