CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP006579	Aeromonas hydrophila 4AK4 chromosome, complete genome	23 crisprs	WYL,DinG,csa3,DEDDh,cas3	0	1	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP006579_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006579_1

301593-301699

Orphan

Consensus_repeat	Method
CGCCGAGCGTGTGCGTCAGCTTGAGAAGAACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006579_1

>merge|NZ_CP006579|1|301593-301699|CRISPRCasFinder
CGCCGAGCGTGTGCGTCAGCTTGAGAAGAACGCACTCAAGAAGCTGAAGGATGCGATGGCCGCCTGAGGGCATTCGCCGAGCCTGTGCGTCAGCTTGAGAAGAACGC

>NZ_CP006579|1|1|301593-301699|CRISPRCasFinder
CGCCGAGCGTGTGCGTCAGCTTGAGAAGAACGC	ACTCAAGAAGCTGAAGGATGCGATGGCCGCCTGAGGGCATT
CGCCGAGCCTGTGCGTCAGCTTGAGAAGAACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006579.1\|WP_025325418.1\|295784_296414_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|236793
NZ_CP006579.1\|WP_025325428.1\|309066_310164_-\|calcium:proton-antiporter	unknown	unknown	gnl\|CDD\|182580
NZ_CP006579.1\|WP_005323432.1\|299385_300339_+\|cell-division-protein-FtsX	unknown	unknown	gnl\|CDD\|182910
NZ_CP006579.1\|WP_025325417.1\|295352_295667_-\|DUF1145-domain-containing-protein	unknown	unknown	gnl\|CDD\|226299
NZ_CP006579.1\|WP_025325422.1\|301861_302521_+\|carbonate-dehydratase	unknown	unknown	gnl\|CDD\|238448
NZ_CP006579.1\|WP_025325423.1\|302532_303237_+\|histidine-utilization-repressor	unknown	unknown	gnl\|CDD\|188194
NZ_CP006579.1\|WP_193353982.1\|291075_291237_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025325427.1\|307330_308863_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
NZ_CP006579.1\|WP_025325431.1\|314379_315327_-\|1-aminocyclopropane-1-carboxylate-deaminase/D-cysteine-desulfhydrase	unknown	unknown	gnl\|CDD\|225313
NZ_CP006579.1\|WP_025325420.1\|298616_299288_+\|cell-division-ATP-binding-protein-FtsE	unknown	unknown	gnl\|CDD\|225438
NZ_CP006579.1\|WP_025325425.1\|304620_305559_+\|formimidoylglutamase	unknown	unknown	gnl\|CDD\|237500
NZ_CP006579.1\|WP_148297603.1\|294949_295315_+\|YijD-family-membrane-protein	unknown	unknown	gnl\|CDD\|236832
NZ_CP006579.1\|WP_025325426.1\|305625_307329_+\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
NZ_CP006579.1\|WP_025325424.1\|303392_304628_+\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
NZ_CP006579.1\|WP_025325415.1\|294309_294930_+\|HTH-type-transcriptional-repressor-FabR	unknown	unknown	gnl\|CDD\|236881
NZ_CP006579.1\|WP_025325414.1\|293041_294160_-\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|224316
NZ_CP006579.1\|WP_025325419.1\|296525_298418_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_CP006579.1\|WP_025325430.1\|312399_314319_+\|RNase-E-specificity-factor-CsrD	unknown	unknown	gnl\|CDD\|236833
NZ_CP006579.1\|WP_025325413.1\|291312_292566_+\|phospholipase-D-family-protein	unknown	unknown	gnl\|CDD\|197210
NZ_CP006579.1\|WP_025325429.1\|310333_311863_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923

Protein	Function_ID	Function_description	E-value
NZ_CP006579.1\|WP_025325428.1\|309066_310164_-\|calcium:proton-antiporter	gnl\|CDD\|182580	PRK10599, PRK10599, sodium-potassium/proton antiporter ChaA.	2.43266e-100
NZ_CP006579.1\|WP_005323432.1\|299385_300339_+\|cell-division-protein-FtsX	gnl\|CDD\|182910	PRK11026, ftsX, cell division ABC transporter subunit FtsX; Provisional.	1.13138e-77
NZ_CP006579.1\|WP_025325417.1\|295352_295667_-\|DUF1145-domain-containing-protein	gnl\|CDD\|226299	COG3776, COG3776, Predicted membrane protein [Function unknown].	1.15655e-09
NZ_CP006579.1\|WP_025325422.1\|301861_302521_+\|carbonate-dehydratase	gnl\|CDD\|238448	cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	3.19406e-122
NZ_CP006579.1\|WP_025325423.1\|302532_303237_+\|histidine-utilization-repressor	gnl\|CDD\|188194	TIGR02018, Histidine_utilization_repressor, histidine utilization repressor, proteobacterial. This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators. [Energy metabolism, Amino acids and amines, Regulatory functions, DNA interactions].	2.81443e-96
NZ_CP006579.1\|WP_025325420.1\|298616_299288_+\|cell-division-ATP-binding-protein-FtsE	gnl\|CDD\|225438	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning].	2.40713e-125
NZ_CP006579.1\|WP_025325427.1\|307330_308863_+\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
NZ_CP006579.1\|WP_025325431.1\|314379_315327_-\|1-aminocyclopropane-1-carboxylate-deaminase/D-cysteine-desulfhydrase	gnl\|CDD\|225313	COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism].	3.1428e-57
NZ_CP006579.1\|WP_025325418.1\|295784_296414_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|236793	PRK10909, rsmD, 16S rRNA m(2)G966-methyltransferase; Provisional.	9.2402e-95
NZ_CP006579.1\|WP_025325425.1\|304620_305559_+\|formimidoylglutamase	gnl\|CDD\|237500	PRK13776, PRK13776, formimidoylglutamase; Provisional.	2.3123e-180
NZ_CP006579.1\|WP_148297603.1\|294949_295315_+\|YijD-family-membrane-protein	gnl\|CDD\|236832	PRK11056, PRK11056, YijD family membrane protein.	9.86537e-48
NZ_CP006579.1\|WP_025325426.1\|305625_307329_+\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
NZ_CP006579.1\|WP_025325424.1\|303392_304628_+\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
NZ_CP006579.1\|WP_025325415.1\|294309_294930_+\|HTH-type-transcriptional-repressor-FabR	gnl\|CDD\|236881	PRK11202, PRK11202, HTH-type transcriptional repressor FabR.	2.40491e-131
NZ_CP006579.1\|WP_025325414.1\|293041_294160_-\|fatty-acid-desaturase	gnl\|CDD\|224316	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism].	1.58586e-82
NZ_CP006579.1\|WP_025325419.1\|296525_298418_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0
NZ_CP006579.1\|WP_025325430.1\|312399_314319_+\|RNase-E-specificity-factor-CsrD	gnl\|CDD\|236833	PRK11059, PRK11059, regulatory protein CsrD; Provisional.	0
NZ_CP006579.1\|WP_025325413.1\|291312_292566_+\|phospholipase-D-family-protein	gnl\|CDD\|197210	cd09111, PLDc_ymdC_like_1, Putative catalytic domain, repeat 1, of Escherichia coli uncharacterized protein ymdC and similar proteins. Putative catalytic domain, repeat 1, of Escherichia coli uncharacterized protein ymdC and similar proteins. In Escherichia coli, there are two genes, f413 (ybhO) and o493 (ymdC), which are homologous to gene cls that encodes the Escherichia coli cardiolipin (CL) synthase. The prototype of this subfamily is an uncharacterized protein ymdC specified by the o493 (ymdC) gene. Although the functional characterization of ymdC and similar proteins remains unknown, members of this subfamily show high sequence homology to bacterial CL synthases, which catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. Moreover, ymdC and its similar proteins contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characteriszes the phospholipase D (PLD) superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer.	6.54241e-73
NZ_CP006579.1\|WP_025325429.1\|310333_311863_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	7.56557e-81

>NZ_CP006579.1|WP_005323432.1|299385_300339_+|cell-division-protein-FtsX
MAIVRHKQPPLRRLMMYGVDHVRQAFASLGELWRNPLASLMTLAVLGVSLALPSCFHVLLKNAEVVEGSWQTSSQISLYLRKDLPEQSILDMKQRILLYPEVESVTYMNRDEALKEFREISGFGDALDYLDSNPLPPVLSVIPDPRWQNPEGAAELLAKLENEPGIEQGKLDLQWLTRLQGIMNLLRHTITGIAVLLLSAVLLIVGNTLRLNILNQRSEIEVLKLVGATDAFIHRPFLYTGIWFGVIGGMLAWWLTEVMVIWSEGVVKELAGLYNSNFRLVGMGAFDGFNLILLGALLGLIASWFSVHRHIRDIEPS
>NZ_CP006579.1|WP_025325420.1|298616_299288_+|cell-division-ATP-binding-protein-FtsE
MIRFDKVSKVYSGGHQALQKVSFHLRKGEMAFLTGHSGAGKSTLLKLISVMERPTDGRVFFHGDDVSQIKRSQIPYVRRQIGMIFQDHRLLMDRTVFDNVALPLVIDGYSHADINKRVAAALDKVGLLGKERYQPRMLSGGEQQRVGIARAIVNKPPLLLADEPTGNLDPQLSMDIMRLFEEFNRFGVSVLIATHDLGLIARMRYRTLTLKAGRMYSQEQEES
>NZ_CP006579.1|WP_025325419.1|296525_298418_+|signal-recognition-particle-docking-protein-FtsY
MAKGLFSWLGFGRKKEEAEAVQSQVPDATPAVAESEATAAPAPVADVSLTEAPAVPHEAPLAIPDEGPLVVEEPASELEPVIVNEALITAEAEAQAAEAARIAAEAEAAEAARVAAEAEAAEAARVAAEAEAAEAARVAAEAQAAEAARVAAEAQAAEAARIAAEAEAAEAARVVAEAEAAETARIAAEAQAVEAARVAAEAEAAEAARVAAEAEAAEAARVAAEAQAAEAARVAAEARAAEEARIAAEARAAEEARIAAEARAAEEARIAAEALAAEEARIAKEAQRAEDLRLVAEMEAEAAALAALPLAAKVDDDTQEKPQREGFFARLKRSLVRTRENIGSGFFGLFRGKKIDDELFEELETQLLTADLGVDTTSRIIEGLVQHADRKQLKDAEALYGLLKQDMGAMLTQVEQPLVIDTSKKPYVILMVGVNGVGKTTTIGKLAKQFQADGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIYDAIEAARSRGADVLIADTAGRLQNKSNLMEELKKVVRVMKKLDEEAPHEIMLTLDAGTGQNALSQAKLFSEAVGLTGITLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVANDFIEALFSREE
>NZ_CP006579.1|WP_025325418.1|295784_296414_-|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MPRVKSSRNSPSKSPAPQGRAGVVRIISGQWKGRKLPVRDVDGLRPTTDRVKETIFNWLAPHVRGARCLDLFAGSGGLGLEALSRYAERVTLVEMDKGAADQLRKNLAALGSQQGEVIQADAVSWLQGPATPFDLVFLDPPFRRELLPQVCELLEQRGWLAPDALIYLEREKEMSDLPLPASWQQLKDKQAGQVCYQLYLRDTKDDAAV
>NZ_CP006579.1|WP_025325417.1|295352_295667_-|DUF1145-domain-containing-protein
MKRVFNLLAMGVLLFFWLGVVLALLGTLPGKLNGFLPVCGVIVILMHWVQASMIKAACKPYFAITRLEFTQVLIFGVFGMMEIRAKLQAIIDARQRGETPPRAD
>NZ_CP006579.1|WP_148297603.1|294949_295315_+|YijD-family-membrane-protein
MHESNAIPKMPLLLALLIGICGDAFLSVLTESVVPFSFFPLIALLLAAYQLYQHYRHEPIVGNTPSCILLCFFIGVFGHTALLKVQYPELGSNFFSLIAMLLLLAVLSIKLGISLGKKVKE
>NZ_CP006579.1|WP_025325415.1|294309_294930_+|HTH-type-transcriptional-repressor-FabR
MGIRAQQKEKTRRTLIEAAFSQLCANRSFSNLSLREVAREAGIAPTSFYRHFRDMEELGLTLVDEGGLTLRQLMRQARQRIAGGGSVISTSVQTFMEFVENNPNIFRLLLRERSGTSAAFRQAVAREIQHFIAELTDYLEATTQAPREEAYIQAEAMVTIVFSAGADALDMTPEECRALSERTISQLRMIAMGAEVQNRKRRESLS
>NZ_CP006579.1|WP_025325414.1|293041_294160_-|fatty-acid-desaturase
MDRPPIIMTNTLLFALSGLTALIAVPWYGLTHGYDFWQWGSFLLLFCYCGISITAGYHRLWSHKAYKAHPALQWIFAIGGALALQNSVLHWSSDHRRHHRHVDDNQKDPYSAGRGFWYSHIGWMLREYQRETYHDYSNVRDLQNNAIVAFQHRHYLALTLATNIGIPLLLGLIHGDLLGMLLLAGVLRMVMTHHTTFFINSLAHIWGDQPFTDRNSARDNGILAFFTFGEGYHNFHHLFENDYRNGIRWWQFDPTKWLIRTAAWCGLAGDLRSCPEERIEQARLEMQLKRAQARLRKAEDRELWQALLQEEYDKLSLQIQHYYASRKLLLEQRKRKALARYDRLKLQLEYRNLRDGFLVAKRNWSRLLAGIA
>NZ_CP006579.1|WP_025325413.1|291312_292566_+|phospholipase-D-family-protein
MIPAEFALLDDPGAALKARCQLIRGARSRIQAQYYSWEEDSSGKLLLSELLHAARRGVRVQLLIDDLYAGDNRFLEVVAAEPGIEVRLFNPFWLRGWRPLTLLLEGLLSFRRINHRMHNKLLLVDGHEAVIGGRNIGDRYFGLGAPPHFVDLDLVCRGPLCRQAEQGFELFWRSRWSHPIRRLLRRPLLPAEIRVVNDFLLTLTDPAVAMVYDLPASLFDEAPLPLRWHPGGGECWFDRPGKGLISRPTTAPRLGRKLAGNQGGLWLVSPYLILTRSLRRHLKRQRQAGVGIEILTNSLASTDVPLVYGVYRRHRPWLERQGIVLAELSDEAHSLHAKLILMGEEEALLGSFNLDPRSLMLNTELMLHLSCPALCAELRHWLCGWQRAAVHPVVAPPSTLRRLLARLSDWLPLRPWL
>NZ_CP006579.1|WP_193353982.1|291075_291237_-|hypothetical-protein
MEVRDHPYLSQRPQASQPDPTPARLLTPWYQQHRDQGWEAFPFTPEDGLPDRH
>NZ_CP006579.1|WP_025325422.1|301861_302521_+|carbonate-dehydratase
MKLLNDLFTNNREWAERIKAEDPDFFATLSAQQAPEYLWIGCSDSRVPANQLMGLLPGDVFVHRNVANLVVHTDFNCLSVLQYAVEVLKVKHIIVCGHYGCGGVKAAMQNQELGLIDNWLRNIKDVYFKYGEQLEAIEDEHERFDYLCELNVAEQVANVCHTTIIQNAWRKGQELAVHGWIYGIKDGLLHDLDLCISGPDQIPDVYRAWPDMRPPHRRR
>NZ_CP006579.1|WP_025325423.1|302532_303237_+|histidine-utilization-repressor
MAPALYLQIKQHILDGIRERHYQAGDRIPTEAALCEQFAVSRMTVNKALRELVAEGWLNRTAGSGSFVADRRAESPLLAIRNIADEIAERGSQYSARVIRLQCQAADEKVAVRLGLRVGAPTFHSLIVHQADGEPLQLEERFVDAERLPGYGEQDFTKQTPNSYLMEVCPLSEMEHVVEAVLPSAGEAGLLQVRVDTPCLLLHRRTWSDGFLVSYARLLSPGSRYKLSSKTRLA
>NZ_CP006579.1|WP_025325424.1|303392_304628_+|imidazolonepropionase
MNKELLNCERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGPHPAHWRDMKGRLVTPGLIDCHTHLIFAGSRAEEFELRQQGVPYSDIARKGGGILSTVRATRAASEDQLYELAVPRIKSLIREGVTTVEIKSGYGLTLADELKMLRVARRLGEALPIRVKTTLLAAHAVPPEYRDDPDSWVETICQEIIPAAAEAGLADAVDVFCEHIGFSLAQTEQVYLAADQYNLAVKGHMDQLSNLGGSTLAANFGALSVDHLEYLDQDGIQALAHRGVVATLLPTAFYFLKETKLPPVAALRKAGVPMAVSSDINPGTAPIVSLRMAMNMACTLFGLTPVEAMAGVTRHAARALGEQERLGQLRVGMQADFLVWNCAHPSEISYLIGVDQLVSRVLNGEETLHG
>NZ_CP006579.1|WP_025325425.1|304620_305559_+|formimidoylglutamase
MDKFNMADMSVWQGRQDPEDGELALRWHNKVQPWQADSEPGVVLLGFACDEGVRRNKGRVGAAAAPLAVRKLLANTAWHLGQPVHDGGDVACEDGDLDAAHDRLAERVARALDLGHFPLVLGGGHEVAFGSWSGLNRHLGGKGRVGIINFDAHFDLRMKQEQASSGTPFFQIAEQCAAQGTAFHYACLGVAETANTAALFARAEALGVWHVLDEAMTQAELPVLLAGLDAFIARCDHLYLTIDLDVLPANLMPGVSAPAARGVELAVIEPLIAHIRASGKLRLADLAEYNPSLDLDNRSARVAARLVHQLTK
>NZ_CP006579.1|WP_025325426.1|305625_307329_+|urocanate-hydratase
MSVQHQDPRHDPSRVIRAPRGTELTAKSWLTEAPLRMLMNNLDPEVAEHPQSLVVYGGIGRAARNWACYDKIVEVLTRLEEDQTLLVQSGKPVGVFQTHKDAPRVLIANSNLVPHWANWEHFNELDKKGLMMYGQMTAGSWIYIGTQGIVQGTYETFFAVANQHFNGEPKGRWILTGGLGGMGGAQPLAATMAGFSMIAVECDETRIDFRLKTRYVDKKAHSLDEALAMVEEAKRSGSAVSVGLLGNAADVFTELVARGITPDVVTDQTSAHDPIHGYLPQGWSVAQWRELQKSAPQEVNQAARHSMARQVEAMLTLQARGAATLDYGNNIRQMALEEGVKNAFDFPGFVPAYIRPLFCEGIGPFRWVALSGDPEDIYKTDQKVKELIPDDPHLHNWLDMARERIAFQGLPARICWVGVKDRVRLGLAFNEMVKNGELKAPVVIGRDHLDSGSVASPNRETESMMDGSDAVSDWPLLNAMLNTAGGATWVSLHHGGGVGMGFSQHSGVVIVCDGSDDAAKRVGRVLRNDPATGVMRHADAGYEIAINCAHEAKLDLPMLDASGKGVK
>NZ_CP006579.1|WP_025325427.1|307330_308863_+|histidine-ammonia-lyase
MFELNLQPGKLCLNTLRRVSREPVHLSLDSSALPGIHASAAVVTKVIEQNRVVYGINTGFGLLANTRIPVEQLDELQRSIVLSHAAGIGEYMDDATVRLMMVLKVNSLARGFSGIRLTVLEALMTLINAEVYPVVPKKGSVGASGDLAPLAHMSCLLIGEGKARHKGELIDAATALKIAGLEPIALAPKEGLALLNGTQASTAFALEGLFHAEDLFAGAITIGAMSVEAALGSRRPFDARIHEVRGQRGQIDAAACYRHLLVDGSEIGMSHHNCEKVQDPYSLRCQPQVMGACLAQIRHAAEVLVCEANAVSDNPLVFAEDEEILSGGNFHAEPVAFAADNLALAIAEIGSLSERRMALLIDSRMSGLPAFLVNNGGVNSGFMIAQVTSAALASENKTLAHPASVDSLPTSANQEDHVSMATFAGRRLADMAENTRGILAVELLAAAQGLDFRAPLRSTALIELAKGRLREEVSFYDKDRYFSPDIEAAAALLGRASYNDLIPAGVLPSL
>NZ_CP006579.1|WP_025325428.1|309066_310164_-|calcium:proton-antiporter
MKSFIRQEIALPVGLLTLLFFKTLGSDLLTEATPLAVYLPVSLALLAIVTWAIFSVVRHSDALAIKLGEPFGTLILTLSVISLEVVMISSVMLTGDPNPTMARDTMFAVVMLVTNGLVGFTLLFGGWRYHTQNFNLDGVKSYLVAIIPLALLCLVLPNFTRGGTLGSMSSAMSWMLIIISVLLYGVFLLIQTRSHSHFFVDSDHEDHEEHHGILRSNVYHTLLLLAYLVVVILLAKTLAIPINYGVHVLEAPAALGGFIVACIVLAPEAVGAIKAAFNNQLQRAMNLYFGSVLATIALTVPSVLFIGSLLGQEVRLGLSPADMVLLITTLMVCKVTFSSGRTNVLHGATHLVLFVVYLFLMFEHE
>NZ_CP006579.1|WP_025325429.1|310333_311863_-|EAL-domain-containing-protein
MRRASPFWISLLLLCLPVLASLPLSQLLGNPLAHQLLQQKKTQIEAALAERHEALDQSIRSQLSRFAFDCGPADMTLLRAPRFYSRHIRLQGLKLASGGGCSSLGEDFPLASVELPPYPEQEQFGLAATQARFNTEQEVVAYYRKGDNIAYWVLNNSWSHDQLQSPCPSCFYLEFSQQSPGKVTTFFPRGDQSIKQEPGNQSLSFSSPDPQIRQTLWAGKALEEYAKRQARHYGLLYGGALGLLLVAAYWVLRNYRRSLKGLLLAALVRREFVPFYQPIVDSRSKKVVGFEALLRWQRGRELVPPGTFIAYAEEQGLILPMTEQLLERVIADLPWLEPTQWVSVNIVAAHLEQPHLRHLLQRHDWPSPARLTFELTERKPITDIKAAMGEIAQHQAKGYHFKLDDFGTGYGGFAYLQRLGIRQIKIDKMFVDTIGTDDLKRTLLDSIIAFGRESDMEMIAEGVETQEQVDYLHRHGVHLIQGYVYAKPMALHKLKIWLLAWRQSQPGGQ
>NZ_CP006579.1|WP_025325430.1|312399_314319_+|RNase-E-specificity-factor-CsrD
MKLTTQLVSFITLCVIAAMAVVMLGGVFSFRQMGMELQQNRVDSLVEIIDKQLGVTDDQQALARWLPSLLRASHVVELEIRQDSQRVYWFRDVQQQTDESLLIPYSKAIPNQVGMQAEFKLDRPFKEFEYSMQAMFGISLGVFIVVFGLWYSIRWLRQQLRGAELLAERAQLILDGKLTKLAHDPADEWPASASQALTHLLAELADARKERSRFDNFIRSNAFVDKTTGIGNRLFFDNRLENAIMEASVISGGVLLIELAGLEELDPELSGRPSQDLLMEASASIGTFVRKHSGALQARYAGQVFAVLLPNMSESEMVDGASQLLKSLQRLHWPESVNLETAVYLGAVCYQAEDSLLKVQEEAELALKSARLQGHSGWFLYEKSLDEEASNKGTVRWRTLINRRIEEQGISFYLQSVQQERDQVVLQQELLIRLHDEQGRELQAGVFMPMAEKAGLLLPLDRLVVTQTLRLLRQRPESSCPVSLSLSAQNLLNREFQRELFFELFQLPRSINEGLILQLSESQVTRHYEALKRPLRALRMLGCRLAIDHAGQDVVSTQYIKEFEIHFLKLHPSLVREIHLRQVNQMAVRSLVGGCANTQARVIAVGVESGDEWKMLRHLGVHAGQGPWFAEPERLLMPA
>NZ_CP006579.1|WP_025325431.1|314379_315327_-|1-aminocyclopropane-1-carboxylate-deaminase/D-cysteine-desulfhydrase
MTNDALTAKRAPLGDAILAPAQLPSPLHPVHHPLLDAQGVRLWCKRDDLIHPTLSGNKWRKLKYHLQQAQAQGKTHLLSFGGAYSNHIHALAAAGLRSGLRTTGIIRGEADTVSNATLSAAKGWGMDLVFVDRQSYRLRQDPDWLAQFEAPDTLIVPEGGSSPLAIPGVAELVAEVPFSPDLWVLPCASGGTLAGLIAGKREREQILAIAVLKGGAFLHDEVCRLNPAAATTDGWRIAQEHHDGGYARFSPALWQWVQAFSAHTGLPLEPIYSGKAMWGLFRELAAGRIPRGSQVVFIHTGGLQGLAGLREQGRL

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Crispr_ID: NZ_CP006579_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006579_2

308959-309060

Orphan

Consensus_repeat	Method
AACAGCTAGATCACGAACAGTACCCGCTGAGCGCTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006579_2

>merge|NZ_CP006579|2|308959-309060|CRISPRCasFinder
AACAGCTAGATCACGAACAGTACCCGCTGAGCGCTGGCGCCAGTTATTCGTGCTCGAACATCAGTAACAGCTAGACCACGAACAGTACCCGCTGAGCGCTGG

>NZ_CP006579|2|2|308959-309060|CRISPRCasFinder
AACAGCTAGATCACGAACAGTACCCGCTGAGCGCTGG	CGCCAGTTATTCGTGCTCGAACATCAGT
AACAGCTAGACCACGAACAGTACCCGCTGAGCGCTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006579.1\|WP_025325428.1\|309066_310164_-\|calcium:proton-antiporter	unknown	unknown	gnl\|CDD\|182580
NZ_CP006579.1\|WP_025325433.1\|316479_317073_+\|PilN-domain-containing-protein	unknown	unknown	gnl\|CDD\|377469
NZ_CP006579.1\|WP_005323432.1\|299385_300339_+\|cell-division-protein-FtsX	unknown	unknown	gnl\|CDD\|182910
NZ_CP006579.1\|WP_025325435.1\|317712_318027_+\|MSHA-biogenesis-protein-MshK	unknown	unknown	gnl\|CDD\|274166
NZ_CP006579.1\|WP_025325429.1\|310333_311863_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP006579.1\|WP_025325436.1\|318097_319777_+\|pilus-(MSHA-type)-biogenesis-protein-MshL	unknown	unknown	gnl\|CDD\|274176
NZ_CP006579.1\|WP_025325421.1\|300804_301659_+\|RNA-polymerase-sigma-factor-RpoH	unknown	unknown	gnl\|CDD\|235838
NZ_CP006579.1\|WP_025325422.1\|301861_302521_+\|carbonate-dehydratase	unknown	unknown	gnl\|CDD\|238448
NZ_CP006579.1\|WP_025325423.1\|302532_303237_+\|histidine-utilization-repressor	unknown	unknown	gnl\|CDD\|188194
NZ_CP006579.1\|WP_025325432.1\|315396_316260_+\|MSHA-biogenesis-protein-MshI	unknown	unknown	gnl\|CDD\|227306
NZ_CP006579.1\|WP_025325427.1\|307330_308863_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
NZ_CP006579.1\|WP_025325431.1\|314379_315327_-\|1-aminocyclopropane-1-carboxylate-deaminase/D-cysteine-desulfhydrase	unknown	unknown	gnl\|CDD\|225313
NZ_CP006579.1\|WP_025325437.1\|319940_320831_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|132060
NZ_CP006579.1\|WP_025325434.1\|317072_317720_+\|MSHA-biogenesis-protein-MshJ	unknown	unknown	gnl\|CDD\|309474
NZ_CP006579.1\|WP_025325425.1\|304620_305559_+\|formimidoylglutamase	unknown	unknown	gnl\|CDD\|237500
NZ_CP006579.1\|WP_025325426.1\|305625_307329_+\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
NZ_CP006579.1\|WP_025325424.1\|303392_304628_+\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
NZ_CP006579.1\|WP_025325420.1\|298616_299288_+\|cell-division-ATP-binding-protein-FtsE	unknown	unknown	gnl\|CDD\|225438
NZ_CP006579.1\|WP_025325419.1\|296525_298418_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_CP006579.1\|WP_025325430.1\|312399_314319_+\|RNase-E-specificity-factor-CsrD	unknown	unknown	gnl\|CDD\|236833

Protein	Function_ID	Function_description	E-value
NZ_CP006579.1\|WP_025325428.1\|309066_310164_-\|calcium:proton-antiporter	gnl\|CDD\|182580	PRK10599, PRK10599, sodium-potassium/proton antiporter ChaA.	2.43266e-100
NZ_CP006579.1\|WP_025325433.1\|316479_317073_+\|PilN-domain-containing-protein	gnl\|CDD\|377469	pfam05137, PilN, Fimbrial assembly protein (PilN).	0.00181068
NZ_CP006579.1\|WP_005323432.1\|299385_300339_+\|cell-division-protein-FtsX	gnl\|CDD\|182910	PRK11026, ftsX, cell division ABC transporter subunit FtsX; Provisional.	1.13138e-77
NZ_CP006579.1\|WP_025325435.1\|317712_318027_+\|MSHA-biogenesis-protein-MshK	gnl\|CDD\|274166	TIGR02500, Yop_proteins_translocation_protein_D, type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0.0017221
NZ_CP006579.1\|WP_025325429.1\|310333_311863_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	7.56557e-81
NZ_CP006579.1\|WP_025325436.1\|318097_319777_+\|pilus-(MSHA-type)-biogenesis-protein-MshL	gnl\|CDD\|274176	TIGR02519, related_to_type_II_protein_secretion_protein, pilus (MSHA type) biogenesis protein MshL. Members of this family are predicted secretins, that is, outer membrane pore proteins associated with delivery of proteins from periplasm to the outside of the cell. Related families include GspD of type II secretion (TIGR02517), the YscC/HrcC family from type III secretion (TIGR02516), and the PilQ secretin of type IV pilus formation (TIGR02515). Members of this family are found in gene clusters associated with MSHA (mannose-sensitive hemagglutinin) and related pili, and appear to be the secretin of this pilus system. [Cell envelope, Surface structures].	1.20498e-87
NZ_CP006579.1\|WP_025325421.1\|300804_301659_+\|RNA-polymerase-sigma-factor-RpoH	gnl\|CDD\|235838	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed.	0
NZ_CP006579.1\|WP_025325422.1\|301861_302521_+\|carbonate-dehydratase	gnl\|CDD\|238448	cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	3.19406e-122
NZ_CP006579.1\|WP_025325423.1\|302532_303237_+\|histidine-utilization-repressor	gnl\|CDD\|188194	TIGR02018, Histidine_utilization_repressor, histidine utilization repressor, proteobacterial. This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators. [Energy metabolism, Amino acids and amines, Regulatory functions, DNA interactions].	2.81443e-96
NZ_CP006579.1\|WP_025325432.1\|315396_316260_+\|MSHA-biogenesis-protein-MshI	gnl\|CDD\|227306	COG4972, PilM, Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion].	8.98748e-06
NZ_CP006579.1\|WP_025325427.1\|307330_308863_+\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
NZ_CP006579.1\|WP_025325431.1\|314379_315327_-\|1-aminocyclopropane-1-carboxylate-deaminase/D-cysteine-desulfhydrase	gnl\|CDD\|225313	COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism].	3.1428e-57
NZ_CP006579.1\|WP_025325437.1\|319940_320831_+\|AAA-family-ATPase	gnl\|CDD\|132060	TIGR03015, pepcterm_ATPase, putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. [Protein fate, Protein and peptide secretion and trafficking].	2.7047e-75
NZ_CP006579.1\|WP_025325434.1\|317072_317720_+\|MSHA-biogenesis-protein-MshJ	gnl\|CDD\|309474	pfam04350, PilO, Pilus assembly protein, PilO. PilO proteins are involved in the assembly of pilin. However, the precise function of this family of proteins is not known.	0.00405351
NZ_CP006579.1\|WP_025325425.1\|304620_305559_+\|formimidoylglutamase	gnl\|CDD\|237500	PRK13776, PRK13776, formimidoylglutamase; Provisional.	2.3123e-180
NZ_CP006579.1\|WP_025325426.1\|305625_307329_+\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
NZ_CP006579.1\|WP_025325424.1\|303392_304628_+\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
NZ_CP006579.1\|WP_025325420.1\|298616_299288_+\|cell-division-ATP-binding-protein-FtsE	gnl\|CDD\|225438	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning].	2.40713e-125
NZ_CP006579.1\|WP_025325419.1\|296525_298418_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0
NZ_CP006579.1\|WP_025325430.1\|312399_314319_+\|RNase-E-specificity-factor-CsrD	gnl\|CDD\|236833	PRK11059, PRK11059, regulatory protein CsrD; Provisional.	0

>NZ_CP006579.1|WP_025325427.1|307330_308863_+|histidine-ammonia-lyase
MFELNLQPGKLCLNTLRRVSREPVHLSLDSSALPGIHASAAVVTKVIEQNRVVYGINTGFGLLANTRIPVEQLDELQRSIVLSHAAGIGEYMDDATVRLMMVLKVNSLARGFSGIRLTVLEALMTLINAEVYPVVPKKGSVGASGDLAPLAHMSCLLIGEGKARHKGELIDAATALKIAGLEPIALAPKEGLALLNGTQASTAFALEGLFHAEDLFAGAITIGAMSVEAALGSRRPFDARIHEVRGQRGQIDAAACYRHLLVDGSEIGMSHHNCEKVQDPYSLRCQPQVMGACLAQIRHAAEVLVCEANAVSDNPLVFAEDEEILSGGNFHAEPVAFAADNLALAIAEIGSLSERRMALLIDSRMSGLPAFLVNNGGVNSGFMIAQVTSAALASENKTLAHPASVDSLPTSANQEDHVSMATFAGRRLADMAENTRGILAVELLAAAQGLDFRAPLRSTALIELAKGRLREEVSFYDKDRYFSPDIEAAAALLGRASYNDLIPAGVLPSL
>NZ_CP006579.1|WP_025325426.1|305625_307329_+|urocanate-hydratase
MSVQHQDPRHDPSRVIRAPRGTELTAKSWLTEAPLRMLMNNLDPEVAEHPQSLVVYGGIGRAARNWACYDKIVEVLTRLEEDQTLLVQSGKPVGVFQTHKDAPRVLIANSNLVPHWANWEHFNELDKKGLMMYGQMTAGSWIYIGTQGIVQGTYETFFAVANQHFNGEPKGRWILTGGLGGMGGAQPLAATMAGFSMIAVECDETRIDFRLKTRYVDKKAHSLDEALAMVEEAKRSGSAVSVGLLGNAADVFTELVARGITPDVVTDQTSAHDPIHGYLPQGWSVAQWRELQKSAPQEVNQAARHSMARQVEAMLTLQARGAATLDYGNNIRQMALEEGVKNAFDFPGFVPAYIRPLFCEGIGPFRWVALSGDPEDIYKTDQKVKELIPDDPHLHNWLDMARERIAFQGLPARICWVGVKDRVRLGLAFNEMVKNGELKAPVVIGRDHLDSGSVASPNRETESMMDGSDAVSDWPLLNAMLNTAGGATWVSLHHGGGVGMGFSQHSGVVIVCDGSDDAAKRVGRVLRNDPATGVMRHADAGYEIAINCAHEAKLDLPMLDASGKGVK
>NZ_CP006579.1|WP_025325425.1|304620_305559_+|formimidoylglutamase
MDKFNMADMSVWQGRQDPEDGELALRWHNKVQPWQADSEPGVVLLGFACDEGVRRNKGRVGAAAAPLAVRKLLANTAWHLGQPVHDGGDVACEDGDLDAAHDRLAERVARALDLGHFPLVLGGGHEVAFGSWSGLNRHLGGKGRVGIINFDAHFDLRMKQEQASSGTPFFQIAEQCAAQGTAFHYACLGVAETANTAALFARAEALGVWHVLDEAMTQAELPVLLAGLDAFIARCDHLYLTIDLDVLPANLMPGVSAPAARGVELAVIEPLIAHIRASGKLRLADLAEYNPSLDLDNRSARVAARLVHQLTK
>NZ_CP006579.1|WP_025325424.1|303392_304628_+|imidazolonepropionase
MNKELLNCERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGPHPAHWRDMKGRLVTPGLIDCHTHLIFAGSRAEEFELRQQGVPYSDIARKGGGILSTVRATRAASEDQLYELAVPRIKSLIREGVTTVEIKSGYGLTLADELKMLRVARRLGEALPIRVKTTLLAAHAVPPEYRDDPDSWVETICQEIIPAAAEAGLADAVDVFCEHIGFSLAQTEQVYLAADQYNLAVKGHMDQLSNLGGSTLAANFGALSVDHLEYLDQDGIQALAHRGVVATLLPTAFYFLKETKLPPVAALRKAGVPMAVSSDINPGTAPIVSLRMAMNMACTLFGLTPVEAMAGVTRHAARALGEQERLGQLRVGMQADFLVWNCAHPSEISYLIGVDQLVSRVLNGEETLHG
>NZ_CP006579.1|WP_025325423.1|302532_303237_+|histidine-utilization-repressor
MAPALYLQIKQHILDGIRERHYQAGDRIPTEAALCEQFAVSRMTVNKALRELVAEGWLNRTAGSGSFVADRRAESPLLAIRNIADEIAERGSQYSARVIRLQCQAADEKVAVRLGLRVGAPTFHSLIVHQADGEPLQLEERFVDAERLPGYGEQDFTKQTPNSYLMEVCPLSEMEHVVEAVLPSAGEAGLLQVRVDTPCLLLHRRTWSDGFLVSYARLLSPGSRYKLSSKTRLA
>NZ_CP006579.1|WP_025325422.1|301861_302521_+|carbonate-dehydratase
MKLLNDLFTNNREWAERIKAEDPDFFATLSAQQAPEYLWIGCSDSRVPANQLMGLLPGDVFVHRNVANLVVHTDFNCLSVLQYAVEVLKVKHIIVCGHYGCGGVKAAMQNQELGLIDNWLRNIKDVYFKYGEQLEAIEDEHERFDYLCELNVAEQVANVCHTTIIQNAWRKGQELAVHGWIYGIKDGLLHDLDLCISGPDQIPDVYRAWPDMRPPHRRR
>NZ_CP006579.1|WP_025325421.1|300804_301659_+|RNA-polymerase-sigma-factor-RpoH
MGTSLQRTMALIPQGSLEGYIQAVNSIPVLSAEEERELAMRLQQGGDLEAARQLVMSHLRFVVHVAKSYSGYGLPQADLVQEGNIGLMKAVKRFDPSVGVRLVSFAVHWIKAEIHEYVLRNWRMVKVATTKAQRKLFFNLRKSKKRLGWLNHEEVQAVAADLGVSAADVTEMEARMSNYDQAFDLVGDDEDEGGFAPVHYLEDKSSDLAATIENDNWDSHATRRLSAAMATLDERSQHIIRARWLDEESKTTLQELADNYGVSAERVRQLEKNALKKLKDAMAA
>NZ_CP006579.1|WP_005323432.1|299385_300339_+|cell-division-protein-FtsX
MAIVRHKQPPLRRLMMYGVDHVRQAFASLGELWRNPLASLMTLAVLGVSLALPSCFHVLLKNAEVVEGSWQTSSQISLYLRKDLPEQSILDMKQRILLYPEVESVTYMNRDEALKEFREISGFGDALDYLDSNPLPPVLSVIPDPRWQNPEGAAELLAKLENEPGIEQGKLDLQWLTRLQGIMNLLRHTITGIAVLLLSAVLLIVGNTLRLNILNQRSEIEVLKLVGATDAFIHRPFLYTGIWFGVIGGMLAWWLTEVMVIWSEGVVKELAGLYNSNFRLVGMGAFDGFNLILLGALLGLIASWFSVHRHIRDIEPS
>NZ_CP006579.1|WP_025325420.1|298616_299288_+|cell-division-ATP-binding-protein-FtsE
MIRFDKVSKVYSGGHQALQKVSFHLRKGEMAFLTGHSGAGKSTLLKLISVMERPTDGRVFFHGDDVSQIKRSQIPYVRRQIGMIFQDHRLLMDRTVFDNVALPLVIDGYSHADINKRVAAALDKVGLLGKERYQPRMLSGGEQQRVGIARAIVNKPPLLLADEPTGNLDPQLSMDIMRLFEEFNRFGVSVLIATHDLGLIARMRYRTLTLKAGRMYSQEQEES
>NZ_CP006579.1|WP_025325419.1|296525_298418_+|signal-recognition-particle-docking-protein-FtsY
MAKGLFSWLGFGRKKEEAEAVQSQVPDATPAVAESEATAAPAPVADVSLTEAPAVPHEAPLAIPDEGPLVVEEPASELEPVIVNEALITAEAEAQAAEAARIAAEAEAAEAARVAAEAEAAEAARVAAEAEAAEAARVAAEAQAAEAARVAAEAQAAEAARIAAEAEAAEAARVVAEAEAAETARIAAEAQAVEAARVAAEAEAAEAARVAAEAEAAEAARVAAEAQAAEAARVAAEARAAEEARIAAEARAAEEARIAAEARAAEEARIAAEALAAEEARIAKEAQRAEDLRLVAEMEAEAAALAALPLAAKVDDDTQEKPQREGFFARLKRSLVRTRENIGSGFFGLFRGKKIDDELFEELETQLLTADLGVDTTSRIIEGLVQHADRKQLKDAEALYGLLKQDMGAMLTQVEQPLVIDTSKKPYVILMVGVNGVGKTTTIGKLAKQFQADGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIYDAIEAARSRGADVLIADTAGRLQNKSNLMEELKKVVRVMKKLDEEAPHEIMLTLDAGTGQNALSQAKLFSEAVGLTGITLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVANDFIEALFSREE
>NZ_CP006579.1|WP_025325428.1|309066_310164_-|calcium:proton-antiporter
MKSFIRQEIALPVGLLTLLFFKTLGSDLLTEATPLAVYLPVSLALLAIVTWAIFSVVRHSDALAIKLGEPFGTLILTLSVISLEVVMISSVMLTGDPNPTMARDTMFAVVMLVTNGLVGFTLLFGGWRYHTQNFNLDGVKSYLVAIIPLALLCLVLPNFTRGGTLGSMSSAMSWMLIIISVLLYGVFLLIQTRSHSHFFVDSDHEDHEEHHGILRSNVYHTLLLLAYLVVVILLAKTLAIPINYGVHVLEAPAALGGFIVACIVLAPEAVGAIKAAFNNQLQRAMNLYFGSVLATIALTVPSVLFIGSLLGQEVRLGLSPADMVLLITTLMVCKVTFSSGRTNVLHGATHLVLFVVYLFLMFEHE
>NZ_CP006579.1|WP_025325429.1|310333_311863_-|EAL-domain-containing-protein
MRRASPFWISLLLLCLPVLASLPLSQLLGNPLAHQLLQQKKTQIEAALAERHEALDQSIRSQLSRFAFDCGPADMTLLRAPRFYSRHIRLQGLKLASGGGCSSLGEDFPLASVELPPYPEQEQFGLAATQARFNTEQEVVAYYRKGDNIAYWVLNNSWSHDQLQSPCPSCFYLEFSQQSPGKVTTFFPRGDQSIKQEPGNQSLSFSSPDPQIRQTLWAGKALEEYAKRQARHYGLLYGGALGLLLVAAYWVLRNYRRSLKGLLLAALVRREFVPFYQPIVDSRSKKVVGFEALLRWQRGRELVPPGTFIAYAEEQGLILPMTEQLLERVIADLPWLEPTQWVSVNIVAAHLEQPHLRHLLQRHDWPSPARLTFELTERKPITDIKAAMGEIAQHQAKGYHFKLDDFGTGYGGFAYLQRLGIRQIKIDKMFVDTIGTDDLKRTLLDSIIAFGRESDMEMIAEGVETQEQVDYLHRHGVHLIQGYVYAKPMALHKLKIWLLAWRQSQPGGQ
>NZ_CP006579.1|WP_025325430.1|312399_314319_+|RNase-E-specificity-factor-CsrD
MKLTTQLVSFITLCVIAAMAVVMLGGVFSFRQMGMELQQNRVDSLVEIIDKQLGVTDDQQALARWLPSLLRASHVVELEIRQDSQRVYWFRDVQQQTDESLLIPYSKAIPNQVGMQAEFKLDRPFKEFEYSMQAMFGISLGVFIVVFGLWYSIRWLRQQLRGAELLAERAQLILDGKLTKLAHDPADEWPASASQALTHLLAELADARKERSRFDNFIRSNAFVDKTTGIGNRLFFDNRLENAIMEASVISGGVLLIELAGLEELDPELSGRPSQDLLMEASASIGTFVRKHSGALQARYAGQVFAVLLPNMSESEMVDGASQLLKSLQRLHWPESVNLETAVYLGAVCYQAEDSLLKVQEEAELALKSARLQGHSGWFLYEKSLDEEASNKGTVRWRTLINRRIEEQGISFYLQSVQQERDQVVLQQELLIRLHDEQGRELQAGVFMPMAEKAGLLLPLDRLVVTQTLRLLRQRPESSCPVSLSLSAQNLLNREFQRELFFELFQLPRSINEGLILQLSESQVTRHYEALKRPLRALRMLGCRLAIDHAGQDVVSTQYIKEFEIHFLKLHPSLVREIHLRQVNQMAVRSLVGGCANTQARVIAVGVESGDEWKMLRHLGVHAGQGPWFAEPERLLMPA
>NZ_CP006579.1|WP_025325431.1|314379_315327_-|1-aminocyclopropane-1-carboxylate-deaminase/D-cysteine-desulfhydrase
MTNDALTAKRAPLGDAILAPAQLPSPLHPVHHPLLDAQGVRLWCKRDDLIHPTLSGNKWRKLKYHLQQAQAQGKTHLLSFGGAYSNHIHALAAAGLRSGLRTTGIIRGEADTVSNATLSAAKGWGMDLVFVDRQSYRLRQDPDWLAQFEAPDTLIVPEGGSSPLAIPGVAELVAEVPFSPDLWVLPCASGGTLAGLIAGKREREQILAIAVLKGGAFLHDEVCRLNPAAATTDGWRIAQEHHDGGYARFSPALWQWVQAFSAHTGLPLEPIYSGKAMWGLFRELAAGRIPRGSQVVFIHTGGLQGLAGLREQGRL
>NZ_CP006579.1|WP_025325432.1|315396_316260_+|MSHA-biogenesis-protein-MshI
MKSLFRRSPPSHQVGLLLASDRILLACVEPVPIFTSRAINGPHDWPKAMGELFAQHGLAKSKVRVALAASLYQQIQIDKPAVPDAEMAGALPWAIKDFVNEPVLQLAMDYVDLPTPPAGRPRINVLCVPKSRVQQLADAVNGVATLEAIVSDELAMTALYEADQTVRMLLWQPRGQELQLLVFYRGGLCFSRPLRGFVGFTGAHEPDQGMLDGLTLEIQRSLDYLAGQLKLPEPGQMQLAIGSPFIGTLVRHLEQAFGFPVSAMANKAVLAGVEYLCAYGAALGGER
>NZ_CP006579.1|WP_025325433.1|316479_317073_+|PilN-domain-containing-protein
MKHHINLYGAEFRPRRLWASLNQMALVWGGCLLLLVAATFFYGWQQRGVDRELAQVRALLDVQRSEASRLDAALARHQADGQLQQQLVNKREELAAKQALIRQLGSLSLQKSQGYASVMADLARLRDARLSLQRIEISDGHINLSGVAERSQDVPAWVNRFKQTPSLAGKQFGELTLSRDKAGQLAFQLSGIARETP
>NZ_CP006579.1|WP_025325434.1|317072_317720_+|MSHA-biogenesis-protein-MshJ
MEMTAQWRAWAQSVAALSLRERVLILLTGTILLGAAGIYGWLDAADTRLSQERQALTAAQRDLEILTLENQGKQARLGRDPNAQVRQQLAGVEASLGRLDAELKAQTVDLIPAHEMPAVLEALLSRSANLHMLALTSLKPEPLMAGEQKANLFKHGIRLQLEGGYFDVYQYLKALEALPRHFYWKGFDYRVVEYPKAAVEMEIYTLSTSKEFIRG
>NZ_CP006579.1|WP_025325435.1|317712_318027_+|MSHA-biogenesis-protein-MshK
MAKWLTLLCCLLGPLAQAEVLQDPTAPLAGSGAAASPSKGDGLPRLQSVILGNGPALAVLNGQSYRVGQRIDGFLLVGISADAVVLEKAGKRQTLTLFGSKIRM
>NZ_CP006579.1|WP_025325436.1|318097_319777_+|pilus-(MSHA-type)-biogenesis-protein-MshL
MKKHHFCLLPLALAVAACTSYQHPEPVQAKDALKQAMKEQTPTAPLTTLPPSVQSELLQLNRPQQPLAVPEKRLRIAAHDVDAVEFFGSLFKGSRYSVAVHPGVAGAISVELKDVTLQEALATVGDMYGFDVQRKGNVFHVYPAGLRTETIPVNYLMMARRGLSRTSVSTGGVTANDNNNNGNNNFDSSGNNNNGNNSLGSSNGDNGNSNNSNGTRIETDSNNDYWSDLRDALQTLIGTGEGRAVITSPQAGLITVRAYPKELKAVREFLDQSGEHLKRQVVLEARILEVALNEGYEQGVDWSGLSASWDGNKGITGGGSLLDSPIASTPNQIFRALGGGAGFTISDGNFNVAVSLLKTQGDVNTLSSPRVTATNNQKAVIKVGTDEYFVTNASTTTTTSGNSAPIVTPNVELTPFFSGIALDVTPQIDEAGRVLLHIHPSVIDTEEQSKTINVGTADPLVLPLAKSSIRESDTVVQANNGDIIVIGGLMKTDKQEIVSKVPLLGDIPWVGEAFTNRRESTKKVELVILLKPTVVEKDTWQKELQRSSELLDKWYPPKG
>NZ_CP006579.1|WP_025325437.1|319940_320831_+|AAA-family-ATPase
MYLNHFGLQEAPFGLTPNTGFYYGLPPHEEAMQVLNWALAQGEGFIKVTGEVGTGKTLLCRKLLSELGSEACPVRLAWLPNPHLTPGELRTALALELGLAVQGESELDLTDRIHRHLIALHQQGSRVVVLIDEAQALPDETLEAIRLFGNLETESSKLLQIVLFGQPELDVRLARPHLRQLRQRIGFSYCLRPLRCDETRAYLEHRLHVSGYRGATLFGGLALRLLWRASRGIPRLINVLAQKCLMLAYGRGTRRIDSALVRLAIRDTDDARGGSFVRWWPLLLLLGTALAYGVWS

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Crispr_ID: NZ_CP006579_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006579_3

398287-398411

Orphan

Consensus_repeat	Method
AGGGCCAAACGGGATCCCTCTACCCCGGAAGATGAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006579_3

>merge|NZ_CP006579|3|398287-398411|CRISPRCasFinder
AGGGCCAAACGGGATCCCTCTACCCCGGAAGATGAGTGAGCTTTGCCAGTTATCAAGGGGCCAAGGGAATGACAGCGCACTATTCACGAGGGCCAAACGGGATCCCGCTACCCCGGAAGATGAGT

>NZ_CP006579|3|3|398287-398411|CRISPRCasFinder
AGGGCCAAACGGGATCCCTCTACCCCGGAAGATGAGT	GAGCTTTGCCAGTTATCAAGGGGCCAAGGGAATGACAGCGCACTATTCACG
AGGGCCAAACGGGATCCCGCTACCCCGGAAGATGAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006579.1\|WP_025325499.1\|393624_393939_-\|iron-donor-protein-CyaY	unknown	unknown	gnl\|CDD\|274572
NZ_CP006579.1\|WP_025325498.1\|392956_393610_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|334855
NZ_CP006579.1\|WP_025325501.1\|394239_395490_+\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|273415
NZ_CP006579.1\|WP_025325502.1\|395651_396482_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP006579.1\|WP_025325508.1\|400870_401680_-\|sugar-phosphatase	unknown	unknown	gnl\|CDD\|182509
NZ_CP006579.1\|WP_025325507.1\|399733_400504_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781
NZ_CP006579.1\|WP_041204135.1\|389105_390035_-\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NZ_CP006579.1\|WP_025325500.1\|394012_394219_+\|lipoprotein	unknown	unknown	gnl\|CDD\|338858
NZ_CP006579.1\|WP_025325505.1\|398529_399240_+\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|182696
NZ_CP006579.1\|WP_025325512.1\|405755_406994_-\|DUF3391-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NZ_CP006579.1\|WP_025325494.1\|387251_388328_-\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|377333
NZ_CP006579.1\|WP_025325510.1\|404041_404557_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|183256
NZ_CP006579.1\|WP_025325497.1\|390357_392877_+\|class-I-adenylate-cyclase	unknown	unknown	gnl\|CDD\|236522
NZ_CP006579.1\|WP_025325503.1\|396698_397379_+\|DUF484-family-protein	unknown	unknown	gnl\|CDD\|282228
NZ_CP006579.1\|WP_025325514.1\|408261_408780_-\|tyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|350355
NZ_CP006579.1\|WP_025325511.1\|404564_405728_-\|damage-inducible-protein-CinA	unknown	unknown	gnl\|CDD\|179629
NZ_CP006579.1\|WP_025325513.1\|407138_408086_+\|homoserine-O-succinyltransferase	unknown	unknown	gnl\|CDD\|235433
NZ_CP006579.1\|WP_080675049.1\|401960_403592_-\|DUF342-domain-containing-protein	unknown	unknown	gnl\|CDD\|377177
NZ_CP006579.1\|WP_025325495.1\|388324_389059_-\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|235647
NZ_CP006579.1\|WP_025325506.1\|399332_399737_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP006579.1\|WP_025325499.1\|393624_393939_-\|iron-donor-protein-CyaY	gnl\|CDD\|274572	TIGR03421, FeS_CyaY, iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	2.93287e-54
NZ_CP006579.1\|WP_025325498.1\|392956_393610_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|334855	pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase. This family consists of both phospholipases and carboxylesterases with broad substrate specificity, and is structurally related to alpha/beta hydrolases pfam00561.	7.14913e-39
NZ_CP006579.1\|WP_025325501.1\|394239_395490_+\|diaminopimelate-decarboxylase	gnl\|CDD\|273415	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis. [Amino acid biosynthesis, Aspartate family].	0
NZ_CP006579.1\|WP_025325502.1\|395651_396482_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	6.86953e-155
NZ_CP006579.1\|WP_025325508.1\|400870_401680_-\|sugar-phosphatase	gnl\|CDD\|182509	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional.	4.10843e-106
NZ_CP006579.1\|WP_025325507.1\|399733_400504_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	1.68591e-87
NZ_CP006579.1\|WP_041204135.1\|389105_390035_-\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	0
NZ_CP006579.1\|WP_025325500.1\|394012_394219_+\|lipoprotein	gnl\|CDD\|338858	pfam13627, LPAM_2, Prokaryotic lipoprotein-attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.	0.000122754
NZ_CP006579.1\|WP_025325505.1\|398529_399240_+\|HAD-IA-family-hydrolase	gnl\|CDD\|182696	PRK10748, PRK10748, 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB.	4.33907e-59
NZ_CP006579.1\|WP_025325512.1\|405755_406994_-\|DUF3391-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	3.66672e-51
NZ_CP006579.1\|WP_025325494.1\|387251_388328_-\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|377333	pfam04375, HemX, HemX, putative uroporphyrinogen-III C-methyltransferase. This is a family of bacterial putative uroporphyrinogen-III C-methyltransferase proteins. It forms one of the members of a complex of proteins involved in the biogenesis of the inner membrane in E.coli. Uroporphorphyrin-III C-methyltransferase (HemX) is a single spanning inner membrane protein that regulates the activity of NAD(P)H:glutamyl-tRNA reductase (HemA) in the tetrapyrrole biosynthesis pathway.	2.88922e-96
NZ_CP006579.1\|WP_025325510.1\|404041_404557_+\|metal-dependent-hydrolase	gnl\|CDD\|183256	PRK11648, PRK11648, metal-dependent hydrolase.	7.24407e-68
NZ_CP006579.1\|WP_025325497.1\|390357_392877_+\|class-I-adenylate-cyclase	gnl\|CDD\|236522	PRK09450, cyaA, class I adenylate cyclase.	0
NZ_CP006579.1\|WP_025325503.1\|396698_397379_+\|DUF484-family-protein	gnl\|CDD\|282228	pfam04340, DUF484, Protein of unknown function, DUF484. This family consists of several proteins of uncharacterized function.	3.47757e-37
NZ_CP006579.1\|WP_025325514.1\|408261_408780_-\|tyrosine-protein-phosphatase	gnl\|CDD\|350355	cd14505, CDKN3-like, cyclin-dependent kinase inhibitor 3 and similar proteins. This family is composed of eukaryotic cyclin-dependent kinase inhibitor 3 (CDKN3) and related archaeal and bacterial proteins. CDKN3 is also known as kinase-associated phosphatase (KAP), CDK2-associated dual-specificity phosphatase, cyclin-dependent kinase interactor 1 (CDI1), or cyclin-dependent kinase-interacting protein 2 (CIP2). It has been characterized as dual-specificity phosphatase, which function as a protein-serine/threonine phosphatase (EC 3.1.3.16) and protein-tyrosine-phosphatase (EC 3.1.3.48). It dephosphorylates CDK2 at a threonine residue in a cyclin-dependent manner, resulting in the inhibition of G1/S cell cycle progression. It also interacts with CDK1 and controls progression through mitosis by dephosphorylating CDC2. CDKN3 may also function as a tumor suppressor; its loss of function was found in a variety of cancers including glioblastoma and hepatocellular carcinoma. However, it has also been found over-expressed in many cancers such as breast, cervical, lung and prostate cancers, and may also have an oncogenic function.	4.9645e-42
NZ_CP006579.1\|WP_025325511.1\|404564_405728_-\|damage-inducible-protein-CinA	gnl\|CDD\|179629	PRK03673, PRK03673, nicotinamide mononucleotide deamidase-related protein YfaY.	2.50269e-87
NZ_CP006579.1\|WP_025325513.1\|407138_408086_+\|homoserine-O-succinyltransferase	gnl\|CDD\|235433	PRK05368, PRK05368, homoserine O-succinyltransferase; Provisional.	0
NZ_CP006579.1\|WP_080675049.1\|401960_403592_-\|DUF342-domain-containing-protein	gnl\|CDD\|377177	pfam03961, FapA, Flagellar Assembly Protein A. Members of this family include FapA (flagellar assembly protein A), found in Vibrio vulnificus. The synthesis of flagella allows bacteria to respond to chemotaxis by facilitating motility. Studies examining the role of FapA show that the loss or delocalization of FapA results in a complete failure of the flagellar biosynthesis and motility in response to glucose mediated chemotaxis. The polar localization of FapA is required for flagellar synthesis, and dephosphorylated EIIAGlc (Glucose-permease IIA component) inhibited the polar localization of FapA through direct interaction.	7.50069e-146
NZ_CP006579.1\|WP_025325495.1\|388324_389059_-\|uroporphyrinogen-III-synthase	gnl\|CDD\|235647	PRK05928, hemD, uroporphyrinogen-III synthase; Reviewed.	1.78695e-61

>NZ_CP006579.1|WP_025325503.1|396698_397379_+|DUF484-family-protein
MSELKRQESLMDEATVLEYLARYPEFFQRHGAMLDRIRIPHEHKGTISLVERQLDRQRERIEQLEQEITELMGIASENERIFRVYADLYGELYGCETLFELSAVMGKAFVQRLRLTGLRLWLSPKKFPLSGPEQRFLADGKQLDQLLGQRLPGTDYYFGRLNQSEKQALFGNDVLVNSVALMRLGDLGVLAFASSDPSHFSPHNDTLLLGQLGRLLQLRLPELVRG
>NZ_CP006579.1|WP_025325502.1|395651_396482_+|diaminopimelate-epimerase
MLIEFSKMHGLGNDFMVVDGVTQKVFFSNDVIKKLADRHFGIGFDQLLLVEPPYDPELDFHYRIFNADGSEVEQCGNGARCFARFVRLKGLVNRDRIAVSTARGRITLQLEGENQVTVNMGVPQFEPGKIPFRAQKAEKTYLLRAQDHTVMCGAVSMGNPHCVIEVPSVADAPVETLGPIMERHERFPERVNVGFMEMVSASEIKLRVFERGVGETLACGTGACAAVVIGISQGKLRERVTVTLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEL
>NZ_CP006579.1|WP_025325501.1|394239_395490_+|diaminopimelate-decarboxylase
MDHFNYDADGQLQAEQLPLQQLAEQYGTPLYVYSRATLERHWHAFDQAAGDIPHLICYAVKANSNLALLNLLARLGSGFDIVSGGELSRVLAAGGDPAKVVFSGVAKSEAEMRLALEKEILCFNLESEAELERLNRVAGSMGKKARVSVRVNPDIDAGTHPYISTGLKQNKFGIPIEQAPAIYRKAAAMAHIEIKGVDCHIGSQLTELNPFMEAADKLLRLIDELAAEGIHIHHLDVGGGLGVNYGAEQPPHPTEYAEALKQKLAGRDLTLLFEPGRAIVANAGVLLTRVEFLKPGETRNFALIDAGMNDLLRPSLYGAWMNIIEVDSRTTHEKALYDVVGPVCETGDFLGKERTLAIAEGSLLAVRSAGAYGFTMSSNYNTRPRAAEVLVDGDQAHLIREREQLADLWRGEHLLP
>NZ_CP006579.1|WP_025325500.1|394012_394219_+|lipoprotein
MITQFTKCLFAASLSFGLAACGLTGPLYMPPAEQPVSTEQTPAQPKTESTPQAASPATAKPASEAAPQ
>NZ_CP006579.1|WP_025325499.1|393624_393939_-|iron-donor-protein-CyaY
MKDHEYHALTDAFFQYVEDVIDEGYPDIDCERAGGVLTLSFENKTKVIINKQEPLHQIWVATRENGFHFELRGDSWIDNRFGDELKTLLTRACTTQAGEPVQFP
>NZ_CP006579.1|WP_025325498.1|392956_393610_-|alpha/beta-fold-hydrolase
MMDLHPQGARHAVIWLHGLGDSGAGLAPLVDALALPATLPVRHLLPDAPERPITINMGYKMRGWYDIKSFDDPADRAVESHVRESADRIAALLDQLVAEGFAPERIVLAGFSQGGVIASFTALRYQAKLAGLLCMSTYLAAPERLIEEMSEAARALPICYMHGIYDDVVSLSMGWDAKNRLETAGLSLEWHEYPMRHEICRPQLADIRHWLLARLGA
>NZ_CP006579.1|WP_025325497.1|390357_392877_+|class-I-adenylate-cyclase
MLVKLDTLVARYDELNRLKTQRALDLMSRYGQQVFQLLPVMLHFNHPLLPGYVAGDVPHGIWSFVANEAQQAFIQDLCQNANCQGGLSTHDKSIQGLYSMGSTSSIGQCCHSDLDIWVCHVAGLSSERLALLEQKCQHLSLWAEQRGVDLNFFLIPEDKFRQRNDAQMQGESCGSAQHLLLLDEFYRSAMHIAGKRLLWYLVPAEYDDHYDDYVNGLFAHGKLSQDDWLDLGGFDRIPAEEYFGSALWQLYKGIDSPYKAVLKSVLMEAYSHEYPNTRLLSVTSRDWFQHNEGMHYRLDNYCLMLDKVTNYLKSIGDMQRLDLVRRCFYLKVCDGLSHPKEEHSPDWRREQMAQLVAYWGWSPERLHHLDHRQEWKVEDVKVAYAELLEALMQSYRNLIQFARRNNISESINPEDIGILSRKLYAAFESLPGKVQRINLKIAPDLGEPDLSLVQVPHGRLNRAGWYLYKHSLEPADIIGRAPLEYNGYISKLVAWAYFNGLLTPQSRVHLFNQGSDLHIDNLHQFCRDLSGTFPVKYPRATNLALSRPCEIHQLSIFLNLETDPSSHWVGQVIEFDANAADVFSFGRNQECLVGSVDLVYRNSWSEIRTLHFQGEEAVVDALTTILGKMHQDAAAPEMIEVFCYSQHFRSLVRTRFQQLVAECIELRLARDKQQLVKTLALGREKYGIFFERRGVSVKKLENAIDFYRHISHNKLDHLPLRLDKTHSQHLPGIVDAYASEGLVQFFFDTRDAGTNIYILDEANRVEIYQHFAGNKDELVQGVNRFYTSGHERFSNAGQFSNFNLPQYYEIVQMGDKLEVIPYRSQSPQRDNPGAAREVG
>NZ_CP006579.1|WP_041204135.1|389105_390035_-|hydroxymethylbilane-synthase
MAARTLRIATRKSPLALWQANFVKDRLEALYPDLRVELVPMSTQGDKILDTPLAKVGGKGLFVKELETAMLEGRADIAVHSMKDVPVEFPEGLGLHTICEREDPRDAFVSNRFQQIDELPQGAVVGTSSLRRQCQLRAARPDLVIRDLRGNVNTRLAKLDAGEYDAIILAAAGLKRLEMAHRITAFIEPEQSLPANGQGAVGIECRQDDHELHALLAPLEHAETRIRVLTERAMNRALQGGCQVPIGAYALVQGNEVWLRGLVGSPDGTQVIRDEIRGPLADGEALGHALAQRLLAAGADAILAEVYRP
>NZ_CP006579.1|WP_025325495.1|388324_389059_-|uroporphyrinogen-III-synthase
MVPLVVRPAAQATLLVQLLRQQGHAPLCCPLLETVAGSELPRLPELLPQADIIIAVSVHAVKFAHHFLLQTGLTWPHIDYFAVGQASADAFSEVGVQALCPADPRSEGLLALPPLQGVSGKRVLILRGNDGRDLIARTLASRGALVHYCATYERHYPELDGDALTRHWQAAGLDSLLVTSGELLQRLLALVPGPQRPWLYDRLLVVPSPRVAEMAEGAGFTRIVIAQGASNQALVAALELRKME
>NZ_CP006579.1|WP_025325494.1|387251_388328_-|uroporphyrinogen-III-C-methyltransferase
MTEQQEVQPSAAAPAADNNKPEHKAAGNKKGGAGVVLGGVAILLALGLTGGLYLHGHQNAVAQQAELGALKLQLAEAMGKLDQNNSKDAEQFSALGKSQQQQQEALDALQHKVLDLDDKRPNDWMLAESEYLVRMAGRKLWLEHDIVSAITLLGNADERIKALNDPSLMHIRKALAEDIAKLKGMPRVDREGLTLKLAALSDQIELLPLSTVSMPEAKAEPDQAVSANPDEWESNLKKNWVKFTENFITIRRRDGAVEALLSPQQEIFLRENLKTKLLQAQLAVYREQQALYTDSLEKAQRWLTQYFDTDNSATQYMQSELDKLKGEQIQFDYPDQFKTQAMLEQVLTERLQRILAGN
>NZ_CP006579.1|WP_025325505.1|398529_399240_+|HAD-IA-family-hydrolase
MQFYRRWQPVAAISFDLDDTLYDNGPAIARAEQWMLSHLRSEYLATAMLDKPRWLELKRNLLLARPELGQDVSLARQHGIREAMVQGGMAASRAELEAERVFAAFLAERSKIEVSEGTHQLLARLAERYPLAVITNGNLDLVQAGLADYFTLVCKAGVGARMKPAPDMFVQVQQALGLAPGQILHVGDHPETDVLGARLHGFKAAWLNERRLPWQSLQLLPDVELATLDELAGLLL
>NZ_CP006579.1|WP_025325506.1|399332_399737_+|hypothetical-protein
MKSVIWLAIPMVLAGCDLFRDHYRMEFRDGSWRDIAISPFSDQARWREGCATGEILVDMTLPLKRGKVVDGREQLLIGGELFELEEARLYRGNGMVLGQAPDHVQRGLKGLDVCRTLRPDRGALPKLKGKGFGD
>NZ_CP006579.1|WP_025325507.1|399733_400504_-|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MPNPSSHSKPVVLMTMGAQARSGHAYQVMTHKYITPLVEISGCVPLLVPTCCGTADLEQYLDLADGVYLSGAGSNIDPALYGQENLTPEKAQDRDRDLFDIALVRAALDRGLPLLGICRGMQEINVALGGDIHQKVYCEPGYADHREDADDPVEEQYGHSHQVSLVPGSWFADLMGEAQIPVNSLHGQGIRRLGEGLAPLAHAEDGLIEAIHAPALSPFLLAVQWHPEWKAKENPHSIKLFSAFGDACRQYRQRAG
>NZ_CP006579.1|WP_025325508.1|400870_401680_-|sugar-phosphatase
MYKLIALDMDGTLLNPHGQITPRTHAAIAAARTQGVTVVLTSGRPLEGMTPYLAELGLTGQDDYVICYNGALVQQVADQHILRSQLLTGSDASAIAHLASELGVNVHGFSVRQGLISPRVSTYTEHESRLIKMPIKLVDFATLPADEQIMKVMMIDPEPQLSRAIAQLPAELYERYTVVRSSPYFLEFMNKRSNKGTGVAALAEHLGLTAHQVIAVGDAGNDRHMIEYAGLGVAMGNATDEIKALAQHTTARNDEDGVARVIEQFILNA
>NZ_CP006579.1|WP_080675049.1|401960_403592_-|DUF342-domain-containing-protein
MTYVCLRITPGLTEPVQEQHVLALLRLSNCRRYQPLDEGIRQAVALLNTLLTQPDAPSHPPVPIAQRQDARLLVLVDKEQMSASAQITADWGGSPLTLAQLQEAVAASPIKQGVSERLLAAAIKAASEAAPGARLNPVIALGKAARHGLDTRLERLVETAAERILKPQEVDHGKVDMRDLGTLLTVKEGAPLMRRHPATQGIDGFTVTGQVLPARSGKESAMTAGEGTCFSPEDPDLLLATRAGLPCQERAGMRVDEVLSVKQVDIRHGHVMFEGSLLVTGDVMPGMRIKTSGDVVIGGFVEGGYIESGGTITVRNGIIGRKLEGDQYLCHLNAGGEIHASYAQYARLEADGDIHIQSQLSHSYCRSGQDIRVGDSTMRKGHLIGGINIANRLIIAPVLGASAANRTRLQILGGYFSHKEQEQALRQRKQVCREQLDKLQDLILRLLQQPSDKRNPETLKKIKALRTHQLDESQSLDEQLAEVQLELQTLMANMDIIATQRLFPGVEVEMAHHHNRVDIEHGPIHFAIREDQLQLTPYEGQRL
>NZ_CP006579.1|WP_025325510.1|404041_404557_+|metal-dependent-hydrolase
MTAQGHLLFSVTCALLAHKVELTPALAEGSLWHIVPMALASALLPDLDHPQSLLGRQLPWISGPLSRLFGHRGFTHSLLAVGLGIWGLAQFQAPGPLSGVMKDALIVGYLSHLLGDWLTPAGIPLLWPWRRRFRLPGLPLKSGGGYEKAFCLLTLALAGYWVHGNAGFGAF
>NZ_CP006579.1|WP_025325511.1|404564_405728_-|damage-inducible-protein-CinA
MRIEIISTGDEIVTGLVVDTNAAWLSALLLEQGWQVRRRLTVGDNLADLKAALQESASRAEVVLVCGGLGPTADDLTAQAAAEAFDQPLTLFPDWLATMAERYASRGRTMAQSNSKQAWLPRGCEILDNPVGTACGFVVSHPASHGQSRLFFTPGVPFEFKQMVREQILPRLKALAGEETDTELRRFYTFGISESALSDKLDAAPWPAGIELGYRSSMPLIELKLIGHGASAADMEAAEARLLGEISPWLVGRGNEEPAQQILALLGGRPLWLQEGESRGILLAMCHPHPGLEASFSHSLPSELDQLTGGGREPSLTIGSAGPDGVPLLLCADGRRIGQRVKLSHPDPESGRRILAFAALDMLRRHLLGLPVLADYLTLTRTASRID
>NZ_CP006579.1|WP_025325512.1|405755_406994_-|DUF3391-domain-containing-protein
MTGIKISVDRLQVGNYVSLPLGWREHPFLFSSFKLKSEEEIELIRRLGLKLVTIIPDKSDAPPKPLDQVQPAPDGTDDLVGRQQEMQQEKTRRIEQLQRYRRDLQQCEKHFQQSLAQVRNLMGKIQSRPLNAINEAQELINAMTEQLLSVDEMVLHLVSDSADGNSLQFHSLNVSVLSMLLARECKLPAEAIRQVGMGALFHDIGKLKIPSQILRKASPLTKPEQNLMAQHPRYGLELLSLASDFPEPAKRIVQYHHEYLDGSGPQGLRGDQLDPLTQIVSLINEYDNLCHLQAKVPYSALGNLYKQRKAQFNTDHLGMLIRLMGIYPPGSVVQLSNGQVGLVMSVNASRLLYPAVLVYDPRIPRQEAAIIDLEQAELTIAKVIHPKRLPPAVFEYLNPRTRISYYFEHNKP
>NZ_CP006579.1|WP_025325513.1|407138_408086_+|homoserine-O-succinyltransferase
MPIKIPDQLPAAEVLGQENIFVMTESRAVTQNIRPLRVLILNLMPKKIETEIQLMRMLSNSPLQVDVDLLRIDDRESKNTPQAHLENFYHDFEQVRGNNYDGMIITGAPLGLVEFEEVVYWPRIVEIIEWSHQHVTSTLFLCWAVQAALKALYGMEKQTHGEKLSGVYRHHRLDEHEPLLRGFDDEFVAPHSRYAAFDGDLIRAHTDLQIFAESEEAGVYLAATKDCRQVFVTGHPEYDALTLDGEYRRDLAAGLTPVIPVNYYPDNDPGQTPRATWRSHGHLLFSNWLNYYVYQLTSYRLEDIGKVFTYEQPKG
>NZ_CP006579.1|WP_025325514.1|408261_408780_-|tyrosine-protein-phosphatase
MLSAHPFWSLEVPRLDGQLLLTPCPGNQQVAMPLALAQLQLAGAGGVLTLMTEDELAARGAGSLGSLVRARSMAWFHLPIADDEAPDEAFEQAWPPVLPQLLSLLREGRHLAIHCHGGSGRTGLVAALLLLTLGQPQPEAMAAIRARRPGAFTLACHRHWLDTRGRRLAGAD

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Crispr_ID: NZ_CP006579_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006579_4

408074-408197

Orphan

Consensus_repeat	Method
GCCCAAGGGCTAGGTGTCATCGGGCCGGCTCACCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006579_4

>merge|NZ_CP006579|4|408074-408197|CRISPRCasFinder
GCCCAAGGGCTAGGTGTCATCGGGCCGGCTCACCCGATATGGTCCGCTATCGGCTGGAGGACATCGGCAAGGTGTTCAGCTATGAGCCGCCCAAAGGCTAGGTGTCATCGGGCCGGCTCACCCG

>NZ_CP006579|4|4|408074-408197|CRISPRCasFinder
GCCCAAGGGCTAGGTGTCATCGGGCCGGCTCACCCG	ATATGGTCCGCTATCGGCTGGAGGACATCGGCAAGGTGTTCAGCTATGAGCC
GCCCAAAGGCTAGGTGTCATCGGGCCGGCTCACCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006579.1\|WP_080675049.1\|401960_403592_-\|DUF342-domain-containing-protein	unknown	unknown	gnl\|CDD\|377177
NZ_CP006579.1\|WP_025325508.1\|400870_401680_-\|sugar-phosphatase	unknown	unknown	gnl\|CDD\|182509
NZ_CP006579.1\|WP_025325507.1\|399733_400504_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781
NZ_CP006579.1\|WP_025325505.1\|398529_399240_+\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|182696
NZ_CP006579.1\|WP_193353990.1\|397401_398325_+\|tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|234698
NZ_CP006579.1\|WP_162472073.1\|411363_411606_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025325514.1\|408261_408780_-\|tyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|350355
NZ_CP006579.1\|WP_025325510.1\|404041_404557_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|183256
NZ_CP006579.1\|WP_025325516.1\|409466_411431_-\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|224287
NZ_CP006579.1\|WP_025325503.1\|396698_397379_+\|DUF484-family-protein	unknown	unknown	gnl\|CDD\|282228
NZ_CP006579.1\|WP_025325519.1\|413765_414302_-\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|376760
NZ_CP006579.1\|WP_025325512.1\|405755_406994_-\|DUF3391-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NZ_CP006579.1\|WP_025325521.1\|415955_416429_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|223532
NZ_CP006579.1\|WP_025325511.1\|404564_405728_-\|damage-inducible-protein-CinA	unknown	unknown	gnl\|CDD\|179629
NZ_CP006579.1\|WP_025325515.1\|408940_409411_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP006579.1\|WP_025325522.1\|416459_416705_+\|DUF3624-family-protein	unknown	unknown	gnl\|CDD\|372017
NZ_CP006579.1\|WP_041204136.1\|412088_413705_+\|glycosidase	unknown	unknown	gnl\|CDD\|200451
NZ_CP006579.1\|WP_025325517.1\|411691_411964_+\|DUF2442-domain-containing-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025325506.1\|399332_399737_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025325520.1\|414326_415769_-\|RimK-like-ATPgrasp-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|379599

Protein	Function_ID	Function_description	E-value
NZ_CP006579.1\|WP_080675049.1\|401960_403592_-\|DUF342-domain-containing-protein	gnl\|CDD\|377177	pfam03961, FapA, Flagellar Assembly Protein A. Members of this family include FapA (flagellar assembly protein A), found in Vibrio vulnificus. The synthesis of flagella allows bacteria to respond to chemotaxis by facilitating motility. Studies examining the role of FapA show that the loss or delocalization of FapA results in a complete failure of the flagellar biosynthesis and motility in response to glucose mediated chemotaxis. The polar localization of FapA is required for flagellar synthesis, and dephosphorylated EIIAGlc (Glucose-permease IIA component) inhibited the polar localization of FapA through direct interaction.	7.50069e-146
NZ_CP006579.1\|WP_025325508.1\|400870_401680_-\|sugar-phosphatase	gnl\|CDD\|182509	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional.	4.10843e-106
NZ_CP006579.1\|WP_025325507.1\|399733_400504_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	1.68591e-87
NZ_CP006579.1\|WP_025325505.1\|398529_399240_+\|HAD-IA-family-hydrolase	gnl\|CDD\|182696	PRK10748, PRK10748, 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB.	4.33907e-59
NZ_CP006579.1\|WP_193353990.1\|397401_398325_+\|tyrosine-recombinase-XerC	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	7.67518e-158
NZ_CP006579.1\|WP_041204136.1\|412088_413705_+\|glycosidase	gnl\|CDD\|200451	cd00551, AmyAc_family, Alpha amylase catalytic domain family. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; and C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost this catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	7.63343e-56
NZ_CP006579.1\|WP_025325514.1\|408261_408780_-\|tyrosine-protein-phosphatase	gnl\|CDD\|350355	cd14505, CDKN3-like, cyclin-dependent kinase inhibitor 3 and similar proteins. This family is composed of eukaryotic cyclin-dependent kinase inhibitor 3 (CDKN3) and related archaeal and bacterial proteins. CDKN3 is also known as kinase-associated phosphatase (KAP), CDK2-associated dual-specificity phosphatase, cyclin-dependent kinase interactor 1 (CDI1), or cyclin-dependent kinase-interacting protein 2 (CIP2). It has been characterized as dual-specificity phosphatase, which function as a protein-serine/threonine phosphatase (EC 3.1.3.16) and protein-tyrosine-phosphatase (EC 3.1.3.48). It dephosphorylates CDK2 at a threonine residue in a cyclin-dependent manner, resulting in the inhibition of G1/S cell cycle progression. It also interacts with CDK1 and controls progression through mitosis by dephosphorylating CDC2. CDKN3 may also function as a tumor suppressor; its loss of function was found in a variety of cancers including glioblastoma and hepatocellular carcinoma. However, it has also been found over-expressed in many cancers such as breast, cervical, lung and prostate cancers, and may also have an oncogenic function.	4.9645e-42
NZ_CP006579.1\|WP_025325510.1\|404041_404557_+\|metal-dependent-hydrolase	gnl\|CDD\|183256	PRK11648, PRK11648, metal-dependent hydrolase.	7.24407e-68
NZ_CP006579.1\|WP_025325516.1\|409466_411431_-\|LTA-synthase-family-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	6.54043e-96
NZ_CP006579.1\|WP_025325503.1\|396698_397379_+\|DUF484-family-protein	gnl\|CDD\|282228	pfam04340, DUF484, Protein of unknown function, DUF484. This family consists of several proteins of uncharacterized function.	3.47757e-37
NZ_CP006579.1\|WP_025325519.1\|413765_414302_-\|MgtC/SapB-family-protein	gnl\|CDD\|376760	pfam02308, MgtC, MgtC family. The MgtC protein is found in an operon with the Mg2+ transporter protein MgtB. The function of MgtC and its homologs is not known.	3.42971e-32
NZ_CP006579.1\|WP_025325512.1\|405755_406994_-\|DUF3391-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	3.66672e-51
NZ_CP006579.1\|WP_025325521.1\|415955_416429_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|223532	COG0456, RimI, Acetyltransferases [General function prediction only].	1.85412e-14
NZ_CP006579.1\|WP_025325511.1\|404564_405728_-\|damage-inducible-protein-CinA	gnl\|CDD\|179629	PRK03673, PRK03673, nicotinamide mononucleotide deamidase-related protein YfaY.	2.50269e-87
NZ_CP006579.1\|WP_025325515.1\|408940_409411_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	4.77279e-36
NZ_CP006579.1\|WP_025325522.1\|416459_416705_+\|DUF3624-family-protein	gnl\|CDD\|372017	pfam12292, DUF3624, Protein of unknown function (DUF3624). This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There is a conserved GRC sequence motif.	3.66392e-24
NZ_CP006579.1\|WP_025325520.1\|414326_415769_-\|RimK-like-ATPgrasp-N-terminal-domain-containing-protein	gnl\|CDD\|379599	pfam14401, RLAN, RimK-like ATPgrasp N-terminal domain. An uncharacterized alpha+beta fold domain that is mostly fused to a RimK-like ATP-grasp and is found in bacteria and euryarchaea. Members of this family are almost always associated in gene neighborhoods with a GNAT-like acetyltransferase fused to a papain-like petidase. Additionally M20-like peptidases, GCS2, 4Fe-4S Ferredoxins, a distinct metal-sulfur cluster protein and ribosomal proteins are found in the gene neighborhoods. Contextual analysis suggests a role for these in peptide biosynthesis.	5.81918e-44

>NZ_CP006579.1|WP_025325512.1|405755_406994_-|DUF3391-domain-containing-protein
MTGIKISVDRLQVGNYVSLPLGWREHPFLFSSFKLKSEEEIELIRRLGLKLVTIIPDKSDAPPKPLDQVQPAPDGTDDLVGRQQEMQQEKTRRIEQLQRYRRDLQQCEKHFQQSLAQVRNLMGKIQSRPLNAINEAQELINAMTEQLLSVDEMVLHLVSDSADGNSLQFHSLNVSVLSMLLARECKLPAEAIRQVGMGALFHDIGKLKIPSQILRKASPLTKPEQNLMAQHPRYGLELLSLASDFPEPAKRIVQYHHEYLDGSGPQGLRGDQLDPLTQIVSLINEYDNLCHLQAKVPYSALGNLYKQRKAQFNTDHLGMLIRLMGIYPPGSVVQLSNGQVGLVMSVNASRLLYPAVLVYDPRIPRQEAAIIDLEQAELTIAKVIHPKRLPPAVFEYLNPRTRISYYFEHNKP
>NZ_CP006579.1|WP_025325511.1|404564_405728_-|damage-inducible-protein-CinA
MRIEIISTGDEIVTGLVVDTNAAWLSALLLEQGWQVRRRLTVGDNLADLKAALQESASRAEVVLVCGGLGPTADDLTAQAAAEAFDQPLTLFPDWLATMAERYASRGRTMAQSNSKQAWLPRGCEILDNPVGTACGFVVSHPASHGQSRLFFTPGVPFEFKQMVREQILPRLKALAGEETDTELRRFYTFGISESALSDKLDAAPWPAGIELGYRSSMPLIELKLIGHGASAADMEAAEARLLGEISPWLVGRGNEEPAQQILALLGGRPLWLQEGESRGILLAMCHPHPGLEASFSHSLPSELDQLTGGGREPSLTIGSAGPDGVPLLLCADGRRIGQRVKLSHPDPESGRRILAFAALDMLRRHLLGLPVLADYLTLTRTASRID
>NZ_CP006579.1|WP_025325510.1|404041_404557_+|metal-dependent-hydrolase
MTAQGHLLFSVTCALLAHKVELTPALAEGSLWHIVPMALASALLPDLDHPQSLLGRQLPWISGPLSRLFGHRGFTHSLLAVGLGIWGLAQFQAPGPLSGVMKDALIVGYLSHLLGDWLTPAGIPLLWPWRRRFRLPGLPLKSGGGYEKAFCLLTLALAGYWVHGNAGFGAF
>NZ_CP006579.1|WP_080675049.1|401960_403592_-|DUF342-domain-containing-protein
MTYVCLRITPGLTEPVQEQHVLALLRLSNCRRYQPLDEGIRQAVALLNTLLTQPDAPSHPPVPIAQRQDARLLVLVDKEQMSASAQITADWGGSPLTLAQLQEAVAASPIKQGVSERLLAAAIKAASEAAPGARLNPVIALGKAARHGLDTRLERLVETAAERILKPQEVDHGKVDMRDLGTLLTVKEGAPLMRRHPATQGIDGFTVTGQVLPARSGKESAMTAGEGTCFSPEDPDLLLATRAGLPCQERAGMRVDEVLSVKQVDIRHGHVMFEGSLLVTGDVMPGMRIKTSGDVVIGGFVEGGYIESGGTITVRNGIIGRKLEGDQYLCHLNAGGEIHASYAQYARLEADGDIHIQSQLSHSYCRSGQDIRVGDSTMRKGHLIGGINIANRLIIAPVLGASAANRTRLQILGGYFSHKEQEQALRQRKQVCREQLDKLQDLILRLLQQPSDKRNPETLKKIKALRTHQLDESQSLDEQLAEVQLELQTLMANMDIIATQRLFPGVEVEMAHHHNRVDIEHGPIHFAIREDQLQLTPYEGQRL
>NZ_CP006579.1|WP_025325508.1|400870_401680_-|sugar-phosphatase
MYKLIALDMDGTLLNPHGQITPRTHAAIAAARTQGVTVVLTSGRPLEGMTPYLAELGLTGQDDYVICYNGALVQQVADQHILRSQLLTGSDASAIAHLASELGVNVHGFSVRQGLISPRVSTYTEHESRLIKMPIKLVDFATLPADEQIMKVMMIDPEPQLSRAIAQLPAELYERYTVVRSSPYFLEFMNKRSNKGTGVAALAEHLGLTAHQVIAVGDAGNDRHMIEYAGLGVAMGNATDEIKALAQHTTARNDEDGVARVIEQFILNA
>NZ_CP006579.1|WP_025325507.1|399733_400504_-|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MPNPSSHSKPVVLMTMGAQARSGHAYQVMTHKYITPLVEISGCVPLLVPTCCGTADLEQYLDLADGVYLSGAGSNIDPALYGQENLTPEKAQDRDRDLFDIALVRAALDRGLPLLGICRGMQEINVALGGDIHQKVYCEPGYADHREDADDPVEEQYGHSHQVSLVPGSWFADLMGEAQIPVNSLHGQGIRRLGEGLAPLAHAEDGLIEAIHAPALSPFLLAVQWHPEWKAKENPHSIKLFSAFGDACRQYRQRAG
>NZ_CP006579.1|WP_025325506.1|399332_399737_+|hypothetical-protein
MKSVIWLAIPMVLAGCDLFRDHYRMEFRDGSWRDIAISPFSDQARWREGCATGEILVDMTLPLKRGKVVDGREQLLIGGELFELEEARLYRGNGMVLGQAPDHVQRGLKGLDVCRTLRPDRGALPKLKGKGFGD
>NZ_CP006579.1|WP_025325505.1|398529_399240_+|HAD-IA-family-hydrolase
MQFYRRWQPVAAISFDLDDTLYDNGPAIARAEQWMLSHLRSEYLATAMLDKPRWLELKRNLLLARPELGQDVSLARQHGIREAMVQGGMAASRAELEAERVFAAFLAERSKIEVSEGTHQLLARLAERYPLAVITNGNLDLVQAGLADYFTLVCKAGVGARMKPAPDMFVQVQQALGLAPGQILHVGDHPETDVLGARLHGFKAAWLNERRLPWQSLQLLPDVELATLDELAGLLL
>NZ_CP006579.1|WP_193353990.1|397401_398325_+|tyrosine-recombinase-XerC
MPPALSGELTAFIEYLRVERQLSPHTRSNYQAHLEAMAAELVRLGVEDWARLEASQVRSLVTRMHKAGLAPRSLATKVSALRSFCDWQVRQGRLSANPARGIVTPKQGRPLPKNLDVDEMYQLLNITDEQDPLAVRDRAIMELMYSSGLRLAELVGLNLADVKLDERQLRVTGKGSRERVLPMGRMAVEWLQKWLKVRPLLAGDEGEALFVSKRRQRLSARSVQERLDGWGNKQALNAHVHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHLDFQHLAKVYDNAHPRAKRDPSTPEDE
>NZ_CP006579.1|WP_025325503.1|396698_397379_+|DUF484-family-protein
MSELKRQESLMDEATVLEYLARYPEFFQRHGAMLDRIRIPHEHKGTISLVERQLDRQRERIEQLEQEITELMGIASENERIFRVYADLYGELYGCETLFELSAVMGKAFVQRLRLTGLRLWLSPKKFPLSGPEQRFLADGKQLDQLLGQRLPGTDYYFGRLNQSEKQALFGNDVLVNSVALMRLGDLGVLAFASSDPSHFSPHNDTLLLGQLGRLLQLRLPELVRG
>NZ_CP006579.1|WP_025325514.1|408261_408780_-|tyrosine-protein-phosphatase
MLSAHPFWSLEVPRLDGQLLLTPCPGNQQVAMPLALAQLQLAGAGGVLTLMTEDELAARGAGSLGSLVRARSMAWFHLPIADDEAPDEAFEQAWPPVLPQLLSLLREGRHLAIHCHGGSGRTGLVAALLLLTLGQPQPEAMAAIRARRPGAFTLACHRHWLDTRGRRLAGAD
>NZ_CP006579.1|WP_025325515.1|408940_409411_+|Lrp/AsnC-family-transcriptional-regulator
MRNLDQLDLDILAHLFRDAGMTNKDLAALVGVAPSTCLERVRKLQQDGVLKGAHCEVDYQALGGHIQAMVSLQLARHSRQIIDAFRDAILALPEVISLFHMGGKDDFLVHLCVADTEHLRNFVFDHFTSREEVVHLETSLVFEHRFSRSLPCFTHP
>NZ_CP006579.1|WP_025325516.1|409466_411431_-|LTA-synthase-family-protein
MTKIRHWLGPFWPIAIFSVIALIALSASRAGLGLWQQERVDAVAGWSQLLLQGIRVDLATLCWLWGVPAVFTLLLAGPHAPGRAWLQLIRVWLTLGLWLMLFLEISTPAFVTEYGVRPNRLYIEYLIYPKEVLAMLWAGRKGELLLALVFSLLTLGGGWWLSGRLMRHLSFPRWYLRPAFALLILAIGFLGARSSLGHRALNPAMVAFASDPLVNALTVNSAYSLFFAIKQMSNEESAGEFYGELPRERILALVREESGRPGQDYSSETQPSQTFNEASHGGKPKNLVILLQESLGAQFVGSLGGLPLTPNIDALSREGWAFEQLYATGTRSVRGIEAVLTGFTPTPAQAVVKLGKSQTNFFTIADLLKQRGYDTSFIYGGESHFDNMRSFFLGNGFTTIVEQKDFKNPVFEGSWGASDEDLMAKANDTFEALHKQGKPFFSLVFSSSNHDPFEFPDDRITLYEQPRATRNNAAKYADYAVGEFFRKARASDYWKDTLFLVIADHDSRVGGASLVPIPRFHIPGVIVGEGIAPKQDRRIVSQIDMAPTLLSLMGISADYPMLGKDLTRMPADWPGRAIMQYDKNFALMRGKDVVILQPERAAEGFVYDDASETLTPAPQPDAMKDAALGLVLWGNLAYQQGLYQTAPDDRLALN
>NZ_CP006579.1|WP_162472073.1|411363_411606_+|hypothetical-protein
MSAITEKMAMGQNGPNQCLIFVIVFPDKACFLMPIRGQLFILQGYDNGGGERLRRREKLDAIDNIDFLMRAPGGDKRQHK
>NZ_CP006579.1|WP_025325517.1|411691_411964_+|DUF2442-domain-containing-protein
MPVFIDVEYVHGWCLFVVLSDGTTGVLDLTPWRSQPLFAALDTERRCARVFINRRHQLEWPSGCTLSAQEVYHLIAPIDEREAFPDRNPG
>NZ_CP006579.1|WP_041204136.1|412088_413705_+|glycosidase
MKQGRLRHGGLIGAALLLTACGSGGGGSGSETQPPVVNPPPTSDSRACYGDDQPACNLRTYQVMVESFVDGDGSANYGVGYGPSRHNGDLQGIIDSLDHIKSLNVNAIWLTPVFDSCAGQAGDDRLDATGYFACDFFNVDPNFGSNAQLKKLVEAAHQRGLYVFLDGVFGHVNKVGVSKPSPEGRLPALASGGAGYPGQLVDYSQPESLAYFKEVARYWIEQYGIDGWRLDQAYQLGLDDWRAIRTEVEQASAARKAAGQQWGTLGYMVGELWKGADEIRAQAYGSSDNPALSSAFDFPLRYGLVQALAVEESGKGGQGASVLDASWNKVENYPNHAMPNLMLGNHDLVRFGDLLERGNFNQADYWQRHKAAFSFLAARSGPITLYYGEEFGDEVPGFAAQVSGDCAAQGLCDDHVARSDGKVPGVTGFTPSVEQAELKQWLGQLLALRAAHPALYQGERVKLVADGSVYGDIKQTAAEQIVYLLNLSTTPQSYALPVGKLRSGSALVDLQSGESLALGGSSLTVDLPPLSGRFLLLQ
>NZ_CP006579.1|WP_025325519.1|413765_414302_-|MgtC/SapB-family-protein
MMTTQWWDIAPLGWNNILACLVCGGLVGLERQLHGKPVGIRTSSLIVLGTYCFLAIGAAVSPQSADQARVLGQLITGIGFLGAGVMMTRDGQVLGVTSAATIWMLAALGALIGMGMLHQAVLLTGVTLGILVGVHYLETSFKSLRRGVHNRLEHWRNGNERGAPASPRQEELGSGLEK
>NZ_CP006579.1|WP_025325520.1|414326_415769_-|RimK-like-ATPgrasp-N-terminal-domain-containing-protein
MSTYVIVEELGDWPCHADYLLTARTYLQHGVPTTGGRPRIINLCRSLEHLSAGYYCSLLAQARSHHCLPGLQAISRLQPQQPPAKLWRKLQGWLTRQSEDRIRVRAIFGQCEQSELGGLARYYYGLSQLPLQELTLKRGRHGWSVRQQQSLSPLALSQSERELMLQHAQALVGTGGEEQTAPLYQLAILMDQNDGRASSDALAIERFIQAAAAQGIQAEILAPSAIERLPEFDTLWLRAETAVGHYTFEFARRAEQLKMPVIDSSRAILACSNKLYLYELMVRSGVPMPPTMVVTRRGRHQVDELVQRLGLPLMVKVPDGAQGRDLAMASDETQLTRLLDEGLGRSALLLVQSRIPAEFDWRIGFLDGSPLFACRRYRPEPGNRIRRRKHPLDMSRIEALPLNEVPERVLQTARRAVHQLGNGLFGVDLRQQGQGCVLLEIIDNPWIRGDIEDREAKDLYERLARAFRQRLENRGQSAAG
>NZ_CP006579.1|WP_025325521.1|415955_416429_+|GNAT-family-N-acetyltransferase
MLTVRAARTDDLGAIVKLERYCFPPEVAFGRSRWHYLLSHAKGRTLLLMDEKAQLMGYLSVLEHRGWDRLIIQTLAIRWTVRRQGWARRLLEQVILEGREAGWGAIRLEVADANPEAQTLYHRLGFRPRLRLPDYYGPGQHAHRLVLALRSDEQGVA
>NZ_CP006579.1|WP_025325522.1|416459_416705_+|DUF3624-family-protein
MSCDDCLATAIRARLGRCPICAIQTFVIGAVGWLVWWWCGADTSVNALTGLLFALGGSGLLLLHLSVFLWRKVTGRELDNE

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Crispr_ID: NZ_CP006579_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006579_5

437087-437198

Orphan

Consensus_repeat	Method
ACCTTGATTTCATATGCCACGGATAAGGGTTTCCAATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006579_5

>merge|NZ_CP006579|5|437087-437198|CRISPRCasFinder
ACCTTGATTTCATATGCCACGGATAAGGGTTTCCAATGCCTTGAGATCCTCGGCTGCCTCGTTGTCACGGAGCACCTTGATTTCATATGCCACGGATAAGGGTTCCCAATGC

>NZ_CP006579|5|5|437087-437198|CRISPRCasFinder
ACCTTGATTTCATATGCCACGGATAAGGGTTTCCAATGC	CTTGAGATCCTCGGCTGCCTCGTTGTCACGGAGC
ACCTTGATTTCATATGCCACGGATAAGGGTTCCCAATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006579.1\|WP_025325551.1\|447582_447873_-\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|223799
NZ_CP006579.1\|WP_025325534.1\|427818_428244_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025325539.1\|434389_435319_-\|o-succinylbenzoate-synthase	unknown	unknown	gnl\|CDD\|235345
NZ_CP006579.1\|WP_025325537.1\|430047_432792_-\|collagenase	unknown	unknown	gnl\|CDD\|366791
NZ_CP006579.1\|WP_025325538.1\|432969_434379_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236363
NZ_CP006579.1\|WP_041204143.1\|435318_436179_-\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	unknown	unknown	gnl\|CDD\|180958
NZ_CP006579.1\|WP_025325541.1\|436265_437033_-\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	unknown	unknown	gnl\|CDD\|236855
NZ_CP006579.1\|WP_025325549.1\|445489_446884_-\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|225723
NZ_CP006579.1\|WP_025325543.1\|438932_440252_-\|isochorismate-synthase	unknown	unknown	gnl\|CDD\|273127
NZ_CP006579.1\|WP_025325544.1\|440461_441367_+\|1,4-dihydroxy-2-naphthoate-polyprenyltransferase	unknown	unknown	gnl\|CDD\|235695
NZ_CP006579.1\|WP_025325550.1\|447141_447555_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025325533.1\|426626_427538_-\|triacylglycerol-lipase	unknown	unknown	gnl\|CDD\|224001
NZ_CP006579.1\|WP_025325545.1\|441653_443792_+\|carbon-starvation-protein-CstA	unknown	unknown	gnl\|CDD\|184976
NZ_CP006579.1\|WP_041204141.1\|428948_429893_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|225500
NZ_CP006579.1\|WP_025325532.1\|425880_426630_-\|lipase-chaperone	unknown	unknown	gnl\|CDD\|234937
NZ_CP006579.1\|WP_025325546.1\|443851_444049_+\|YbdD/YjiX-family-protein	unknown	unknown	gnl\|CDD\|225434
NZ_CP006579.1\|WP_025325552.1\|447963_449343_-\|ATP-dependent-RNA-helicase-DbpA	unknown	unknown	gnl\|CDD\|236977
NZ_CP006579.1\|WP_025325548.1\|445201_445420_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025325547.1\|444175_445198_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|183183
NZ_CP006579.1\|WP_025325535.1\|428267_428882_+\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|223678

Protein	Function_ID	Function_description	E-value
NZ_CP006579.1\|WP_025325551.1\|447582_447873_-\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|223799	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only].	2.94457e-08
NZ_CP006579.1\|WP_025325539.1\|434389_435319_-\|o-succinylbenzoate-synthase	gnl\|CDD\|235345	PRK05105, PRK05105, O-succinylbenzoate synthase; Provisional.	4.27563e-69
NZ_CP006579.1\|WP_025325533.1\|426626_427538_-\|triacylglycerol-lipase	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	1.5234e-62
NZ_CP006579.1\|WP_025325538.1\|432969_434379_-\|AMP-binding-protein	gnl\|CDD\|236363	PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional.	1.65702e-132
NZ_CP006579.1\|WP_041204143.1\|435318_436179_-\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	gnl\|CDD\|180958	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.	0
NZ_CP006579.1\|WP_025325541.1\|436265_437033_-\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	gnl\|CDD\|236855	PRK11126, PRK11126, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional.	2.48574e-93
NZ_CP006579.1\|WP_025325549.1\|445489_446884_-\|PepSY-domain-containing-protein	gnl\|CDD\|225723	COG3182, PiuB, Uncharacterized iron-regulated membrane protein [Function unknown].	2.58032e-123
NZ_CP006579.1\|WP_025325543.1\|438932_440252_-\|isochorismate-synthase	gnl\|CDD\|273127	TIGR00543, Salicylate_biosynthesis_isochorismate_synthase, isochorismate synthases. This enzyme interconverts chorismate and isochorismate. In E. coli, different loci encode isochorismate synthases for the pathways of menaquinone biosynthesis and enterobactin biosynthesis (via salicilate) and fail to complement each other. Among isochorismate synthases, the N-terminal domain is poorly conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	1.56907e-100
NZ_CP006579.1\|WP_025325544.1\|440461_441367_+\|1,4-dihydroxy-2-naphthoate-polyprenyltransferase	gnl\|CDD\|235695	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated.	3.32177e-101
NZ_CP006579.1\|WP_025325537.1\|430047_432792_-\|collagenase	gnl\|CDD\|366791	pfam01752, Peptidase_M9, Collagenase. This family of enzymes break down collagens.	2.5491e-84
NZ_CP006579.1\|WP_025325545.1\|441653_443792_+\|carbon-starvation-protein-CstA	gnl\|CDD\|184976	PRK15015, PRK15015, carbon starvation protein CstA.	0
NZ_CP006579.1\|WP_041204141.1\|428948_429893_-\|YdcF-family-protein	gnl\|CDD\|225500	COG2949, SanA, Uncharacterized membrane protein [Function unknown].	3.57799e-96
NZ_CP006579.1\|WP_025325532.1\|425880_426630_-\|lipase-chaperone	gnl\|CDD\|234937	PRK01294, PRK01294, lipase secretion chaperone.	1.36118e-14
NZ_CP006579.1\|WP_025325546.1\|443851_444049_+\|YbdD/YjiX-family-protein	gnl\|CDD\|225434	COG2879, COG2879, Uncharacterized small protein [Function unknown].	2.00633e-34
NZ_CP006579.1\|WP_025325552.1\|447963_449343_-\|ATP-dependent-RNA-helicase-DbpA	gnl\|CDD\|236977	PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional.	0
NZ_CP006579.1\|WP_025325547.1\|444175_445198_+\|GTP-binding-protein	gnl\|CDD\|183183	PRK11537, PRK11537, putative GTP-binding protein YjiA; Provisional.	1.19171e-95
NZ_CP006579.1\|WP_025325535.1\|428267_428882_+\|superoxide-dismutase	gnl\|CDD\|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	3.33916e-106

>NZ_CP006579.1|WP_025325541.1|436265_437033_-|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase
MASSTDLPTLVLLHGLLGDGRDWQPVIEAMPGIDCHALDLPGHGSNKGLRVSGFDEAHEWLCGELAARGITRYQLAGYSLGGRLALYHASQSPAGLQALLLENCHPGLPVTERAARLEHDEGWARRFEHEPLAQVLADWYRQGVFADLDEEARGRQMAKRLGNEGRAVATMLRATSLGKQPDLAPWLGKTRLPVRWISGSRDHKFHRLACQLVKQGCNINHLALDGGHNLHASQPDTFARLLRDWVKQPEKKSHD
>NZ_CP006579.1|WP_041204143.1|435318_436179_-|1,4-dihydroxy-2-naphthoyl-CoA-synthase
MIEAMTEAELYAPIEWQDCSAGYEDILYHKSRDGIAKITINRPQVRNAFRPRTVKEMLQALADARYDDQVGTIILTGFGEKAFCAGGDQKIRGDYGGYRDDEGTHHLNVLDFQRDIRTCPKPVVAMVAGYAVGGGHVLHMMCDLTIAADNAQFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRMYDAQQALDMGLVNTVVPLAELERETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNEKRRPDFSKYKRNP
>NZ_CP006579.1|WP_025325539.1|434389_435319_-|o-succinylbenzoate-synthase
MTLALYRYQLPFTQPLTFHGKVEVAREGLLVRINDGWGEIAPLPGFSRESLAEAQAESLACLAQLAQGQTIAPRLPSVQFGLDCARRHWPQQSTSLPEPYPLIQGSPQELLKNWKQWLHETPLKAKLKVARYPMRDELALIRLLLDRRPNLKLVLDANQGWTREEAWAFCGHLDPNRIEYLEDICADFADIAFVANRTGMPVALDELLAQGKPWEPIPQLKALVLKPTLLGSLANSEALVARARELKLKVIVSSCFESGVGLGQLARLAGEWAPDQAPGLDTRRWLARDLLDKQGQPDPSLMTPLFHRD
>NZ_CP006579.1|WP_025325538.1|432969_434379_-|AMP-binding-protein
MPPVRAADASLETCPVRHWARTAPERIAIHGSGSLSYRRLDARLNGLCKQLEQAGLKAGDRLAAVVRGALEDVLLAWACVRSGLVFCPLNPAFPLVRQAELAAQLDACAFWSAGEIPVGSWSPLRLDFMGELPASEEAWPLEPAQLNNMILTSGSSGTPKAVVHRLANHLASARGSASLLPLDADCGWLLSLPLFHVGGYAILSRVFLAGASLVLDDRTQPLKERLERQPITHLSLVPTQLWRLLAQGFDPGRTRLRELLLGGAAIPEPLVNHLKALGFTPKSSYGLSEMGSQVCTGLPAGAGVVGRPLPGREVSIRQGEICVRGDTLFAGYFQAGELVLPLDEEGWFHTRDKGHFTPGGELVVEGRLDNLFISGGENIQPETIEQRLVDHPAVAQALVVPIPSAQWGQRPAVFIDWLAEPVPHTELASWIRAALPGFMVPDRWLPWPDLGGSLKPSRPLLARSLQAGD
>NZ_CP006579.1|WP_025325537.1|430047_432792_-|collagenase
MNHLSTRLLLLAAPGLLATSALATYSPDWQEYQLKDQSSRQLGDSLTEVTYELSARNGDAPYQQLRVYRRFDWRGANLAALAEQQCGEPQLKVEQGWQIRYLSCEEVVPAGKAIPASSYDYGYGLKQGRWEPLAGTPTAPRQDALPLPERIVLGHSEQELERCELNAQGRCAEQLWQYQPQDWQQLSVLEETPNERDGRLEQIFFRLQPVPGSQAASQVRELHVWRQYSWQLDESRAQQECDEPQTRQEGDKTISYRVCRQTLPAGSEVQVMLKDSGYQYPVGGSEWQTLPETTEWQESRVLNRPIVLASKEEQLDCRRADGRACSEPEQPGTELLDADATRIVQDASGQPAPVWQENYGHDDTKLLAVSRGIQSLLAANQPAHPAMKLLLEYVRAHNYHNYGKHKEDGPAAAEALAEALTALGAHPLLFPEQASDEVGAVMGAWSIALHGQFKSPAVQSRFGTLLGQFNQMLAYSTLHASEINGQHAWATGLFDLLNFLDFASDYSDPFAADFRQQDGELRKQLHALGMSELSLWQGRDGADLFLLNNVLDAYTRLYRVARYTRPGESENYRTLLDGSVIDLIRHHGLIPGGQQSQDLLEEMSLTLSTYYLTYTDRTGEACISGDFAGLCTPIRLEDVLPFEHTCSPTLRLRAQELSQDQADGICRELGAEEEQFHQQMETGWQPVADDNNEALELVIFNSSADWKRYGSALFGGVSTDNGGIYIEGDPARPGNQARFFAYEAEWKRPAFQVWNLRHEYVHYLDGRFNQYGSFGHYPLNRTTWWSEGLAEFIAHGQCFARGMDNVAGRPETERPSLADILHLDYDKGGEMVYSWSYTVHRFLNETGRGASWLAMAQALRNPDRQQAMSAFEAELDQLIANDSEAYQSWLSRDLLPWWDANKESDECKANDSAH
>NZ_CP006579.1|WP_041204141.1|428948_429893_-|YdcF-family-protein
MAPCHLLLQTRTAPRMKKFAKILLACLCLLLASVAALLGYSEWTVSDARHYTYDDVDAVPYNRVALVLGTSKYLIGGSPNHYFKYRIKAAAELYNNGKVDYILVSGDNATVQYNEPRQMRRALIQAGIPASAIYSDYAGFRTLDSIVRAKEVFGQARFTVVSQAFHNERAIFIARHFGIEAVGFNALDPSAYQGIKTRVREVFARLMGLLDLYVLDKGPKFLGEPIVIGGPVPCQALSTIGASQPCLPIPAKTTAAKAAPSKPLDKAVGVASAAVATSIATVTSSAAATTEASAVAATDADKATSAATATHAAP
>NZ_CP006579.1|WP_025325535.1|428267_428882_+|superoxide-dismutase
MSHTLPALAYAYDALEPHIDALTMEIHHSRHHQTYITNLNAALAELPELAALPVDELLTRFYNLPASVQGAVRNHGGGHANHSLFWQVMSPQGGGEPTGELAEAIARDLGGLDAFRQAFTQAALSRFGSGWAWLVVDKAGHLQVVSSANQDSPLMEGLVPVLGLDVWEHAYYLKYQNKRPDYIAAFYQVIDWAEVARRYRQALA
>NZ_CP006579.1|WP_025325534.1|427818_428244_+|hypothetical-protein
MAHWKAQTLSGNRHFDAGEYARALDCYQQALWLARQQFACWPDADEAVAALVVAHHNLADLLVAMTLPDRAADLLCHVHDCLLATSQSPTSPDPLRAAALRHTRSTRTELLAFVRKHGTQDAIQRCLGQCLCQAESAHQLH
>NZ_CP006579.1|WP_025325533.1|426626_427538_-|triacylglycerol-lipase
MKRWLLVLLCALPMLGQGAGYTQTRYPIVLVHGLFGFDRLLGVDYFYGIPQALTRDGARVYVAQVSATQSSELRGEQLLRQVQQVLAITGADKVNLIGHSHGGPTIRYVASVAPELVASATSVGGVNQGSEIADLVRARVAPGSVAEQLAVAAASALSGVISLLSGGSDLPQDPLASLDALTSAGAQRFNLRYPEGLPGQHCGEGPLLADNGVYYFSWSGRGTMTNILDPVDPALALTGSFFHEPNDGLVGVCSSHLGKVIGTGYRMNHLDEVNQSFGIHHLFDTDPVTLYRQHANRLQRLGL
>NZ_CP006579.1|WP_025325532.1|425880_426630_-|lipase-chaperone
MRRILLIALSLGAALLGALLLWPEPTPDLAAAPERGALRHQLAQRLELGETDEEDPMLARYRQFLRAEGSLTVPTDPGLASLQLLFDERERLRRQHFSPAEQASLFAEERLMEQWTLRRKALAEADAADRVMLGEELALWLAEQPQWFREAEANGRLLGDLQRLEQVSPAERDAVLLEQLGPEAVDRLHQLAQSQQGFEQQLTGYLAELEPLLPLDRAEQQQAILARWFEPGQWRRVEALTRLRLGERP
>NZ_CP006579.1|WP_025325543.1|438932_440252_-|isochorismate-synthase
MLAQTHLKQQLDALRHSNVSGFVRLRVAANVDLFPGWLAAQTLYPRIYWQARGPRSPEYVALGAIHELTRPADIQQVCDLANAGSEDSPRYYGGLAFDPAQPGWQGFGPCRFVLPRIELVRRGECVSLCLNLWLTDGNLDAELQAAEAALDALQPEAPLPPLQKHLWQRQDVPGQAQWQTLVERVTSPAFQAHTPKVVLSRESVLTRQHGDDPLCPWALLTQWASHAPECFHFGFQFSPEQSFISCSPERLYRRESGHLFTEALAGTIRRSGDEAADAALAAELLADSKNRLENRLVHADILSRLAPLTTDATLTEPRILKLRLLQHLKCDIEAELKPEVCDWQLLAALHPTPAVGGAPREAALAFIREYEPYQRGWYAGACGMLSRETSEFSVAIRSARITTRGISLFAGAGIVAGSEPAAEWAELDNKIANVLSLLG
>NZ_CP006579.1|WP_025325544.1|440461_441367_+|1,4-dihydroxy-2-naphthoate-polyprenyltransferase
MTNTFSVWLLAARLRTLPLACSSILLGSGLAASRGAFDGAIMGLSLLTAILLQILSNLANDYGDAVSGADNGERIGPQRAVVSGLITRHQMCIAMGLTALAAVVSGLSLLVCAFGEQWQQILTFILLGGAAIVAAITYTVGKTPYGYRGFGDISVFLFFGLLGVLGSYYLFTHTLQWDLLLPATACGLLATAVLNINNVRDIESDAASGKITLAVRLGRNRAIAYHWGLLGAALLATIAFLLTQPASIWPWIFLPAIKPLTDAARTLRESFDGEVLTGALKKTAISAFLFSLLLSVGLALS
>NZ_CP006579.1|WP_025325545.1|441653_443792_+|carbon-starvation-protein-CstA
MDSLGKHLGWGLLALLGASSLGYIALNRGEQINALWIVVAAVCVYLIAYRYYGLFIAKRVLAVDSSRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMLWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELIKSEMGPVAGVIALVATFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLAIFMGIYTRYLRPGRIGEVSIIGLVCLIFAIVSGGWVAESETWAPYFDFDGVQLTWMLVGYGFVASVLPVWLLLAPRDYLSTFLKIGTIIGLAIGILVTQPTLQMPALTQFVDGTGPVWAGDLFPFLFITIACGAVSGFHALISSGTTPKMLANENQACFIGYGGMLMESFVAIMALVSACVIDPGVYFAMNSPMAVLAPAGTADVVVSAAAVVSSWGFQITPETLTRIASEVGEQSIISRAGGAPTLAVGMAYILHGALGGLMNVAFWYHFAILFEALFILTAVDAGTRAARFMLQDLMGVISPSLKRTDSLPANLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGMALMLCAVVLFKMKRQAYAWVALLPTSWLLICTLSAGWEKTFSDNPKLGFLAIANKFQAMIDSGTIPAQYTELQLAQLVFNNRLDAGLTIFFMGVVVVLAGFSLKTALKALQNPQPTANETPYQAMPTQQGAARPQSDDDTDDDSDLAPSLK
>NZ_CP006579.1|WP_025325546.1|443851_444049_+|YbdD/YjiX-family-protein
MFDTLAKAGKYLGQTARLMVGVPDYDNYVQHMRLTHPEQTPMSHDEFFRERQDARYGGKNGGRCC
>NZ_CP006579.1|WP_025325547.1|444175_445198_+|GTP-binding-protein
MTNAVAVTLLTGFLGAGKTTLLNHFLRHHADASVAILENEFGAANIDGALLEGGSGVSVVELGNGCVCCSVRGEFRAALSDLLARRATGELQFERLIVETTGLADPAPIIQTFFVEEALRDALRLDAVITLADCEHIGRQLDEHPVAAAQLGFADRILLTKTDRVDGATREAAIARVQGINPRAQIIDIVRGECPAGLWLDLDAFTLSDELSLSQGIKIVRGSGQGVEAFAPLSARPRSWQDVISAHLFEGGELDLKKIGAFMEQCIEQYGNDMLRYKGVLAIAGEPRRLIVQGVHRVAGFDYGSPWGDEVPCSRLVVIGRYLPLEALEEGFALTRPEEK
>NZ_CP006579.1|WP_025325548.1|445201_445420_+|hypothetical-protein
MRESLKKKIIQVCHQKITQKGEGVGVSFYAFFANRNDDPELLMEAATWWIQTQKLDHFEKARKIIALVETMK
>NZ_CP006579.1|WP_025325549.1|445489_446884_-|PepSY-domain-containing-protein
MKHQDASYYQRIWRWHFYAGLFVAPFLILLSLTGILYLYKPQLDNLLYPELIKVTPATQALSADQLLAKAKIAMPDASLRKYLPPVATDASAQLIVNQGDRELTLFMDPASGVLLGTMDNKWNLQAVARALHAELLLGTTGDRLIELAAGWGIVLLVSGLYLWWPRKGPGVGGILWPRMNQRGRLWWRDLHAVVGFWGAGFLLLLLLSGMTWTGFWGDRFANVWNRFPAAMWNEVPKSAPLARTLNHAHEQTVPWAVENTPMPSSQPAPESHDHSAMNHGGEHDGMVMASHRIPLQRVVEIATERGVHPGYSITPPVGDTGVYTIALFADDPRNDATLHIDQYSGKVLADVRWQDYGPVAKTVETGVMLHTGKLYGWPHQLVMLLICLMVLASSVSGLWIWWSRRPRGRLAAPPLPAKLPPMGGAIAVLVLLGICFPLVGASMLVIWLLDCLFFSRRTAVAPAS
>NZ_CP006579.1|WP_025325550.1|447141_447555_+|hypothetical-protein
MHLQPHGHFEMQRQGQLLICRPSGPFNLAGAMAYEAAFSQQIAGLRDAPWGIVEVATEFEAAGPEVLTRFRRQFGWCAANGCAFLAVVVVGGFKRYLADQVFSDLPFRAVGYFEQEAAAIHWLGERLGTSPGDRTGT
>NZ_CP006579.1|WP_025325551.1|447582_447873_-|YkgJ-family-cysteine-cluster-protein
MIQAIQTDVSCQNCEACCCRLEVMLFTDTGVPDRYVLDREGEIPVMRRLEDGWCAALDRNTMMCRIYEVRPLICREFEMGEPDCIDERDKWFIKLE
>NZ_CP006579.1|WP_025325552.1|447963_449343_-|ATP-dependent-RNA-helicase-DbpA
MNNSEFSSLNLSPALQENLTSLGYLQMTPIQAQSLPLVLEGKDLIAKAKTGSGKTAAFALGLLSRLNVNRVDVQALVLCPTRELADQVAQEIRRLARALPNVKLVTLCGGTPTAPQSATLSFGAHIAVGTPGRILKHLEQGTLELSSLETLVLDEADRMLDMGFGEDINKVISYAPERRQTLLFSATYPEGIAQMSRGVQRNPVEVSVESLHEGSAIEQKLYEVPAGQRLDALTWLLGHYQPSSCVVFCNTKRACNDVADHLAAKGFSALALNGDLEQRERDQVLVRFANGSATILVATDVAARGLDIKELGAVINYELTYDPEVHVHRIGRTGRAGQQGLALSLYQPNEAQRVNLIEEYQQAPMPLGDLDTIGRDIKPIAPQMVTLSIDAGRKTKVRAGDILGALTGEGGIAGADVGKIQISEQYSYVAVKRQVASAALKRLQEGKIKGRTYRARKLG

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Crispr_ID: NZ_CP006579_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006579_6

485649-485752

Orphan

Consensus_repeat	Method
ATGAGTGATGCTATCGAGCTCAGTCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006579_6

>merge|NZ_CP006579|6|485649-485752|CRISPRCasFinder
ATGAGTGATGCTATCGAGCTCAGTCTGTTGGATGAAGTAGAGCGCCAACCAGCTCCCGAACCGAAAGAGATAATCACATGAGTGATGCTATCGAGCTCAGTCTG

>NZ_CP006579|6|6|485649-485752|CRISPRCasFinder
ATGAGTGATGCTATCGAGCTCAGTCTG	TTGGATGAAGTAGAGCGCCAACCAGCTCCCGAACCGAAAGAGATAATCAC
ATGAGTGATGCTATCGAGCTCAGTCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006579.1\|WP_025325584.1\|489167_489380_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_041204161.1\|491025_491277_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025325575.1\|478699_479287_+\|esterase	unknown	unknown	gnl\|CDD\|182945
NZ_CP006579.1\|WP_041204416.1\|489482_490256_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP006579.1\|WP_025325583.1\|488113_488485_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025325574.1\|477867_478686_+\|3',5'-cyclic-AMP-phosphodiesterase	unknown	unknown	gnl\|CDD\|182997
NZ_CP006579.1\|WP_025325589.1\|492026_492929_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025325591.1\|493714_494245_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025325588.1\|491473_491689_-\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|182532
NZ_CP006579.1\|WP_025325576.1\|479289_479913_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|240029
NZ_CP006579.1\|WP_025325590.1\|492939_493701_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025325579.1\|480683_481550_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP006579.1\|WP_025325586.1\|490502_490877_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025325572.1\|476447_477089_+\|ADP-ribose-diphosphatase	unknown	unknown	gnl\|CDD\|182682
NZ_CP006579.1\|WP_025325577.1\|479950_480352_+\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NZ_CP006579.1\|WP_041204160.1\|480448_480691_+\|DUF1656-domain-containing-protein	unknown	unknown	gnl\|CDD\|377931
NZ_CP006579.1\|WP_148297604.1\|488481_488886_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025325573.1\|477393_477840_+\|DUF1249-domain-containing-protein	unknown	unknown	gnl\|CDD\|182921
NZ_CP006579.1\|WP_025325581.1\|483680_485576_+\|DNA-topoisomerase-IV-subunit-B	unknown	unknown	gnl\|CDD\|235501
NZ_CP006579.1\|WP_025325580.1\|481551_483567_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|377393

Protein	Function_ID	Function_description	E-value
NZ_CP006579.1\|WP_025325575.1\|478699_479287_+\|esterase	gnl\|CDD\|182945	PRK11071, PRK11071, esterase YqiA; Provisional.	3.59858e-89
NZ_CP006579.1\|WP_025325576.1\|479289_479913_+\|NUDIX-hydrolase	gnl\|CDD\|240029	cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	7.23387e-63
NZ_CP006579.1\|WP_025325574.1\|477867_478686_+\|3',5'-cyclic-AMP-phosphodiesterase	gnl\|CDD\|182997	PRK11148, PRK11148, cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional.	2.01029e-144
NZ_CP006579.1\|WP_025325588.1\|491473_491689_-\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|182532	PRK10540, PRK10540, osmotically-inducible lipoprotein OsmB.	2.96918e-09
NZ_CP006579.1\|WP_041204416.1\|489482_490256_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	7.04049e-05
NZ_CP006579.1\|WP_025325579.1\|480683_481550_+\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	5.59142e-83
NZ_CP006579.1\|WP_025325572.1\|476447_477089_+\|ADP-ribose-diphosphatase	gnl\|CDD\|182682	PRK10729, nudF, ADP-ribose pyrophosphatase NudF; Provisional.	1.7248e-114
NZ_CP006579.1\|WP_025325577.1\|479950_480352_+\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	1.42194e-22
NZ_CP006579.1\|WP_041204160.1\|480448_480691_+\|DUF1656-domain-containing-protein	gnl\|CDD\|377931	pfam07869, DUF1656, Protein of unknown function (DUF1656). This family contains bacterial proteins, many of which are hypothetical. Some proteins in this family are putative membrane proteins.	6.11071e-06
NZ_CP006579.1\|WP_025325573.1\|477393_477840_+\|DUF1249-domain-containing-protein	gnl\|CDD\|182921	PRK11039, PRK11039, DUF1249 family protein.	3.31167e-59
NZ_CP006579.1\|WP_025325581.1\|483680_485576_+\|DNA-topoisomerase-IV-subunit-B	gnl\|CDD\|235501	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.	0
NZ_CP006579.1\|WP_025325580.1\|481551_483567_+\|FUSC-family-protein	gnl\|CDD\|377393	pfam04632, FUSC, Fusaric acid resistance protein family. This family includes a conserved region found in two proteins associated with fusaric acid resistance, FusC from Burkholderia cepacia and fdt-2 from Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.	1.36955e-148

>NZ_CP006579.1|WP_025325581.1|483680_485576_+|DNA-topoisomerase-IV-subunit-B
MSTQYNADAIEVLNGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHARTLEVILHEDQSLEVIDDGRGMPVDIHPEEGVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNALSDRVEVTVRRDGQVYDIAFERGDKVQELTITGTCGRRNTGTRVRFWPEARYFDSPRFSVSKLEHLLKAKAVLCPGLTIKFLDKNTGIKLEWCYEDGLKDYLVDAVKQFTCLPEQPFVGAFSTDQSAVDWALCWLPEGGECLAESYVNLIPTALGGTHVNGLRQGLLDAMREFCEFRNLLPRGVKLTPEDIWDRCAYILSVKMQDPQFAGQTKERLSSRQSSAFVSGVVKDAFSLYLNSNTELAEQIAEICISSAQRRMRAAKTVVRKKITQGPALPGKLTDCNCADPMQGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVEAGQVLASQEVHDISVAIGLDPDSEDLSGLRYGKVCILADADSDGLHIATLLCALFVKHFRTLVNKGHVYVAMPPLYRIDIGKEVFYALDEDEKNGVLQRVEAEKKKGKVMVTRFKGLGEMNPKQLRETTMDPNTRRLVQLTMGELEEGDETLQLMDMLLAKKRAPDRREWLEEKGNLAII
>NZ_CP006579.1|WP_025325580.1|481551_483567_+|FUSC-family-protein
MRVSLWRRTPWGQASTGQWRYALRNALAMCLSLWLAFVLQLDSPYWAMTSAAVVSFPTVGGVISKSLGRVLGSLIGALAAVVIAGLGLSDPWLFSVLIALWLGFCTYASNHYQNNVSYAFALAGYTAAIIAFACVNVDDPRHIFDIAQARVSEVITGILCGAFMMMLLPSTGDGETLLGSLRQSQARLLEHAQLLWQQQSGAEVRHAHQGIISQILTMNVLRIQAMWSHHRFRRHNRLFNFLLHRQLRMTGLISGVRRLLHNWESPPPELESLLTALPKALAEPGCDKLRIARLLAPLARSGDYRARTFWQRLRQFCWCYLEVQLWLDRLAGAQQEDLPMRWPAPPRLRSLAMHTDSYEAAYNGGRTALCVLLGCIFWFQTQWGSGSSALTLLSISCVLYSAVPAPLKSVTTMLQAIVLLSLGCFLVKFGLMIRLEALWPFLILLLPALLTMQLLKQQRPASAALWGQLIVLLGSFLAITNPPSYDYQDYINGSLGQMLGVMVAGLAFQILSPSSDRRKSRRLIRRLRRDFMDQLMPSPRQSEHEFESRVYHAVSQLSQGKDQLARLWVLRWGVVLLNCSHIAWQLRQWRGKDPALYLVRDGCIRCLKGILTEGGVQHGSLGHTLAELRRIEQGLALHREPAARDLAGLVWRLESALSQLLQALPETSDAR
>NZ_CP006579.1|WP_025325579.1|480683_481550_+|HlyD-family-secretion-protein
MVKSLLATLKYLSTLLVCALALVALWWLWNYYMQGPWTRDGKVRAELISITPEVSGKIIAIPVRDNQLVKRGEVLFNLDPEPYRIALDNATASLAKARSDLDKAEHEASRRQNLSRTVISAEAVDEARLNAQAMKAAYQVAEANLEQARWSLTKTTIKAAGDGYITNLQARVGNYASAGVPLVALVDIHSFYVQGYFEETKLRHIQVGRPAEVMLYSTDQVLKGEVESLGRAIHDQSLEGSDSLLLDVKPNVPWMRLAQRVPVRIRLLEVPPELALIAGTTCTITLGE
>NZ_CP006579.1|WP_041204160.1|480448_480691_+|DUF1656-domain-containing-protein
MPIGSTPLPTPSVLPDLILGASLYFPPLFKAVLLGLLGWLPVHHLLRDWLYGGEVWHPLLMDLSLFILAVSGALWILVHG
>NZ_CP006579.1|WP_025325577.1|479950_480352_+|GFA-family-protein
MIKQIGNTPIQDKHRASCHCGALVLELSLPDGVVDPRRCDCSLCRRRGAIVASVPLSGIRILQGEEVLRCYQFNTRTAKHYFCGVCGIYTHHQRRSNPAEYGYNLACLEGVNPFELGEVPLRDGINHPADRLV
>NZ_CP006579.1|WP_025325576.1|479289_479913_+|NUDIX-hydrolase
MQPPLAAFLEQVLATAQAGLTYSQDPFDIARFEALRAATAALIASQSDLKLDAIASWIALDEGYPTPKLDVRALILDDAGRLLLVQERSDGLWTLPGGWCDIGDSPAGAVVREVVEETGLECRAVQLLALFDKHKHPHPPQLPHAHKAFFLCEVTGGALLGETDETQGAGYFPIDALPALSHHRVVESQLQSLYAHVRQGRRETLFD
>NZ_CP006579.1|WP_025325575.1|478699_479287_+|esterase
MTPVLLYLHGFNSSPGSAKAQQMAAWVAEHRPDIEVLIPAQPNTPAAAWEAIEGVIAEARARHDGRLRLGAVGSSLGGFMATRVSELHGCRAALINPAVRPHELLCDYLGPQHNPYTDERYELLPTHMDELRALAVPVSAPERLWILQQQEDEVLDYRKALREYEFARLSLECGGNHAFVGFERYPAQIVRFLGL
>NZ_CP006579.1|WP_025325574.1|477867_478686_+|3',5'-cyclic-AMP-phosphodiesterase
METELPQAPDGSVRLLQITDTHLFASAEGRLLAVRTAESLAAVLEQVQANGHPFDLILATGDLSQDHSPESYQRFASMMAPLARPIYWLPGNHDDGPLMTEYLHAAGISEAKQLVGDHWQVILLDTQVRGKPHGVLGDHQLAALDSALRQHPERHALIALHHQAVPVGCAWLDQHNLKNADDLFAVLARHPQQKTILFGHVHQEFDEVHQGVRLIASPSTCIQFKPLSDGFALDESGPGWRYLTLHPDGRIASQVWRLPVGQFVPDPNATGY
>NZ_CP006579.1|WP_025325573.1|477393_477840_+|DUF1249-domain-containing-protein
MPLVQSPMKRYVPDLMSLQRTCEVNYMALMKLLPPGGSVGAERRYQVGNGLQFQLTVSEESRFTSQVILAQHNPELPSYLQARIEIRLYHDVRMAEVCAAQQISMLQPRYDYPNKKMHHRDEKEQVNLFLADWLRFCLKHGTSLINIL
>NZ_CP006579.1|WP_025325572.1|476447_477089_+|ADP-ribose-diphosphatase
MSQQALPQTSHYSGDDVKIIDKSSGYNGFFKVNVYRLQHRLFAGGWNEPIVRELFERGHAAALLPYDPVRDQIVLVEQFRIGAIETSPTPWLLELVAGIIDEGETAEAVVRREAVEEAGIEVGRCEHAISYLVSPGGSTERIEVYVGEVDASQAAGIHGLAEEGEDIRVHVVSREQAYAWLKEGRIDNAASVIALQWLALNHGELQARWLAGR
>NZ_CP006579.1|WP_025325583.1|488113_488485_-|hypothetical-protein
MSGIMNYLDYISLALGVIGVLLSLFNFMIREKAERELRKEFLKTAIKQNELQRMKRLKNTIEKGELPDEKLLSSYIRILESSSNSLNKREIESMSNIINKTSTANYSYIFKLLNELLQERRAH
>NZ_CP006579.1|WP_148297604.1|488481_488886_-|hypothetical-protein
MAKRIPGLPNAWQEYLTCILLHLILPIVPIFLEYSVKSSISALTATLAAAMYTISIGLSSKSKAIFAICVILCIFYIFKYGSLLSIADTTKHTDGYALWAIFCAFLMHLLERYNIHVADRQPFWIFSNSEGARA
>NZ_CP006579.1|WP_025325584.1|489167_489380_+|hypothetical-protein
METEKAIGLIEAHGAFHGDHYSFNSDEFVQWCREDTHQPLSLEQANHELAPFCIRVGFAEPIRSWRYYLT
>NZ_CP006579.1|WP_041204416.1|489482_490256_-|CPBP-family-intramembrane-metalloprotease
MPGLNDGDSYGFERKSAGDFPFYRQPPNALSGRSWVLILLGVVLGFAVLTAHLAFYKTTAGGFVSAILFPLIPLAVLAMVAGKAWRALFRTPTGRDLLLMLAIAVVNILVSVAVALVLQQLFKMSDNPVSAMLAEAPNTARILFYLKTAPQLFGEEVVSILPFLAILWFCHTKLGLSRKSAIIIAWLSTALIFGAMHLPTYDWNFLQCFLVIGTARIVLLSGYIITKNIWVSTGAHIINDWLLFTGMVLLHGAQAGV
>NZ_CP006579.1|WP_025325586.1|490502_490877_-|hypothetical-protein
MTQESIQTRYKLDPPLVNPAELEQAIARAIEANKQDFFPLLEQLVDVGDSRVKLSQKDPLRVLGVELDGALTGGSARLSYESNFADSCRLIDEYDQHQTSVAFTLDGDALVFDFELPIEWNFNN
>NZ_CP006579.1|WP_041204161.1|491025_491277_-|hypothetical-protein
MQQIIDAVKQEFPLYQPDTFRCGPDNSCIGCPKKLMELVDTDLCYWQYQIDRGIPPSFDELNRFGKMCKNIRRALVRNGRIHA
>NZ_CP006579.1|WP_025325588.1|491473_491689_-|glycine-zipper-2TM-domain-containing-protein
MNKLHGLARGTVAMALLIGLAACSGMSQQGKSTAVGAGIGAVGGSVLTGGSAAGTIGGAVVGGVIGHEIKK
>NZ_CP006579.1|WP_025325589.1|492026_492929_-|hypothetical-protein
MQLVIREANEGPFLTQVLRFGAERELLSAQQLAAIKGKAVLMSLKFADKYYNKYKMHLLEQAAHDVIGVVSLGLQELSGRDTARALALLQAPEGPIKPFQKGWSMLISVSPRQTGNSLYGDVDARLLDKISSPPDVEEWQGWQEYEKALTEHNKVRLMGLIDQHFFACESDHPTMEDKLAEALLYRILCGKGSGAAPLKVKQDLKRRLAREIELDEAWYDTAHLTAQLALMLAELPADMADALRQELSPGFVPNLLHTLGFVRQYQQQQRENASPEKLDNIEMRAGLRHPLLGWPLYHDF
>NZ_CP006579.1|WP_025325590.1|492939_493701_-|hypothetical-protein
MNSLIEITAIEIKELAVVEPKQASEKFELIAKTMSDEQLAEVIENIDIVTLTQINGQHDISFPSIISELMTPERIRDIVCQQPLYWEEAIKNNAEELQQHTFDFLNYLIRTQDSEAKQTEILECIAEDPAGLFYLAIPFIEFYRGDRYEDEEGFGDVLHAEEEDLEESLRYSERQQAEGTHDYPLDDPRSLLMLIREQAPEVEKAIKSLLRSENATWEGIINKFANELVMQAKEKNQVSDEYDEVDDMFSFLD
>NZ_CP006579.1|WP_025325591.1|493714_494245_-|hypothetical-protein
MQKKWDQARLKALQSDASENIESYRDQDQPKALEQFTGKMKALLLADISMLEFMPEYLPLALYGRVQFPPKAKPQWARWLADGVQPSWDEFKVSVAFNNADLPLVKAVRAQSEDQLIEACAVLYLLDNPLPRGGRHADDDYELQDDEDDDGEDADADYHGGDGEEDDQDMYDEVRF

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Crispr_ID: NZ_CP006579_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006579_7

758997-759077

Orphan

Consensus_repeat	Method
GGTTGCGGCAGGTAGCAGCGTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006579_7

>merge|NZ_CP006579|7|758997-759077|CRISPRCasFinder
GGTTGCGGCAGATAGCAGCGTCCAGCCAGCAGGCGATGGTCACTCTGTCGGCTGGCCCGGCTGCGGCAGATAGCAGCGCCC

>NZ_CP006579|7|7|758997-759077|CRISPRCasFinder
GGTTGCGGCAGATAGCAGCGTCC	AGCCAGCAGGCGATGGTCACTCTGTCGGCTGGCCC
GGCTGCGGCAGATAGCAGCGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006579.1\|WP_025325823.1\|766137_766701_-\|DUF2799-domain-containing-protein	unknown	unknown	gnl\|CDD\|378521
NZ_CP006579.1\|WP_025325820.1\|763005_763629_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225222
NZ_CP006579.1\|WP_025325818.1\|761431_761662_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025325811.1\|752839_755017_+\|1,4-alpha-glucan-branching-protein-GlgB	unknown	unknown	gnl\|CDD\|235445
NZ_CP006579.1\|WP_025325821.1\|763796_765035_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340888
NZ_CP006579.1\|WP_025325816.1\|759772_760777_-\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176190
NZ_CP006579.1\|WP_025325817.1\|760975_761401_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP006579.1\|WP_025325809.1\|749226_750222_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|185323
NZ_CP006579.1\|WP_025325814.1\|757677_758817_-\|chromate-efflux-transporter	unknown	unknown	gnl\|CDD\|273350
NZ_CP006579.1\|WP_025325805.1\|743184_743991_+\|tol-pal-system-protein-YbgF	unknown	unknown	gnl\|CDD\|182745
NZ_CP006579.1\|WP_025325824.1\|766899_767739_+\|isopenicillin-N-synthase-family-oxygenase	unknown	unknown	gnl\|CDD\|226022
NZ_CP006579.1\|WP_025325808.1\|748251_749118_-\|D-hexose-6-phosphate-mutarotase	unknown	unknown	gnl\|CDD\|185697
NZ_CP006579.1\|WP_025325810.1\|750567_752757_+\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|236831
NZ_CP006579.1\|WP_025325806.1\|744600_746706_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP006579.1\|WP_005324594.1\|761806_762124_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225653
NZ_CP006579.1\|WP_025325812.1\|755016_757158_+\|glycogen-debranching-protein-GlgX	unknown	unknown	gnl\|CDD\|131155
NZ_CP006579.1\|WP_025325819.1\|762218_762695_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP006579.1\|WP_025325807.1\|746847_747921_+\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NZ_CP006579.1\|WP_025325813.1\|757214_757607_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|376583
NZ_CP006579.1\|WP_025325822.1\|765278_766100_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|182523

Protein	Function_ID	Function_description	E-value
NZ_CP006579.1\|WP_025325823.1\|766137_766701_-\|DUF2799-domain-containing-protein	gnl\|CDD\|378521	pfam10973, DUF2799, Protein of unknown function (DUF2799). Some members in this family of proteins are annotated as yfiL which has no known function.	1.09606e-24
NZ_CP006579.1\|WP_025325820.1\|763005_763629_-\|transcriptional-regulator	gnl\|CDD\|225222	COG2345, COG2345, Predicted transcriptional regulator [Transcription].	9.04584e-55
NZ_CP006579.1\|WP_025325822.1\|765278_766100_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	5.78973e-80
NZ_CP006579.1\|WP_025325811.1\|752839_755017_+\|1,4-alpha-glucan-branching-protein-GlgB	gnl\|CDD\|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0
NZ_CP006579.1\|WP_025325821.1\|763796_765035_+\|MFS-transporter	gnl\|CDD\|340888	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of the eukaryotic proteins MFSD9, MFSD10, MFSD14, and SLC46 family proteins, as well as bacterial multidrug resistance (MDR) transporters such as tetracycline resistance protein TetA and multidrug resistance protein MdtG. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. TetA proteins confer resistance to tetracycline while MdtG confers resistance to fosfomycin and deoxycholate. The Solute carrier 46 (SLC46) family is composed of three vertebrate members (SLC46A1, SLC46A2, and SLC46A3), the best-studied of which is SLC46A1, which functions both as an intestinal proton-coupled high-affinity folate transporter involved in the absorption of folates and as an intestinal heme transporter which mediates heme uptake. MFSD10 facilitates the uptake of organic anions such as some non-steroidal anti-inflammatory drugs (NSAIDs) and confers resistance to such NSAIDs. The SLC46/TetA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.13525e-40
NZ_CP006579.1\|WP_025325816.1\|759772_760777_-\|NADP-dependent-oxidoreductase	gnl\|CDD\|176190	cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.	2.27609e-166
NZ_CP006579.1\|WP_025325817.1\|760975_761401_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	4.54291e-21
NZ_CP006579.1\|WP_025325809.1\|749226_750222_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|185323	PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase.	0
NZ_CP006579.1\|WP_025325814.1\|757677_758817_-\|chromate-efflux-transporter	gnl\|CDD\|273350	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family. Members of this family probably act as chromate transporters, and are found in Pseudomonas aeruginosa, Alcaligenes eutrophus, Vibrio cholerae, Bacillus subtilis, Ochrobactrum tritici, cyanobacteria and archaea. The protein reduces chromate accumulation and is essential for chromate resistance. [Transport and binding proteins, Anions].	1.44341e-65
NZ_CP006579.1\|WP_025325805.1\|743184_743991_+\|tol-pal-system-protein-YbgF	gnl\|CDD\|182745	PRK10803, PRK10803, tol-pal system protein YbgF; Provisional.	8.55823e-65
NZ_CP006579.1\|WP_025325824.1\|766899_767739_+\|isopenicillin-N-synthase-family-oxygenase	gnl\|CDD\|226022	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only].	4.03819e-37
NZ_CP006579.1\|WP_025325808.1\|748251_749118_-\|D-hexose-6-phosphate-mutarotase	gnl\|CDD\|185697	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.	6.53352e-114
NZ_CP006579.1\|WP_025325810.1\|750567_752757_+\|4-alpha-glucanotransferase	gnl\|CDD\|236831	PRK11052, malQ, 4-alpha-glucanotransferase; Provisional.	0
NZ_CP006579.1\|WP_025325806.1\|744600_746706_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.6734e-63
NZ_CP006579.1\|WP_005324594.1\|761806_762124_+\|hypothetical-protein	gnl\|CDD\|225653	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown].	0.000215846
NZ_CP006579.1\|WP_025325812.1\|755016_757158_+\|glycogen-debranching-protein-GlgX	gnl\|CDD\|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP006579.1\|WP_025325819.1\|762218_762695_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	4.14903e-47
NZ_CP006579.1\|WP_025325807.1\|746847_747921_+\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	0
NZ_CP006579.1\|WP_025325813.1\|757214_757607_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	2.47461e-73

>NZ_CP006579.1|WP_025325814.1|757677_758817_-|chromate-efflux-transporter
MGQVFLQFLWLGCISFGGPAAHIGYFQRTFVQRLGWLSQAEYAQLLALCQLLPGPASSQLGFAIGRHRAGPGGALAAFIGFTLPSFLLLLVAAIGVGQLGNNLWLDAALHGLKLLALVVVADAVLTMSRQFCKTVLQQGVMVTTAAALWWQPGLLTQLGMLLGAALLCAQREAAGAPPAAPQARRAPHWPTLLLFALLFVGLPLLAQGPASQLIADFYRAGSLVFGGGHVVLPLLQESVGHSLSQQQFLTGYGLAQLVPGPMFTLASYLGAQLLPAAPLAGALLATLALFLPGFLLLWALGPCWQSWLAHPRLAGAVAGINAAVVGLLLAALYQPVWQSAVLAPADLALAAVAFYLLRVIRLPILALAALLVGAGLLLI
>NZ_CP006579.1|WP_025325813.1|757214_757607_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MNGNNPEQWRSKLSAEQFHVCWEKGTERPYSGALLHNRKSGDYLCVCCKSVLFHADAKFDSGCGWPSFDRAIEGTVTYTEDRSHGMARVEITCSQCGSHLGHVFPDGPTETGQRYCVNSLSLDFEPDMDA
>NZ_CP006579.1|WP_025325812.1|755016_757158_+|glycogen-debranching-protein-GlgX
MFVMENGVDYPLGARLDEAGCHFCVWAPQSDKVELCLFDEQEQELVRLALPGRRGQYRFGYVRGVRAGQRYGYRVHGMPQEGMLFDPDKLLIDPYARALSRATRWDDDLYQGDSAAMVAKSVVVDDAFDWQGVGKPGIPPERVVLYETHVKGFTRQHPGVPEALRGTYLGVSHPLMIEHLLSLGVTSVQLMPVAAFMSEPRLEQLGLTNYWGYNPIAFFAPEPRYGAGEAVTEFKTMVRELHRVGLEVILDVVYNHTAESGVDGPMLSLKGFDNAGYYAFETGAHGPDYQRHANVTGCGNSVNLDHPNSLRLVLDALRYWVTEMQVDGFRFDLAVTLAREAGEFDPMSAFFKALLAEPVLARVRLIAEPWDIGPFGYRLGQFPSQWLEINDRYRDTVRAFWRGDAGKMGDFATRLAGSRDLFPKNWRSPHTSVNYLCYHDGFTLEDLVSYNQRHNQANGEDNRDGHGNNLSYNHGVEGPTLDPRVNNLRQQQKRNLIATLLLSQGTPHFLAGDEMGRSQLGNNNAYCQDNQISWVNWQLRPEDERLLAFTRQMMALRAESGVFANLQLNDDEWNGKATSCHRVNWYHPDGHQLTDQDWHAPMGQAFAMDIGMLACGGERWYVLFNASDYDIQFRLPPPGEGLEWIQTIDTATNDGLPFLPDDIKRQVAVGRAHSLKLLERVSLPAVALAKEGVVATPDVAAVLPTGSQFPLAG
>NZ_CP006579.1|WP_025325811.1|752839_755017_+|1,4-alpha-glucan-branching-protein-GlgB
MPVERLVAARCADPFSHLGLLANPDGPGLKLTAWLPDALEVRVRDLKSGKIVATLTSADEAGLFETVFTRRKNPFPYQLIASYPDASAESIDPYQFQAAAWEGLAELGFQPENLYHTLGAQLRTVEHLGQRVEGVRFAVYAPSATAVSLIGDFNFWDGRRHPMQRSQCGHWVLFVPGLKAGDRYKFELKDPAGHRLPHKSDPVGFYCEQYPSFASVIHDHEQYQWQDAAWRESQRNDKREQPLSIYELHVGSWKRHPNGDSLNWRELAVELVNYVTEMGYTHIELMPVSEHPFSGSWGYQPVGMFSPTSRYGSADDFKHFVDACHQAGIGVILDWVPAHFPADAHGLARFDGTPLYEYEDPRRGWHPDWNSYIYDFGRNNVRQFLVASALFWLDKFHIDGLRVDAVASMLYLDYSRNAGEWVPNVDGGNHNYEAISLLKWTNEEVYGKYPHTMTIAEESTAFAGVSRPTFLGGLGFGFKWNMGWMHDTLSYMQKEPIHRRYHHNEMTFSMVYHYDENFILALSHDEVVHGKHSLLYKMPGDEWQQAANLRAYMGFMYGHPGKKLNFMGTEIAQSNEWNHDAQLPWHLLQYPKHGGQQRLIRDLNQLYRHEAALYQADYERGGFRWLDHNDADNSIFAWLRADKQGANPVVIASNFTPVPRLAYRLGVPEAGRYAVVLNTDSEHYWGSNYDVGLTFVAEPTPWQGMAHSIVLDLPPLATLFIKQES
>NZ_CP006579.1|WP_025325810.1|750567_752757_+|4-alpha-glucanotransferase
MTTLIEQLAAAKGIASEYVDAWGHPAQVSEESKAAMLGAMGYRVDDEAALTEQLEQEHRQHWLRPLDPVMVVRSGDPLSLEVRLPIEFVNDALHWQIVLEQGALLSGQLTPIEGELVGVAEFEEMECQAYRVALDVQPELGYHQLMLLEEGNDEPLATMRLIVAPKSCYKQAPIANGRKVWGPSVQLYCLRSRHNWGIGDFSDLGQLVEKAAAWGAHFVGLNPIHALYPANPESASPYSPSSRRWLNVAYINVEAVPEFLANERLKADVASPAFQQHLASLRAKENVDYTGVIQTKIGMLRQVFDEARFSAERQAAFDAFVAAGGDSLQQQAAFDALQAHFYGKGENAWGWPVWPDAFRDYHNPAVAAWMQDHSQDVNFYLYLQFLADEQLAQADARAKAAGMVMGIYRDLAVGVSEGSTEIWANRDLYCPKASVGAPPDILGPLGQNWGLPPMNPNQLFEAAYQPMVDLFRANMRACGALRIDHVMALLRLWWVPPGASAAKGAYIYYPVNDLLGILALESHRNQCLLIGEDLGTVPEGIDVTLKENGVHSYKVFFFERSKGDGGFISPAHYTEQAMSALTTHDMPTLKGFWHCDDLALGRELGLYPDEEVLKTLYADRHQAKQRILDSLHAHGVISGNISHDVNWVGMNTELNHGLQLHMSRGSCALFSTQLEDWLEMDKPVNVPGTSYEYPNWRRKLSKDLEDIFADEALKALAGKMSQARDEASR
>NZ_CP006579.1|WP_025325809.1|749226_750222_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTIKVGINGFGRIGRFVFRLAAERADIEVVGINDLIDVDYMAYMLKYDSTHGRFNGTVEVKDGNLIVNGKTVRVTAERDPANLKWDAIGVDVVAEATGLFLDDATARKHIAAGAKKVVLTGPSKDATPMFVMGVNDATYAGQDIVSNASCTTNCLAPIAKVLNDTFGIESGLMTTVHATTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGVVIPELNGKLTGMAFRVPTPDVSVVDLTVNLKKAATYAEICAAMKAASEGSMKGVLGYTEDQVVSTDFLGERQTSVFDAKAGIALNDKFVKVVSWYDNEMGYSSKVLDLIAHISK
>NZ_CP006579.1|WP_025325808.1|748251_749118_-|D-hexose-6-phosphate-mutarotase
MQPTRTLTAHCTLSHPAGGQPLLTINNEHARAEISLFGAHVLRYQRHGEPASLWLSDKAVLDGSKPIRGGIPLCWPWFGPSPARVGSGKPAHGFARTSLWTLDGVSDHGDGTLVHLSLRDTDASRALWPHAFELELDVLVGKELSLVLTTRNTGKTPLTYNAALHTYLQISRPEAVSVTGLGEPYADKLTGQDGQQQGALTLTAAIDRVYHQAEAMVMVKDGDRTTKVVSGNNDSVVVWTPWLEGATAMADMSDDGYRTMLCVEAAITVDAGITVVPDEEHSFSTVII
>NZ_CP006579.1|WP_025325807.1|746847_747921_+|quinolinate-synthase-NadA
MSNALSSVPPVIEMDYPFPVKPAPLTAEQKASLIIEIKALLEARQAVLVAHYYTDPEIQALAEATGGFVGDSLEMARFGRDHAAQTLIVAGVRFMGETSKILSPHKRVLMPTLEAECSLDLGCPIDQFSAFCDAHPDHIVVVYANTSAAVKARADWVVTSSIALEIVEHLDSQGHKIIWGPDRHLGAYIEKKTGAEMLRWQGHCIVHDEFKAKALRELKAQNPDAAVLVHPESPASVIELADAVGSTSQLIKAARELPQQKLIVATDRGIFYKMQQACPDKEMVEAPTGGDGATCRSCAHCPWMAMNGLVAIKEALTDGAERHEILVDEELRVKALIPLDRMLNFAAELKLKTQGNA
>NZ_CP006579.1|WP_025325806.1|744600_746706_-|methyl-accepting-chemotaxis-protein
MKQRSLKTKLLLLTLGLFLASGVAMTLMQSASLNTLRNDIMTQTSGALEQEVSRTLQFQAERYAVQIADLLQQSYQIPLGIAAQLEGSMAQPDLMPSRPQVELLLGSRLRQADGISSIYAQFEPDGYDGQDASWQTGATHSVAGKGSLEVYFTREQNGQIAQQRIDAATSEAKFDTSRNEFGIRNSEWYLCGRDSLRPCLMEPYLYEISPGKQMLMTSLTVPILKEGKFVGITGVDMNLPIFQQLAERLGKSLYDNQAEVTLVSKMGFIVGSNRHADKLGRPLTEAGLVAPDGKPRDSDSDFILQQPIKIDAADSQWWLMIKVPKALALSQANTISNQLGSLLQATQQQQLMAMVVITLVALGLLVWFIQSITAPLSLISRHVSHLASNEGDLTQQMRIDTHQELIELGRHLNAFLGKLRAMVQGSKQVGQQVHQQARGMKQTANAMRSSLDEQSLELESVVSAMHEMSTTAVSVAGYAEQAAQESEAATHHIQTAQQSLNRARGEIHTLVEDMHQADKAVAQVAQRSTNISHILDVIRAIAEQTNLLALNAAIEAARAGDMGRGFAVVADEVRALANKTRASTDEIGQLIGSLQAEVSSSQQLMSTGITRSVSTVEGTEQAFEALNQVVSQIQQIHDHISQVATAAEQQSAVSDTINQNLMRIGDTATSLGQEASASHLLSEELEQAATTLASELERLHT
>NZ_CP006579.1|WP_025325805.1|743184_743991_+|tol-pal-system-protein-YbgF
MKFVSKQAAISMAVLFAVSAHAAAPVSDLGGDSGSGVVLSGNNGAIVPTGSLEDRVALLERTLNARLRLQAELQQQVDSLQGEVSELRGQLEQQTYQMEQSQERQRQLYQELDKVANSQPAAAAPATPAAGATTPAAAANYSTNQDENQAYDAAVNMVLKEKNYDKAIPAFEGFIKQFPSSSYVPNAHYWLGQLMFNKGDRAGAASQFSTVANKYSKSPKRADALLKLGMLAQLDGKKAEAKTFYEQVIKGYPNTSPAQLAKQSLGKL
>NZ_CP006579.1|WP_025325816.1|759772_760777_-|NADP-dependent-oxidoreductase
MTPISHQIQLLRRPTGLPAQSDFILKEVPLPALQEGEVQVANQWLSVDPYMRGRMSEAKSYVPPFPLNGPLDGGAIGTVQASRHPDFKVGDQVSSMLGWRDAFVAKGEQLTRLPTTTLPSQLFLGALGMPGMTAWAGLHKVARLQAGETLLVSAASGAVGTMAVQLAKRAGARVIGSTGSADKVAYLKTLGADAVINYRETPDLDAELARLAPEGIQVYFENVGGAMLDAALNNMALHGRIVLCGLIEQYNSNGEAKGPRNLSQMIRKRILMQGLLVSDHWQHYGDFLAEAIPAFEAGALQAEETISEGLASMPQAFIGLFEGRNTGKMLVKLN
>NZ_CP006579.1|WP_025325817.1|760975_761401_+|MarR-family-transcriptional-regulator
MSELKKQVCFALYSASNAVMRAYRPLLDKLDLTYTQYLVMLSLWARDEVSLKEIGQETGLDAGTLTPIVKRLESKGWLTRTVSSEDERQKCIRLTEAGRQLQQGVRECCLGDNLRNQVDLADAELAELKRLCDRVATQLGR
>NZ_CP006579.1|WP_025325818.1|761431_761662_+|hypothetical-protein
MKPWLPLFALLLSGCAGGPHSPSELQIDDADAWQALCKDGVRVRAVTDEGICADHRGLAMWTNKPRAVRMAEEAAK
>NZ_CP006579.1|WP_005324594.1|761806_762124_+|hypothetical-protein
MQSSIVGLSILWGLASFGVQGDFIESRDSVAPSWQAESRVEMEGYLIESLGEDRWVFDNGSESLLVSLPEGQWVSEGERLRLSGEPQQEQAGWLLQVQDVSQVGV
>NZ_CP006579.1|WP_025325819.1|762218_762695_-|Lrp/AsnC-family-transcriptional-regulator
MLKLDRIDRHILELMQENGRISNLELAELVGLSPSPCSRRVKALEDAGLIDTHVTLLNARQLGLTLTAYIHISMDRHTPERFENFDRAIQDLPEVLECDLITGNDADYQLKVVVRDMEHYQHFLLDKLTHISGVTGVRSSFVLRRIKHKTALPLNHLG
>NZ_CP006579.1|WP_025325820.1|763005_763629_-|transcriptional-regulator
MNASTDKILYLLKTMGPQSAAALGEQLQMTSMGARQHLTALEADGWIGFSDEARGRGRPIRLWHLTEQAWQRFPDTHSELTLQLIDDVQQLFGESGLEQLIARREQQMLSRYQAGLTQPALADRLAALKELRSREGYMADMSQEEDGSWLLWESHCPICAAARACRGFCRSELALFRQLLAPAGVEREQYLLDGDRRCLYRIRPPQA
>NZ_CP006579.1|WP_025325821.1|763796_765035_+|MFS-transporter
MEGIKGQATLWVLVMTVTLAVAGFSLPSPVLAPLMLDPAQGMLTPQASDWSRKLWLGVIMGLYPLFQLLGAPWLGKLSDRHGRKPVLTLCLVGVLAGYVLMALGIAWRSLPLLLLSRVVEGFFNGDIAIVQAMAADMSTTRTKARNFARINIGMNLGWVLGPMIGGYAAVVSGDYSLAAWLAVAMTVGNLLLVLWLLPNRPPAPAEQELASLSTRQLLLQPRLLPYFVLTLLSYGAVQLYFTYFNVWLVERLAWDPVQLAQAAVLVSVPMMLGSWLGAQLARHWRGSSLGIVGHLVMAAGMLMFILPTQWWGLALTFIPAGIGMSLGELATSVAISNRSHASQQGQAMGIYRGLAVGSEILAVVLGSLALLAGTEWPFYLAAICGVICAFGFYGLRRRADRRSALAACAEPG
>NZ_CP006579.1|WP_025325822.1|765278_766100_+|Cof-type-HAD-IIB-family-hydrolase
MSRFQAIALDMDGTLLTRDHKISSATRAALAQARAHGIKVLLVTGRHFMTARPFHHELALDTPLICSNGAYLYDPAQGRILAGDPLAVAPLTALLAEVQAQQMGALFHLDGGIGYLGCEEHVGRMRRWSANQPDHLKVSLLPAEDIDSWLQKPIWKLELFNQDPGLLHRFVGEVVQKLPFTQDWAAPYAVELVQPGCSKGNRLAQWAASEGIAMEKVVAFGDNNNDISMFEQVGLAVAMGNAAPQIQAHADRVTADHNEDGIALALQRWVLPS
>NZ_CP006579.1|WP_025325823.1|766137_766701_-|DUF2799-domain-containing-protein
MSPKILLLTLPLLLAGCSSLSEEECRAMSWYNQGYQDGEQGKTRTATRDYKQTCGEYGLRVDEDEWQRGYAKGLELYCIPELAYSKGREGNEYLGVCPNDTSFLTQFERGRKEFLLEQRLGELQQELERTERTIYQLEQQIRGESDSKQRDYYRAQRERAIRHYEGVRRDYNRIRFPDRVIQFSFGS
>NZ_CP006579.1|WP_025325824.1|766899_767739_+|isopenicillin-N-synthase-family-oxygenase
MKVLTVDYRSPDAAERFTESLRTTGFGVLTHHPIPKELVQSIYDNWYRFFMSEQKQDFLFNRETQDGYFPPSVSEVAKGNTQKDIKEYFHLYPWGQMPEELRAQAMEYYRLANDLAAELLSWVEQYTPADIAARYSCPLSSMIEESQKTLLRVLHYPPFDGTEAPGAIRAAAHEDINLLTILPAASEPGLQVKGSDGEWMDVPCDFGTLIINIGDMLQEASHGYYPSTTHRVINPTGGSVSRSRISLPLFLHPRPDVVLSERHTAHSYLMERLRELGVI

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Crispr_ID: NZ_CP006579_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006579_8

965467-965578

Orphan

Consensus_repeat	Method
CAGCGGCTGCTGGTGGTGGGCAACGGCATGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006579_8

>merge|NZ_CP006579|8|965467-965578|CRISPRCasFinder
CAGCGGCTGCTGGTGGTGGGCAACGGCATGGATGATGAGATGGACCATCACTGCGTCGAATCGCCCGAGAGGATTGAGAAACAGCGGCTGCTGGTGGTGGGCAACGGCATGG

>NZ_CP006579|8|8|965467-965578|CRISPRCasFinder
CAGCGGCTGCTGGTGGTGGGCAACGGCATGG	ATGATGAGATGGACCATCACTGCGTCGAATCGCCCGAGAGGATTGAGAAA
CAGCGGCTGCTGGTGGTGGGCAACGGCATGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006579.1\|WP_025325970.1\|957694_960319_+\|nitrate-reductase	unknown	unknown	gnl\|CDD\|239155
NZ_CP006579.1\|WP_025325978.1\|968540_969632_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182165
NZ_CP006579.1\|WP_025325975.1\|964519_965341_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NZ_CP006579.1\|WP_025325986.1\|975877_976690_+\|threonine/serine-exporter-family-protein	unknown	unknown	gnl\|CDD\|377697
NZ_CP006579.1\|WP_025325972.1\|961230_961812_+\|ANTAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|377145
NZ_CP006579.1\|WP_025325971.1\|960346_961105_+\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|381169
NZ_CP006579.1\|WP_025325966.1\|955357_955789_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP006579.1\|WP_025325973.1\|962173_963529_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|372585
NZ_CP006579.1\|WP_025325979.1\|969625_970534_+\|pseudouridine-5'-phosphate-glycosidase	unknown	unknown	gnl\|CDD\|377251
NZ_CP006579.1\|WP_025325969.1\|956878_957382_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|349971
NZ_CP006579.1\|WP_025325977.1\|968036_968396_+\|nitrite-reductase-small-subunit-NirD	unknown	unknown	gnl\|CDD\|379380
NZ_CP006579.1\|WP_025325982.1\|973002_973758_+\|DNA/RNA-non-specific-endonuclease	unknown	unknown	gnl\|CDD\|214889
NZ_CP006579.1\|WP_041204207.1\|963543_964488_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_CP006579.1\|WP_025325980.1\|970606_971332_-\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|239398
NZ_CP006579.1\|WP_025325968.1\|956771_956870_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|349971
NZ_CP006579.1\|WP_025325984.1\|974383_974914_-\|molybdopterin-adenylyltransferase	unknown	unknown	gnl\|CDD\|181837
NZ_CP006579.1\|WP_025325981.1\|971781_972759_+\|cytochrome-c-peroxidase	unknown	unknown	gnl\|CDD\|224771
NZ_CP006579.1\|WP_025325983.1\|973932_974346_+\|DUF2541-family-protein	unknown	unknown	gnl\|CDD\|287745
NZ_CP006579.1\|WP_025325985.1\|975317_975656_+\|DUF3135-domain-containing-protein	unknown	unknown	gnl\|CDD\|378640
NZ_CP006579.1\|WP_025325967.1\|955984_956737_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP006579.1\|WP_025325970.1\|957694_960319_+\|nitrate-reductase	gnl\|CDD\|239155	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP006579.1\|WP_025325978.1\|968540_969632_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|182165	PRK09954, PRK09954, sugar kinase.	2.35154e-96
NZ_CP006579.1\|WP_025325975.1\|964519_965341_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	2.72632e-121
NZ_CP006579.1\|WP_025325986.1\|975877_976690_+\|threonine/serine-exporter-family-protein	gnl\|CDD\|377697	pfam06738, ThrE, Putative threonine/serine exporter. ThrE is a family of bacterial and Archaeal proteins that catalyze the export of L-threonine from the cell. UniProtKB:Q79VD1 has been characterized as being necessary for this export. The domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent efflux of threonine and serine.	1.09308e-76
NZ_CP006579.1\|WP_025325972.1\|961230_961812_+\|ANTAR-domain-containing-protein	gnl\|CDD\|377145	pfam03861, ANTAR, ANTAR domain. ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins. The majority of the domain consists of a coiled-coil.	9.56127e-16
NZ_CP006579.1\|WP_025325971.1\|960346_961105_+\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|381169	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT). SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.	2.66632e-104
NZ_CP006579.1\|WP_025325966.1\|955357_955789_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	3.74707e-35
NZ_CP006579.1\|WP_025325973.1\|962173_963529_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|372585	pfam13379, NMT1_2, NMT1-like family. This family is closely related to the pfam09084 family.	1.1584e-107
NZ_CP006579.1\|WP_025325979.1\|969625_970534_+\|pseudouridine-5'-phosphate-glycosidase	gnl\|CDD\|377251	pfam04227, Indigoidine_A, Indigoidine synthase A like protein. Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown. The recommended name for this protein is now pseudouridine-5'-phosphate glycosidase.	0
NZ_CP006579.1\|WP_025325969.1\|956878_957382_-\|RNA-methyltransferase	gnl\|CDD\|349971	cd18098, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU. RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	6.46887e-58
NZ_CP006579.1\|WP_025325977.1\|968036_968396_+\|nitrite-reductase-small-subunit-NirD	gnl\|CDD\|379380	pfam13806, Rieske_2, Rieske-like [2Fe-2S] domain.	3.17609e-42
NZ_CP006579.1\|WP_025325982.1\|973002_973758_+\|DNA/RNA-non-specific-endonuclease	gnl\|CDD\|214889	smart00892, Endonuclease_NS, DNA/RNA non-specific endonuclease. A family of bacterial and eukaryotic endonucleases share the following characteristics: they act on both DNA and RNA, cleave double-stranded and single-stranded nucleic acids and require a divalent ion such as magnesium for their activity. An histidine has been shown to be essential for the activity of the Serratia marcescens nuclease. This residue is located in a conserved region which also contains an aspartic acid residue that could be implicated in the binding of the divalent ion.	7.08971e-56
NZ_CP006579.1\|WP_041204207.1\|963543_964488_+\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	3.23063e-47
NZ_CP006579.1\|WP_025325980.1\|970606_971332_-\|carbonic-anhydrase	gnl\|CDD\|239398	cd03124, alpha_CA_prokaryotic_like, Carbonic anhydrase alpha, prokaryotic-like subfamily. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This sub-family includes bacterial carbonic anhydrase alpha, as well as plant enzymes such as tobacco nectarin III and yam dioscorin and, carbonic anhydrases from molluscs, such as nacrein, which are part of the organic matrix layer in shells. Other members of this family may be involved in maintaining pH balance, in facilitating transport of carbon dioxide or carbonic acid, or in sensing carbon dioxide levels in the environment. Dioscorin is the major storage protein of yam tubers and may play a role as an antioxidant. Tobacco Nectarin may play a role in the maintenace of pH and oxidative balance in nectar. Mollusc nacrein may participate in calcium carbonate crystal formation of the nacreous layer. This subfamily also includes three alpha carbonic anhydrases from Chlamydomonas reinhardtii (CAH 1-3). CAHs1-2 are localized in the periplasmic space. CAH1 faciliates the movement of carbon dioxide across the plasma membrane when the medium is alkaline. CAH3 is localized to the thylakoid lumen and provides CO2 to Rubisco.	1.7835e-108
NZ_CP006579.1\|WP_025325968.1\|956771_956870_-\|RNA-methyltransferase	gnl\|CDD\|349971	cd18098, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU. RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	0.00374034
NZ_CP006579.1\|WP_025325984.1\|974383_974914_-\|molybdopterin-adenylyltransferase	gnl\|CDD\|181837	PRK09417, mogA, molybdenum cofactor biosynthesis protein MogA; Provisional.	3.02099e-122
NZ_CP006579.1\|WP_025325983.1\|973932_974346_+\|DUF2541-family-protein	gnl\|CDD\|287745	pfam10807, DUF2541, Protein of unknown function (DUF2541). This family of proteins with unknown function appears to be restricted to Enterobacteriaceae. All proteins are annotated as YaaI precursor however currently no function is known.	1.68805e-05
NZ_CP006579.1\|WP_025325985.1\|975317_975656_+\|DUF3135-domain-containing-protein	gnl\|CDD\|378640	pfam11333, DUF3135, Protein of unknown function (DUF3135). This family of proteins with unkown function appears to be restricted to Proteobacteria.	3.62516e-26
NZ_CP006579.1\|WP_025325981.1\|971781_972759_+\|cytochrome-c-peroxidase	gnl\|CDD\|224771	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism].	9.4086e-120

>NZ_CP006579.1|WP_025325975.1|964519_965341_+|ABC-transporter-ATP-binding-protein
MKSYLEISDVGVSFETEQGSFEALSRVNLRIEKGEFVSLIGHSGCGKSTVLNLVAGLLEPTLGGIILDGREVAGPGPERAMVFQNHALLPWLSVQQNVALAVGQVESDKRVVAERVDYYLSLVQMDHASQKMPHELSGGMKQRVGIARALSLSPKVLLMDEPFGALDALTRAHLQDALMAIQAELGNTVIMITHDVDEAVLLSDRICMMTNGPSATVGEILTVDLPRPRDRVALADDPHYHKLRQQVLRFLYEKQRKVTPLKAAEKVRSKLRA
>NZ_CP006579.1|WP_041204207.1|963543_964488_+|ABC-transporter-permease
MKRLQWKIIDWKTLVQPLLGVLLFLGLWQWGASQVQTSLGTLPGPLATASQLWSLGQEHLAEREKASAFLERQQVRNAARLATDPAAEVKLRPYTGRPTFFDQIATSLLTVLCGFTLATLIAIPCGVLLGMNQGLYRAANPVIQLLKPVSPLAWLPLITLVVSALYANPSPWLAKSFLTSALTVTLCSLWPTLINTAVGVAGLDGDLHNVSRVLRLSFVTHVRRIVLPGALPMIFTGLRLSLGVAWMVLIAAEMLAQNPGLGKFVWDEFQSGGSASLARIMVAVITIGLIGCALDRGMLALQQWLSWDKRQVLR
>NZ_CP006579.1|WP_025325973.1|962173_963529_+|ABC-transporter-substrate-binding-protein
MKGRQGCTGLLLATLSLPALALGAPEQEELRLGFIKLTDMAPLAVAYERGYFEDEGLYVTLEAQANWKILLDRVIDGELDGAQMLAGQPLAAHIGIGTQAELVTAFAMDLNGNAITVANSVWAAMAPQLPKAKAGQVPPPVSAAALKPVVADYRQGGKPFNMGMVFPVSPHNYELRYWLAAGGLHPGFYAPRLGDNSGQRQAEVLLSVTPPPQMPATLEAGTIAGYSVGEPWNQQAVARGIGVPVITDQEIWRNNPEKVFGVTRQWAERHPNTHVRLVKALLRAAWWLDAEENGNRREAAKLLAKPEYVGADEAVIASSMTGTFEYARGDKRQLPDFNVFFRHHATYPYYSDAIWYLTQMRRWGQIPEAKPDAWFEQVAKAVYQPGVYRQAAEALIAEGKLKATDFPDFASEQGYRGPQDGFIDGLIYDGRHPNAYLQQFAIGLKGDERVQ
>NZ_CP006579.1|WP_025325972.1|961230_961812_+|ANTAR-domain-containing-protein
MTTLPRGQDGPPSRLLIHADDPGQANRLALLVSHYGHQPRILDSRQLLTPMEQGDALLVSCRQFGAEVRLVLSLWPGLPRLLFCERLGGDTQLALLQQGVLLVPHSCGEREPVEQWLRLARSQLAMVQALMQTESELRQKLEERRLVEQAKGRLMRHQGLDEEQAYRLMRSTAMSRHLSLGELARQLLQALPA
>NZ_CP006579.1|WP_025325971.1|960346_961105_+|uroporphyrinogen-III-C-methyltransferase
MSQISLVGAGPGPLELLTLRALHRIETAEVVVYDRLVGSEILARIPQGAARFDVGKRCGEPSPSQEEINALLLALARTGKRVVRLKGGDPLVFGRGGEEALHLARHGIEAELVPGITAALGCAASTLIPLTHRGLARSLTLVTGHLMDEGDYRGWQGLTRAGHTLVFYMGLERAAQIRQGLLAAGASGDLPVALVVAGCSARQQVHHARLEGLEQAALALLGQSPVLMIMGEVVNLGAELQALLNQAMERVA
>NZ_CP006579.1|WP_025325970.1|957694_960319_+|nitrate-reductase
MKTTCAYCGVGCGIRLSRERESWQLQGDEEHPANAGALCVKGASLLESLAFPDRLLYPRWMGQRIGWEEALDTLADRLATIMAQSGPQAIGIYLSGQLTTEDYYVANKLMKGYLGSANVDTNSRLCMSSAVVAHQRAFGEDLVPACYEDLELADLVVITGANTAWTHPVLFRRLQQARARRPELRLVVLDPRRTMTAEQGDLHLALKPGSDVALWNGLCRYLLDSDGWDKAYVAQHVSGFEALAAALDDPAWQLDEVARSCGLSRSDLLGFYQLFARTPRTVTLFCQGINQSNQGVDKANAIINAHLMCGRIGKPGAAPFSMTGQPNAMGGREVGGLATQLAAHMGFGEAECDRVQRFWGSPTMVHGPGHKAVALFEAVHRREIRALWVLGTNPAVSLPDGNRVREALSRCELLVVSEVTANTDTARLAHLLLPAAAWGEKSGTVTNSERTISRQRAFLPLPGEAKPDWWALTQLARRLGFGEGFAYEHEHEIFCEHAALSGFENEGARQFDISGLADLGRAEFEALAPLSWPVNGDWPKGRARLFEDGRFATPDGRARLLPLAQHFPPQPEAASRGEDLSLLLNSGRLRDQWHTMTRTGHVPRLQEAEPWPRVRVGAASLLALGAREGDLVRLYNELGEALLLVGLDEGLREGEAFLPMHWTDSQCSQGAVNRLIAAVVDPLSGQPMFKQGRVQARAQATRWQGLWCGRHEWREPVDWWARRPLPEGNCTLLASWSDSPQGLWQRLGAEGHWLRLPLKEGWLALALAGDRIEGILLVGELRPDIKVELLASLLGTPLQAGALSQTLSLALAGESRLLCSCLRVSEQRIVDAITRQGVSELAGLQALLGCGSNCGTCLPEIDKLLIKHVFIASA
>NZ_CP006579.1|WP_025325969.1|956878_957382_-|RNA-methyltransferase
MKESGYGAAERVDARPDAAPEYCAIGLVNPKSPENVGAVMRAAGCYGAEEVYYTGQRFELARRFATDTKQMVEKIPLLGVEDLLAFVPEGCTPVLVDLIEGATSLPDYEHPERAFYIFGPEDGTLEPARFAAVKEVVYVPTQGCMNLAASVNVILYDRLAKKLRAEG
>NZ_CP006579.1|WP_025325968.1|956771_956870_-|RNA-methyltransferase
MIYVATPNGCMNLTASVNVILYDRLAKKLRAV
>NZ_CP006579.1|WP_025325967.1|955984_956737_+|hypothetical-protein
MVRLFLFCCLLLIWPVRADTLDVYCDDWPGFCQKDGEGVYLDIVRAIYEPEGYVVRPHLVPYKRALAVVSQKGGDMAMGVYRGEVKGAHQPDYPDSADHVSVVMQRRWLPHWDGEYSLKAQEVLWLRGWAFDKFIPVPMRWFEIDSHEMALQLLLKGRYRYYLTDGALYPKDALPPELAQVHLRWIPTYPIFADNEKGRQLHGLWDPGMRTLIREGTLAGIYRENRLYDDYLDFIREQEARVRREAPSQD
>NZ_CP006579.1|WP_025325966.1|955357_955789_-|universal-stress-protein
MPTIKSLLCPVDFSEMSKAVLDYAVFMAQSHQAELKLVHVVDQLHGFDSYKILHMTAIEITHEMERQAKSQLKELVASLPIPAKFEVRFGRAADEIVIQAKEDKVDLLVMGSHGRSGISHLLVGSVAESVVRHAPCPVLVVRK
>NZ_CP006579.1|WP_025325977.1|968036_968396_+|nitrite-reductase-small-subunit-NirD
MKDFKEGTAHPEHGQWHRVCELAALPELAGRSAWLDGRVLALFRLGEHVYALDGVDPLAGVAVLGRGLVGDAGGEPVVASPLYKQRYALMDGRCLDDPALSVACWPVRLEGSEVWVQLG
>NZ_CP006579.1|WP_025325978.1|968540_969632_+|winged-helix-turn-helix-transcriptional-regulator
MTEREQEILALLRQDPMIAQQELADRLGISRSALASHISSLMRQGYVQGRGYVLREGPYAVVIGGANMDICGCSHDNLRIGDSNPGRVRTSAGGVGRNIAENLARLGTDTRLLTAVGNDQYGHHLLEVSQRAGVDVRQVLVLEGQATSCYLSLHDGSGEMSCAVNDMGIIDELTPARLTPLSGFLGAASLWVLDTNLATHTLDWLFERQGEHIIFVDTVSVAKVEKIRPWLHRIHTLKPNRTEAEQLCGFRIAGPDTWPMAAAWFHRAGVQRLFLSLGDQGIFYSDGECQGHLPVLGSPVVNVTGGGDAFMAGLAHAWLQEQGIMETTRFALGCAALTVNCSDTVFSGLSKAAVERMLEEYPC
>NZ_CP006579.1|WP_025325979.1|969625_970534_+|pseudouridine-5'-phosphate-glycosidase
MLNAYLDIQPEVAAALAAGKPVVALESTIISHGMPYPQNVETARQVEQVVRDNGAVPATIAIIDGRLKVGLDAGALEALGKAGHAATKCSRRDIPFVLANKGLGATTVASTMIIAAMAGIRVFATGGIGGVHRGAQETFDISADLQEFAQTPVAVVCAGAKSILDIGLTLEYLETQGVPVIGYQTEELPAFYTRESGFKVDYRLDTPAAIAEALRLKWELGLAGGAVVTNPIPTQFAMPRADIDAAIKQALQEADEQGVKGKASTPFLLARVCELTGGNSLAANIQLVLNNAALGAKIAASL
>NZ_CP006579.1|WP_025325980.1|970606_971332_-|carbonic-anhydrase
MKKSLLAGALLLCPAAFAATAHWEYSGEAGPARWARLTPEFGQCAGSNQSPVNLTALVEAELAPLQFHYLPGGKTLVNNGHTVQVNYAPGSTLQLDGIRFELKQFHFHAPSENLIEGKSYPLEGHLVHANDKGELAVIAVMFEPGSANPALSQTWQALPTKAGETRALKVPLSAEQLLPTQRDYYRFSGSLTTPPCSEGVRWLVMKQPVQVSQAQIDAFKAVMHHPNNRPVQPLNGRLVLQ
>NZ_CP006579.1|WP_025325981.1|971781_972759_+|cytochrome-c-peroxidase
MNKYCLLLALALPGMGWASEPIQAVEAAKVKDPAKVELGKMLFFEPRLSKSNAISCNSCHNLATGGVDNQVSSLGHKWKEGPINSPTVLNSSLNFVQFWDGRAKDLKEQAAGPIENPLEMAFTHKLAVGTLHTLPEYRARFDAVYGKADFGIDEVTDAIAAFEETLITPNAPFDRWLKGDSKALTAQQLKGYQLFKEKGCTACHNGVAIGGNSFQKMGLVKHYQTDNPAQGRGAVTGEPQLIGWFKVPTLRNIALTYPYFHDGAVWDLKEAVQIMADIQLGQRLSEQEADDMTAYLKSLTGEQPQIVLPILPPSRPDTPKPEVKS
>NZ_CP006579.1|WP_025325982.1|973002_973758_+|DNA/RNA-non-specific-endonuclease
MNNINKLVLAIGFTLTTFPTLAAGFQCKDHVALGVPGQSSQLLCREGYAAGYNYDTKASDWVSYRMTATSAQGQVPRKDAFAEDKEVPVQYRATLADYKGSGFDRGHQAPAADMRSTATTMKQSFLLTNMTPQLPALNQGAWRILEEKTRQWAIAYENVQVITGPIFTNSDGAIGNGVTVPHAYYRVVMDVANQEAIAFILPQENVSASRLADYIVTVDAVEEQTGLDFFTALPDEAEEAMESQLMTMWGS
>NZ_CP006579.1|WP_025325983.1|973932_974346_+|DUF2541-family-protein
MSALFSLHLSSPFTRALRILVPMALLGGVVSPAMADDEFRLGKTMLLGVGDHPAIIPVIICRPAKSIMVKAGRELTLDRVKVIYGNDRSKTLHFDKDLKEDQESGWKSLGSRVCIKRIEVYGNSEGSKAGVKVYGRK
>NZ_CP006579.1|WP_025325984.1|974383_974914_-|molybdopterin-adenylyltransferase
MSKARIGIVTVSDRASAGIYEDLSGKAIIDTLDAYLTSEWEPVYQVIPDEQDQIEATLVRLADEESCCLIVTTGGTGPAKRDVTPEATEAVCDRMMPGFGELMRAESLKFVPTAILSRQTAGLRGSSLIVNLPGKPKSIRECLDAVFPAIPYCIDLMDGPYLECDEAVIKPFRPKK
>NZ_CP006579.1|WP_025325985.1|975317_975656_+|DUF3135-domain-containing-protein
MELPDFDTLKHWALAEPERLDALLHQQIEALIAQVGPDRQRRLRGLQFRIDCQRRLARNNLDSCIRIANMMHESVYAMRRHIIQLQETSLAQAEERLPPDNVIVLADHPRNK
>NZ_CP006579.1|WP_025325986.1|975877_976690_+|threonine/serine-exporter-family-protein
MRSITPRRVLSREQQTEITRIIVKVGQLLAQHGAEGRIIEQTTVRLGLALGLESVEMAISASAIVLTSLYQGSCVTTTRRVRDQGINMQVVCEVQRICIMAEKELIGVREVRQRLDGIVPFHYHPWLVVPMVGLSCGAFSLLFGGDWPIFLVTFVASSVAMRVRQLMARHHHSPLINFAATGFVATLIASCATYFQWGDQPYLAMAASVLLLVPGFPLINAVSDMVKGYFNLGLARWGMATLLTISAVIGIVLAMSVTGIWGWKLWWNSI

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Crispr_ID: NZ_CP006579_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006579_9

1080631-1080738

Orphan

Consensus_repeat	Method
GTCACTTGCCGGCGACATTCAAGCCACCGAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006579_9

>merge|NZ_CP006579|9|1080631-1080738|CRISPRCasFinder
GTCACTTGCCGGCGACATTCAAGCCACCGAAACTGATGGATGGAGGAGCATGGCACTCCTTGTCATCCCTTGGTTGTCACTTGCCAGCGACATTCAAGCCACCGAAAC

>NZ_CP006579|9|9|1080631-1080738|CRISPRCasFinder
GTCACTTGCCGGCGACATTCAAGCCACCGAAAC	TGATGGATGGAGGAGCATGGCACTCCTTGTCATCCCTTGGTT
GTCACTTGCCAGCGACATTCAAGCCACCGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006579.1\|WP_025326083.1\|1089735_1090335_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
NZ_CP006579.1\|WP_025326070.1\|1075909_1076263_-\|DsrE/DsrF/TusD-sulfur-relay-family-protein	unknown	unknown	gnl\|CDD\|224470
NZ_CP006579.1\|WP_025326073.1\|1077150_1078512_-\|tRNA-5-hydroxyuridine-modification-protein-YegQ	unknown	unknown	gnl\|CDD\|237969
NZ_CP006579.1\|WP_080675086.1\|1079960_1080338_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319911
NZ_CP006579.1\|WP_025326076.1\|1082046_1083447_-\|TldD/PmbA-family-protein	unknown	unknown	gnl\|CDD\|223389
NZ_CP006579.1\|WP_025326081.1\|1087130_1088861_+\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|182944
NZ_CP006579.1\|WP_025326072.1\|1076900_1077149_-\|YfhL-family-4Fe-4S-dicluster-ferredoxin	unknown	unknown	gnl\|CDD\|235941
NZ_CP006579.1\|WP_193353993.1\|1086469_1087165_+\|thioredoxin-fold-domain-containing-protein	unknown	unknown	gnl\|CDD\|182802
NZ_CP006579.1\|WP_025326069.1\|1074688_1075906_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
NZ_CP006579.1\|WP_025326079.1\|1085778_1086189_-\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|234795
NZ_CP006579.1\|WP_005326662.1\|1078967_1079894_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|182294
NZ_CP006579.1\|WP_025326078.1\|1084764_1085676_+\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
NZ_CP006579.1\|WP_025326082.1\|1089269_1089563_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025326085.1\|1091053_1092019_-\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
NZ_CP006579.1\|WP_025326077.1\|1084049_1084568_-\|flavodoxin-FldB	unknown	unknown	gnl\|CDD\|183471
NZ_CP006579.1\|WP_005326646.1\|1071945_1072215_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP006579.1\|WP_025326068.1\|1072395_1074537_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_CP006579.1\|WP_041204213.1\|1076421_1076814_+\|DUF1090-domain-containing-protein	unknown	unknown	gnl\|CDD\|368932
NZ_CP006579.1\|WP_049828105.1\|1090382_1090889_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP006579.1\|WP_025326067.1\|1070825_1071785_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235333

Protein	Function_ID	Function_description	E-value
NZ_CP006579.1\|WP_025326083.1\|1089735_1090335_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	2.23581e-112
NZ_CP006579.1\|WP_025326070.1\|1075909_1076263_-\|DsrE/DsrF/TusD-sulfur-relay-family-protein	gnl\|CDD\|224470	COG1553, DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism].	1.20127e-39
NZ_CP006579.1\|WP_025326073.1\|1077150_1078512_-\|tRNA-5-hydroxyuridine-modification-protein-YegQ	gnl\|CDD\|237969	PRK15452, PRK15452, putative protease; Provisional.	0
NZ_CP006579.1\|WP_080675086.1\|1079960_1080338_-\|VOC-family-protein	gnl\|CDD\|319911	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a streptomycin resistance protein.	2.41417e-29
NZ_CP006579.1\|WP_025326076.1\|1082046_1083447_-\|TldD/PmbA-family-protein	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	1.15508e-121
NZ_CP006579.1\|WP_025326081.1\|1087130_1088861_+\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|182944	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ.	0
NZ_CP006579.1\|WP_025326072.1\|1076900_1077149_-\|YfhL-family-4Fe-4S-dicluster-ferredoxin	gnl\|CDD\|235941	PRK07118, PRK07118, Fe-S cluster domain-containing protein.	2.85879e-07
NZ_CP006579.1\|WP_193353993.1\|1086469_1087165_+\|thioredoxin-fold-domain-containing-protein	gnl\|CDD\|182802	PRK10877, PRK10877, protein disulfide isomerase II DsbC; Provisional.	1.11258e-25
NZ_CP006579.1\|WP_025326069.1\|1074688_1075906_+\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.34112e-67
NZ_CP006579.1\|WP_025326079.1\|1085778_1086189_-\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|234795	PRK00567, mscL, large-conductance mechanosensitive channel protein MscL.	8.31228e-72
NZ_CP006579.1\|WP_005326662.1\|1078967_1079894_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|182294	PRK10190, PRK10190, L,D-transpeptidase; Provisional.	1.9553e-145
NZ_CP006579.1\|WP_025326078.1\|1084764_1085676_+\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	8.38916e-178
NZ_CP006579.1\|WP_025326085.1\|1091053_1092019_-\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
NZ_CP006579.1\|WP_025326077.1\|1084049_1084568_-\|flavodoxin-FldB	gnl\|CDD\|183471	PRK12359, PRK12359, flavodoxin FldB; Provisional.	6.62949e-121
NZ_CP006579.1\|WP_005326646.1\|1071945_1072215_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	1.62223e-53
NZ_CP006579.1\|WP_025326068.1\|1072395_1074537_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_CP006579.1\|WP_041204213.1\|1076421_1076814_+\|DUF1090-domain-containing-protein	gnl\|CDD\|368932	pfam06476, DUF1090, Protein of unknown function (DUF1090). This family consists of several bacterial proteins of unknown function and is known as YqjC in E. coli.	1.96749e-27
NZ_CP006579.1\|WP_049828105.1\|1090382_1090889_-\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.22432e-13
NZ_CP006579.1\|WP_025326067.1\|1070825_1071785_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235333	PRK05033, truB, tRNA pseudouridine synthase B; Provisional.	0

>NZ_CP006579.1|WP_080675086.1|1079960_1080338_-|VOC-family-protein
MDNTLVWADIPTRDLDRAMDFYSALLDVQVTPIQEEEMRFAMLRHDGSNAAACLGPMDKYHQPGGAGPLIYLSLGDRLQEAEQLVPRLGGRVLEPLHSIGSGHGSRVIIEDTEGNWLALYAPPAP
>NZ_CP006579.1|WP_005326662.1|1078967_1079894_+|L,D-transpeptidase-family-protein
MNPLRIAASALFCTLTLVSQQAAAVEYALPAANSRLIGENQEYVVPADNRPLEQIAADFQLGLTNIMEANPGVDPYLPTPGSKLTIPHQLILPNAPREGIVINVAEMRLYYYPKGKNVVQVLPIGIGQLGVNTPENWITKVERKRANPTWTPTENIRRRYAAQGKTLPAVWPAGPDNPMGLHALYIGNLYAIHGTNATFGIGLRVSSGCVRLRADDIKYLFDNVPVGTRVQFVNQPVKTTVEPDGGRYMEVHEPLSRTEEEFNSTASVPLPMTPATTRFIAHMDSDSNVVKQVLEQRTGMPTRLNPEA
>NZ_CP006579.1|WP_025326073.1|1077150_1078512_-|tRNA-5-hydroxyuridine-modification-protein-YegQ
MFRPELLSPAGTLKNMRYAYAYGADAVYAGQPRYSLRVRNNEFDHENLQLGINEAHALGKQFYVVANIQPHNSKLKTFIRDMRPVVDMKPDALIMSDPGLIMMMREAFPDMPIHLSVQANAVNWATVKFWHQMGLTRAILSRELSLDEIEEIRMQVPEMELEVFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNSCRWEYKVHEGKEDDVGQIVHRQEPIAVRPDNTLGLGKPSDALVLLEESNRPGEYMTAFEDEHGTYIMNSKDLRAVEHVERLTRMGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAVAGRPFDPTLMGTLENLAHRGYTEGFLRRHNHSEYQNYDYGYSVSDTQQFVGEITGRQGDMVEVEVKNKFLVGNSLELMTPQGNISFNLEQMQNRKGELIDTAPGNGHVVYVPVPKEIDINYGILLRNLGDRQDTRQPHSAA
>NZ_CP006579.1|WP_025326072.1|1076900_1077149_-|YfhL-family-4Fe-4S-dicluster-ferredoxin
MALLITDKCINCDMCDPECPNQAISLGDKIYEIDPDRCTECVGHYEKPTCISVCPIDCIIWDPAHVETEEQLMDKFVLMHRQ
>NZ_CP006579.1|WP_041204213.1|1076421_1076814_+|DUF1090-domain-containing-protein
MWKIAGIGLLLLAGQAYGSENVGCKARHQAVTEQLSFARAHDNAQQVAGLEQALRNIETHCTDAGLVEEQQEKVAKQKQEVEERLADLQSARVSGKPDKIAKKQAKLEESQAELLEAQRELEALQKLIKP
>NZ_CP006579.1|WP_025326070.1|1075909_1076263_-|DsrE/DsrF/TusD-sulfur-relay-family-protein
MKQQILIIANGAPYGSESLFNALRLGIALNEQEGTTLTLFLISDAVSAALAGQSPAEGYNLRQMLEILLAQGTVIRLCKSCTDARGITALPLIEGIEIGTLPLLAQWTLAADKVLTF
>NZ_CP006579.1|WP_025326069.1|1074688_1075906_+|MFS-transporter
MSWAYLRQFPPLVWIVILGTFMVRTTFFMVWPFLSILLYRDYGLSATLIGLILGATAALSTLVSFYGGWLSDKWGRRNILLFGCLVSALSVALLGLSHQVIWLAMGVIGSGLSYGLIDSPGKALMADSLAEPKARELALHLRYFLLNLGAAIGPLLGVSYGLSARQETFLLLSVSYLLLGFIFFVGFRLAACQASHAAGPGMRAVLRVLWQDRGFLLLTLANVLLMLVYVQFESPLIQYLTRAGTPEVERLIGWLVSTNALTIVILQFPLLHLTARWPTKRRLQLGVALFLGAQLLFALGNTAIWWHWIVAVILLSVGECILFPLLNVLIDQMAPSHLKGSYFGAASMSGLGVAIGALLGGWILANWGGGWLYALMALLCLVILMLYGLSTRIPRPALVRVSAGS
>NZ_CP006579.1|WP_025326068.1|1072395_1074537_+|polyribonucleotide-nucleotidyltransferase
MNPIVKSFQYGQHTVTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTVNYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVNPAVSPDIVAMIGASAALAISGIPFGGPIAAARVGYMNGQYVLNPTTTELPQSDLDLVVAGTANAVLMVESEAAILSEEVMLGAVVYGHEQMQVVINAINEFAADVGTQPWDWTPPAVNEALKAKVAELATAELGEAYRITEKAVRYAAIGAIKARVVEQVIASGVEEDAKKIGEEFHSLESRIVRGRVVRGEPRIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTERDAQNIDELAGHRADRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSAAEFPYVVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSDILGDEDHLGDMDFKVAGTTQGITALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEAIQAPRAEISDFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTNIELDDDGTVRISAVANEAAMEAIRRIEAITAEIEVNRIYEGKVVRLADFGAFVNILPGKDGLVHISQITDARVQNVADFLKIGDVVKVKVLEVDRQGRVRLSIKEANAPTEAAAPVADVAVAEEPAAE
>NZ_CP006579.1|WP_005326646.1|1071945_1072215_+|30S-ribosomal-protein-S15
MSLNAEIKASIVADNARCANDTGSPEVQVALLTAQINHLQGHFKEHSKDHHGRRGLLRMVSQRRKLLDYLKRKDVQRYAALIAKLGLRR
>NZ_CP006579.1|WP_025326067.1|1070825_1071785_+|tRNA-pseudouridine(55)-synthase-TruB
MSRRRRFKGRDVHGILLLDKPTGLTSNDVLQRVKRIYNAAKAGHTGALDPLATGMLPICLGEATKFSQYLLEADKRYEVTAKLGERTNTSDSDGEVVSTRPVNVAVGTLIEALDQFRGPIMQVPSMYSALKHNGRPLYEYAREGIEIEREARPITVFELKLLSFEGDEVRLEVHCSKGTYIRSLVDDLGEVLGCGAHVTQLRRTQVASYPYDRMLTLEQLECIFEQAKAESIPPREQLDPLLLPMDTAVASLPEVNMLTAVAAYVNQGQAVQVAGAPQSGQVRMTVGPEREFIGVGEIDDEGRVAPKRLVRYHDDNNEE
>NZ_CP006579.1|WP_025326076.1|1082046_1083447_-|TldD/PmbA-family-protein
MTSFSLLAPAIARDVLDHALALGADFAELFVERKRRSQLSLLSSQIENISGGLDFGIGVRLCYGHKVLYGYTNLASRDELLRIVSLLAAKDRRDPVVTATAFDFTPITDRNPVALPLSADKQLEQKIAYLHAMDAVARAESSKVSQFSGNVLGWEQEVEIFNSEGLQVADRRHYNRIMAQTIAVEGGEQSVGYEAPGALMGWEHADRIDPRELALTATRQALVKLGAAPCPSGTLPVIMESGFGGVIFHEACGHLLETTSVAKKASVFHDKMGQLIANPAVSAVDEGLQSNAWGSINVDDEGMATQHTQLIKDGVLTGFLVDRMGAIKTGHARTGSGRRESYKFAPTSRMRNTYIEPGSHSLDEMLATVEHGIYARKMGGGSVQPGTGEFNFNVQEAYLIEHGKITRPLKSATLIGTGPQVLKEISMVGRNLALAAGMCGSVSGSVPTSVGQPALKVDKILVGGNA
>NZ_CP006579.1|WP_025326077.1|1084049_1084568_-|flavodoxin-FldB
MKIGLFYGSTTCYTEMAAEKIRALIGPELVDLHNIKDVPLARMQEYDILILGISTWDFGELQEDWESRWEDIKDVPLEGRIIALFGMGDQLGYGEWYQDALGLLHDQLVPKGVRLVGYWPNEGYEFDASKALIDDGRHFVGLALDDANQYDQTESRIEQWVDQILNEIHELL
>NZ_CP006579.1|WP_025326078.1|1084764_1085676_+|site-specific-tyrosine-recombinase-XerD
MTKPAPAVHNHPLIEPFLDALWLERGLSDNTVSSYRTDLEKFALWLDGQGGSLLLAGMDDIQHYLAWRVDQQFAASSTARFLSALRRFYQYLNREKLRSDDPTVLLEGPKLPKKLPSDLSEGEVDALLTAPLVDDPLELRDKAMLELLYATGLRVSELVGLTAEHVSLRQGLVRVVGKGNKERLVPMGEEAVHWLERYYREARTLLLGGTSSDVVFPSKQARMMTRQTFWHRIKLYAQRAGIRGELSPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANERLKALHGEHHPRA
>NZ_CP006579.1|WP_025326079.1|1085778_1086189_-|large-conductance-mechanosensitive-channel-protein-MscL
MSLIKEFKAFAARGNVIDMAVGIIIGAAFGKIVSSFVGDVIMPPIGLILGGVDFSDLAVTLKAAEGDIPAVVIAYGKFIQTIIDFLIIAFAIFMGLKAVNTLQKKQAEEAPAPAGPTKDQELLTEIRDLLKSQQGK
>NZ_CP006579.1|WP_193353993.1|1086469_1087165_+|thioredoxin-fold-domain-containing-protein
MMLLCAFTANAGMDPQQLKQTMAQRLGVQVFLVDETPLPGIFLLGTAQGLIYSDARGDYVLQGSMLDLGHGMKNLTMLDQQRQRRLALAQIGEQRMQLKAPHERHRITLFTDLTCRSCRTSLDDLPILQAQGVSVQLLPALSTFADLVGAQATWCAPGLLGELSLSDRLPEAGCNEILAHHIGLSQWLGIKALPSWVLPNGDLVRGYQRPEQLLKLLDHIDAPANPSSFAS
>NZ_CP006579.1|WP_025326081.1|1087130_1088861_+|single-stranded-DNA-specific-exonuclease-RecJ
MPLQIRRRSRVDDSHLPATLHPLLRQIFASRGVEDPALLERSASQLLPPQRLFGMEQAVPLLADALMAQQRILIVGDFDCDGATSSALCVLALRAMGGHHVDFLVPNRFEFGYGLTPEIVELAVARGAEFLITVDNGISSIAGVAAAKAAGMRVLVTDHHLPGQELPDADAIVNPNQRGCDFPSKSLAGVGVAFYLMAALNTHLRQSGWYERQGIRAPNVADYLDLVALGTVADVVALDGNNRILVHQGLQRIRAGRCRPGIQALVDVSGRDGRRLCAADLGFALGPRLNAVGRLDDMSLGVACLLCDDINLARQLAAEMDSLNQERKEIEQGMQQEALATLEQIRFRDGEVPSGIVLHRDEWHQGVVGLVASKIKEKYYRPVIAFAESSETELKGSGRSIPGVHLRDALELLDTRHPGLMGKFGGHAMAAGLTLPKANIEAFGRAFETVIAELVTPELLTGVLLTDGELLPDELCLELAELIRASGPWGQAFPEPLFDGEFVLVQQRLVGEKHLKMMLTTDSGHAVDAIAFGVDLKRWPDASVKRVRLVYRLDVNEWRGNRSVQLLVEHLEAAGL
>NZ_CP006579.1|WP_025326082.1|1089269_1089563_+|hypothetical-protein
MQLHEPPAPGLADNLSLPPASQWRLSFEQGRRLEGAIDPDLYQMLLAWFQHEILGLLCGLLFFLPLIYLRQWPGCIGHLHQRQLLCHHLQYRFCHGD
>NZ_CP006579.1|WP_025326083.1|1089735_1090335_+|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MDYYVNLFIQSIFVENLALAFFLGMCTFLAVSKNINTAFGLGMTVLVVMVIAIPLNNLIYRHILRPDSTFLGEFDLGFLDFIIYIGVLAALVQVMEMVLDKHFPALHHALGIYLPLLTVHCAIFGGVMFMAQRDYDFIESVVYGAGSGLGWLLAIVAIAGLRQKMKYSDVPEGLRGIGITFIVAGLMSLGFMSFSGISL
>NZ_CP006579.1|WP_049828105.1|1090382_1090889_-|N-acetyltransferase
MPTPIVRLIPMDEAAFPAYRDYFIDDYAQDLASNHGLTLADARQQAEASLLQHLPQGAATPGQSLLCIIPVSDNVGSSVAPTAGIAGYLWHSIDSAAHTTFVYDFYTLPTHRGLGYGKAAMAVLEADLKCLGVGQIKLRVAYDNPRARALYEEIGFHITGYNMAKTLG
>NZ_CP006579.1|WP_025326085.1|1091053_1092019_-|lipoyl-synthase
MSKPVRMEPGVKLRDGDKMALIPVKFMPDPNEEVLRKPDWMRIKLPPSSQKIEHIKSTLRKNKLHSVCEEASCPNLAECFNHGTATFMIMGAICTRRCPFCDVAHGRPLALDPEEPKKLALTIKEMGLKYVVITSVDRDDLRDGGAQHFADCIKQIREHSPQTRIEILTPDFRGRMEQALEVFRETPPDVFNHNLETAPRMYRVARPGADYKWSLELLRRIKEMHPHVPTKSGVMMGLGETNEEIVQVLKDLREHGVNMLTLGQYLQPSRHHLPVKRYVPPAEFDELKDVAMGLGFSHAACGPFVRSSYHADLQAKGEEVK

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Crispr_ID: NZ_CP006579_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006579_10

1170310-1170394

Orphan

Consensus_repeat	Method
TTCATCCCACCTTTGCGGCGAGACTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006579_10

>merge|NZ_CP006579|10|1170310-1170394|CRISPRCasFinder
TTCATCCCACCTTTGCGGCGAGACTCGCGGTCCGCGTCTTCTTCTGGTGCGGGTTGTGTTCATCCCACCTTTGCGGTGAGACTCG

>NZ_CP006579|10|10|1170310-1170394|CRISPRCasFinder
TTCATCCCACCTTTGCGGCGAGACTCG	CGGTCCGCGTCTTCTTCTGGTGCGGGTTGTG
TTCATCCCACCTTTGCGGTGAGACTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006579.1\|WP_025326156.1\|1170489_1171161_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|181575
NZ_CP006579.1\|WP_025326152.1\|1163703_1165923_+\|type-IV-pilus-secretin-PilQ-family-protein	unknown	unknown	gnl\|CDD\|274173
NZ_CP006579.1\|WP_025326151.1\|1163159_1163687_+\|pilus-assembly-protein-PilP	unknown	unknown	gnl\|CDD\|377322
NZ_CP006579.1\|WP_025326159.1\|1172961_1173177_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025326154.1\|1167721_1169260_+\|SPOR-domain-containing-protein	unknown	unknown	gnl\|CDD\|225805
NZ_CP006579.1\|WP_025326161.1\|1174381_1175599_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|179933
NZ_CP006579.1\|WP_025326162.1\|1175674_1176694_+\|arginine-N-succinyltransferase	unknown	unknown	gnl\|CDD\|377426
NZ_CP006579.1\|WP_010673824.1\|1166114_1166633_+\|shikimate-kinase-AroK	unknown	unknown	gnl\|CDD\|235335
NZ_CP006579.1\|WP_025326153.1\|1166649_1167732_+\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|234565
NZ_CP006579.1\|WP_025326147.1\|1158154_1160644_-\|PBP1A-family-penicillin-binding-protein	unknown	unknown	gnl\|CDD\|183248
NZ_CP006579.1\|WP_025326165.1\|1179188_1179785_-\|beta-phosphoglucomutase-family-hydrolase	unknown	unknown	gnl\|CDD\|213673
NZ_CP006579.1\|WP_025326155.1\|1169330_1170203_+\|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase	unknown	unknown	gnl\|CDD\|182825
NZ_CP006579.1\|WP_025326158.1\|1171833_1172838_+\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|234866
NZ_CP006579.1\|WP_025326163.1\|1176759_1178229_+\|succinylglutamate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|181873
NZ_CP006579.1\|WP_025326157.1\|1171150_1171816_+\|phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|237310
NZ_CP006579.1\|WP_025326150.1\|1162557_1163157_+\|PilO-family-type-IV-pilus-biogenesis-protein-TapO	unknown	unknown	gnl\|CDD\|309474
NZ_CP006579.1\|WP_025326164.1\|1178298_1179096_+\|DUF1338-domain-containing-protein	unknown	unknown	gnl\|CDD\|319960
NZ_CP006579.1\|WP_080675088.1\|1160930_1162004_+\|PilM-family-type-IVa-pilus-assembly-protein-TapM	unknown	unknown	gnl\|CDD\|378558
NZ_CP006579.1\|WP_025326149.1\|1161991_1162561_+\|PilN-family-type-IV-pilus-biogenesis-protein-TapN	unknown	unknown	gnl\|CDD\|225707
NZ_CP006579.1\|WP_025326160.1\|1173521_1174103_+\|aminodeoxychorismate-synthase-component-II	unknown	unknown	gnl\|CDD\|235552

Protein	Function_ID	Function_description	E-value
NZ_CP006579.1\|WP_025326156.1\|1170489_1171161_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|181575	PRK08883, PRK08883, ribulose-phosphate 3-epimerase; Provisional.	3.00714e-139
NZ_CP006579.1\|WP_025326152.1\|1163703_1165923_+\|type-IV-pilus-secretin-PilQ-family-protein	gnl\|CDD\|274173	TIGR02515, Putative_DNA_transport_protein_HofQ, type IV pilus secretin (or competence protein) PilQ. A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures].	0
NZ_CP006579.1\|WP_025326151.1\|1163159_1163687_+\|pilus-assembly-protein-PilP	gnl\|CDD\|377322	pfam04351, PilP, Pilus assembly protein, PilP. The PilP family are periplasmic proteins involved in the biogenesis of type IV pili.	2.33047e-65
NZ_CP006579.1\|WP_025326160.1\|1173521_1174103_+\|aminodeoxychorismate-synthase-component-II	gnl\|CDD\|235552	PRK05670, PRK05670, anthranilate synthase component II; Provisional.	9.06091e-133
NZ_CP006579.1\|WP_025326154.1\|1167721_1169260_+\|SPOR-domain-containing-protein	gnl\|CDD\|225805	COG3266, DamX, Uncharacterized protein conserved in bacteria [Function unknown].	8.86523e-22
NZ_CP006579.1\|WP_025326161.1\|1174381_1175599_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|179933	PRK05093, argD, acetylornithine/succinyldiaminopimelate transaminase.	0
NZ_CP006579.1\|WP_025326162.1\|1175674_1176694_+\|arginine-N-succinyltransferase	gnl\|CDD\|377426	pfam04958, AstA, Arginine N-succinyltransferase beta subunit. Arginine N-succinyltransferase EC:2.3.1.109 catalyzes the transfer of succinyl-CoA to arginine to produce succinyl-arginine. This is the first step in arginine catabolism by the arginine succinyltransferase pathway.	0
NZ_CP006579.1\|WP_010673824.1\|1166114_1166633_+\|shikimate-kinase-AroK	gnl\|CDD\|235335	PRK05057, aroK, shikimate kinase AroK.	3.23198e-115
NZ_CP006579.1\|WP_025326153.1\|1166649_1167732_+\|3-dehydroquinate-synthase	gnl\|CDD\|234565	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed.	0
NZ_CP006579.1\|WP_025326147.1\|1158154_1160644_-\|PBP1A-family-penicillin-binding-protein	gnl\|CDD\|183248	PRK11636, mrcA, penicillin-binding protein 1a; Provisional.	0
NZ_CP006579.1\|WP_025326165.1\|1179188_1179785_-\|beta-phosphoglucomutase-family-hydrolase	gnl\|CDD\|213673	TIGR02009, Hypothetical_protein_Rv3400/MT3508/Mb3433., beta-phosphoglucomutase family hydrolase. This subfamily model groups together three clades: the characterized beta-phosphoglucomutases (including those from E.coli, B.subtilus and L.lactis, TIGR01990), a clade of putative bPGM's from mycobacteria and a clade including the uncharacterized E.coli and H.influenzae yqaB genes which may prove to be beta-mutases of a related 1-phosphosugar. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).	2.19834e-53
NZ_CP006579.1\|WP_025326155.1\|1169330_1170203_+\|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase	gnl\|CDD\|182825	PRK10904, PRK10904, adenine-specific DNA-methyltransferase.	1.56065e-151
NZ_CP006579.1\|WP_025326158.1\|1171833_1172838_+\|tryptophan--tRNA-ligase	gnl\|CDD\|234866	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.	0
NZ_CP006579.1\|WP_025326163.1\|1176759_1178229_+\|succinylglutamate-semialdehyde-dehydrogenase	gnl\|CDD\|181873	PRK09457, astD, succinylglutamic semialdehyde dehydrogenase; Reviewed.	0
NZ_CP006579.1\|WP_025326157.1\|1171150_1171816_+\|phosphoglycolate-phosphatase	gnl\|CDD\|237310	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP.	3.33222e-102
NZ_CP006579.1\|WP_025326150.1\|1162557_1163157_+\|PilO-family-type-IV-pilus-biogenesis-protein-TapO	gnl\|CDD\|309474	pfam04350, PilO, Pilus assembly protein, PilO. PilO proteins are involved in the assembly of pilin. However, the precise function of this family of proteins is not known.	3.79581e-59
NZ_CP006579.1\|WP_025326164.1\|1178298_1179096_+\|DUF1338-domain-containing-protein	gnl\|CDD\|319960	cd16350, VOC_like, uncharacterized subfamily of the vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	2.83169e-143
NZ_CP006579.1\|WP_080675088.1\|1160930_1162004_+\|PilM-family-type-IVa-pilus-assembly-protein-TapM	gnl\|CDD\|378558	pfam11104, PilM_2, Type IV pilus assembly protein PilM;. The type IV pilus assembly protein PilM is required for competency and pilus biogenesis. It binds to PilN and ATP.	3.84931e-115
NZ_CP006579.1\|WP_025326149.1\|1161991_1162561_+\|PilN-family-type-IV-pilus-biogenesis-protein-TapN	gnl\|CDD\|225707	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion].	1.89846e-27

>NZ_CP006579.1|WP_025326155.1|1169330_1170203_+|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase
MKKTRAFLKWAGGKYSLVEEIAERLPAGRVLLEPFVGAGSVFLNTDYDAYVLNDINPDLIGLYNHLKRQPDNFIREARKLFVAEHNHKTAYYRLRTQFNQTEAGFERAQLFLFLNRHGFNGLCRYNKKGGFNVPFGSYKKPYFPEKELWAFAEKAQKATFICESYADAMARAEEDWVIYCDPPYAPLSTTASFTTYSAGGFTLDDQALLARLARHTAAHKGVPVLISNHDIELTRELYRGARLDEILVKRTISRNGGSRNKVAELLALYPPGIAPEQGYYPGEAELVSVG
>NZ_CP006579.1|WP_025326154.1|1167721_1169260_+|SPOR-domain-containing-protein
MTNNKLLKLPSQRQLVDRLLHLIEFNHPFIFLSGKPGSGRGTLCESLLAQLPDSVRVVSLIGSPAMKMADVRQLLLQQVVARPLFNAQDALADSFFRMLEGKPSTLLLMIERADTLPAELVGELWALCRHNDTLASPHKLAILLSGSDVWCRDQKSALKGRAMPALELEVAPLSAPEQRIFLYEKAKELKIPAALLPKPKVEEILKGAGGHPSAIMQSLEDVMTDRRPKKRQAELPVKKIATVLALAAAGLLALSYLPLFEEAGKEQPQTSTQGMALPDPVATDPLSVGAASGAQGSQANSGADASSSSNQVARDWQPDAKTLPKKVESETVTTESSNYEGRRVVISDEVVEKLMTQPNVSGALPTAVVDELVGGSSRAAPTGAAAQAQSSAPVAKATPTPAATAPAAAPAPKVALTPVATLNKKARNHYSIQLMGASNTQAVDSFVAEHGLAGKVWVYKTRFRGSPWYVVVQGDYANSTQAKAAIRKLSPALLKGQPWPKSFAQIQKELKQ
>NZ_CP006579.1|WP_025326153.1|1166649_1167732_+|3-dehydroquinate-synthase
MERLKVELGERSYPIEIAAGLLQRPEVLAQTIKGKRVMIVTNTVVAPLYLEQIIQLLPGFQVEHLILPDGEAYKTLATFERIMSALLETSHGRDTTLIALGGGVIGDVVGFAAASYQRGIPFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMVGAFYQPKHVIIDTDCLKTLPAREFAAGMAEVIKYGIIWDAAFFSWLEVNMARLQRLDAEALSYAIRRCCEIKADVVGQDETEHGVRALLNLGHTFGHAIEAEKGYGNWLHGEAVAAGMMLAAETALVRGDMTAQEVARVRDLLLAANLPVLAPPEMDFAAFIRHMRRDKKVLEGKLRLVLPIGIGQAQVVADVTDAQLMAVIESGRDQ
>NZ_CP006579.1|WP_010673824.1|1166114_1166633_+|shikimate-kinase-AroK
MAEKRNIFLIGPMGAGKSTIGRHLAEQLHMEFFDSDHEIERRSGADIGWVFDVEGEEGFRIREEKVIGELAEQQGIVLATGGGAIKSRETRNKLSARGIVVYLETTIEKQLARTQRDKRRPLLQTEEPPREVLERLAQERNALYEEVADFVIQTDDQSAKVVANQIVKLIGM
>NZ_CP006579.1|WP_025326152.1|1163703_1165923_+|type-IV-pilus-secretin-PilQ-family-protein
MRTTIRRMRGVALLWLGVCTQVWAVPALQEVKVNPLLADQLLLELSFSEPVSGFTDRLSYEPNQLLLHVPGAIGALTVNPLPIKQQGVDNLKVEGKGEGLDIKIALDQLTPYQVHQQGNKLLVSLGEKAGQPVAATAVSPAASPSALVRSQPVTQSALIDTQRIAQNQSQYQPAAVSSPVAAPAPVAASKPVLSVSQANTGSAYFNSVKGVDFRRGKEGQGEFLVTLDNSSAAVDVSSRGQKVLAKFHGTRIPDDQLNLINVQDFATPVSQVEVFRQGNDTLFELSVNGQFDYRYDQADKMFIIQVKKRVATTTAKQYQGKPISLNFQDIPVRTVLQIIADFNNLNLVTTDSVSGNITLRLDGVPWEQALDIILKVRGLDKRLDNNILLVAPAEEIAAREKQQLESRNQVADLAPLYTEYLQINYAKASEVAALLSSESTKLLSPRGAVSVDERTNVLVVKDTADVISNVKRMLDILDIPVKQVVIEARMVTIDDGFDEALGVRWGVTKTDGHGNGTSGTIEGNDGAGNNDGSSTITRPGVDDRLNVNLPVTNAAGTLAFQVARLANGTLLDLELSALEKESKAEIIASPRVTTANQKPALIEQGTEIPYVESSSSGATSVTFKKAVLSLKVTPQITPDNRVILDLTVTQDTKGETVPTGTGDAVSINAQSITTQVLVNNGETLVLGGIYQQTIKSDVSKVPLLGDIPGLGYLFKKTTSENKKRELLIFVTPRIVTDAL
>NZ_CP006579.1|WP_025326151.1|1163159_1163687_+|pilus-assembly-protein-PilP
MRVIGLLLPVLLLTACGGQEDMDEYVQQTKARKPIPIEPLPEIKPFSPMAYQRSDQRSPFIEPQPETSSRVDAKTKPDCAQIVASREKEVLERYSLASLSMKGSIGKQGQLWALIRTPDGQAVRVGLNQYMGLDQGRVIKITNTHVDLMETVPDGKGCWVTRETQLAMANLDAKL
>NZ_CP006579.1|WP_025326150.1|1162557_1163157_+|PilO-family-type-IV-pilus-biogenesis-protein-TapO
MNLQQLNDLDLNDIARWPNVAKGIFILFCCALLGGAIYYYVIANSLTALRQEAAKEQELKAQFESKAMLAANLEAYRKQMVQLEHLVDTQLKQLPNTHEVAGLLDDISFIATDNGLKLNRINWEAEVQHEFSTELPMRIEVVGTYHELGKFTADMAALPRIVILESFQLNQGRGQDELIGMSMQAKTYKYNGKTLEQKP
>NZ_CP006579.1|WP_025326149.1|1161991_1162561_+|PilN-family-type-IV-pilus-biogenesis-protein-TapN
MSNINLLPWRLARAQRQKKQFGIMIGLFLAATASFAFAVDWLVQQQIGYQQQRNQRLQQEMATLDTQLGEIRLLKERRKELIDRMQLIEQLQTRRNIPVRLFNQLPVLVPNGVYLNTLALQANRIDVNGKAEAYGRVASMMRRIDGSGWLGQSQLSTIFTADVAPVALSQFSMMFQIAGVAPVATKGQQ
>NZ_CP006579.1|WP_080675088.1|1160930_1162004_+|PilM-family-type-IVa-pilus-assembly-protein-TapM
MDVYMFGLLSKGSLLSLAGIDFGSQTIKAVTLSGRPGKVHLESVAEIPMPKGTLVDYQLQDIERVSQSLKSLKRLIQGDCQQVATAVTGSNVITKVIQVDANINENELENQVHLEAEQLIPFPLDEVSLDFEILGLTADESRQEVLLSAARTESVSGRVSALTEAGMNTMVVDVGAHALGRAVLACLPELQTWDKPVGIVDIGASAMTFAALLRGEVVYSRLQNFGGDQYSQALASFYSMSLEEAELAKVQGSLPADHEVDVLLPHLSTLVLQVRRNVQLFCSSSGNKELSKLVLTGGGSLLPGLAGQLGSELNCEVLHPDPFALFGKPRGEGGLIHGAKYMAAFGLALRSFTPCQI
>NZ_CP006579.1|WP_025326147.1|1158154_1160644_-|PBP1A-family-penicillin-binding-protein
MLKWLVRLFIVMMLGAVLGVASLIGIYFYIKPQLPDVSALRDVKLATPMKVYSRDGELISQFGEIRRIPLRLDEIPQSMIDAVLATEDARFYEHPGIDPIGIIRAATVWAVSGQARQGASTITQQVARNFFLSNEKTLVRKIKEVFLAWRIEQNLSKDEILTLYLNKIPLGYRAFGVGAAAQVYFGKEVKDLTLDEIAIIAGLPKAPSMLNPIRSPERAFARRNVVLGRMLETGKITQAQFDEASKMPIKARYHGAETTLNAPYLSEMVRQKMVEQFGEDAYTMGLHVYTTVTAKRQRAAHQALLDGVFDYDTRHGYRGPTALLWKAGEAAWNYDQIMAHLAKQPTYQPLMAAVVTKVGDKSATLVLKNGKQAELGWNGIKWARTFITDDRQTYPPKSARDVLKVGAQIWVREKGEELLLSQIPDVNAALVAMNPQDGAIEALVGGFSFEISKFNRVDQARRQVGSNIKPFLYATALEQGYTLASLINDAPINQWDPAKGPMWQPKNSPAIYEGPTTLRLGLAKSKNVMSVRLMRAIGLDTYIDGLTRFGFAREHISANESLALGAAEFTPLEVVRGYSVLANGGFQVTPYFITEVTDSFGTPLYQANPAAACRDCGVLAAAGLDSADAYANTVPDWKAQCPIDPVVPNNMAPQTISAQSAFLITDTLTTAIWGGNGWRGTGWRAARDLKRHDISGKTGTTNESRDAWFSGYTPNLVATSWIGFDNHQRGLGRAEFGGGAAQPIWIDFMKTALQQVPERKMPVPEGIMQVRIDRETGLLTNRTDGASMEEFFKEGTEPTRYASQLSDGNEVYGGDGSSSDGPISTDDIF
>NZ_CP006579.1|WP_025326156.1|1170489_1171161_+|ribulose-phosphate-3-epimerase
MKDFLIAPSILSADFARLGEDVAKVLAAGADVVHFDVMDNHYVPNLTIGPMVCQALRDYGIEAPIDVHLMVKPVDRIVPDFAKAGANLITFHPEASDHVDRTLGLIKEQGCQAGLVLNPATPLTCLEYVMDKLDVILLMSVNPGFGGQSFIPGTLDKLRQVRRLIDESGRDIRLEIDGGVKVENIRDIAAAGADMFVAGSAIFGKPDYKAVIDEMRAELAHVR
>NZ_CP006579.1|WP_025326157.1|1171150_1171816_+|phosphoglycolate-phosphatase
MSVERPFDLVLFDLDGTLIDSASQLALAVNRTLTDLGLAEADEAVVRTWVGNGADKLIQRALDYREASEQFAKARPLFDQHYQACLLQGLAMYDGVEQSLRRLQALGYRQAVVTNKPSHFVQPILDALGIGDCFALWLGGNCVPVKKPSPDPLLHACHELGVSPSRTLMVGDSENDVLAAQAAGMKVVGLTYGYNYGRPIADSRPDWVCEQFAELDALLAE
>NZ_CP006579.1|WP_025326158.1|1171833_1172838_+|tryptophan--tRNA-ligase
MAKPIVLSGAQPSGQLTIGNYMGALRQWVNMQDDFDCLYCIVDLHAITTRQEPAALRKACLDAAALYLAVGIDPAKSTVFIQSHVPQHAELGWILNCYTQMGELSRMTQFKDKSARFENNVNVGLFGYPVLMAADILLYQANQVPVGNDQKQHLELTRDICTRFNNLYGEVFTLPEPFIPTDGARVMSLQDPTKKMSKSDDNEANFIGLLEDPKQIVKKIKRAMTDSDEPAVVRFDPENKPGVSNLLTLMSGVTGRSIPELEQHFEGKMYGHLKSETADAVVALLEPIQARFRELRQDETHLQAILAAGAQKARERAEKTLISVYDVVGFVPRA
>NZ_CP006579.1|WP_025326159.1|1172961_1173177_+|hypothetical-protein
MSVESNTMIEELSDKGHWLRKFRKAKNLNTLQLMVSNAIDKHHKTPAIAAAIYLAECQRERELEQGRYLDR
>NZ_CP006579.1|WP_025326160.1|1173521_1174103_+|aminodeoxychorismate-synthase-component-II
MLLLIDNYDSFTWNLVQYFGALGQEVVVKRNDELSLDEIARLAPSHLVISPGPCTPNEAGISLAAISRFAGEIPILGVCLGHQSLAQAFGARVVRARQVMHGKTSLIRHRGEGVFKGLKDPLRVTRYHSLIVERETLPDCFEVTAWSEHADGSMDEIMGLRHKTLALEGVQFHPESILSEQGHQLLANFLAVS
>NZ_CP006579.1|WP_025326161.1|1174381_1175599_+|aspartate-aminotransferase-family-protein
MSELLAVTREVFDEVMVPNYAPAKIIPVRGEGSRVWDQEGREYVDFAGGIAVNGLGHCHPKLVEALKTQGEKLWHLSNVMTNEPALRLAKKLVAATFAEKVYFCNSGAEANEAALKLARRYAIDKFGAHKTQIIAFHQGFHGRTFFTVSVGGQAAYSDGFGPKPADITHVTYNDLAELASVISDNTCAVVMEPLQGEGGIISPTDEFAKGVRELCDKHNALLIYDEVQSGVGRTGELFAYMGLGVTPDILTSAKALGGGFPIGAMLTTTEIASHLKVGTHGSTYGGNPLACAVAEAVLDVVNTPQVLSGIKQREQLFRDGLAAINAKYHCFSEVRGQGLLLGAVLNDDFKGRSRDFLLASIDQGLMALVAGTNVVRFAPSLVIPEADIKEGLARFEKAVAQVVNA
>NZ_CP006579.1|WP_025326162.1|1175674_1176694_+|arginine-N-succinyltransferase
MLVIRPIEQRDFAGLKTCAIESGTGMTSLPVNDELLQRKIDASTQTFLDKPAGKGDCLYFFVAEDLETGEMVGTCAIDAAVGLSQPFYNYHIGKVVHSSPKLGIYNVVETLTLSNDYTGNSELCTLFLRECAREGLNGRLLSKHRFLFMAEHPELFDKTVFAEMRGVSDENGHSPFYEWLQKHFFSMDFPTVDYLTGIGKKRFIAELMPKYPIYVNLLSNEARAVIGQTHEKTRPAIKMLQDEGFVNRGYVDIFDAGPTVECDVKHIRSVRRSQKLAVLVGEPIGGHTYLVCNARFEQYRACYGNIRVDLDKHEAIIPPKMAAALKVESGDMVRVVDLE
>NZ_CP006579.1|WP_025326163.1|1176759_1178229_+|succinylglutamate-semialdehyde-dehydrogenase
MMSLVQFIDGQWLAGEGKPFESKDPARNEVIWQGEAASAAQVDAAVKAARAAFYHWSDLALEDRLVIVRRYADLLGEHKEALALTIARETGKPLWETRTEVAAMQGKIAISIRAHDERTGTVENPMPGAKAFVRHKPHGVVAVFGPYNFPGHLPNGHIVPALIAGNAVVFKPSELTPMVAEAMLKIWQEAGLPKGVLNLVQGEVETGKALAGNPDIDGLFFTGSSRTGHFLHQQFAGQPGKILALEMGGNNPLIVKDVSDIDGAVHAIVQSAFITSGQRCTCSRRLFVERGAKGDALVKRLVEVVGQIRVGLYDAAEQPFMGAMISEKAALGMVEAQAKLQQLGGESLLALKHLEAGTGFVSPGIIDVTAVAALPDEEYFGPLLQLIRYDDFDAAIDQGNATSFGLSAGLLGDNEADWQHFFKRIRAGIVNWNKPITGASSAAPFGGIGASGNHRASAYYAADYCAYPVASVEDSKAAMPDQLSPGLTF
>NZ_CP006579.1|WP_025326164.1|1178298_1179096_+|DUF1338-domain-containing-protein
MQKDIETLFGHLWDNYIQVTPSAHKVHQLLGGGAPIINDHVAFRTYNLPKLGLEKLAAHFRALGYEEKGEYVFKAKKLYAKHFEHSDPDAPKVFISELKVEELSAGAQAIIHKLVDQVPDHLTDTPAFLYTGAPWQVSWSDYQTLLAESEYAAWMAAWGYRANHFTVNINRLSDFETIEEVNSALKAAGFVLNTVGGEVKGDPQVMLEQSSTMADKAEVAFSDGVRAIPSCFYEFARRYPQPDGVLYPGFVEASADKIFESTNAM
>NZ_CP006579.1|WP_025326165.1|1179188_1179785_-|beta-phosphoglucomutase-family-hydrolase
MSEQFQFEQYDALIFDMDGTLVDSMPLHLDAWEITSAEFGLPFDRAQLNEYGGIPTRKIVAMLAEQHGLEIDVEAFARRKVALYLAQIDRVSVFPAMWELVKRCHGKVPMGIGTGSTREHAAHILRQTGLDAFIPVLVSADDVSNHKPHPDTFLKVAEQLGANPANCLVFEDTPIGIEAGKAGGMATVLATEGELQRV

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Crispr_ID: NZ_CP006579_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006579_11

1326933-1327043

Orphan

Consensus_repeat	Method
GGCCAGCTCGGTGACGGCGGAGGCCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006579_11

>merge|NZ_CP006579|11|1326933-1327043|CRISPRCasFinder
GGCCAGCTCGGTGACGGCGGAGGCCACCTGCTCGGTCTCGCTGCGCTGCTGCTGGGCATTGGCCTCGGACTGGGTCATGACGGCGGCCAGCTCGGTGGCGGCGGAGGCCAC

>NZ_CP006579|11|11|1326933-1327043|CRISPRCasFinder
GGCCAGCTCGGTGACGGCGGAGGCCAC	CTGCTCGGTCTCGCTGCGCTGCTGCTGGGCATTGGCCTCGGACTGGGTCATGACGGC
GGCCAGCTCGGTGGCGGCGGAGGCCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006579.1\|WP_025326305.1\|1333905_1334256_-\|ArsC-family-reductase	unknown	unknown	gnl\|CDD\|239333
NZ_CP006579.1\|WP_025326302.1\|1329918_1331646_-\|potassium/proton-antiporter	unknown	unknown	gnl\|CDD\|235410
NZ_CP006579.1\|WP_025326290.1\|1318665_1319025_+\|RnfH-family-protein	unknown	unknown	gnl\|CDD\|377094
NZ_CP006579.1\|WP_080675092.1\|1331926_1332073_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025326292.1\|1320347_1321499_-\|L-threonine-dehydrogenase	unknown	unknown	gnl\|CDD\|341467
NZ_CP006579.1\|WP_025326308.1\|1336516_1337656_+\|M20-family-metallopeptidase	unknown	unknown	gnl\|CDD\|349881
NZ_CP006579.1\|WP_025326296.1\|1324670_1325141_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025326294.1\|1322801_1323497_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP006579.1\|WP_025326303.1\|1332069_1332759_-\|M15-family-metallopeptidase	unknown	unknown	gnl\|CDD\|350622
NZ_CP006579.1\|WP_005325779.1\|1319875_1320214_-\|outer-membrane-protein-assembly-factor-BamE	unknown	unknown	gnl\|CDD\|225465
NZ_CP006579.1\|WP_025326298.1\|1325542_1326073_-\|DUF1523-family-protein	unknown	unknown	gnl\|CDD\|369397
NZ_CP006579.1\|WP_025326295.1\|1323705_1324641_+\|pyrimidine-specific-ribonucleoside-hydrolase-RihA	unknown	unknown	gnl\|CDD\|182465
NZ_CP006579.1\|WP_025326297.1\|1325214_1325511_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|370745
NZ_CP006579.1\|WP_025326291.1\|1319112_1319748_-\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187560
NZ_CP006579.1\|WP_025326300.1\|1328019_1328652_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP006579.1\|WP_025326293.1\|1321891_1322647_+\|uridine-phosphorylase	unknown	unknown	gnl\|CDD\|183018
NZ_CP006579.1\|WP_025326301.1\|1328725_1329829_-\|beta-N-acetylglucosaminidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369423
NZ_CP006579.1\|WP_025326306.1\|1334456_1334771_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025326307.1\|1335055_1336432_+\|C4-dicarboxylate-transporter-DcuC	unknown	unknown	gnl\|CDD\|225611
NZ_CP006579.1\|WP_025326304.1\|1332755_1333883_-\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237265

Protein	Function_ID	Function_description	E-value
NZ_CP006579.1\|WP_025326305.1\|1333905_1334256_-\|ArsC-family-reductase	gnl\|CDD\|239333	cd03035, ArsC_Yffb, Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.	3.83458e-60
NZ_CP006579.1\|WP_025326302.1\|1329918_1331646_-\|potassium/proton-antiporter	gnl\|CDD\|235410	PRK05326, PRK05326, potassium/proton antiporter.	0
NZ_CP006579.1\|WP_025326290.1\|1318665_1319025_+\|RnfH-family-protein	gnl\|CDD\|377094	pfam03658, Ub-RnfH, RnfH family Ubiquitin. A member of the RnfH family of the ubiquitin superfamily. Members of this family strongly co-occur in two distinct gene neighborhood contexts. In one it is associated with a START domain protein, a membrane protein SmpA and the transfer mRNA binding protein SmpB. This association suggests a possible role in the SmpB-tmRNA-based tagging and degadation system of bacteria, which is interesting given that other members of the ubiquitin system are analogously involved in protein-tagging and degradation across eukaryotes and various prokaryotes. The second context in which the RnfH genes are present is in a membrane associated complex involved in transporting electrons for various reductive reactions such as nitrogen fixation.	1.1808e-43
NZ_CP006579.1\|WP_025326304.1\|1332755_1333883_-\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237265	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_CP006579.1\|WP_025326292.1\|1320347_1321499_-\|L-threonine-dehydrogenase	gnl\|CDD\|341467	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase. This family includes 1,3-propanediol (1,3-PD) dehydrogenase, a key enzyme in the microbial production of 1,3-PD that has been previously characterized as the product of dhaT gene in Klebsiella pneumoniae. 1,3-PD dehydrogenase is a member of the family III metal-dependent polyol dehydrogenases, which are shown to require a divalent metal ion for catalysis. However, some members of this family showed a dependence on Fe(2+) or Zn(2+) for activity.	0
NZ_CP006579.1\|WP_025326308.1\|1336516_1337656_+\|M20-family-metallopeptidase	gnl\|CDD\|349881	cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme. Peptidase M20 family, Glutamate carboxypeptidase (carboxypeptidase G; carboxypeptidase G1; carboxypeptidase G2; CPDG2; CPG2; Folate hydrolase G2; Pteroylmonoglutamic acid hydrolase G2; Glucarpidase; E.C. 3.4.17.11) subfamily. CPDG2 is a periplasmic enzyme that is synthesized with a signal peptide. It is a dimeric zinc-dependent exopeptidase, with two domains, a catalytic domain, which provides the ligands for the two zinc ions in the active site, and a dimerization domain. CPDG2 cleaves the C-terminal glutamate moiety from a wide range of N-acyl groups, including peptidyl, aminoacyl, benzoyl, benzyloxycarbonyl, folyl, and pteroyl groups to release benzoic acid, phenol, and aniline mustards. It is used clinically to treat methotrexate toxicity by hydrolyzing it to inactive and non-toxic metabolites. It is also proposed for use in antibody-directed enzyme prodrug therapy; for example, glutamate can be cleaved from glutamated benzoyl nitrogen mustards, producing nitrogen mustards with effective cytotoxicity against tumor cells.	3.68643e-165
NZ_CP006579.1\|WP_025326294.1\|1322801_1323497_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	2.74017e-68
NZ_CP006579.1\|WP_025326303.1\|1332069_1332759_-\|M15-family-metallopeptidase	gnl\|CDD\|350622	cd14847, DD-carboxypeptidase_like, Uncharacterized proteins of the MEROPS peptidase family M15, subfamily B. This family of uncharacterized proteins similar to D-Ala-D-Ala carboxypeptidase pdcA (Myxococcus-type) are zinc-binding enzymes that belong to the peptidase M15 subfamily B. The enzyme D-Ala-D-Ala carbozypeptidase catalyzes carboxypeptidation reactions involved in bacterial cell wall metabolism.	1.54576e-82
NZ_CP006579.1\|WP_005325779.1\|1319875_1320214_-\|outer-membrane-protein-assembly-factor-BamE	gnl\|CDD\|225465	COG2913, OlmA, Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane].	3.45052e-32
NZ_CP006579.1\|WP_025326298.1\|1325542_1326073_-\|DUF1523-family-protein	gnl\|CDD\|369397	pfam07509, DUF1523, Protein of unknown function (DUF1523).	5.92181e-71
NZ_CP006579.1\|WP_025326295.1\|1323705_1324641_+\|pyrimidine-specific-ribonucleoside-hydrolase-RihA	gnl\|CDD\|182465	PRK10443, rihA, ribonucleoside hydrolase 1; Provisional.	0
NZ_CP006579.1\|WP_025326297.1\|1325214_1325511_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|370745	pfam09904, HTH_43, Winged helix-turn helix. This family, found in various hypothetical prokaryotic proteins, is a probable winged helix DNA-binding domain.	1.35075e-53
NZ_CP006579.1\|WP_025326291.1\|1319112_1319748_-\|NAD(P)H-binding-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.99226e-64
NZ_CP006579.1\|WP_025326300.1\|1328019_1328652_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	2.47835e-32
NZ_CP006579.1\|WP_025326293.1\|1321891_1322647_+\|uridine-phosphorylase	gnl\|CDD\|183018	PRK11178, PRK11178, uridine phosphorylase; Provisional.	0
NZ_CP006579.1\|WP_025326301.1\|1328725_1329829_-\|beta-N-acetylglucosaminidase-domain-containing-protein	gnl\|CDD\|369423	pfam07555, NAGidase, beta-N-acetylglucosaminidase. This family has previously been described as a hyaluronidase. However, more recently it has been shown that this family has beta-N-acetylglucosaminidase activity.	1.00894e-58
NZ_CP006579.1\|WP_025326307.1\|1335055_1336432_+\|C4-dicarboxylate-transporter-DcuC	gnl\|CDD\|225611	COG3069, DcuC, C4-dicarboxylate transporter [Energy production and conversion].	1.24567e-115

>NZ_CP006579.1|WP_025326298.1|1325542_1326073_-|DUF1523-family-protein
MSLKFKKPAFITLGLVALLSALWLDFYLPEHTIATITGVEVKRTDKDGPISQKNPADGPTTDVYYIYTERPGEKIRVFRNEDTAWGWPFYFKFNAADVQAKAKSMEFEKRLAIITSYGWRINMFTMFPNVTKIESTDPDASTWSFFRWFWFGIWALVMGKAAIATWRYFDRLEDEI
>NZ_CP006579.1|WP_025326297.1|1325214_1325511_-|helix-turn-helix-domain-containing-protein
MTEPSKTRTSFYRRLYVAHLISQGTDTVPAIMAATGMPRRTAQDTLSALAELDISCAFEQTEGARHLQGHYRISDWGPINPAWIEAQLPAIKETLGYP
>NZ_CP006579.1|WP_025326296.1|1324670_1325141_+|hypothetical-protein
MWKGTLALLTCMQLTACATPFERMWQGLATCDLDDLYLDSESGEPSHPLLKTFTPDRTSDGFAWYKTHQELHGLPITGFLIPASTFEVHALFVDTPIANARRLTHNAYGSEFADEQKHDRGEAPLLLRDPGNPKRSIIDCTRGESAEPLPEEPFPE
>NZ_CP006579.1|WP_025326295.1|1323705_1324641_+|pyrimidine-specific-ribonucleoside-hydrolase-RihA
MALPVILDCDPGHDDAIALILALASPELKVLAVTTSAGNQTPDKTLNNALRILTQLGRHDIPVAAGAPKPLMRELIIADNVHGESGLDGTTLPDPAFAPQAMTGLELMAKCLRENPEPVTLVPTGPLTNIALLLAAHPELKAKIGRIVLMGGAAGAGNWTPAAEFNIYVDPEAADMVFNAGIPITMCGLDVTHEAQVMDEDIARVRAIPNPVAQCVADLLDFFMIYHRDPKWGFAGAPLHDPCTIAWLLAPTLFHGVECRVDIETGGTHTTGMTVVDRYGLTGRPANARVLLGLDRVGFIDLLVGRLRAFD
>NZ_CP006579.1|WP_025326294.1|1322801_1323497_-|RluA-family-pseudouridine-synthase
MSAIVDTFIAPPCNAQIEILFEDEHLLLINKPSGLLSLSGKNPQNLDSVHHRLVQDYPGCTLVHRLDFGTSGIMVVARDKGINGMLCQQFSQRAVSKAYEALLCGHLADDEGVIDAPIAKDPAIFPLMKICASGKPARSRYRVVKRLVHEGAGGEPLPLTRVSLVPETGRTHQLRIHSQLLGHPILGCDLYGGLLLPGCEQAPRLMLHASALDFVHPVSGEPMQIRCAAPF
>NZ_CP006579.1|WP_025326293.1|1321891_1322647_+|uridine-phosphorylase
MSDVFHLGLKKADLQGATLAIVPGDPERVKRIAELLDNPVHLASHREFTTWRGEMDGKAVIICSTGIGGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHLNVGDVIVTTGSVRLDGASLHFAPMEFPAVADFDCTTALVNTAKELGSTLHVGVTASSDTFYPGQERYDTVSGRVVSRFQGSMKEWQAMGVLNYEMESATLLTMCSSQGLRAGMVAGVIVNRTQQEIPNAETMARTESDAIKIVLGAARKLI
>NZ_CP006579.1|WP_025326292.1|1320347_1321499_-|L-threonine-dehydrogenase
MATFKFYIPAVNLMGAGCLQEAAADIQGHGFRKALIVTDKILGQIGVVARLTALLAEYDIESVVFDETKPNPTMTNVESGLAMIKAHGCDCVISLGGGSPHDCAKGIALVATNGGSIQDYEGVDCSARPQLPLIAINTTAGTASEMTRFCIITDEARQVKMAIIDKHVTPLMSVNDPELMLAKPAGLTAATGMDALTHAIEAYVSTAATPVTDASAVMAIQLIAKHLRTAVNQGDDLHAREQMAYAQFLAGMAFNNASLGYVHAMAHQLGGFYDLPHGVCNAVLLPHVQAYNARVSAGRLKDVARHMGVDVSAMSDVQGAEAAIAAIRQLALDVKIPAGLEQLGVKTDDFDLLASNALKDACGFTNPKQASHEEIVAIFRTAM
>NZ_CP006579.1|WP_005325779.1|1319875_1320214_-|outer-membrane-protein-assembly-factor-BamE
MRMKHLIAAALTALTLSGCSLVYRIDIPQGNYVEQKQVDKLRQGMTREQVEFVLGSPMLRDGFDPNTWYYLYEFQPGRGDKERKELTLNFVGDRLATATGDFPLPAAFTTPL
>NZ_CP006579.1|WP_025326291.1|1319112_1319748_-|NAD(P)H-binding-protein
MSQILIAGATGLVGQALIRQLGPEHQLTLLCRQPGEATPNRHWLPVNFERLDEVALPGPVDMAFCCLGTTRKEAGSDRAFRRVDHDYVLAFAAFARRHGCRRLLVVSSLEANPASPALYPRTKGEMEQALLAQEWQRLVILRPAMLLGHRQPPRRSEQIVQAIYPWIKPLLQGPLRRWRAIEASQVAHAMTVLAKQESGIETVQNERLLTL
>NZ_CP006579.1|WP_025326290.1|1318665_1319025_+|RnfH-family-protein
MSDLLNIEVAYALPERQTVLCLRVAPGTSVLAAIEQSGIVQKHPEIDLSVNKFGIYSRPVKGSEPVQDGDRIEIYRPLIADPKEMRKKRAEKAKEEGRADVVTGGRPDVHRKRDDGEST
>NZ_CP006579.1|WP_025326300.1|1328019_1328652_+|LysE-family-translocator
MSDWIDPAILALFIPTFFFVSVTPGMCMTLAMTLGMSLGVRRTLHMMWGELIGVGLVSVLSVVGVAAVMLNYPALFSAFKYVGGAYLVWLGIQMWQAKGKMAIPADLSAGQETRPLGLALQGFVTAIANPKGWAFMVSLLPPFINAAKPMAPQISALVVLILVIEFSCLLLYASGGRTLRHFLARSGNVTLMNRIAGSLMLFVGVWLAFG
>NZ_CP006579.1|WP_025326301.1|1328725_1329829_-|beta-N-acetylglucosaminidase-domain-containing-protein
MPYQTLLSGLYPPSPRLGLIEGFFGKGWSWEARARYAQWLPRHGYGFYLYAPKEDGYLRKHWAEPWPREQLDHLRQLAQQCRDNGLAFGVGLSPMGAHHDYAHKRPALLEKVRLIEEALKPDILAVLFDDMKGDTPDLAHWQLTIAHDIAAHTGASRLIFCPSYYSTDPVLEKVFGAMPPHYLTDLGQGLDKRFDIFWTGPKVCSTDYPAAHLKQAADWLHRKPFLWDNYPVNDGSKASSFLHLRAFENRPAELAELTAGHAVNPMKQAALSVLPLATLPMSYRLGHQYDPDQALHTSLNATCGPQISAMIEADLPLFQDIGLAQLTPEQLIHLKHRYLPFQDQACVAEILRWLDGEYVFDPDCLTD
>NZ_CP006579.1|WP_025326302.1|1329918_1331646_-|potassium/proton-antiporter
MDATTINSFFFIGALLVGASVLLSALSSRVGIPILVIFLAVGMLAGEDGPGGIHFADYSVAYLVGNLALAIILLDGGMRTRVSSFRVALWPALSLATVGVAITTGLTGLAAAWLFDLNLMQGMLIGAIVGSTDAAAVFSLLGGRSLNERVSATLEIESGSNDPMAVFLTVTLIEVLASAQQGLDAGFLLLQLIKQFGLGAGIGLAGGWLLWRLINTARLAPGLYPLLTVSGGLLIFALTTAVGGSGILAIYLTGLLLGNLSLRSRSTTLSVLDGLTWLSQIGMFLVLGLLATPSNLLPIAVPALALAMWMILFARPVSVWIGLLPFKNFAPRERWFISWVGLRGAVPIILAVFPMMAGLPNAQLYFNVAFFVVLVSLILQGSSLPLASRLARVEVPAPPSPINRSGLEIDLDSQWETFIYRLSAEKWCIGSPLRELRMPQGTRICALFRGQELLHPSGSTCLQSDDILCVIGHERDLPALGQLFSQAPEQDLGPRFFGDFLLEATARLVDLAPLYGLDVSEVADQTLGDFIAHQLGDNLVVGDHVAWQGLLWTVAEMEESEPRKIGVRFLEEDPV
>NZ_CP006579.1|WP_080675092.1|1331926_1332073_-|hypothetical-protein
MSVWLWIGLPLLFLLGLFLNAIKDMKQLEKQLPKYKDKIREVKDDEDD
>NZ_CP006579.1|WP_025326303.1|1332069_1332759_-|M15-family-metallopeptidase
MTQDQLLGLDESHLILVGRGPHRLTPATAAAFNDMQVAAAYEGFNLQAASSWRSFERQLAIWNGKWRGERPLLDADNRPLDALQLGETERLHAILRWSALPGTSRHHWGTDLDIYDPDCLPAGTRLALEPWEYEAGGWFADLGEWLGDHMSDFGFFLPYAKPLDAAQGVAYEPWHISFALESAEQRLDPDALALCLQQADIEGKACILSHLDEILARYVTAGHTERRIR
>NZ_CP006579.1|WP_025326304.1|1332755_1333883_-|succinyl-diaminopimelate-desuccinylase
MSDVIALAKDLIRRPSVTPLDEGCQTLMAERLARLGFVIEPMVFEDTTNLWARRGSEGPLFCFAGHTDVVPAGPLDKWQTPPFEPTIQDGMLYGRGAADMKGSLAAMVVATERFVAEHPDHQGSIAFLITSDEEGPFINGTVRVIDTLEARNEKIRWCIVGEPSSTAVVGDVVKNGRRGSITGDLLVRGVQGHVAYPHLADNPIHKAAPALAELAATVWDEGNAYFPPTSFQIANIQAGTGASNVIPGELQVQFNFRFSTELTDLDIRERVEALLTRHGLDFELKWTLSGQPFLTDTGALLEATVAAVAAVNGQQPALLTTGGTSDGRFIAPTGAEVIELGPVNATIHKVNECVKADDLDLLAEMYQGVLEHLLA
>NZ_CP006579.1|WP_025326305.1|1333905_1334256_-|ArsC-family-reductase
MATTLYGIKNCDTIKKARKWLDEAGIDYRFHDHRADGLEPARLDGWLNQLGWEALLNTRGTSFRALPEEAKQGLDTAKARALLLEHPAMIKRPLLDKDGELTLGFKADHYQSLFSR
>NZ_CP006579.1|WP_025326306.1|1334456_1334771_-|hypothetical-protein
MTSQATAGVSTCDYKLWDILVESAKERTTIRYSKLARLAGLEQCQDELRTLLQRIRMYCTENNLPILSAIVVDDVGKYTGLSSSLPDAPWERARVFDHQWTTLH
>NZ_CP006579.1|WP_025326307.1|1335055_1336432_+|C4-dicarboxylate-transporter-DcuC
MELLFVLLVLMAVVYGIVKDYNPQAVLALAGMAIFAVAYWLGLHPILPADKSTGFALFDLFEVFKGIFSYRAAGLGLTIMAVAGFATYMSHIGASQSLVRVAVKPVAGIQSSYLMLAICYLVAVFVSLFVTSATGLGLLLMVTMYPVMRNLGISPASACGVIATSQAFEIGPTQTNAIFSAGQSGMDPTSYFVDYQIWLVAPMLLVTMVLHFFWQRHCDRQDGWDPALHRGDPAELDEQGTESVQAPTWYALLPIIPFVLMMTFSKLLVTSISVSVEVAMLLSVFIGMLCELLRSRSVRTAFAGLSSFLDGMGKVFGPVVALIVCAELFAESLKAIGAIDTLLHSASNAGIGSGLMTLVMVALIMVAAVIMGSGNAAFLSFSTLAPAVAAKFGVPAVTMLLPMQLASSIGRTVSPIAAVLIACAGIAKVSPFVVVKRTCVPMAGALVTALALNYLLFM
>NZ_CP006579.1|WP_025326308.1|1336516_1337656_+|M20-family-metallopeptidase
MTDSRNAFSLDAYLADLAPLINLDCGTRTPAGVARVADIMTEKYEAIGWQVTRHQFAAECGPCLEITNAPGADHYDVMLVGHMDTVFPEGTAAKRPLKIEGNQAFGPGVSDMKSGLLSTWYALQGMDPAVLARLKVLVCCNCDEEIGSPWSKDWLVEKAKLSGCVLVAEAARPSGDLISARKGNAKYRIRFHGKASHAGSALAEGVSAITELAHWVLAINEQVNMETGTTMNVGVVQGGTGVNVVPDFAEAIVDLRFWSNEEAAAVHDRLGFMANNPFLAGCRVEVERQSFKPAMRPSGDTEALMALVEAAAAEEGISFNWLEAGGGSDANFTAAAGVPSLDGFGPMGGGFHSEAEFLLLGSIEPRIRLLQRVLGKLAK

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Crispr_ID: NZ_CP006579_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006579_12

1545860-1545950

Orphan

Consensus_repeat	Method
CCGCTGGCAATAGAAAAAACATGAAGCCATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006579_12

>merge|NZ_CP006579|12|1545860-1545950|CRISPRCasFinder
CCGCTGGCAATAGAAAAAACATGAAGCCATTCGTGGCGATTTATACTGCCGCCTCATCAACCGCTGGCAATAGAAAAACATGAAGCCATTT

>NZ_CP006579|12|12|1545860-1545950|CRISPRCasFinder
CCGCTGGCAATAGAAAAAACATGAAGCCATT	CGTGGCGATTTATACTGCCGCCTCATCAA
CCGCTGGCAATAGAAAAACATGAAGCCATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006579.1\|WP_025326489.1\|1553766_1554387_-\|DUF479-domain-containing-protein	unknown	unknown	gnl\|CDD\|225666
NZ_CP006579.1\|WP_025326479.1\|1544952_1545762_-\|polyphosphate-kinase-2	unknown	unknown	gnl\|CDD\|213852
NZ_CP006579.1\|WP_025326482.1\|1547897_1548968_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_CP006579.1\|WP_025326475.1\|1539831_1541013_+\|maltose/maltodextrin-ABC-transporter-substrate-binding-protein-MalE	unknown	unknown	gnl\|CDD\|236533
NZ_CP006579.1\|WP_025326484.1\|1549402_1550836_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|227122
NZ_CP006579.1\|WP_025326478.1\|1543709_1544846_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|182893
NZ_CP006579.1\|WP_025326472.1\|1533782_1535933_-\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273808
NZ_CP006579.1\|WP_025326483.1\|1549029_1549260_-\|sulfurtransferase-TusA-family-protein	unknown	unknown	gnl\|CDD\|376492
NZ_CP006579.1\|WP_025326477.1\|1542749_1543640_+\|maltose-ABC-transporter-permease-MalG	unknown	unknown	gnl\|CDD\|182891
NZ_CP006579.1\|WP_025326474.1\|1538385_1539435_+\|nucleoid-associated-protein-YejK	unknown	unknown	gnl\|CDD\|178993
NZ_CP006579.1\|WP_025326471.1\|1531743_1533783_-\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224684
NZ_CP006579.1\|WP_025326480.1\|1546002_1546803_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|131480
NZ_CP006579.1\|WP_025326481.1\|1546900_1547710_-\|MipA/OmpV-family-protein	unknown	unknown	gnl\|CDD\|377682
NZ_CP006579.1\|WP_011705556.1\|1538084_1538312_-\|DUF1414-domain-containing-protein	unknown	unknown	gnl\|CDD\|237471
NZ_CP006579.1\|WP_025326486.1\|1551444_1551795_+\|arsenate-reductase-(glutaredoxin)	unknown	unknown	gnl\|CDD\|239332
NZ_CP006579.1\|WP_025326487.1\|1551791_1552172_+\|DUF2069-domain-containing-protein	unknown	unknown	gnl\|CDD\|378269
NZ_CP006579.1\|WP_025326473.1\|1536193_1538041_-\|DUF3413-domain-containing-protein	unknown	unknown	gnl\|CDD\|225625
NZ_CP006579.1\|WP_025326488.1\|1552248_1553583_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238624
NZ_CP006579.1\|WP_025326476.1\|1541084_1542737_+\|maltose-ABC-transporter-permease-MalF	unknown	unknown	gnl\|CDD\|236816
NZ_CP006579.1\|WP_025326485.1\|1550891_1551386_-\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264

Protein	Function_ID	Function_description	E-value
NZ_CP006579.1\|WP_025326489.1\|1553766_1554387_-\|DUF479-domain-containing-protein	gnl\|CDD\|225666	COG3124, COG3124, Uncharacterized protein conserved in bacteria [Function unknown].	1.56839e-49
NZ_CP006579.1\|WP_025326479.1\|1544952_1545762_-\|polyphosphate-kinase-2	gnl\|CDD\|213852	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1). [Central intermediary metabolism, Phosphorus compounds].	1.86619e-157
NZ_CP006579.1\|WP_025326482.1\|1547897_1548968_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	2.65864e-60
NZ_CP006579.1\|WP_025326475.1\|1539831_1541013_+\|maltose/maltodextrin-ABC-transporter-substrate-binding-protein-MalE	gnl\|CDD\|236533	PRK09474, malE, maltose/maltodextrin ABC transporter substrate-binding protein MalE.	0
NZ_CP006579.1\|WP_025326484.1\|1549402_1550836_+\|M48-family-metallopeptidase	gnl\|CDD\|227122	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only].	4.27559e-140
NZ_CP006579.1\|WP_025326478.1\|1543709_1544846_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|182893	PRK11000, PRK11000, maltose/maltodextrin ABC transporter ATP-binding protein MalK.	0
NZ_CP006579.1\|WP_025326472.1\|1533782_1535933_-\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	3.82491e-95
NZ_CP006579.1\|WP_025326483.1\|1549029_1549260_-\|sulfurtransferase-TusA-family-protein	gnl\|CDD\|376492	pfam01206, TusA, Sulfurtransferase TusA. This family includes the TusA sulfurtransferases.	2.1818e-15
NZ_CP006579.1\|WP_025326477.1\|1542749_1543640_+\|maltose-ABC-transporter-permease-MalG	gnl\|CDD\|182891	PRK10998, malG, maltose ABC transporter permease MalG.	0
NZ_CP006579.1\|WP_025326474.1\|1538385_1539435_+\|nucleoid-associated-protein-YejK	gnl\|CDD\|178993	PRK00378, PRK00378, nucleoid-associated protein NdpA; Validated.	1.81528e-158
NZ_CP006579.1\|WP_025326471.1\|1531743_1533783_-\|S9-family-peptidase	gnl\|CDD\|224684	COG1770, PtrB, Protease II [Amino acid transport and metabolism].	2.0576e-176
NZ_CP006579.1\|WP_025326480.1\|1546002_1546803_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	9.13404e-40
NZ_CP006579.1\|WP_025326481.1\|1546900_1547710_-\|MipA/OmpV-family-protein	gnl\|CDD\|377682	pfam06629, MipA, MltA-interacting protein MipA. This family consists of several bacterial MltA-interacting protein (MipA) like sequences. As well as interacting with the membrane-bound lytic transglycosylase MltA, MipA is known to bind to PBP1B, a bifunctional murein transglycosylase/transpeptidase. MipA is considered to be a structural protein mediating the assembly of MltA to PBP1B into a complex.	2.70628e-37
NZ_CP006579.1\|WP_011705556.1\|1538084_1538312_-\|DUF1414-domain-containing-protein	gnl\|CDD\|237471	PRK13689, PRK13689, hypothetical protein; Provisional.	7.00807e-29
NZ_CP006579.1\|WP_025326486.1\|1551444_1551795_+\|arsenate-reductase-(glutaredoxin)	gnl\|CDD\|239332	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.	1.40312e-50
NZ_CP006579.1\|WP_025326487.1\|1551791_1552172_+\|DUF2069-domain-containing-protein	gnl\|CDD\|378269	pfam09842, DUF2069, Predicted membrane protein (DUF2069). This domain, found in various prokaryotes, has no known function.	3.43879e-38
NZ_CP006579.1\|WP_025326473.1\|1536193_1538041_-\|DUF3413-domain-containing-protein	gnl\|CDD\|225625	COG3083, COG3083, Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only].	0
NZ_CP006579.1\|WP_025326488.1\|1552248_1553583_-\|amidohydrolase-family-protein	gnl\|CDD\|238624	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	5.04439e-114
NZ_CP006579.1\|WP_025326476.1\|1541084_1542737_+\|maltose-ABC-transporter-permease-MalF	gnl\|CDD\|236816	PRK10999, malF, maltose ABC transporter permease MalF.	0
NZ_CP006579.1\|WP_025326485.1\|1550891_1551386_-\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.20842e-29

>NZ_CP006579.1|WP_025326479.1|1544952_1545762_-|polyphosphate-kinase-2
MPKEKSKKRPRLGKKTYEHHLTQLQEELVKLQEWVKQEGLKVVVLFEGRDAAGKGGVIKAITEPLNPRVCRVTALPAPSDRERTQWYFQRYAAHLPSAGEMVLFDRSWYNRAGVERVMGFCTDTEYREFLRACPEFERMLTRSGITLIKYWFSVSDEEQEKRFKERINTPIKRWKFSPMDLQSRSRWVEYSRAKDDMFIYTDTEDCPWFVVDADDKRRARLNCIAHLLGKVPYEAIHYEPIKLPPIKTEGYERPPLASQTFVPDITAEL
>NZ_CP006579.1|WP_025326478.1|1543709_1544846_+|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MAEVVLNNVRKNYDPAVHKDTLRNINLAIKEGEFIVFVGPSGCGKSTLLRMIAGLEDITSGELTIGGRYMNDVPPVERNVGMVFQSYALYPHMNIYENMAFGLKLKKMDKENIHKRVMRAAEILGLEPLLDRKPKALSGGQRQRVAIGRSIVQQPQVFLFDEPLSNLDAALRVKMRIEIAKLHKELNSTIIYVTHDQVEAMTLANRIVVLSPLKGEATTNLEQFGTPLELYHNPDNKFVAGFIGSPKMNFLAGELLEIGEQECVVKLTSGDTVRARVDARSGAVGDKVELGIRPEHLVPLDHAHADSKVSGVVQVAEHLGAESFVYMDVDGHDFTVKASSDVDVATGEQYSVGIPAEACYLFDAKEQAFPRTARYIRT
>NZ_CP006579.1|WP_025326477.1|1542749_1543640_+|maltose-ABC-transporter-permease-MalG
MAIVQPKSVKYRVWATHLVMWGFLALIIFPVIMVIAISFRNGNFSVGEIIPSNPTLDHWKLALGMSITNADGSITPPPFPVLTWLWNSIKIAGITALMIVVLSTTCAYAFARLRFRGKQTILQGMLIFQMFPAVLALVAIYALFNKIGDYIPWLGLNTHGGLILAYMGGIALHVWTIKGYFETIDSSLEEAAAIDGATPWQAFRLILLPLSVPILAVVFILAFIGSITEVPVASILLQDVNNLTLAVGAQQYLYPQNYLWGDFAAAAVLSGLPITVVFLMAQRWLVGGLTAGGVKG
>NZ_CP006579.1|WP_025326476.1|1541084_1542737_+|maltose-ABC-transporter-permease-MalF
MEVVPSIESYAGPKKDKYVWLKWTMAALIAVLNGYAAVMMYASGEWVFALLDLVVVSVGLYVFMNKKTYAHRYIFPGVAGMVVFIIFPLAYTIGIAFTNYSGSNLLSLEQARDFHLKKIYKVTGGEFDFTLLGGENNQFQLLLQQDDQSFISQPLTLLNNKARTLAVREGRVSDEPQVVQLQPLNGEALDKAAPIRAIVDHRTHLSALDLVLPDGTIHLTLSSLRKFAAQKPLYTQLVDGAVLKSGVVIKDGNLLRDNQNGELMLPNGDTGFYQYIDADGHFVGKGMAPGFVVSVGWKNFVRIMTDPGIQGPFMQIFVWTVIFSACSVAFTLAIGMVMACLVQWEQLRARGFYRVMLILPYAIPAFISILVFKGLFNQNFGEINLFLEAAFGIKPDWYTTPFLAKVMILIVNTWLGYPYMMILCMGLLKAIPEDLYEASAMDGAGPVQNFFKITVPLLMKPLTPLLIASFAFNFNNFVLIQLLTNGAPDIIGASTPAGTTDLLVNYTYRIAFQGSGGQDYGLASAIATAIFLIVGALALLNLKLSKADKL
>NZ_CP006579.1|WP_025326475.1|1539831_1541013_+|maltose/maltodextrin-ABC-transporter-substrate-binding-protein-MalE
MKKKLLSSLIGLATLGVACSATAAIDEGQLTIWINGDKGYNGLAEVGKKFEAETGIKVTVAHPDQVEVKFQQAAATGNGPDIFFWAHDRYGEWVKAGLLVPVTPNAATKAKFEQFAWDAMTVDGKTYGYPVAVEAVSLIYNKDLLPNPPKTFEEIAKIDEDLKKNGKRAIMWAYDTPYFSYPLVAANGGYAFKKTATGYDVKDTGVANAGAKAGVGYISEMIKSGHLEKGIDYGVMDAKFNKGEVAMMINGPWAWSNLDKSGIKYGVAPLPTLKGNPAKAFVGVLGATINAASPNKDLAIEFLENYLLTDAGLAPVNADKPLGAVALKSFQKTLETDPNIKATMQNAQNGEPMPSVPEMSRFWSSFETALKNVTSGRQSVDEALDTAAKRIVQ
>NZ_CP006579.1|WP_025326474.1|1538385_1539435_+|nucleoid-associated-protein-YejK
MSLDIDKIILHSLRAGNDGQPHADTRSQTLPADEAVQGLMAELHRIYNGKGGKGFGFFADPEAAVAELAEGEEAPKQPSPAFRIALEQLLGEQTEFVPFSITLTQMLVKQLVEHALDEQGVLLIAKYNYVGVDYLMIALLEGKESVTVSEALDLRHIHYLDIGKLNLVARIDLTEWKTQADSRRYITFSKGRVGRKLGDFFMDLLGAREGMDAKVQNKGLLQAVDDYCDSRQLEPAQRNDYKKQVFKYCTEQASAGEEIEIKELSAELPGDGDLDFYSFIGQEYELEDRFPADRSTLRGLTKFVGSGGGLTLSFEQKLLNSRVFYDPQTDTLTIRGVPPNLKDQLLRQS
>NZ_CP006579.1|WP_011705556.1|1538084_1538312_-|DUF1414-domain-containing-protein
MPIVSKYNNEQFDALMNDLITALEKHKAPVDLSLMVLGNLTTNIINGMAPAQRQAITEKYIQALTASVDHRHDAH
>NZ_CP006579.1|WP_025326473.1|1536193_1538041_-|DUF3413-domain-containing-protein
MVETGNPYRDNVSRLITWGHWFSFFNIILAMLIATRYLGSISWPSTTLGITYLIISWIGHFSFLSFVTYLLTVFPLSFVLPREKPLRFISAIIATLAQVLLLIDTQVFQLFKFHLNGQVWQLLLDQAQTEEGSIWSIIFVAVPTIFLLQLLLSAYVWRKINKRKRRQYGNQVGLALLVCFMLTHLVNSWADATLYQPITMQRANFPLSYPMTARSFLAKHGWLDLEQYEKKAENQGSAEHRLLYPLRPLSVSAPSEHKNLLVVVVDSLRADMLNNINMPNLQRYADQHLNYRRHMSGGNDDAMGMFGLFYGLPGHYYGDIRADKRPPVLFDEMLRQDYQFGLFGALEDAKQYQQSLLAGLRKQVFVSRQSDDTRLIGDWQQWLGTRTADRPWFSLVYLSSPGDYQVPASLKGPFQPELTRFNPATAYRPENLQKLENRYKNSVFYTDQLLEQMLSRLQQQGLSEQTIVVITSNHGQEFNETQSNSWGYGSNYSPYQVQVPLVLAWPGVESQPQEQASSHLDLVPTLMKGMLGVRNPPRDYSTGRSLFDTSPRTWLLAGDQNDFAIYQDNTITQFNKQGDFELLDRNTYRPIKHGTPDMGAMIQVMNELNRFYRTP
>NZ_CP006579.1|WP_025326472.1|1533782_1535933_-|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MKTLLHYWPMLLSGTALAASDPAGTDPEPRAHETIVVKGQRIEQKLSDVSGSITVITEEELDRQVATELTDVFKNEPGVSVTGSAGRPQNIIIRGMGGNRVLIIKDGVRVSDGFGADDLNDKVGRFSFDLDDVKQIEVAKGAGSSLHGSDAIGGTIVISTKQPEDYLQGQDAYLGSKVLQDGSSDKQKLSATGAARVLDSEHLLRVSGWQGHETANYDESRIPADLDGLSASTSSRFPLSDHHLLRLELDYFEDNAKRDQGPREVPQPDGKWQVRQYNEQGSQRTQGGKLGWEASDLGSLLADQFTWSLYGNHSKNSANKRSLLQNDLLSGYPRYRSERELATFTEERIGSELDLRRDLVTGDLAHKLSYGVELERTRHERPVEKLSLEAGVPQPSQSEPFSSARTDRAGVWLGDVATLGRWQFTPTLRMDHQWLRPQDGNQGENHSWHLSPSLATSYRVNEQWRSWLSYANGFRAPSYDKVYGNIPHYFALPPFQIIANTDLKEETSHSFEWGLSGEGENWSIKPALFYNRYYNFIDWREVGLRLSDGVILRQYRNVAKAETWGAEIAASYWLTQEWELATKLGWVDGEDSQGEALRTLTPLEGNTRLSYQTSDWSLGVQADYAAAMDRVPSCGNSLTKRQDACLTSAGWFSLAMTADWLITDAFKVNFKLDNLFDTRYIRYQDVAGLEAGTDAGLFTQSGRTFSASLRYTFVGI
>NZ_CP006579.1|WP_025326471.1|1531743_1533783_-|S9-family-peptidase
MHSLLLLASLLATPAPAAPLPEATQEAAPLIPERPLLMKGEIARLDPYGGWRDDSRRAPELLTLLREQNRWTEQQLAGQQPLAKTLQAEWQARERGEPLPKEWLTEAGSQWRMAADGSLWQRSDARSAPRQRLAPRQPDQGYYEIAAWALHPDGRLLALAEDHRGDRDYRITLLDLVSGETLASLPHRASDLLWSLDGKTLYTVANERHTLRPWQLWAWRDGKETLVHQEADAAWLLSLYRTTDKRHLILQSNNHDSSEQYLLDKGGPTLLKPRKRGLEYYLDTQGDRVLVKSNRDRAMGLYQAPSLAQVAAGPWQPLWSGEGRELEKWRLFAHHTVLQYRKAGDDWLDVLDAGGRLTHSLALTEGAGTAWIQGSQDPAGARVLIRRQGMAEAPHQRWLDLESGTWSQGQAASPSPYQSERRWVVGRDGVRVPVSLVWRKDIQAPKALLLYGYGAYGTPMRPYYQPQVLSLLDRGFVYAIAHVRGGGLLGEAWYKEGRGQQKQHSVDDFLAVAESLARDPAIDPARLFAMGGSAGGLLVAAALNQAPTRFAGAVLQVPFVDLLGTMQDPELPLTRQEYGEWGNPAIPADYAAMRRLSPYDNLHAAPYPPLYVTAGLHDSQVPYWEPLKWLARLRAHSTGAGPYLMHTELEGGHLANPRTAELRAAREYAFLLSLAGVRH
>NZ_CP006579.1|WP_025326480.1|1546002_1546803_+|alpha/beta-fold-hydrolase
MKHFMEIAGRRMAYLDEGQGPVLLFGHSYLWDSAMWAPQVEALKGQFRCIVPELWGHGNSDPLPAGPCSLETLARDHLALLDALDIEQCVLVGLSIGGMWGVELARMAPARLKGLVLMDTFVGWEPQIPCERYLGMLAMIEQLGSLPAPVIDQVAPLFFAHVPDPALMSGFKARLAQWPADKVASLVAVGRSFVTREDRIEWLEEMDVPSLVMTGCEDKARPVLEGYLMAEALACPFKEIPAAGHISTLENPEFVNRTLAEFLAGL
>NZ_CP006579.1|WP_025326481.1|1546900_1547710_-|MipA/OmpV-family-protein
MPPVRTLYSAALGALLTLLFATPARAEVDLGSLDIFVQDSPTSPVPKGLVLGGAVIGGDARYQGQDDTALAVPGFIYFGEQFMFLGDRARYYFHKDDSFAAYGYGRMRFGNLDPDDAPELAGMEERKWELEGGIGASLITPYALLSTRLSTDVTGRSNGQELLLWADFPILRDRLLIMPGMGMMIRSSKMANYYFGGVSGGEARGLRPEWDTGTTLSPMAAIITSYRFSPHWIGMFAANYERYDDDIADSPIVQHKGELYAGFGIGYIW
>NZ_CP006579.1|WP_025326482.1|1547897_1548968_-|AI-2E-family-transporter
MLDVLKRWYQTRFSDPDAVALFLLLVFCFAVLWLFGDLLAPLLVAVVMAYLLEWPVSRLQRTGLSRPLATSLVLLLFLSVTTMMLLGLIPTLVSQGVNLAKEAPSMLAHAQDAVRTLPEKYPEIVDVSLVETIIDNIRQRILAGGEQLVSASLSSLINVVAILIYAILVPLMVFFMLKDKQVLMGGLRRFLPRNRTLVNRVWVEMNDQIINYIRGKVIEILIVGVATYIPFALMGLRYSVLLAVAVGFSVLIPYIGAVAVTVPVAMVALFQWGLTPDFAWLMVAYLVIQALDGNLLVPLLFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVLNAWPKRDEAPRPAP
>NZ_CP006579.1|WP_025326483.1|1549029_1549260_-|sulfurtransferase-TusA-family-protein
MEQLDLTPWRCPEPLIRLKLWLRQARPGQSLHLILGDAGSRQDIPAYLQRLGHSVRPLEESAARLSLQLVVGNRPS
>NZ_CP006579.1|WP_025326484.1|1549402_1550836_+|M48-family-metallopeptidase
MASLPLLASLMSATFQAQANNQLPDIGTAGVAALPIEQEVRYGNAFMRFARAGLPIIDDPVLSEYIDDLGQRLLTNADGVRFPFTFFLINDPSINAAAFLGGRVKVHTGLFLYADNESELASVLAHEITHVTQRHIARYMEAQASSSAMTLAGLVGSIALAVINPTAGIAALQTTLGLSMQSAINYTRDNEYEADRIGMKTLYDAGFDPMGMASFFQKLAAEYRYASKPPEMLLTHPLPETRISEARARANSYGRRALPPSLDFWLAKVRIQVRYGTESPQALLTYFDSRLQKGDYPLKDAATYGKALALLQLKRTDEADTLMQSLAARHPEDLFVVDALTDIDLAKGRSAQAIARLERFRTRMPDNEVVVVNLGNAYLEAGNYQKSIALLDPYAREHDENSLAWSLLSDAYRKAGRMTDLHMARAETLSLRGDYQAAIDELIVARGTTSDKLTLARIEARITQLERAKKDLDSLKG
>NZ_CP006579.1|WP_025326485.1|1550891_1551386_-|TlpA-family-protein-disulfide-reductase
MGRVSGRAVEMKRICWLIVATLLGACTPAPQFADGTGKNVSLSALAGKPLLVNYFAPWCAPCLREMPLLAALHREGQIGVIAINYDSASPAELAELARRYQITVPLMVPLDEASLPFPRPGALPTSYLLDGKGQLQKTLVGELDEHKLAAIRAWAATQASSARP
>NZ_CP006579.1|WP_025326486.1|1551444_1551795_+|arsenate-reductase-(glutaredoxin)
MSETQIYHNPRCSKSRETLALLEQHGIAPEVVLYLEQAPSEDDIRTLLGQLGFADPRQLMRTKEELYKELGLADVQGDALIRAMHQHPKLIERPIVIKNGQARIGRPPELVLEILK
>NZ_CP006579.1|WP_025326487.1|1551791_1552172_+|DUF2069-domain-containing-protein
MSTRFARLLTLVGFFGLLAWVILWHLWLSPHPDLNPWLLPVIWTVPLLFPLKGIVQGNPYTHAWGNFVLMPYFLHALTLITTDEGERWLAVVELVFTTLAFVGTIYYARQRGRELGLSIRKKKDDR
>NZ_CP006579.1|WP_025326488.1|1552248_1553583_-|amidohydrolase-family-protein
MSLRLFCSALCGALLTGGTVHATEPAHTATLFDNVRIFDGKGSTLSAPSSVLVEGNLITKISQGGIKVEGEVQRIDGQGKTLMPGLIDAHTHLMFATLPQIAVLTNDITFTTVAATKAANDMLMRGFTSARDLGGPVFGLKKGIDMGLTNGPRIWPAGAMISQSGGHGDFRLPNELPALEGQYSFGERANAAMVADSPDAVHQRTREQLALGASQIKVMAGGGVASNYDPIDVTQYTVPEIRAAVEAADNWGTYVTVHAYTPKAVRQAIEAGVKCIDHGQMLDEDTARLMAEKGVWWSLQPFTDDRKSPFPEGSANRLKQLEMYKGTDHAYAMAKKYGIKTAFGTDALFSAQAAADQGTMLAKMGTWYTPAEVLKMATHDNAELLALSGPRNPYPGKLGVVEVGALADLLLVNGDPLKELSLVADPATNFKVIMKDGKVYKNTL
>NZ_CP006579.1|WP_025326489.1|1553766_1554387_-|DUF479-domain-containing-protein
MNYLAHLHLAAHTRSSLTGNLLGDFVKGPLPTGLAAPFDEGIWLHRKIDAFTDAHPEHRAAVACFEAPWRRFGGILVDMLYDHWLSHHWQQFSQDPLPRFLQQSYGQLLADHARLPEGLPMALKRMAEQDWIASYGRREGLGQALNGIGRRLRRPLLLGEALHTLDEGRWRDCELGFLRFYPEVMRFSEGQLTCYRATRAPQGTPG

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Crispr_ID: NZ_CP006579_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006579_13

1611508-1611641

Orphan

Consensus_repeat	Method
TGCGGCGATCCCCATAGACCTTGGGACGAGTCAGGCTGTCGATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006579_13

>merge|NZ_CP006579|13|1611508-1611641|CRISPRCasFinder
TGCGGCGATCCCCATAGACCTTGGGACGAGTCAGGCTGTCGATGGCAGTGGCTACGCAGAGGTTGGCTGTCGGCAAGAGGATGACTCATTTGCGGCGATCTCCATAGACCTTGGGACGAGTCAGGCTGTCGATG

>NZ_CP006579|13|13|1611508-1611641|CRISPRCasFinder
TGCGGCGATCCCCATAGACCTTGGGACGAGTCAGGCTGTCGATG	GCAGTGGCTACGCAGAGGTTGGCTGTCGGCAAGAGGATGACTCATT
TGCGGCGATCTCCATAGACCTTGGGACGAGTCAGGCTGTCGATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006579.1\|WP_025326540.1\|1612648_1615087_-\|electron-transport-complex-subunit-RsxC	unknown	unknown	gnl\|CDD\|235334
NZ_CP006579.1\|WP_025326532.1\|1604933_1605692_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223904
NZ_CP006579.1\|WP_025326545.1\|1619223_1619679_-\|DUF4124-domain-containing-protein	unknown	unknown	gnl\|CDD\|379230
NZ_CP006579.1\|WP_025326542.1\|1616363_1617260_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP006579.1\|WP_025326547.1\|1621334_1622810_+\|YfcC-family-protein	unknown	unknown	gnl\|CDD\|224207
NZ_CP006579.1\|WP_025326544.1\|1617598_1618897_-\|PAS-domain-containing-methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP006579.1\|WP_025326543.1\|1617321_1617519_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_005326871.1\|1615670_1616252_-\|electron-transport-complex-subunit-RsxA	unknown	unknown	gnl\|CDD\|235352
NZ_CP006579.1\|WP_025326536.1\|1609366_1610008_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|182661
NZ_CP006579.1\|WP_041204452.1\|1603172_1604108_-\|cobalamin-biosynthesis-protein	unknown	unknown	gnl\|CDD\|181573
NZ_CP006579.1\|WP_025326533.1\|1605898_1606828_-\|ZIP-family-metal-transporter	unknown	unknown	gnl\|CDD\|223505
NZ_CP006579.1\|WP_025326548.1\|1622875_1624090_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|181738
NZ_CP006579.1\|WP_025326538.1\|1610835_1611468_-\|electron-transport-complex-subunit-RsxG	unknown	unknown	gnl\|CDD\|179350
NZ_CP006579.1\|WP_025326546.1\|1619978_1621172_+\|trans-2-enoyl-CoA-reductase-family-protein	unknown	unknown	gnl\|CDD\|237460
NZ_CP006579.1\|WP_025326535.1\|1608878_1609286_-\|lactoylglutathione-lyase	unknown	unknown	gnl\|CDD\|272886
NZ_CP006579.1\|WP_025326531.1\|1604131_1604824_-\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	unknown	unknown	gnl\|CDD\|180148
NZ_CP006579.1\|WP_025326534.1\|1607164_1608796_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP006579.1\|WP_025326537.1\|1610038_1610797_-\|electron-transport-complex-subunit-E	unknown	unknown	gnl\|CDD\|237091
NZ_CP006579.1\|WP_025326529.1\|1602340_1603180_-\|cobalamin-binding-protein	unknown	unknown	gnl\|CDD\|238564
NZ_CP006579.1\|WP_025326541.1\|1615101_1615668_-\|electron-transport-complex-subunit-RsxB	unknown	unknown	gnl\|CDD\|235347

Protein	Function_ID	Function_description	E-value
NZ_CP006579.1\|WP_025326540.1\|1612648_1615087_-\|electron-transport-complex-subunit-RsxC	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0
NZ_CP006579.1\|WP_025326532.1\|1604933_1605692_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223904	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].	4.35525e-08
NZ_CP006579.1\|WP_025326545.1\|1619223_1619679_-\|DUF4124-domain-containing-protein	gnl\|CDD\|379230	pfam13511, DUF4124, Domain of unknown function (DUF4124). This presumed domain is found in a variety of bacterial proteins. It is found associated at the N-terminus associated with other domains such as the SLT domain and glutaredoxin domains in some proteins. The function of this domain is unknown, but it may have an Ig-like fold.	7.99641e-08
NZ_CP006579.1\|WP_025326542.1\|1616363_1617260_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.85894e-20
NZ_CP006579.1\|WP_025326547.1\|1621334_1622810_+\|YfcC-family-protein	gnl\|CDD\|224207	COG1288, COG1288, Predicted membrane protein [Function unknown].	1.39042e-154
NZ_CP006579.1\|WP_025326544.1\|1617598_1618897_-\|PAS-domain-containing-methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.33729e-41
NZ_CP006579.1\|WP_005326871.1\|1615670_1616252_-\|electron-transport-complex-subunit-RsxA	gnl\|CDD\|235352	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional.	2.77718e-116
NZ_CP006579.1\|WP_025326536.1\|1609366_1610008_-\|endonuclease-III	gnl\|CDD\|182661	PRK10702, PRK10702, endonuclease III; Provisional.	9.28797e-150
NZ_CP006579.1\|WP_041204452.1\|1603172_1604108_-\|cobalamin-biosynthesis-protein	gnl\|CDD\|181573	PRK08878, PRK08878, cobalamin biosynthesis family protein.	3.06376e-23
NZ_CP006579.1\|WP_025326533.1\|1605898_1606828_-\|ZIP-family-metal-transporter	gnl\|CDD\|223505	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism].	1.30339e-45
NZ_CP006579.1\|WP_025326548.1\|1622875_1624090_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|181738	PRK09265, PRK09265, aminotransferase AlaT; Validated.	0
NZ_CP006579.1\|WP_025326538.1\|1610835_1611468_-\|electron-transport-complex-subunit-RsxG	gnl\|CDD\|179350	PRK01908, PRK01908, electron transport complex protein RnfG; Validated.	2.57174e-111
NZ_CP006579.1\|WP_025326546.1\|1619978_1621172_+\|trans-2-enoyl-CoA-reductase-family-protein	gnl\|CDD\|237460	PRK13656, PRK13656, enoyl-[acyl-carrier-protein] reductase FabV.	0
NZ_CP006579.1\|WP_025326535.1\|1608878_1609286_-\|lactoylglutathione-lyase	gnl\|CDD\|272886	TIGR00068, Lactoylglutathione_lyase, lactoylglutathione lyase. Lactoylglutathione lyase is also known as aldoketomutase and glyoxalase I. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice. [Central intermediary metabolism, Amino sugars, Energy metabolism, Other].	1.06373e-78
NZ_CP006579.1\|WP_025326531.1\|1604131_1604824_-\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	gnl\|CDD\|180148	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase.	1.40877e-116
NZ_CP006579.1\|WP_025326534.1\|1607164_1608796_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	9.55836e-64
NZ_CP006579.1\|WP_025326537.1\|1610038_1610797_-\|electron-transport-complex-subunit-E	gnl\|CDD\|237091	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional.	3.17279e-132
NZ_CP006579.1\|WP_025326529.1\|1602340_1603180_-\|cobalamin-binding-protein	gnl\|CDD\|238564	cd01144, BtuF, Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).	7.60702e-66
NZ_CP006579.1\|WP_025326541.1\|1615101_1615668_-\|electron-transport-complex-subunit-RsxB	gnl\|CDD\|235347	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional.	9.98439e-125

>NZ_CP006579.1|WP_025326538.1|1610835_1611468_-|electron-transport-complex-subunit-RsxG
MLKSMRKNGVTLALFALACTAMVVLTNELTRDRIAHQQQLEKLRTLEALLPAGSYDNDLVASCKLVRSREYLGSDQPMPLYTATLKGEHTGYALETVAPDGYSGAIRMVVGTDAKGAVSAVRVLAHKETPGLGDKIELKKSSWIESFVGKFLTKENAASWAVKKDGGEFDAFTGATITPRAVVKAVKNLLLLQQEHPELLQEAPSCDATP
>NZ_CP006579.1|WP_025326537.1|1610038_1610797_-|electron-transport-complex-subunit-E
MEQVDVIDGQSPAEEGNSRREELKELMLQGLWKNNPSLVQVLGLCPTLAVSSTFTNALGLGLATMVVLISSNLAISLVRNWVPKDIRIPVYVMIIAALVTSVQLLMNAYTYGLYQALGIFIALIVTNCVIIGRAEAYASKNPPLLAAIDGFMMGLGFTLVLLVLGGLREIIGMGTLFDGADLLLGDWAKSLRIELFHADASLLLAILPPGGFIGLGLLIAGKNAINDWMGRKQRADKAHCSLPAAGARATQL
>NZ_CP006579.1|WP_025326536.1|1609366_1610008_-|endonuclease-III
MNNQKRREILERLRENNPHPTTELNFTTPFELLIAVLLSAQATDVSVNKATDKLYPVANTPAAMLALGVDGVKEYIKTIGLFNTKAENVIKTCAILLERHGGEVPEDREALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVSNRTGFAVGKNVDQVEEKLLKVVPAEFKLDVHHWLILHGRYTCLARKPRCGSCIIEDLCEYKEKVYPES
>NZ_CP006579.1|WP_025326535.1|1608878_1609286_-|lactoylglutathione-lyase
MRILHTMLRVGDLQRSIDFYTRVLGMTLLRKSENSEYKYTLAFVGYGDEKDEAVIELTYNWGVSEYELGSAYGHIALEADDIYGTCDALRAAGAKITREPGPVKGGTTVIAFVEDPDGYKIELIAKKDTGTGLGV
>NZ_CP006579.1|WP_025326534.1|1607164_1608796_+|methyl-accepting-chemotaxis-protein
MSYKNLSIGKKIAVVFAVIAAINVIFGLFLASELRGVRDRVLNFTDSTLPSVISVENLLYDVSYVRRAQFALLMIEDTADQQARRGRIQESVAKVERALSAYEATVGAEHERQVFNRAKQQWLHYLSAVNRVDSLLVQGLKEQARDALFQSNGSYTELEQGVNALVEVNLGFVKENRGSLLGSVNMVTTFATVSIGALLLFMGVMTWFLTRQICLPLQAVVAQANAIAQGNLTHRLDRQHIGQDELGMLASASLKMQDNLRGLIEEVVAAVTQLGAAIEEVSAVSEQSAQGIQSQQQEISLVATAMAQMKATVADVAGNTEVASESASSANALARRGNQDVQGALVAITRVAEEMEQAGTLVAELERESAQINLVVDVIRGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAGRTQASTGEIVAIIETLQARANQAKAVTSQSCEMIRQCVSQSEQTSSGIQQIEEAVGQIADMAIQIASACGEQDAVSDELGRNVERINESSNEVATGADHTARACLELSQLAASLRQTIGRFRLA
>NZ_CP006579.1|WP_025326533.1|1605898_1606828_-|ZIP-family-metal-transporter
MDNASTLSPSWSVQLREQIQERPLIALGLLLALATVMLLLLQSLIMLAAGDISPGVRYGLIGGVAGFAATALGALPALFLRSVPQRVEDAMLGFAAGMMLAASAFSLLLPGLEAAEGITGDGFLAAAVVVAGMTLGVLLMLGLDQFTPHEHDKTGPCGPGHESCSRVWLFVFAIALHNLPEGMAIGVSFSQGDMAVGLPLTTAIALQDIPEGLAVALAMSAAGFRPSVAVLVAIGSGLLEPLGALLGVGLASGMAIAYPIGLGLAAGAMLFVVSHEVIPETHRNGHQTHATLGLMAGFALMMTLDTALG
>NZ_CP006579.1|WP_025326532.1|1604933_1605692_-|ABC-transporter-substrate-binding-protein
MIVRMALLLCLLAPASGAVGATEVYHTAAQAKSAPKYLTLAGGKTGGICVDLFRRMEAREPALRIEGDQTTLPLKRLEKKVRHGQLDFICGVGDSPERRSQFVYLQPAIFTVRYHLAVRHDDPVEIHRWEDVRALGQQGSILINHGSGAIARLQAIGGLIIDSGGIGSKANYDKLLMKRGRFVYYRSPGFESDLREHGLEERIRILPTVMEETPFYILFHRRSPPERLALFANTLQQLASSGELAALVEHYH
>NZ_CP006579.1|WP_025326531.1|1604131_1604824_-|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase
MKVGIIGAMEQEVALLRSQLSEPTTLQLGGCEFYQGRLAGKEVILTRSGIGKVAASVATSLLLEKFAPDCVINTGSAGGFAQDLHIGDVVIASEMRFHDVDVTAFGYEMGQMAQQPAAFPCDDKLIALAQVCIAEQGKHQTKVGLICTGDQFMCKPNAIAKARADFPQMLAVEMEGAAIGQVCHMFKVPYLVVRAMSDIAGKEQVESFDAFIEVAGQHSAEVIIALLGKL
>NZ_CP006579.1|WP_041204452.1|1603172_1604108_-|cobalamin-biosynthesis-protein
MMTALASTTAAIMVGAALLEALLPWPARFRPGATVPLLTRLGHKVYRPDGSPSQQRQAGLLALLVVWVPCAAGLWAVRNLSLSEPLFDLLFLLLMLESRPLRELAQGSRALATQETLVVARLQAASWLRRETGALSVMGLNKAVSETCVLRLVGQWAGPLLGFALAGVQGALLWRLAQLMNQAWSPKQAEFVHFGRAASALYQGLCAPAILLLALPLALTRLRQLGGKLRLALRWPYPAMGGLLSLLAQTTGCRLGGPRYYQGQLVRLAVFDEGAEPDAALPLRLLHRLLLIGWGWLGLSLLLTLMTLTHG
>NZ_CP006579.1|WP_025326529.1|1602340_1603180_-|cobalamin-binding-protein
MADRFPLRVLCLLLCLLGWPLSGAAATPQRIISLTPHLTELLYDIGAGDRIVATDDASDFPPEVAPLPRVANYRSINLEALLAQKPDLVVAWRSAQSRMLAPVEKLGIPVFYSEPTDFASLGTEMRSLGRLLGTRQKADQQADAYLARLDALKQRYGKPKPVSVFYQLWYPPLTSVNDSTWPGRAIRLCGGRNIMADAKAPYPQVGLEQVIKANPGLILAGSRDPAVLVHWRQWPMLDAVKQQRLLLINPDELHRFTPRALNAVEQLCEAIARSKPPST
>NZ_CP006579.1|WP_025326540.1|1612648_1615087_-|electron-transport-complex-subunit-RsxC
MQHLLERIKAGTLWDFHGGIHPPENKHQSSLTPVVDAGLPPQLIIPVRQHAGPAGELLVRVGDRVKKGQPLTRHDKGRIVPVHASTSGTVTAIEQHTVAHPSGLDDLCVILTPDGEDVWGTRNPQPDYWNLERGELLERIQQAGVAGLGGAVFPTHSKLDGRGQLTEILIVNGLECEPYITTDDRLMQEYADEIMDGIRVLKHLLKPKLTLIGVEDNKPAAIDALTRHATDPDVLVKSVPTKYPSGGAKQTIELLTGRQVPKGGRAVDMGIMVLNVATVFAIKRAIIDGEPLISRIVTLTGDAFKQPGNAWVRLGTPVRWLLQRFELQPEADQRVIMGGPMMGFTLPHAMVPVVKATNCLLSPTRAELPPPGPEQACIRCSACADACPANLLPQELYWYSRVKEYDKAEKLNLFDCIECGACAWVCPSEIPLVQYYKIAKDDIREVRAEAEKAERAKQRFEAKQARFERDKAAREARHAEAAAQRRQAMAAAGGDDPVAAALARLKAKQDAASAETQPDNAAMMAAREARKQEALARRAAKAAETAQTDDAGTAVVAEADPKKAAIAAALAHAKAKKAAQAAGDEVTTDSPAAPSEPVAEPVPEVDPKKAAIAAAIARAKAKKAAQTTGEEVAPDAPVSSSDAVSDTQAAPSEPVAEPAPEVDPKKAAIAAAIARAKAKKAAQAAGDEVAPDAPVSSSDAVSDTQAAPSEPVAEPAAEVDPKKAAIAAAIARAKAKKAAQTAGDEVASDAPVSSSDAVSNTQAAPSEPVAEPAPEVDPKKAAIAAAIARAKAKKLAADAAANTSSPSTDKSH
>NZ_CP006579.1|WP_025326541.1|1615101_1615668_-|electron-transport-complex-subunit-RsxB
MIHILFAILVLALLALAFGIILGYAAVKFHVQADPIVDQLDALLPQTQCGQCGYPGCKPYAEALANGDQINKCVPGGDATMRKIADLMGVEPQPLDGGDEAAVPVKKVAFIHEDMCIGCTKCIQACPVDAILGATKAMHTVIAAECTGCDLCVDPCPTDCIEMIPVPTTVDNWKWDLAKVAIPVKIVE
>NZ_CP006579.1|WP_005326871.1|1615670_1616252_-|electron-transport-complex-subunit-RsxA
MTEYLLLLVSTVLINNFVLVKFLGLCPFMGVSGKLETAIGMGLATTFVMTLASACSYLMEHYILIPLDIAYLRTLGFILVIAVVVQFTEMVIRKSSPTLYRLLGIFLPLITTNCAVLGVALLSINERHNFIQSIIYGFGAACGFSLVLILFAAMRERLVAADVPAPFRGVSIAMVTAGLMSLAFMGFTGLIKI
>NZ_CP006579.1|WP_025326542.1|1616363_1617260_+|DMT-family-transporter
MRPLPILTLTLAMLLWSSSFIALKHVLEVWSFGQVLFMRMLVASCCWLLCYRQLGRFSYQKGDWRWLALMGALEPCLYFLLEVNALRYTSAGQAGMVCALLPLMVALVAFVLLRERVSRRQLLGFAIAICGIALLGLAEGADEFAPNALLGNSLEMGAMLCAATYSVVFKKLSSRYGVMTLTALQAFVGTLFFAPFAFSAPWPADWDWQDMGVILFLGAFVTLGAYLLYNWSVTQVKVTLAAAYVNLIPVFTLLLAYLLLGETLGALQWVACAAVLAGIGVGQLPGGKNRVRSAAAQS
>NZ_CP006579.1|WP_025326543.1|1617321_1617519_+|hypothetical-protein
MSDMKLLAEAKTLLSHHPFTLTDARALEALEEAAVGEEGLCIAELWELALGQADEEARRYLQGED
>NZ_CP006579.1|WP_025326544.1|1617598_1618897_-|PAS-domain-containing-methyl-accepting-chemotaxis-protein
MFWNHKASKEANEQVARMAELGAFEQAIQSQVPFIQFTPAGMVTFVNDLFLKIVGFQREEVIGKHHSTLCFPEDVKTRDYESLWQDLRSGISRNGRFIRQSKSGKAIWLEATYFPIMIDGKVARIAKVASDVTQQQSSLERTQALLAALDKSLAVIDFQPDGTVITANQNFLHCFGYRLEEVVGKHHRQFCDPEFYQKNPNFWHDLGSGDIKSGLFMRLGHRGEKIWLEATYNPIFNHEGKVVKIIKLASDITERVEKSISTREAAQKACAIASETVASAAKGREVIDKVLETSSHINTSVNEVSKQIDLLNQQSKSIESIISTISVIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAARTSTSTNEIVSVIKHNSDITSKITQTVSVVSGKAVAGQDQANIIADVIKEIIEDANSVSDTVKSLSI
>NZ_CP006579.1|WP_025326545.1|1619223_1619679_-|DUF4124-domain-containing-protein
MTRMLIISLGCLVAVTAPVARADVYQCTRNGQVTFSDIPCSSDAKPLPLNIYTPSPEEVERATRQTREIEENLASSQKQRQIDALRAEMEAKKQQMNREIAGERNEQTATTTETSDLEGRMRSPGVQAVTRQYQNEMEALNKKIDTLQQSK
>NZ_CP006579.1|WP_025326546.1|1619978_1621172_+|trans-2-enoyl-CoA-reductase-family-protein
MIIKPKVRGFICTTTHPVGCEANVRRQIAYTQAKGTIENGPKKVLVIGASTGYGLASRIATAFGSGAATIGVFFEKPSSETKTGSAGWYNSAAFDKAAKEAGLYAKSVNGDAFSHECRAKVIELIKQDLGQIDLVVYSLASPVRKMPDTGEVVRSALKPIGEVYTSTAIDTNKDQIITATVEPANEEEIQNTITVMGGQDWELWMAALRDAGVLADGAKSVAYSYIGTDLTWPIYWHGTLGRAKEDLDRAATAIRGDLAAKGGTAHVAVLKSVVTQASSAIPVMPLYISMAFKIMKEKGIHEGCMEQVDRMLRTRLYASDMALDEQARIRMDDWELREDVQQTCRDLWPSITTENLSDLTDYAGYKQEFLRLFGFGLDEVDYDADVNPDVTFDVVEL
>NZ_CP006579.1|WP_025326547.1|1621334_1622810_+|YfcC-family-protein
MTTPNEAPKKRQLPTVYTLLFIIIALMAALTWVLPAGKYNYVTAKTQQPVAAAAVADYSGDERLLPVPGSYTELPSRPQGVFEVLKAPIQGFHKAADVALFVLIIGGFLAVTMQCGALDAGVGAIVRAFAGRERLLIPVLIALFALGGSTFGMAEETVAFWALIVPVMMAAGFDRMVAAGIILLGSGVGVLASTVNPFATGIASGFAGIPIGEGIGLRVIQWLLLVIFASWFVMRYAKQVQQDKSRSVLADITYDDEFSQMKSGNLAFTGKQKLTMLVFFGTFLLMIYAVVPWSDLGIDLLPTLGWWFDELSTLFFSASILIAIINRMPESNYVATFLNGARDLIGVALVVAVARGIYVVMEQGVIIDTILHWAEGLVTGLSSSVFILMAYLVHIILSFFIPSTSGLATVSMPLMGPLADFSGISRELVITAYQSASGWINLFAPTAAHLVAGLALARIPYDRFVRWVLPFIIGVALITMAVLVAGALLHG
>NZ_CP006579.1|WP_025326548.1|1622875_1624090_-|pyridoxal-phosphate-dependent-aminotransferase
MFTIDKSHKLDDVCYDIRGPVHKEARRLEDEGHRIIKLNIGNPAPFGFDAPEEIIKDVILNMPQSQGYCDSKGLFSARKAVMQYYQQKGMRKVDIDDIYIGNGASELIVMAMQALLNNGDEMLVPSPDYPLWTAAVTLSGGHAVHYRCDEGADWHPDLDDIRARITPRTRGLVLINPNNPTGAVYGSEFQLELIEIARQHNLIIFADEIYDKILYDDISHTSVCTQCDDVMVVTFNGLSKAYRACGFRQGWMVITGPKGRAKGYIEGLEMLASMRLCANVPMQHAIQTALGGYQSINELILPGGRLRRQRDKAWELLNEIPGVSCVKPKGALYMFPRLDPKVYDIRDDQKMVFDLLQQEKLLLVQGTGFNWPAPDHFRLVFLPREEELEEAIGRLARFLKGYKQ

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Crispr_ID: NZ_CP006579_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006579_14

1674870-1674965

Orphan

Consensus_repeat	Method
TCAGGGCAGGGTATCGGCCCGGAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006579_14

>merge|NZ_CP006579|14|1674870-1674965|CRISPRCasFinder
TCAGGGCAGGGTATCGGCCCGGAAGGTATTGCAAGGATCTGCGGCCTTCGTCTCTTCAATGTTTATTGATCTCAGGGCAGGGCATCGGCCCGGAAG

>NZ_CP006579|14|14|1674870-1674965|CRISPRCasFinder
TCAGGGCAGGGTATCGGCCCGGAAG	GTATTGCAAGGATCTGCGGCCTTCGTCTCTTCAATGTTTATTGATC
TCAGGGCAGGGCATCGGCCCGGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006579.1\|WP_025326591.1\|1677451_1678546_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270700
NZ_CP006579.1\|WP_025326592.1\|1678682_1680035_-\|lysine-sensitive-aspartokinase-3	unknown	unknown	gnl\|CDD\|236376
NZ_CP006579.1\|WP_025326588.1\|1672684_1673977_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NZ_CP006579.1\|WP_025326599.1\|1687128_1688196_-\|carotenoid-1,2-hydratase	unknown	unknown	gnl\|CDD\|227908
NZ_CP006579.1\|WP_025326593.1\|1680451_1681780_-\|amino-acid-N-acetyltransferase	unknown	unknown	gnl\|CDD\|235386
NZ_CP006579.1\|WP_025326596.1\|1683288_1683825_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_CP006579.1\|WP_025326585.1\|1667056_1667971_+\|DUF808-domain-containing-protein	unknown	unknown	gnl\|CDD\|377542
NZ_CP006579.1\|WP_041204244.1\|1662676_1663168_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025326582.1\|1665220_1666135_+\|protein-translocase-subunit-SecF	unknown	unknown	gnl\|CDD\|237275
NZ_CP006579.1\|WP_025326586.1\|1668144_1669923_+\|M3-family-oligoendopeptidase	unknown	unknown	gnl\|CDD\|341070
NZ_CP006579.1\|WP_025326589.1\|1674204_1674522_+\|heavy-metal-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|179490
NZ_CP006579.1\|WP_025326587.1\|1670037_1671882_+\|M3-family-oligoendopeptidase	unknown	unknown	gnl\|CDD\|341070
NZ_CP006579.1\|WP_025326584.1\|1666327_1666930_-\|DUF924-domain-containing-protein	unknown	unknown	gnl\|CDD\|377592
NZ_CP006579.1\|WP_005331594.1\|1672070_1672610_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|179896
NZ_CP006579.1\|WP_148297614.1\|1685429_1686824_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025326581.1\|1663314_1665117_+\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|183831
NZ_CP006579.1\|WP_025326594.1\|1682032_1682665_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|234604
NZ_CP006579.1\|WP_025326597.1\|1683830_1684202_-\|MmcQ/YjbR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|225197
NZ_CP006579.1\|WP_025326598.1\|1684311_1685103_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP006579.1\|WP_025326595.1\|1682941_1683277_-\|DUF3802-family-protein	unknown	unknown	gnl\|CDD\|315053

Protein	Function_ID	Function_description	E-value
NZ_CP006579.1\|WP_025326591.1\|1677451_1678546_+\|hypothetical-protein	gnl\|CDD\|270700	cd05151, ChoK-like, Choline Kinase and similar proteins. This subfamily is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate and displays negligible activity towards N-methylated derivatives of Etn. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	0.00443428
NZ_CP006579.1\|WP_025326592.1\|1678682_1680035_-\|lysine-sensitive-aspartokinase-3	gnl\|CDD\|236376	PRK09084, PRK09084, aspartate kinase III; Validated.	0
NZ_CP006579.1\|WP_025326588.1\|1672684_1673977_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	2.35374e-161
NZ_CP006579.1\|WP_025326599.1\|1687128_1688196_-\|carotenoid-1,2-hydratase	gnl\|CDD\|227908	COG5621, COG5621, Predicted secreted hydrolase [General function prediction only].	9.98235e-89
NZ_CP006579.1\|WP_025326593.1\|1680451_1681780_-\|amino-acid-N-acetyltransferase	gnl\|CDD\|235386	PRK05279, PRK05279, N-acetylglutamate synthase; Validated.	0
NZ_CP006579.1\|WP_025326596.1\|1683288_1683825_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.70954e-21
NZ_CP006579.1\|WP_025326585.1\|1667056_1667971_+\|DUF808-domain-containing-protein	gnl\|CDD\|377542	pfam05661, DUF808, Protein of unknown function (DUF808). This family consists of several bacterial proteins of unknown function.	2.17551e-143
NZ_CP006579.1\|WP_025326582.1\|1665220_1666135_+\|protein-translocase-subunit-SecF	gnl\|CDD\|237275	PRK13022, secF, protein translocase subunit SecF.	1.26084e-91
NZ_CP006579.1\|WP_025326586.1\|1668144_1669923_+\|M3-family-oligoendopeptidase	gnl\|CDD\|341070	cd09607, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF). Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and is similar to oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid.	0
NZ_CP006579.1\|WP_025326589.1\|1674204_1674522_+\|heavy-metal-binding-domain-containing-protein	gnl\|CDD\|179490	PRK02877, PRK02877, hypothetical protein; Provisional.	2.81198e-60
NZ_CP006579.1\|WP_025326587.1\|1670037_1671882_+\|M3-family-oligoendopeptidase	gnl\|CDD\|341070	cd09607, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF). Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and is similar to oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid.	0
NZ_CP006579.1\|WP_025326584.1\|1666327_1666930_-\|DUF924-domain-containing-protein	gnl\|CDD\|377592	pfam06041, DUF924, Bacterial protein of unknown function (DUF924). This family consists of several hypothetical bacterial proteins of unknown function. Structurally, this family resembles TPR-like repeats.	1.016e-82
NZ_CP006579.1\|WP_005331594.1\|1672070_1672610_+\|alpha/beta-hydrolase	gnl\|CDD\|179896	PRK04940, PRK04940, hypothetical protein; Provisional.	6.83008e-139
NZ_CP006579.1\|WP_025326581.1\|1663314_1665117_+\|protein-translocase-subunit-SecD	gnl\|CDD\|183831	PRK12933, secD, protein translocase subunit SecD.	0
NZ_CP006579.1\|WP_025326594.1\|1682032_1682665_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	gnl\|CDD\|234604	PRK00058, PRK00058, peptide-methionine (S)-S-oxide reductase MsrA.	3.9351e-138
NZ_CP006579.1\|WP_025326597.1\|1683830_1684202_-\|MmcQ/YjbR-family-DNA-binding-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	1.26574e-40
NZ_CP006579.1\|WP_025326598.1\|1684311_1685103_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.21672e-27
NZ_CP006579.1\|WP_025326595.1\|1682941_1683277_-\|DUF3802-family-protein	gnl\|CDD\|315053	pfam12290, DUF3802, Protein of unknown function (DUF3802). This family of proteins is found in bacteria. Proteins in this family are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif.	4.51123e-55

>NZ_CP006579.1|WP_025326589.1|1674204_1674522_+|heavy-metal-binding-domain-containing-protein
MILSTTPTLEGKAIREYRGIVVGEAILGANIFKDLFAGIRDIIGGRSGAYEKELARAREIAFEELKERAQALGANAVVGIDIDYEVVGQNGSMLMVSISGTAVVI
>NZ_CP006579.1|WP_025326588.1|1672684_1673977_+|NAD(P)/FAD-dependent-oxidoreductase
MMNIVVVGGGAGGLELATSLGRKLGKKNKARITLVDRNRTHLWKPLLHEVATGSMDAGIDALSYQSHAKNHGFEFQLGSLTDIKRDEKRIVLAPIHDESGALVVNERELAYDVLVMAIGSVSNDFNTKGIKDHCIFLDSPSQAHRFYNSMMNRFLQFATEYKPGDKVKIAIVGGGATGVELSAELYNAVEQLYAYGFKNLTTDSLKVTLVEAGPRILPALPERISGSAHQELVKLGVDVRTATMITEATADGLHTKDGELIEADLMVWAAGIKAPDFMKEIAGLETNRINQLVVKETLQTTRDENIFVIGDCAACPQPDGKFVPPRAQSAHQMATQAFKNILAKMNGGEMKPYLYHDHGSLVSLSRFSTVGSLMGNLMRGSMMVEGYIARIVYISLYRMHQVALHGYIKTGLIMLVGRINRVLRPSMKLH
>NZ_CP006579.1|WP_005331594.1|1672070_1672610_+|alpha/beta-hydrolase
MIIYLHGFDATSPGNHEKVLQLQFIDDDVRFVHYSTVHPRHDMSHLLKEVKKQLDMSTDPKPLICGVGLGGYWSERIGFLCGIKQVVFNPNLHPEENMQGKIDRPEEYEDIGTKCVTEFRNKNSGNCLCILSVQDEIRDNRDTERELKNYYDIVWDERETHKFKNISHHLQRMKAFKEA
>NZ_CP006579.1|WP_025326587.1|1670037_1671882_+|M3-family-oligoendopeptidase
MQQRVYPQQWQNQHIYPSLDSSVLEADMSLARASLAELAVFIDGLGPLRDQGAALQDGLRDGLRDGLRDGLREVRLRARRIREIGWNIAVLAACTGSQDARDPLAKQLASRARALNADLFKTLAPIEDLMLGLPEAEFGQLMQDPLLGEEEYRLRHERRLQDQRLPVEAEQLVIGLGTDGLHAWGNLYNDLVGKIRVQVAGQERGLAEASNLLSSPDRAQRKEAFDAISAGWEGEQETVAAILNALNGWRLELSRQRGKVRTLDALDLSCHQSHIKRATLDTLMRETWQARHLGQRALGLMARRLGIEELGPEDLFAPPPASSHRSIPFEEAIEIIALAFAGFDPEMGAFARMMAERGWIDAAPTPNRRTGAYCTKFADPVEPRVFITYAGTMDNVITLAHELGHAWHNWLIRDLPMSQRSYPMTLAETASIFAETLVRSALFEQARSAEERQAIAWAEADGAATFLVNIPARFDFEQALVAEREQGYVSSARLKALTDEAWGRWYEESLGRYHPMFWAAKAHFSIAGFGFYNYPYLFGYLFSLGVYQQLMSRKGAGEANVAEAYRALLRDTGRMSAEDLVAKHLGQDIREAAFWQGSLALVAAAVDRFEQTQG
>NZ_CP006579.1|WP_025326586.1|1668144_1669923_+|M3-family-oligoendopeptidase
MTNTLWQDDHIYAAPDCPAIDADFQRAAEALTEIASLLASLPETRDINALRHLLRAIRRQANVVKAQAWNSQTFAYNRLSRNGRDEAARVLLSRGQQLQARLAQLVKPVALFWLNAPEDQVRALLQDPELFELAYLIRHDRRLQDQALSLESEQLIEGLAVDGLQAWGDLYDSLVARLRPVVDGEPMGLAQADNLLAHPDRARRASAWHGIQAAWAGEQETVAAILNAINGWRNELAAQRGKGRRLDALDLSCHQGHLERATLETLMTQAEAHKALGRRTLRAMACAQGITDFAPWDLYAPAPYGAQASFGFGQALTLVADAFAAFDPEMGDFVRMMADRGWIDAAPSDNRRSGAYCTEYADPAEPRVFLTFEGTMDNVITLAHELGHAWHSWLLRELPLEQRDYPMTLAETASLFAETLVRDALLARAQTREQRLTIAWMDGEQVVSLLLDIPSRFHFERALVAGRAEGYLGAGQLRAMMKSAKQQWYGDSLSQYDELFWASKSHFSIAEFGFYNYPYLFGYLFSLGLYAQKERVGADFVPAYRALLADTGRMSAESLVEKHLGVDIREPAFWQESLRSVEEAVERLERLV
>NZ_CP006579.1|WP_025326585.1|1667056_1667971_+|DUF808-domain-containing-protein
MAGTSLLALLDDIASVLDDVALMTKMAAKKTAGVLGDDLALNAEQVSGVRAERELPVVWKVAKGSFRNKLILVPAAIAISALIPWLITPLLMLGGAYLCFEGAEKLAHKFLPHDSGETASSAQAIPDDLEAFEQQKIKGAIRTDFILSAEIIVIALGTVQGSSLGLQIAVVAGIALLMTVGVYGLVGLIVKLDDIGLHLLQKPDASVLRRALGRGLLVTAPRLMHLLALVGTIAMFMVGGGILVHGWPFAHHLIEGVAASLAPLAGGTVLAAVTPTLLSALVGVVAGLLLVLAMTLVGKLTPAK
>NZ_CP006579.1|WP_025326584.1|1666327_1666930_-|DUF924-domain-containing-protein
MQPWQPLLDFWFGDDSGDAPRAARQAPLWWGKNRETDALLAHRFGELAQAAAEGELAHWAEVPVGRLALILLLDQLPRNIHRAMPAAFAQDAKARDLCLRGLSLGADKALSPLARVFFYLPLEHAESREQQARSVALFEALAAEQADGPARETFEGFADFARRHQVIIQRFGRFPHRNAILGRTSTPEEAEFLQQPGSGF
>NZ_CP006579.1|WP_025326582.1|1665220_1666135_+|protein-translocase-subunit-SecF
MLRMIIAMGLTRWRYIGMWASVLLTVASIAVLAINGLSLGLDFTGGILLEFRIQTLKEAHELNALLSAPLAGVVELHGAGVPGEWLIKLPPHELPWAAEDLATMLGQQLALPVELLRTTIVGPQVGAELFQQGMLAVLVASLAISAYLAVRFEWRQAIGILVSVLHDGLVALGLLALFNIEFDLNVIAGLMAVIGYSLNDSIVISDRLRDLLGSRTQMGIHQCSDVAIKATFSRTMITSGTTLFTVGALLLFGGDALFGFSFTLFAGILVGTISSITVASTVQELLGLSPQAYQKKEEDLAEAA
>NZ_CP006579.1|WP_025326581.1|1663314_1665117_+|protein-translocase-subunit-SecD
MRKKSHTILNRMSLWQYALLLLMLITFTFYSLPTFFGEQPSLGLHGQTRLSEAQQRLLQEHQIAPQKQIEQKERVELVFATQAEQQRAKQLLEQQGVDSAALTLEFHSNAPTWISQLGADPIKLGLDLRGGSQLLIGVDVDFVIDNQTKNLVDTLRTRFREANLRGASVMRTAQGALAVTLPDVDGQDGWLTIIKESAGTRQDQWKLSRSGNELKLVLSDAERTLLVNNAVTQNLSILKKRINELGIVEASVQRQGQDGIRIELPGVHNPKQAKEVIGATASLAFYEAKADSRFFMADRNGQAVGLARKPVLSGEHIVDARANMGEMGQPQVNIVLDTLGGSKMNQFSRQHVGKPMATVFTEYKTNAEGKLRARSEVINVATIQTALGNQFRITGIGSLPEAQELAMLLRAGALTAPLKILEERSIGPTLGLQNIEAGFTALAFGMAGMMLFMMAWYRKFGWVAITALIGNLLMQVGMLAVLPGAVLTLPGIAGLVLTVGMAVDTHVLIFERIKDRLREGGSLANAIDFGYRSAFRTIFDANITTLICAVVLYAIGSGPLQGFSITLILGLISSMVTGIWGTRAIINPLWGNSRAKLLRV
>NZ_CP006579.1|WP_041204244.1|1662676_1663168_+|hypothetical-protein
MVVCPFYYSGINFLSLLDKVKLAAMTLLIALTLLLSTVSVEGLEVPASQHAAQLMGEAATDGAQMNHGASDSDDGVVKFVGSHQSHLLRLEHSLSRDHQPGSVVYELVMSWAQQAILLLLCGLLLYAALFYPRTSFRDHFASIHRRRLQRRHLQYRFSQSFLA
>NZ_CP006579.1|WP_025326591.1|1677451_1678546_+|hypothetical-protein
MNPKVAARQARLLQMLENGDEIRIGRERDCPLPLAQLTKLTEDHPDVVKVYGQGLTAEVFHLKVEGHHWCLKRCRPDSLVANVDGKTAFLTELERRREIESLRELHPTILSNVVCTSFGSARAGVLVSPWLRGEPVRRLNERNLAQMLAVEAELARWGWFDWDPSPGNLLDDGQQISVFDFGYMWPFDPLHEFNSNGLTDPAFHVPERLETRTLSGLWLEEADPLPLFRHWRELCLAWAKGELQYLSREGASAPVLARMQGLVGEWSAALASEQALAANWWRDMYRSHRLDIADDLSGKSCGPMTLRRLDWLEQAVREHFPALADNLGFDEAGLGQAALLQRLGGLREQIRANLLPTRTSQPAR
>NZ_CP006579.1|WP_025326592.1|1678682_1680035_-|lysine-sensitive-aspartokinase-3
MNPINVAKFGGTSVADAAAMNHCADVVLANPATRVVVLSASAGVTNLLVSLAQGELDEAGQDAQLDKLTGIQQAILTALGNPGEVSALIHAQLGDIRTMARQACQHTDAELADRLIACGELMSTRLFTELLHQRGIKAQWQDARQLLRTDSRFGKATVDLAATRTLCQATLGPLLGDSLVITQGFIGADADGRTTTLGRGGSDYSAALLAEALDAGSIEIWTDVPGIYTTDPRLVTRARPIPEISFVEAAEMATFGAKVLHPATLQPALRQDIPVFVGSARDPAAGGTWIRASTETSPLFRAVALRRQQVLVTLHSLNMFHAYGFLAEVFGILARHRISVDLITTSEVSVSLTLDHTGSQSNGEPILGDKVLAELGQLCKVEVETDFALVALIGNRMSEAAGVGSRVFDAIREHNIRMICYGASAHNLCFLVKESEAGNIVNRLHQELLD
>NZ_CP006579.1|WP_025326593.1|1680451_1681780_-|amino-acid-N-acetyltransferase
MREREPSLVHAFRQSTPYVNVHRGATFVLMMGGEAICHPNFANIVSDIALLQTLGIRLVLVFGSRPQNDEALARAGIEAQYHRRIRVTDDQSFAIIKQVCGGLQYDITAQLSMGLANTPMQGARISVVSGNFVTAQPLGVEDGIDYCHSGRVRRIDVEGITRQLDQHGLVLISPIGCSVTGESFNLSSEEVARRVAVDLKADKLICFSSTQGVMNRQGVAISELFPEQAEELLVELEQAGEEMSGTARYLRAAIASCRGGVPRSHLVSYQDDGAMLQELFSREGLGTQIVRESAERARAATIEDIGGILDLIRPLEEEGILVRRSREQLEMEIDKFTIIERDGLIIGCAALYCFMEEAMAEMACVAIHPEYRNSNRGDQLVAKVAERAKRLGIRRLFVLTTRSIHWFRERGFDPLEVEDLPVARQRLYNWQRRSKVLSKTIS
>NZ_CP006579.1|WP_025326594.1|1682032_1682665_+|peptide-methionine-(S)-S-oxide-reductase-MsrA
MEQIISPAEALPGRREALAIGQQHAVNGHPTQGPWPEGMELAWFGMGCFWGVERLFWQQPGVYSTAAGYQGGLTPNPTYKEVCSGLTGHAETVQVVFDPKVISYGDLLKLFWEQHDPAQGMRQGGDIGTQYRSVIFYGDETQEAIAQQSLAAYQQAMMASGDARAITTRILPLAPFYYAEDYHQQYLEKNPEGYCGLGGIGVCLPPSLNR
>NZ_CP006579.1|WP_025326595.1|1682941_1683277_-|DUF3802-family-protein
MVVESDGYIALIEYLVESLGLFESQQQGSGSQTIEDLVSNRVAGNLMAICEQNPQLDPKVRFMIMQEADAVVADLEEVLSAVWLRAPTPAQHAFLDEFIDLIKNLFDSTIG
>NZ_CP006579.1|WP_025326596.1|1683288_1683825_-|GNAT-family-N-acetyltransferase
MPQTQNTAPARIIPLREQHIPALLALFEQSVRRLGPEHYSPEQVEQWAMGARHPGLASQLREHHGWVMEQKGIPLGFVTLSDDGHLSLLYVSADHQRQGLGGLLLERALQAASQLGLHSLTTEASAFSLALFLRHGFEQAGLETVERGGVSFVRHRLYCRLPSQGQPLKYPPFPQSNE
>NZ_CP006579.1|WP_025326597.1|1683830_1684202_-|MmcQ/YjbR-family-DNA-binding-protein
MSLASLREFLLSQPGATEDTPFGPEILVYRIAGKMFALVDWQAEPLTINLKCEPELALLLREIHPEVKPGWHMNKQHWNTVTLSESLDAELWQGWIEHSYQRVVAGLPKAKRPQAPTLAAKAG
>NZ_CP006579.1|WP_025326598.1|1684311_1685103_+|alpha/beta-hydrolase
MLYHKTFELGPDRDWVVFVHGAGGSSSIWFKQLRAYREHFNVLLLDLRGHGQSNQLQQVVKGHYSFRAVTEDILRLLDHLRIPRAHFVGISLGTILIRHLAELCPERVKSMVLGGAILRLDIRSRVLVQLGRVGQHILPYMWLYRLFAFIIMPRQHHQESRNLFVREARKLCQKEFKRWFRLATEVNPLMRYFKERALPIPTLYLMGEEDHMFIAPVREQVARDPYSQLEIIENCGHVCNVEQPEHFNRQSLEFISTQACVRA
>NZ_CP006579.1|WP_148297614.1|1685429_1686824_-|hypothetical-protein
MSFLKDLITSLYNHVDTRINNPILGTFSAIFFIVNWHQFTILIFGSDKIESRVEQFKLFIDSISLKQISCIAFLTLLYLLILPLINHAIGFIQGLIEHKRYTSNISQEVKNESERGRLINSRYKAEHQNEIAAQEIFEEIALSNERIEQQKILTERLSDSYKSAKSIIQSMYEKSQIIKAELDRALLEKETLSKKLSKENFIKERERLSYEKLKLQVEEKRKISQLTLSFYLINELHLSLVAHSIKISFSGLSSIISSLFGYTSFSKLIEDENFDSESLDSVKYIIYSESLISQITSILENEELSGSVDSYTVFESLEVIFNSKFEIKILTEEETGEKIQETLEEGNELYDLTNYDDVSSSMAETNAFFDSVENLQVVTSSLEDNYFDVEFECVLTGTTHEDKPFCGDKINISFISRSEVILGKNALGDSTIEEVNSSVKDYYEDDDYSEHSAEDSLIQQEFEF
>NZ_CP006579.1|WP_025326599.1|1687128_1688196_-|carotenoid-1,2-hydratase
MKLSWKWPLMIVCILHGAAAGASDLGTLLGGGSDQFRKALPGQPIRLPADHGAHPDYRSEWWYLTGNLKDEQGRDYGIQWTLFRQGIEQQITSDNPWLSPQLWLAQFAITDLARGTHRQDERTSRQGPGLAGASGGEYWLREWRLASEGKSLFPATLKVQSKMGELNLKVSAAKPVVLQGNAGYSEKSPGNASFYYSFPRLNLSGTLTLDGETRNVTGQGWFDHEWSSSVLAQWQSGWDWFSLQLADGRELMLFRLRTKEGRPEPENRYGILIERDGSSRVLAPESIVLTPGKTWRGPKGQPYPIEWQLKAADLNLVIKARQPNQAMTGRFDYWEGAVSVSGDASGVGYLEMTGY

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Crispr_ID: NZ_CP006579_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006579_15

1923755-1923892

Orphan

Consensus_repeat	Method
TTGCCATTGTTGTCATCCCCCTCGAGCAGCTGGTATTTGCACAGCATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006579_15

>merge|NZ_CP006579|15|1923755-1923892|CRISPRCasFinder
TTGCCATTGTTGTCATCCCCCTCGAGCAGCTGGTATTTGCACAGCATGCTTCGGAACGGGTGGTGGCAGAGGGTCAGTCGTTGTCCATGTTGCCATTGTTGTCATCCCCCTCGAGCAGCTGGTATTTGCGCAGCATGC

>NZ_CP006579|15|15|1923755-1923892|CRISPRCasFinder
TTGCCATTGTTGTCATCCCCCTCGAGCAGCTGGTATTTGCACAGCATGC	TTCGGAACGGGTGGTGGCAGAGGGTCAGTCGTTGTCCATG
TTGCCATTGTTGTCATCCCCCTCGAGCAGCTGGTATTTGCGCAGCATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006579.1\|WP_025326772.1\|1917496_1918282_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226637
NZ_CP006579.1\|WP_025326769.1\|1913735_1915190_-\|PTS-cellobiose/arbutin/salicin-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|182081
NZ_CP006579.1\|WP_025326780.1\|1926075_1926480_+\|envelope-stress-response-membrane-protein-PspC	unknown	unknown	gnl\|CDD\|132023
NZ_CP006579.1\|WP_025326771.1\|1916592_1917351_+\|tRNA-hydroxylase	unknown	unknown	gnl\|CDD\|114868
NZ_CP006579.1\|WP_148297616.1\|1918278_1918467_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025326776.1\|1921970_1923566_-\|peptide-ABC-transporter-substrate-binding-protein-SapA	unknown	unknown	gnl\|CDD\|173858
NZ_CP006579.1\|WP_025326768.1\|1912273_1913704_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|182112
NZ_CP006579.1\|WP_025326770.1\|1915444_1916455_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380494
NZ_CP006579.1\|WP_193353995.1\|1932303_1932852_+\|YfiR-family-protein	unknown	unknown	gnl\|CDD\|379335
NZ_CP006579.1\|WP_025326782.1\|1927993_1929025_+\|TIGR01620-family-protein	unknown	unknown	gnl\|CDD\|235449
NZ_CP006579.1\|WP_025326784.1\|1930081_1930420_+\|4a-hydroxytetrahydrobiopterin-dehydratase	unknown	unknown	gnl\|CDD\|234845
NZ_CP006579.1\|WP_025326779.1\|1925744_1925981_+\|envelope-stress-response-membrane-protein-PspB	unknown	unknown	gnl\|CDD\|236526
NZ_CP006579.1\|WP_025326778.1\|1925066_1925741_+\|phage-shock-protein-PspA	unknown	unknown	gnl\|CDD\|274372
NZ_CP006579.1\|WP_025326783.1\|1929246_1930041_+\|phenylalanine-4-monooxygenase	unknown	unknown	gnl\|CDD\|237020
NZ_CP006579.1\|WP_005325353.1\|1918517_1919516_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226639
NZ_CP006579.1\|WP_025326787.1\|1932848_1934090_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|182171
NZ_CP006579.1\|WP_025326775.1\|1920934_1921894_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|185065
NZ_CP006579.1\|WP_025326781.1\|1926556_1927963_+\|YcjX-family-protein	unknown	unknown	gnl\|CDD\|367902
NZ_CP006579.1\|WP_025326785.1\|1930560_1932108_+\|transcriptional-regulator-TyrR	unknown	unknown	gnl\|CDD\|236769
NZ_CP006579.1\|WP_025326774.1\|1919726_1920620_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226640

Protein	Function_ID	Function_description	E-value
NZ_CP006579.1\|WP_025326772.1\|1917496_1918282_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226637	COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	1.56149e-131
NZ_CP006579.1\|WP_025326769.1\|1913735_1915190_-\|PTS-cellobiose/arbutin/salicin-transporter-subunit-IIBC	gnl\|CDD\|182081	PRK09796, PRK09796, PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional.	0
NZ_CP006579.1\|WP_025326780.1\|1926075_1926480_+\|envelope-stress-response-membrane-protein-PspC	gnl\|CDD\|132023	TIGR02978, Phage_shock_protein_C., phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects. [Cellular processes, Adaptations to atypical conditions].	1.0593e-56
NZ_CP006579.1\|WP_025326771.1\|1916592_1917351_+\|tRNA-hydroxylase	gnl\|CDD\|114868	pfam06175, MiaE, tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE). This family consists of several bacterial tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.	3.21182e-91
NZ_CP006579.1\|WP_025326776.1\|1921970_1923566_-\|peptide-ABC-transporter-substrate-binding-protein-SapA	gnl\|CDD\|173858	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP006579.1\|WP_025326768.1\|1912273_1913704_-\|6-phospho-beta-glucosidase	gnl\|CDD\|182112	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional.	0
NZ_CP006579.1\|WP_025326770.1\|1915444_1916455_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380494	cd06270, PBP1_GalS-like, ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type 1 periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar binding of ABC-type transport systems.	4.80516e-108
NZ_CP006579.1\|WP_193353995.1\|1932303_1932852_+\|YfiR-family-protein	gnl\|CDD\|379335	pfam13689, DUF4154, Domain of unknown function (DUF4154). This family of proteins is found in bacteria. Proteins in this family are typically between 172 and 207 amino acids in length. Many members are annotated as valyl-tRNA synthetase but this could not be confirmed.	1.17959e-37
NZ_CP006579.1\|WP_025326782.1\|1927993_1929025_+\|TIGR01620-family-protein	gnl\|CDD\|235449	PRK05415, PRK05415, hypothetical protein; Provisional.	2.68989e-115
NZ_CP006579.1\|WP_025326784.1\|1930081_1930420_+\|4a-hydroxytetrahydrobiopterin-dehydratase	gnl\|CDD\|234845	PRK00823, phhB, pterin-4-alpha-carbinolamine dehydratase; Validated.	1.78078e-45
NZ_CP006579.1\|WP_025326779.1\|1925744_1925981_+\|envelope-stress-response-membrane-protein-PspB	gnl\|CDD\|236526	PRK09458, pspB, envelope stress response membrane protein PspB.	2.57993e-37
NZ_CP006579.1\|WP_025326778.1\|1925066_1925741_+\|phage-shock-protein-PspA	gnl\|CDD\|274372	TIGR02977, phage_shock_protein_A, phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects. [Cellular processes, Adaptations to atypical conditions].	6.20291e-86
NZ_CP006579.1\|WP_025326783.1\|1929246_1930041_+\|phenylalanine-4-monooxygenase	gnl\|CDD\|237020	PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed.	3.36534e-147
NZ_CP006579.1\|WP_005325353.1\|1918517_1919516_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226639	COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	0
NZ_CP006579.1\|WP_025326787.1\|1932848_1934090_+\|diguanylate-cyclase	gnl\|CDD\|182171	PRK09966, PRK09966, diguanylate cyclase DgcN.	1.85163e-75
NZ_CP006579.1\|WP_025326775.1\|1920934_1921894_-\|ABC-transporter-permease-subunit	gnl\|CDD\|185065	PRK15110, PRK15110, peptide ABC transporter permease SapB.	1.34853e-111
NZ_CP006579.1\|WP_025326781.1\|1926556_1927963_+\|YcjX-family-protein	gnl\|CDD\|367902	pfam04317, DUF463, YcjX-like family, DUF463. These proteins possess a P-loop motif.	0
NZ_CP006579.1\|WP_025326785.1\|1930560_1932108_+\|transcriptional-regulator-TyrR	gnl\|CDD\|236769	PRK10820, PRK10820, transcriptional regulator TyrR.	0
NZ_CP006579.1\|WP_025326774.1\|1919726_1920620_-\|ABC-transporter-permease-subunit	gnl\|CDD\|226640	COG4171, SapC, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	1.08066e-122

>NZ_CP006579.1|WP_025326776.1|1921970_1923566_-|peptide-ABC-transporter-substrate-binding-protein-SapA
MLTPLLLGLLVLVTGCQKQDDASRTGLIYCADGAPRSFNPQLANSEATLDASARPLYDRLLEVNANTLSIEGGLATHWRSSEDGLSYTLTLRKGVTFHRTPWFNPTRHFNADDVLFTYHRLLDEHHPFHSISGGEYPYFHSLGLSSLIKRVYKKGPHEVVFELNRPDASFLATLASDYAIVLSAEYGEQMIKAGTPELLDSRPIGTGPFSFKEYRHNEFVRYLRHPGYWGGEAKIEQLIYDITPKSSKRLAKLLTGECDVMSTPSASQLSVIDRDAHLNLSVQSGMNVAFLALNTRKAPFNKVQVRQALASAINVQNLLQAVYFETGQPAASLLPPLSWGYNPSLTQRKPDLRLARQLLRDAGYPQGFEMQVLVQPGARPYNPDGLKTAQLMRSDLAKIGVKLKIVQQAWPVIETRLAHGQYDSLLSGWIADNADPDNFFRQLLSCAAVERGNNYSRWCSPAFDQLLDDAVTTPQLAFRLRNYYYAQSLLNEQLPLIPLAHALRTQVSRSDIQGLTLMPFGGTTFNQAYRE
>NZ_CP006579.1|WP_025326775.1|1920934_1921894_-|ABC-transporter-permease-subunit
MFFYILRRITLLLITLLVLTMGAYLLEFRLIGQVLDFWHGYPDFLQRIAAGDFGLSSVSGLPVLDEIRHYFPATLTLCLAAFAISLLVGIPLGTLAALYQGRGLDLSIMAAGLIGYAVPVFWLALLMVMFFSLDLGWLPSSGQISLLYDVPSITGIAIVDVLMSQEPWREAALHDALRHLVLPSLVLAVVPTTEVIRHVRSSLIDVMKQNFIKAAASRGLSRRQIVWRHGLKNALPPVLPLLGLQLGSVLTSAMITEVVFDWPGIGRWLVSSIALQDYAAIRGAFLVVASFVIFISVSTELLTTIMYPARRKELYAKQD
>NZ_CP006579.1|WP_025326774.1|1919726_1920620_-|ABC-transporter-permease-subunit
MHDKSNIYPELKILSPLEQTWVSYRRNPLAMGGLWCFGLLLLITLVGPLVVPYGIDDQHSGRLLLAPSWASTGNIDYFLGTDDLGRDILSRLVVGARLTFGNALLVVVIALLVGSAIGILGGMSKGVKSSVLHHLLDTLLSIPSLLLAIIVVAILGPGLFNTLIAITLALIPPFIRATYNAVHAEMQKEYIIASRLDGSPPLRIMRLAILPNIVETLVTQTTRTLSAAILDISAVGFLGLGAQSPQPEWGAMLADSSDLIYLAPWTVTLPGMAILFSVLVTNLVGEGIREALKEGND
>NZ_CP006579.1|WP_005325353.1|1918517_1919516_-|ATP-binding-cassette-domain-containing-protein
MPLLDIRNLTIEIDTPQGKVKAVDRVSLTLNEGEIRGLVGESGSGKSLVAKVIVGIQKDNWTVRADRMRFNDMDLLTMAPKERRRIMGREIAMIFQDPISCLDPSEEIGTQLEEAIPTSAFAGKFWQRFQWRKKRAIALLHRVGVKDHRKVMRAYPHELSDGMCQKVMIAMAIANQPRLLVADEPTSAMESTTHSQILRLLDKMNKLGNTTILIISNDIAAIANLTDTINIMYCGQMVEVGTRDQILESPRHPYTDALLKSIPDFDKLVRHKSRLETLPGVIPPLQHLPIGCRLGPRCPYAQKQCVQTPLMSKVKGHQFSCHFPLNMEEPKK
>NZ_CP006579.1|WP_148297616.1|1918278_1918467_-|hypothetical-protein
MPQLPLPAEHGKIEEMSPSHHHSMPNQQGQGTSISQLPLPAEHGKIEEMSLTVNTAIKEPSL
>NZ_CP006579.1|WP_025326772.1|1917496_1918282_-|ABC-transporter-ATP-binding-protein
MIEPALLQVRGLCKTYQNRTGLFRRQAVEAIKPLSFDLGVGQTLAIVGEAGSGKSTLARILAGMIEPSGGEIAIEGQPLVHGDYQTRCKLLRMIFQDPNTSLNRKIRVGQILETPLRLNTEMTEEERREKVNQTLRMVGMLADHALFYPQMLSAGQQQRVGLARALILNPKIVVADEALSTLDISVRSQIINLLLEMQETMGLSYVLVANDLGIVSHISDEVLVMHEGRVVERGKTLRVFADPQHDVTRRLIQNYNNEYRR
>NZ_CP006579.1|WP_025326771.1|1916592_1917351_+|tRNA-hydroxylase
MDDLLAPVCQFLHCETPDEWVEMARDPAQLPTLLIDHANCENKAALTAHSLVRRYCLPKEKRHLLPKLEFYRELDAIPEKAEILGKRTMGESDRSVFAELERNPLLFPMVRLIQEELHHFEQVLEIMQARGIPYGPVTASRYARSLLAHVRTYEPAAVVDKMIIGAYIEARSCERFAKIAPHLDEELGRFYVSLLRSEARHYQDYLALAEQYAGEDISERVAYFGRIEAELICSPDPQFRFHSGLPVRSDSC
>NZ_CP006579.1|WP_025326770.1|1915444_1916455_+|LacI-family-DNA-binding-transcriptional-regulator
MTTMLEVAKRAGVSKATVSRVLSGNGYTSQETRDRVFQAIEESGYRPNLLARQLATKNTQTLGLVVTNTLYHGVYFSELLSHAARLTEDRGRQLILADGKHSAEEERQAIQYLFDSRCDGVIIYPRFLSVEEMDEIIEQHSQPIMVLNRRLRRHPAHCVYSDQQAAAAAVVDRLVGMGHRDIAFITGSADSPTGMERLAGYKQALVRHEIPLRDELIAQGKWTPACGAAGVSILLARGVSFSALIASNDDMAIGAIKQLHESGLSVPEQVSVVGFDDIALAPYVIPSLASVKMPVTEMIQETISRLITMVEEGEPEALPSFSGKLVRRDSLKRLLE
>NZ_CP006579.1|WP_025326769.1|1913735_1915190_-|PTS-cellobiose/arbutin/salicin-transporter-subunit-IIBC
MSKNYAALAGKVITALGGTGNIVAVTHCMTRLRFVLQDPTLVDSPTLKATAGVLGVVSSDNQCQVIIGNMVSHAYREVLAQLPEGAQGDVPAAKPGFSLRRMGAAILDALIGTMSPLIPAIIGGSMLKLLAMVLEMTGVLEKGSSTLTILTVAGDGAFFFLPLMVAASAAVKFKTNMSLAIAIAGVLVHPSFIELMARAAAGEQVTFALIPVTAVKYTYTVIPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGTAISGLVYTVHDYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTIAETGKEGMVMPSEIGANLSLGGSSLAVAWRTKNPELRQTALAAAASAIMAGISEPALYGVALRLKRPLIASLISGFICGAVAGMAGLASHSMAAPGLFTSVQFFDPANPMSIAWVFAVMALSVVLSFVLTLVMGFEDIPVEVPGESAAPQPVAASQAQATAGA
>NZ_CP006579.1|WP_025326768.1|1912273_1913704_-|6-phospho-beta-glucosidase
MSITRFPKGFLWGGALAANQAEGGHREGGKGLTTVDMIPHGANRMAVKLGQEKRFTLRDDEFYPSHEAIDFYHRYKEDIALMAEMGFTVFRTSIAWSRLYPKGDEAEPNPEGIAFYRALFEECRKYNIEPLVTLCHFDVPMHLVVEYGSWRNRQMVTFFTRYARTCFEQFDGLVKYWLTFNEINILLHSPFSGAGLVFEEGEEREQVKYQAAHHELVASALATQIAHEVNPANQVGCMLAGGSFYPYSCKPEDVWAALQKERENLLFIDVQARGAYPAYAASLFREKGIQLVKAPEDDDILKHSVDFVSFSYYASRCASADMNAGNTSAANVVKSLRNPHIEVSQWGWGIDPLGLRITMNSLYDRYQKPLFLVENGLGAIDEINADGEIEDDYRIDYLRAHISAMGDAIADGVPLLGYTSWGCIDLVSASTGEMSKRYGFVYVDRDDAGRGTLARRRKKSFWWYQKVIASNGEDLA
>NZ_CP006579.1|WP_025326778.1|1925066_1925741_+|phage-shock-protein-PspA
MSIFSRLADIINSNLTSLLDKAEDPQKMVRLIIQEMEDELVKERSNLARFLANQKEIGRQVSRHQERVSEWQAKAELALAKGREDLARAALIEKNKQTELAEALYREQQAVDSGIDKLGDEIRQLEAKLEDARARQKAMAIRSEAASSRLNVQSQVARGDSQAVVSKFERMERRIDEMEARADLGQSDKALAQQFAELEADDQISRELEAMRQKLGQSDSKQGE
>NZ_CP006579.1|WP_025326779.1|1925744_1925981_+|envelope-stress-response-membrane-protein-PspB
MEDLLGVLMVPMVVFMVVVAPIWLVLHYRAKGRIGAGLADSEREQLQGLLARAEKMQERVGALESILDAEVPGWRNKV
>NZ_CP006579.1|WP_025326780.1|1926075_1926480_+|envelope-stress-response-membrane-protein-PspC
MTQQSKEGRNLYRDPQRGKIAGVCAGLADYFGVETWIVRLLAITGLIFAGFITFTAYIAAWFLLDKKPVTLYGEQEADFAEVRMKARSWQAGVTPHQALGRIAQELDTLEPRLQRIEKLVTSKEFTLQREFSKL
>NZ_CP006579.1|WP_025326781.1|1926556_1927963_+|YcjX-family-protein
MIRNKLEQSWSVLQHKAFEVVNRARDRHIRLAVTGLSRSGKTAFITALVNQLEHAAIDGRLPLWDAQRQGRILGARRVPQQNAHIPTFPYERGLDALFGEPPAWPAPTRGVAEVRLEIRYRTRHPVRRHLGEISTLYVDLVDYPGEWLLDLPLLDLSYEQWSEQVANQLRRPELQALAADWLTPGWQAEQVFEERPACELAQRYTDYLHTCKRELGLHLIQPGRFVLPGEYAGAPLLQFVPWVWDKPAQEPADGSLYATFKQRFEQYKQHLVQGFYEQHFAGFDRQIVLVDCLAPLNAGAASFGDMQQAIARIMESFAYGKSNWWRRLFSPRIDKLLFVASKADHVTPEQHGPLVSLLQHLVSSGRGQARFEGIETECLALAAIKATEVGKGQANGREFPAIRGTSLAGESLLLFPGEVPPQIPPAQWWQSQGFDFQAFRPMPMSAHQALPHIRLDAALEFLLGDHLE
>NZ_CP006579.1|WP_025326782.1|1927993_1929025_+|TIGR01620-family-protein
MNDQTTQKVPLQGKVILEPTLTVASEVPPPAPAQRLEEESFERLEELDAFTEVAPALTVRPRRRHRLLGWGLGAVGLLSLGQFGAFLYDQFLTTPLWGGAWLLASGLVAVGTAGVVGREWLRLRTLKRRQDVRSRAEDLLAHQGVGQGQAFCEALAEKSGDKGREGYRTWLGQLDESHSDREVLTLYSQLVLGERDKLAQARVAKWSGEAAVLVALSPLATVDMMLMLWRNLRMIEDIADVYAIELGYWSRIRLIRQVFRNMLYAGATELVTEVGMDLLGAELTAKLSARAAQGVGAGLLTARLGLRTIEACRPLPWCKDEKPRLGELRKRLVGQLAGYLRTS
>NZ_CP006579.1|WP_025326783.1|1929246_1930041_+|phenylalanine-4-monooxygenase
MASRYTAHQPDDQGIIHYSEEEQGTWQILIARQLAALDGKACDAYRAGLERLALPRDRIPQLGEINAALTPTTGWSVAAVPALISFDRFFALLADRQFPVATFIRRRDELDYLQEPDIFHEIFGHCAMLTNPAFAHFTHLYGQLGLNASKEERVYLARLYWFTVEFGLVQEGEGLRIYGGGILSSIGETAYALSGKPVLQPFDLLEVLRTPYRIDIMQPVYFVLPSLDCLYRLGPQEIMAAVAEARRLGLRPPRFAPAPGRQAS
>NZ_CP006579.1|WP_025326784.1|1930081_1930420_+|4a-hydroxytetrahydrobiopterin-dehydratase
MSELANQRCEACRADAPRVTEQELSELMHAIPDWQPLVVNGELQLRREFVFRNFKEALAFTNRLGELAEAEFHHPAILTEWGKVTVSWWTHKIGGLHRNDFIMAARTDELMK
>NZ_CP006579.1|WP_025326785.1|1930560_1932108_+|transcriptional-regulator-TyrR
MRLEVSCEDRLGLTRELLDRLVEHNIDLRGIEIDTSGIIYLNFPELEFRDFQHLMPEIRRIPGVYDVKTIPYMPSEREHHEIEALLKALPDLVFSLDSKGRVTQANQAALTTLALPPEEVRGLALASLVKGFSFARWLEASEIKPQTCKLSLGGEEYLGDLMPLFVAEEKGKQALAGAVVVLKSARRVGMHFSALHAVEVGGFEHLQAESQKMKEVLAQAAKLAMQDAPLLIVGETGTGKELLARACHGASLRSSHPFMALNCAAMPDNVAESELFGYAPGAFGNNTEGKRGVLELASGGTLMLDEIGDMSPHLQTKFLRVLQDGVFRRVGDEQEVRVNVRFICTTQKQLLDLVHEGKFREDLYYRLNVLSLALPPLRERKADIMALAQQFVSRFASELQRPRPRFTRNMAEYLTAYRWPGNVRQLRNCLYRAMTLLEGDEIGPEHVDLPVAADAMPLIDEWFEGGLDEAVKRFESRLLERLYPAFPSTRQLAKRLGVSHTAIANKLREYGIGKK
>NZ_CP006579.1|WP_193353995.1|1932303_1932852_+|YfiR-family-protein
MQFFSSFRILAWLTPLCCLWGLACEAAPATSAEVRSELVRQTVLDILSYTRWPSEPAKLRLCVAAPTEYAASLLTISQQANGRPVDVHRYEVDDEALIQRCDVIYLGVLTPEQRLSLFERLRGYAILSISEQSRECIADAVFCLQAGKERIRFRVNLDALARSGVRVHPAVLKLARADEEAR
>NZ_CP006579.1|WP_025326787.1|1932848_1934090_+|diguanylate-cyclase
MTINHASPRLTLRQSLGRTHMMISLTAVCMAGLFLTITALLALRLYADHNLKLVARAISYTAEAAVVFDDQDAAKDALEAITSREDVASASILLPGGRVLASWRRDITTPWTTLEQHLARQILPGPVELPMVRENKEIARVHLVGHGQYLLRFLLQTLMATLLCLLLSILGALYVARRMQRSITAPLKALTEVAYSVSRQRALKQRVPAANIAELHELGVDFNSLLDELEAWQAHQKRENATLLHQATHDPLTGLPNRALFEARLEQAIQAGRTRQERFALLYLDCDRFKQINDNLGHAIGDEVLIALARRVQHQLRPMDLVCRLGGDEFVVLLSPVHQGSEVQEVMMRIQQAMTPPVVLSDGRHLGIGVSLGSALYPEQGETADALLQAADGAMYESKRQRREGAEDHKTTA

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Crispr_ID: NZ_CP006579_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006579_16

2142753-2142882

Orphan

Consensus_repeat	Method
GCGGCGGCCAAGACTAGGCCCGTGCGGCGCACTCGCGCTCGAGGGC	CRISPRCasFinder

1 spacers

DinG

The CRISPR arrays of NZ_CP006579_16

>merge|NZ_CP006579|16|2142753-2142882|CRISPRCasFinder
GCGGCGGCCAAGACTAGGCCCGTGCGGCGCACTCGCGCTCGAGGGCGGCGCGGATCTCGTCTGCGGTCTTTAGGGCGCCGCGGGGCGGCGGCCAAGACTAGGCCCGTGCGGTGCACTCGCGCTCGAGGGC

>NZ_CP006579|16|16|2142753-2142882|CRISPRCasFinder
GCGGCGGCCAAGACTAGGCCCGTGCGGCGCACTCGCGCTCGAGGGC	GGCGCGGATCTCGTCTGCGGTCTTTAGGGCGCCGCGGG
GCGGCGGCCAAGACTAGGCCCGTGCGGTGCACTCGCGCTCGAGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006579.1\|WP_025326948.1\|2148691_2149318_-\|hydrolase	unknown	unknown	gnl\|CDD\|238494
NZ_CP006579.1\|WP_080675323.1\|2137338_2139015_+\|long-chain-fatty-acid--CoA-ligase-FadD	unknown	unknown	gnl\|CDD\|236359
NZ_CP006579.1\|WP_025326941.1\|2140390_2140759_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274340
NZ_CP006579.1\|WP_025326935.1\|2132950_2134861_+\|ATP-dependent-DNA-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|224120
NZ_CP006579.1\|WP_025326946.1\|2144481_2145027_+\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
NZ_CP006579.1\|WP_025326943.1\|2141881_2142709_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP006579.1\|WP_025326950.1\|2150518_2151409_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP006579.1\|WP_025326940.1\|2139115_2140228_+\|ribonuclease-D	unknown	unknown	gnl\|CDD\|236771
NZ_CP006579.1\|WP_025326951.1\|2151495_2152818_-\|YjiH-family-protein	unknown	unknown	gnl\|CDD\|225851
NZ_CP006579.1\|WP_025326942.1\|2140840_2141806_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP006579.1\|WP_025326936.1\|2135012_2135714_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
NZ_CP006579.1\|WP_025326953.1\|2154430_2154853_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341392
NZ_CP006579.1\|WP_025326949.1\|2149554_2150421_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP006579.1\|WP_011706069.1\|2147862_2148192_+\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_CP006579.1\|WP_025326952.1\|2153277_2154348_+\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225360
NZ_CP006579.1\|WP_025326945.1\|2143971_2144349_+\|YbaN-family-protein	unknown	unknown	gnl\|CDD\|377291
NZ_CP006579.1\|WP_025326934.1\|2132638_2132884_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_041204263.1\|2136299_2137142_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_CP006579.1\|WP_025326937.1\|2135781_2136300_+\|Slp-family-lipoprotein	unknown	unknown	gnl\|CDD\|377144
NZ_CP006579.1\|WP_025326947.1\|2145198_2147733_+\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|236138

Protein	Function_ID	Function_description	E-value
NZ_CP006579.1\|WP_025326948.1\|2148691_2149318_-\|hydrolase	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	4.31996e-70
NZ_CP006579.1\|WP_080675323.1\|2137338_2139015_+\|long-chain-fatty-acid--CoA-ligase-FadD	gnl\|CDD\|236359	PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase FadD.	0
NZ_CP006579.1\|WP_025326941.1\|2140390_2140759_-\|hypothetical-protein	gnl\|CDD\|274340	TIGR02890, conserved_hypothetical_protein, regulatory protein, yteA family. Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to Pfam family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. Smaller proteins from the proteobacteria with just the N-terminal domain, including DksA and DksA2 are RNA polymerase-binding regulatory proteins even if the Zn-binding site is not conserved. [Unknown function, General].	0.000852363
NZ_CP006579.1\|WP_025326935.1\|2132950_2134861_+\|ATP-dependent-DNA-helicase	gnl\|CDD\|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	1.71677e-172
NZ_CP006579.1\|WP_025326943.1\|2141881_2142709_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	7.21754e-25
NZ_CP006579.1\|WP_025326950.1\|2150518_2151409_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.61551e-66
NZ_CP006579.1\|WP_041204263.1\|2136299_2137142_+\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	7.19477e-23
NZ_CP006579.1\|WP_025326940.1\|2139115_2140228_+\|ribonuclease-D	gnl\|CDD\|236771	PRK10829, PRK10829, ribonuclease D; Provisional.	9.388e-128
NZ_CP006579.1\|WP_025326951.1\|2151495_2152818_-\|YjiH-family-protein	gnl\|CDD\|225851	COG3314, COG3314, Uncharacterized protein conserved in bacteria [Function unknown].	1.76012e-99
NZ_CP006579.1\|WP_025326942.1\|2140840_2141806_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.69245e-12
NZ_CP006579.1\|WP_025326936.1\|2135012_2135714_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	1.1025e-75
NZ_CP006579.1\|WP_025326953.1\|2154430_2154853_+\|CBS-domain-containing-protein	gnl\|CDD\|341392	cd04629, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.79664e-59
NZ_CP006579.1\|WP_025326949.1\|2149554_2150421_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.81094e-78
NZ_CP006579.1\|WP_011706069.1\|2147862_2148192_+\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	8.29193e-43
NZ_CP006579.1\|WP_025326952.1\|2153277_2154348_+\|LuxR-family-transcriptional-regulator	gnl\|CDD\|225360	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription].	1.86308e-09
NZ_CP006579.1\|WP_025326945.1\|2143971_2144349_+\|YbaN-family-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	1.96819e-43
NZ_CP006579.1\|WP_025326937.1\|2135781_2136300_+\|Slp-family-lipoprotein	gnl\|CDD\|377144	pfam03843, Slp, Outer membrane lipoprotein Slp family.	2.71208e-53
NZ_CP006579.1\|WP_025326946.1\|2144481_2145027_+\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	1.30853e-94
NZ_CP006579.1\|WP_025326947.1\|2145198_2147733_+\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|236138	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated.	0

>NZ_CP006579.1|WP_025326943.1|2141881_2142709_-|AraC-family-transcriptional-regulator
MQGVPVNFTHQHDRADFRALPGQPATELYRAHIQHHIFDPHSHEGFGLGVIECGAERFRYRGSQLLAGPGSLVLMNPDELHTGEAACEQGWRYRMLYLPADRLEAISGERGWYFAEAVRSDPRTAPVLQAALDALWHCDSELAADGLLLSVCETLRPHARALAAPREAAHPLGRAIDFMQAYFARPITLTELAGAVNLSPYHFQRSFKARFHVTPQQMLMAIRLQRAKGWLAAGLPAAEVAAACGLADQSHLNRAFLRRYGTTPVRYQKQVQAGR
>NZ_CP006579.1|WP_025326942.1|2140840_2141806_-|DMT-family-transporter
MLIGVLFALLAGLMWGLIFVAPLLVDGYPPALLASGRYLAFGLIVLPLAWQARKRLAALSASDWCEALALTLVGNLIYYFCLSGAILRIGSPLAAMIIGTLPVVTALAANRLYGARDGRLSRARLYPALLLMGIGLYLVNRTELTWQAEARTGQLFGFILAVVAVLCWTWYPLRNARWLREHPDRSPAVWATAQGLVTLPVALIAYLGSLGHLALSAPDFPLPFGPTPLRFVLLMGVVGLFCSWLGTLCWNEASQRLPTVLVGPLIVFETLAGLLYAFMLRGIMPPMSTLVGVVCLVVGVLYVITGKPRHQPEKRVKARLT
>NZ_CP006579.1|WP_025326941.1|2140390_2140759_-|hypothetical-protein
MTQARLAEWHQRLLTDWAQTREELIRQLKACRQDDWAQRVASCERDQLVDLTSRLDLPKVEQSVARLKRLDAALCQMDLGLYGFCSDCEEPLLAEQLEQDPTLQRCPRCEARYRKGFHAHEL
>NZ_CP006579.1|WP_025326940.1|2139115_2140228_+|ribonuclease-D
MQYQLISQQAELEQYLASLADVPLAIDTEFVRTRTYYPQLGLFQIYDGERLALLDPLTLDLSGLWQRLGRAGQIAILHASGEDLELIQHQAGHLPNQMHDTQLATAFLGYGVSVGFGALVKEFLGVELEKDQARTDWLARPLTARQLEYAAADVFYLMPLYEKVMARLHESGKFAWFEQECQNHSARKTQGSDPRQAYLEIINAWQLGRRELAILRELAAWRQQEAVRRDLALNFVVKELHLFKVAERRPTSLRDLNELGLAPIEIKIHGKRMLDIVAAAQQSDPEGWPEPIRRLVDYPQYKAELKRIKAMVEEKAKASNIPPELVASKKIIHQYFTWSWRMSAEERARADKPMLLQGWRHELVGHLLAQ
>NZ_CP006579.1|WP_080675323.1|2137338_2139015_+|long-chain-fatty-acid--CoA-ligase-FadD
MERVWLKRYPEGVPAEINPDQYGSLVEMFEESVTQFADQPAFVNMGQTITYRRLEEQSRAFAAYLQNELKLGKGDRVAVMMPNLLQYPIAVFGILRAGMTVVNVNPLYTPRELEHQLKDSGAKAIVIVSNFAHTLEKVVHDTPVKHVILTRMGDNLGLAKGSLVNFVVKYVKKLVPKYNLPHASTMRQALAKGRYLQYIKPEINNQDIAFLQYTGGTTGLSKGAMLTHRNMIANVEQCLGVYGPVLERGKEFVVTALPLYHVFALTVNCLLFMRLGGYNLLISNPRDIPGFVKEIKKYPFTCITGVNTLFNALVNNGEFQSMDFSRLKLTIGGGMAVQRAVAEQWKALTQTPLLEGYGLTECSPLVSVCPYDLVDYNGSIGLPVCSTEIRLVDDKGQVITEQGAPGEMQVRGPQVMTGYWQRPEATAEVMQDGWLCTGDIAVCDEQGFFKIVDRKKDMILVSGFNVYPNEIEDVVALHPKVLEVAAVGVPNPVSGELVKIFVVKKDAKLAEDEIIAHCRKHLTAYKVPKLVEFRDELPKTNVGKILRRVLRDEEIAKQ
>NZ_CP006579.1|WP_041204263.1|2136299_2137142_+|alpha/beta-hydrolase
MMEERFLTLADGRRIALLDNGRQGKPLVIALHGWLDNGASFLPLAPHLAECHLVCVDLPGHGHSDHKATPYVFVDWLDDLHQIAQAAGWQRFVLLGHSLGALIASAYAGVFPEQIVRLILLEGLGPLSQPDEEVPAQLRRAILNRSRTRERASGGFASLDEAVTARCKVADISPAAARLICERQLEAREGRLHWRSDSRLRDLSPIRMSEGQAQALIRAIACPVLFIRGEQGFPALIQQWQQRADVFRQIEMAVVEGNHHFHMDNSSKTAVYIENFCQIR
>NZ_CP006579.1|WP_025326937.1|2135781_2136300_+|Slp-family-lipoprotein
MMKRVIMLGLTGLLLVGCSSVPKELAYEPENQLVAYQPALQGMEGKPARWSGVISAVHNEQDQSVIEVVYLPLKANGVPTQTEQSPGRFLAVMKGFVDPTLYAKGRSLTVLGILDKPVDSQIGDHKYRFSVLKVTASKLWPPVKEVEIRYMDPYFYDPFYDPFWPRRHYSRW
>NZ_CP006579.1|WP_025326936.1|2135012_2135714_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MTELKILAVDTATEACSAALMVGDKLFSRWEEAPRDHTQKILPMVQAVLDEAGLSLTELDAIAFGRGPGSFTGVRIGISVAQGLAFGAGVPLIGISTLAAMAQGAHRLEGAERVLTAIDARMNEVYFGHYELLDGRMQLVGEEVVSDPAALIEARGKLAGSLSCVGTGFETYGETLNALADELAVSQVRFPAAVDMLPLARNAWLAGEAVAVEQATPVYLRDKVTWKKLPGRE
>NZ_CP006579.1|WP_025326935.1|2132950_2134861_+|ATP-dependent-DNA-helicase
MTIQTLFKPDGPLASHIEGFKARAPQLEMAEAVARAIKSGGRLLVEAGTGTGKTYAYLVPALESGKRVVISTGSKNLQEQLFYRDLPTITGALSYTPPVALLKGRSNYLCIERMNRLLSESHLQKPEILSDLVKVKSWSTATDNGDVGDIPGLQENAEILAHVTSTNDNCLGRDCPYYDDCHLVVARRRAMDAQVVVINHHLFFADMAVKDTGFGELVPEAQVYVFDEAHQLPEIATNYFGKSVGSRTILDLAQDIQLAYRAEAHDMGQLGKAADRLSIASQDLRLAFGIDGGRGNTRDILRQPLWGQALARLNDAIGLCYEVLKLALGRGEQLDHAFERVCELRTRLGEVLAVNQTGFSYWYDCSRLHFSLNLTPLSVAERFGAEVQKPEVAWIFTSATLTVDMRFDHFKAELGLAGSAELILDSPFDYAEQARLCVPRFLPEPNAFGRGEQLANLMIPLINKTPGGCFFLCTSHQVMRQVAEVLRREIGRTVLLQGEDNKQRLLKTFVENGRAVLVATSSFWEGIDVRGAALSCVIIDKLPFASPDDPLLKARVDDCKLKGGDPFAELQLPKAVIALKQGVGRLIRDRSDHGVLVICDPRMVNKPYGATFIKSLPAIPRTRELESLGSFFDRGA
>NZ_CP006579.1|WP_025326934.1|2132638_2132884_+|hypothetical-protein
MPSQDLLFPILPRAPSTPSPDDIKREVTQISQKHQLRKIGTDNGGGAQQYQQGHHPARRDQPKEQEDDHKPDPDHQIDLFV
>NZ_CP006579.1|WP_025326945.1|2143971_2144349_+|YbaN-family-protein
MKRWCLMALGWLAFATGIVGIVLPLLPTTPFMLLAAALFARSSPRFHSWLLAHPWFGPPIHDWQQYRGIRRHARRRAIIFILLSFSVSLLVVPLPWVRLLLVVIMVILLTWLMRLPVLEPVAMEK
>NZ_CP006579.1|WP_025326946.1|2144481_2145027_+|adenine-phosphoribosyltransferase
MNPDTLKFIEASIKTIPDYPKQGILFRDITSLIENAEAFKATIDLLAEHYRDQGITKIVGTEARGFIFGAPVAFAMGLGFVPVRKPGKLPRAIIEESYALEYGTDTLQLHTDAIVPGDKVLVVDDLLATGGTVDATVKLIRRAGGEVADAAFIISLPSLGGDARLTAAGVKVVSLVELAGE
>NZ_CP006579.1|WP_025326947.1|2145198_2147733_+|DNA-polymerase-III-subunit-gamma/tau
MSYQVLARKWRPHTFEQVVGQQHVLTALTNALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDNVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQSQIAKQLEWVLDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRLESVLTMLGTLDHHHLHQLLEAILRQDAPATMAKITEIATLGPDFDQLHAELEALLHRVAMAQLLPASVQEQGADADALLQLAGAMSPEEVQLCYQIVLGGRKDLPWAPDGRTALEMTCLRMLAFSPRREAVHPANLSALPVSMGALPGAGREAVSALPGKPSGAEPAPHQAATAASTAAPAALTPTAPLLAVQADEPTSGDDESNATLFAEQHELLEEAQRMGYEAQPMQPEPQIGGAPRAQEAQPLEPEQPASSHEEAQPTAAPVIAPDPEAAPSAASSMQSLLGKRNLLRSRLRGDAGAATSSVPPRATPSKPAAPLTIPAVQPVAPAPSAPVRQAAAAPAYAGPMPGYEDLPPLDAYDDSGSDYEEYLNQGFGDGPASAPAAQAAAPVAPRPSAPQKASPASDDLPPWDLDGVPARTAAATTVVAAPATPVTTPLAVPENVQPTAVQVMETIDWDELESDAQPQEGEEVTRLIPSSLLVNCGDPWAELIARTGVGGRLRQLAINSVMTRQGELVSLVLKPEQRHLVSDRALADLAEIIGPEFGQPVRVEVVLGTDPARETPLEIEHRLYLGVREQVSRDLADDPNVQFLQQRFGAVLHPESIEPLSR
>NZ_CP006579.1|WP_011706069.1|2147862_2148192_+|YbaB/EbfC-family-nucleoid-associated-protein
MFGKGGMGNLMKQAQQMQERMQKMQEQLAQMEVVGEAGAGMVKVTMAGSHSVRRIEIDPSLMEDDKEMLEDLVAAAVNDAVRRVEEQNKSKMGELTGGMQLPPGFKMPF
>NZ_CP006579.1|WP_025326948.1|2148691_2149318_-|hydrolase
MNKPYVKLDKQNAAVLLVDHQAGLSSLVRDIEPDKFRNNVLALAALAKYFELPTILTTSFENGPNGPLMTELKETFPDAPYIARPGQINAWDNEEFVKAVKATGKKQLIIAGIVTEVCVAFPALSALEEGYEVFVITDASGTFNEITRHSAWDRMSSAGAQLMTWFGAACELHRDWRNDVEGLGTLFANHIPDYRNLINSYTTVQSSK
>NZ_CP006579.1|WP_025326949.1|2149554_2150421_-|pirin-family-protein
MKELAFIKRSNGRHWVGDGFPVRSIFSYNDIAEEMSPFLLMDYAGPATFPATSHQLGVGQHPHRGFETVTIVYEGGVSHRDSSGGGGTIGPGEVQWMTAASGLIHEEYHSPDFARTGGAFEMVQLWVNLPARDKMTAPGYQGITAKEIPRVALPEGAGEARIIAGRFGETVGPARTFTPMNVWDMRLKAHHRVTLELPEGHTTALFVLKGAIRLGNRHTVRTAELAVMERRGSKLVMEVEEETTLLLLNGAPLDEPIVGHGPFVMNSQEEIVQAINDYNSGRFGQIGR
>NZ_CP006579.1|WP_025326950.1|2150518_2151409_+|LysR-family-transcriptional-regulator
MDFNQVVVFVKVVQAGSFSAAARLLGLPTSTVSHRVAMLEKRLGVTLLQRTTRRLHLTDAGQIYYDHASAGLVHVLDAEAAVTEAREEPCGLLRITAPVDIGNQILSSILGQMRSQWPKVDVELVLMNRYVDLVAEGVDVAIRTGPLKDSTLIARQVGVAHWALFASPDYLASAPALDAPPALRHHACLQFTPLGKEAWVLHDEAANSLIVSLARQTLINDVGLIMTMVQAGCGVALLPSYLCRQACEEGRLVPVLPEWHGKADPIHIVYPRQRFMAPRLRAFVDLATLTLRQWLE
>NZ_CP006579.1|WP_025326951.1|2151495_2152818_-|YjiH-family-protein
MEPEHALTAPARSGAGIKLLLTSVLGIAIFFVPFELAGRSTILVDHLAGFLMAQRPLALGLILLLIAYGAISPLLDGRWRARPIDRLLTLFKLLGLGLAIMYVADWGPAWLMTPDRLPFLFDKLAMSVGLIVPIGAMALTFLLGFGLLELIGVLMQPVMRPLWRTPGHSAIDAVASFVGSYSVGLLITNRVFLAGKYTVREAVIIATGFSTVSAAFMIIVAKTLNLMGHWNFYFWSTLVITFVITAILARVPPISTMAHQGETDEPLPAGMSRWQAALASGLTQSSQADPVLRQLQDNLKDGLYMAAAVVPTILSVGLLGLLLAQHTPLFDLLGWLLWPLTWLLDLGEPLETARALSAGLAEMFLPAILLKDADLLVRYVTAVVSVSSVLFFSASIPCVLATKIPVSLGQLVVIWLLRTLLGILLAALCGRLAMAMGWLS
>NZ_CP006579.1|WP_025326952.1|2153277_2154348_+|LuxR-family-transcriptional-regulator
MKALEKERISPYISQLYECGINDSDIKLVVDQFRADLSGSSSLFLLRDDDKSDGIKLFSSGLTEAQQQFYVQHHRQDVWFNHYLDKGCQGIVSANTISSSVGLLASFGAQFAAGGVCRVKGRGLSSLCSYRGATQDDFSSRDLTSLTEIYSGLAAWSQHYWNLLALETQNYQLQQLVKNHNKPSAIIDDKGHIHYSNVAFNRIADENVELRAVNGIFSLQNKEQQRQLKETLNGFAYLLPGASAYMSIPRQSNLRPLLIQCTLMSGLSRFERYVEVVLRDPEHSFNPDIEALASLYPLTIGEKELLVLMSKGYSSNDIAELRGVKVETVRSTLKGVFKKTDCHSQNELLLLLQSIS
>NZ_CP006579.1|WP_025326953.1|2154430_2154853_+|CBS-domain-containing-protein
MESLKAKDYMQTKPITFSADMMVQNAVTKFLNSHQLGGPVVDSLGHLIGWVSEQDCIAVMLKEAYHCEQVAQVKDVMRKEVLAVGPDTSILDLAEMMMGQKPKIYPVVEEGRLLGVISRHNVMQAIHAQLGTCFVHQARV

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Crispr_ID: NZ_CP006579_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006579_17

2480229-2480302

Orphan

Consensus_repeat	Method
AACAAGATCATGCATATGCTCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006579_17

>merge|NZ_CP006579|17|2480229-2480302|CRISPRCasFinder
AACAAGATCATGCATATGCTCTAGCGATTGGATCCCGTCGCCAGCATCAATAACAAGTTCATGCATATGCTCTA

>NZ_CP006579|17|17|2480229-2480302|CRISPRCasFinder
AACAAGATCATGCATATGCTCTA	GCGATTGGATCCCGTCGCCAGCATCAAT
AACAAGTTCATGCATATGCTCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006579.1\|WP_025327208.1\|2485502_2486246_+\|penicillin-insensitive-murein-endopeptidase	unknown	unknown	gnl\|CDD\|236511
NZ_CP006579.1\|WP_025327194.1\|2471368_2471923_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|368781
NZ_CP006579.1\|WP_025327196.1\|2472840_2473566_-\|oxygen-insensitive-NADPH-nitroreductase	unknown	unknown	gnl\|CDD\|182710
NZ_CP006579.1\|WP_025327207.1\|2484796_2485339_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_081805676.1\|2484306_2484585_-\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|240845
NZ_CP006579.1\|WP_025327203.1\|2480860_2481877_-\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|178323
NZ_CP006579.1\|WP_025327195.1\|2471916_2472681_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025327209.1\|2486288_2486894_+\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
NZ_CP006579.1\|WP_025327193.1\|2470134_2471355_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
NZ_CP006579.1\|WP_025327210.1\|2486890_2487616_+\|TPM-domain-containing-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP006579.1\|WP_025327191.1\|2468476_2469070_+\|GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|234745
NZ_CP006579.1\|WP_025327202.1\|2480362_2480794_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|312075
NZ_CP006579.1\|WP_025327206.1\|2483330_2484230_+\|aldo/keto-reductase-family-oxidoreductase	unknown	unknown	gnl\|CDD\|227322
NZ_CP006579.1\|WP_025327205.1\|2482745_2483153_-\|transcriptional-regulator	unknown	unknown	unknown
NZ_CP006579.1\|WP_025327197.1\|2473633_2475196_-\|AbgT-family-transporter	unknown	unknown	gnl\|CDD\|225525
NZ_CP006579.1\|WP_025327204.1\|2481963_2482671_-\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|181609
NZ_CP006579.1\|WP_025327200.1\|2478238_2479183_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP006579.1\|WP_025327199.1\|2477459_2478161_+\|DUF2982-domain-containing-protein	unknown	unknown	gnl\|CDD\|378593
NZ_CP006579.1\|WP_025327198.1\|2475349_2477290_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NZ_CP006579.1\|WP_025327192.1\|2469129_2470041_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656

Protein	Function_ID	Function_description	E-value
NZ_CP006579.1\|WP_025327208.1\|2485502_2486246_+\|penicillin-insensitive-murein-endopeptidase	gnl\|CDD\|236511	PRK09429, mepA, penicillin-insensitive murein endopeptidase; Reviewed.	2.89043e-126
NZ_CP006579.1\|WP_025327194.1\|2471368_2471923_-\|VOC-family-protein	gnl\|CDD\|368781	pfam06185, YecM, YecM protein. This family consists of several bacterial YecM proteins of unknown function.	8.51249e-24
NZ_CP006579.1\|WP_025327196.1\|2472840_2473566_-\|oxygen-insensitive-NADPH-nitroreductase	gnl\|CDD\|182710	PRK10765, PRK10765, oxygen-insensitive NADPH nitroreductase.	6.80329e-158
NZ_CP006579.1\|WP_081805676.1\|2484306_2484585_-\|RNA-binding-protein	gnl\|CDD\|240845	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins. This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. .	2.66511e-36
NZ_CP006579.1\|WP_025327203.1\|2480860_2481877_-\|low-specificity-L-threonine-aldolase	gnl\|CDD\|178323	PLN02721, PLN02721, threonine aldolase.	5.88287e-146
NZ_CP006579.1\|WP_025327209.1\|2486288_2486894_+\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	3.55586e-81
NZ_CP006579.1\|WP_025327193.1\|2470134_2471355_+\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.70531e-59
NZ_CP006579.1\|WP_025327191.1\|2468476_2469070_+\|GTP-cyclohydrolase-II	gnl\|CDD\|234745	PRK00393, ribA, GTP cyclohydrolase II RibA.	1.41859e-136
NZ_CP006579.1\|WP_025327202.1\|2480362_2480794_+\|PAS-domain-containing-protein	gnl\|CDD\|312075	pfam08448, PAS_4, PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.	0.000186453
NZ_CP006579.1\|WP_025327206.1\|2483330_2484230_+\|aldo/keto-reductase-family-oxidoreductase	gnl\|CDD\|227322	COG4989, COG4989, Predicted oxidoreductase [General function prediction only].	4.50035e-171
NZ_CP006579.1\|WP_025327210.1\|2486890_2487616_+\|TPM-domain-containing-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.6303e-60
NZ_CP006579.1\|WP_025327197.1\|2473633_2475196_-\|AbgT-family-transporter	gnl\|CDD\|225525	COG2978, AbgT, Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism].	0
NZ_CP006579.1\|WP_025327204.1\|2481963_2482671_-\|short-chain-dehydrogenase	gnl\|CDD\|181609	PRK09009, PRK09009, SDR family oxidoreductase.	1.52961e-33
NZ_CP006579.1\|WP_025327200.1\|2478238_2479183_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.22227e-43
NZ_CP006579.1\|WP_025327199.1\|2477459_2478161_+\|DUF2982-domain-containing-protein	gnl\|CDD\|378593	pfam11201, DUF2982, Protein of unknown function (DUF2982). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	3.1598e-70
NZ_CP006579.1\|WP_025327198.1\|2475349_2477290_-\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	1.10598e-106
NZ_CP006579.1\|WP_025327192.1\|2469129_2470041_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.58496e-50

>NZ_CP006579.1|WP_025327200.1|2478238_2479183_+|LysR-family-transcriptional-regulator
MKYIEEFYLFVKVVQEGGFSHAAAALGMPTGTISRRISQLEEQLGCALLHRSTRKLRLTDEGLRYYERLCTPLAEIEQATGEIQGQERDISGLIRLAAPIALSNTILVDMLADFGLRYPGVQFDISQTNDQAPLCDQDRDLVFFNGELSQTLPNALCLGHIEYGLFASPLYLEKMGIPSHPAQLEEHDLIYCWPHQHWQLSGRDQQTVQIKRTPRLNVNQTQAAVRAARRHLGIVNAPLHYVHPFLQDEQLVAVLPDWQAGKRPFYMLHCQPQFTPLRVKMFADFVEKYSARYRHHQRDDQFLPAMPLPVASDG
>NZ_CP006579.1|WP_025327199.1|2477459_2478161_+|DUF2982-domain-containing-protein
MKTLHVIPMVRRNGLTLVLLGMVITIAMIFILFFFPEQLLMPVIFLLLTGLMTILVGALKLSEPHFSLSLCQDCLQYHHKYGGWILKWRNIQRIDQPRIHLGWDLVPLPYIGLKIKDYDDFLTLITPRLAVRLLTEQRAVLLQAMNSERPDCLTGGCGSGLLGEGLLEESRFRTPSGQQYDGVIAMLGNRMARLRDLLGYDLLVPDNSLDRPPADFVHLLNQYQRESNLIQIN
>NZ_CP006579.1|WP_025327198.1|2475349_2477290_-|EAL-domain-containing-protein
MDVLHTPIWVYDIQRHHIYWANGSALGLWEASSLAELQSRDFSADMAAAIDLLLQRYLGDFQQDRSYNEWWTLSPKGVKKQVYLRLSGIQLAGRQMMMTEAVIDADTLYQESSLATGDTLACLFDNQGCLESGNHHFDMCFGTGITRLAQVFSGDDGAFYTRLSRVGEVVAEGECRTQKGMRWFQYQFRHIQQGARILLTMRDITDRKLEELEHRHLAWHDSLTGLLNRYGLMKSLEAYCGLGGRFALVFMDLDNFKLVNDNYGHKAGDRLLERVAGRLKQICPRDVELARLGGDEFTALVPLSQASERAQEVADLMLSQMSKPLQLSGVPEVTIGGSIGIAIYPDDADDGDNLITRADMAMYQAKQMGRLRWQRFTPSMQQSLHRKLTLKQFLAKAVGRGELSLRYQPQVDVAQGKLIGLEALLRWYNPVLGHVSPAEFIPLAEEMGLIREIGSWVLATALAQMGEWQRQWQVRVPVSVNLSGFQLSASLPGQVAQQLRESGVEAGLLTLELTETVLMLDMKGCIEILDALSEQGIKIAIDDFGTGYSSLAYLNRLPIDTIKLDRSFVVGLNLPVIRATVAMATSLGLGILAEGVEDEHELAALRAQGCHVFQGFLFSTPMTPEEVAAAGFGIRCKLGHYPLIST
>NZ_CP006579.1|WP_025327197.1|2473633_2475196_-|AbgT-family-transporter
MSQAAVNERPASPNGWLNRFLNGVEKAGNKLPDPAMLFLYALLIVWVGSWIGSQFSFDLVNPRTGEAVVVNNLLTGAGLAEFLASMVTTFTGFAPLGIVLVAMLGVGVAEQSGFINTGLKKLLKVTPARFLTPMLILVAIVSHTAADAGYVLVIPIGGIIFHAAGRHPLAGIAAAFAGVSGGFAANFLPSGGDALLQGFTQSAAQLLDPDYMVNTLCNIIFTGASSLLIICVGWFVTEKIVEPRLKQVPLNEDLESADEMGRYSAQESRAFNWAGFAMLAAVLLLGLALSPDDSPMRAPDGSLTTFAAPVMKSIVPLIFLLFILPGIVYGFVAGSFKSGKDVIDAMSATMNKMGSYMVMAFFCALFIKAFGDSNLGTLLALSGAEVLHALALPGEVTIVGMILLTASVNLVVGSASAKWALISPILVPMLMAVGISPELTQAAYRVGDSASNIITPLMVFFPLVVVYCQQYVKSTGIGTLVSMMLPYSLAFLVSWTCFLLLYWALGFPLGLQAPYVYPAP
>NZ_CP006579.1|WP_025327196.1|2472840_2473566_-|oxygen-insensitive-NADPH-nitroreductase
MNPTIDLILSHRSIRQFTPEPISASQLDQILSAAQSASSSSFLQANSLIRVTDKGLRATLAELAGHQAYVAEAAEFLLFCADYQRHSQIVPEAQTGFVEQLMIGAIDGALMAQNALLAAQSLGLGGVYIGGIRNNPAAVSELLGLPHQVIPLFGLCLGHPAQQPEQKPRLPRALVVHENRYPDSLDRALLAQYDEQIHDYYLARSSNNKVQTWSGQIKAILGKEARPFMLGFLQSKGFCLK
>NZ_CP006579.1|WP_025327195.1|2471916_2472681_-|hypothetical-protein
MILTLILLSIGALLFLVIAYNVVQQYKQKAEADKRQAIARHKAVADETEEVLLNVNLVPFSKNMVLLLQHRILDAYRAIVQVMPNAQVKQRIIDVQTQIKNVQENYSSQDEGHFKTPESDRQAIQMLQLAKKMRAVLRVEHNKGKIDPQGFAQEDRRLELMQLKINIANLIKRAMDAQIQGQYGTCRQLYTKGLGALANVSDKDPYLLAREEDMRQGMRQLEEHLQQHSEKELQNIKDKEADELDVLFQPKKKW
>NZ_CP006579.1|WP_025327194.1|2471368_2471923_-|VOC-family-protein
MVIMSHPLDTTLGPMAPFVCQLLTEMHALMGESDVPMVDHLCYRAASLPEYLALKETLARHGVLLVEGMIGGRPIATYRLHQPVCWQQVTVPCIELAAPKAGRAHQAGLEHIELVVPSLPALVAAHPGLVFKTANMDDGRNPDVGLMLPSGQIKFHLRPLSEVIDEELHTGAVVPVPADYYDAQ
>NZ_CP006579.1|WP_025327193.1|2470134_2471355_+|MFS-transporter
MIEVGSREWIRATLALSLGSFLVFLNLYQTHPLLPLLAQVFSVSSLSAGWTLAGCTAGLAGSLLICARLADRFGRRRIMLWTLTGAILLSLCIPWVTRFDLLVCLRILQGALLAGLPATAIAYMGEEFSKRALLSAVGVYIAANSLGGIAGRVVGGLLAGWFGDWQHTFLGIGLISLALLPLVIWLLPAQTRFVAVEAAPGQLRRAIQSHLGNPLLLGAYLIGGLNFMVFLNQYSYLTFLLAKAPFSLPTQWLGMLFLTYLTGTLASSLSGRCAHRWGAQRLLLAGIALMALGSLALLQGTLAAIIGGLLVSSFGFFLAHACASAWVGQHVEHNRALASSLYLVGYYLGASLGGLYLHPFWERGGLWGLVLGIELVLCVTAALSLWLGHLKGRAAQPLSSHASSRQ
>NZ_CP006579.1|WP_025327192.1|2469129_2470041_-|LysR-family-transcriptional-regulator
MDLKQLGYLLAVRDAGSFTKAAQGLHVAQPAVSMAIAKLEQQLELRLFDRQDRIVRLTPEGEVLCRHAERLLLQMHQAEAEMAELKGLERGEVRIGIPYMMGSYYFPPILMAFKHSYPGLKIRVEEAGTRELLSRMVDGSLDLAILITSDLPPGLEGAQLLREEMLMVVGEEHPLRGASAVSLPQFFSQELAMFRRGFYHREHMEALAQGLGIEPNIGFESNLIPLLKAVVRQGFAVTTFLRMALEEETALSGIPFAPPIFLDLCVAWRRGDPLSMANRALRDFLLAQANPEPTSDGAPGDNK
>NZ_CP006579.1|WP_025327191.1|2468476_2469070_+|GTP-cyclohydrolase-II
MSSVTLVAKSKLPTPWGTFTLVGFQETGTGKDHAALVMGDIADGEPVLGRIHSECLTGDALFSLRCDCGFQLQAAMEKIAKAGRGVLLYVRQEGRGIGLLNKIRAYHLQDQGADTVEANVALGFAADMRDYTICADMLKALEVKSLRLMTNNPRKLKAMESFGIPVAERVPLQEGRNPHNEFYLSTKANKLDHLFKK
>NZ_CP006579.1|WP_025327202.1|2480362_2480794_+|PAS-domain-containing-protein
MEIREFHWLMNIVQNLDVGLVVLDKGYRVQVWNGFMESHSGRLAGEVRDQVLFDLFPDVDRAWLERKANMVFKLNNRAFSTWEQRPYLLRFSNYRPITGSAPHMYQNLTLVPLADFGGEVTHLAIMIYDATDEAMLIRGQRQG
>NZ_CP006579.1|WP_025327203.1|2480860_2481877_-|low-specificity-L-threonine-aldolase
MRYIDLRSDTVTQPTEAMRQSMLHAEVGDDVYGEDPSINALERRGAELLGKEAALFVPSGTMSNLLAMMSHCQRGEGAVLGSASHIYRYEAQGSAVLGSVALQSVPMQADGTLALSDVRAAIAPDDAHFVQTRLVCLENTHNGKVLPLHYLREMRDFVDEHGLLLHLDGARLFNAVVASGEPVAAIAAPFDSISVCLSKGLGAPVGSLLVGSHGFIARARRLRKMLGGGMRQGGILAQAALFALDQHVTRLADDHRRARRLAEGLAPLPGIELTVAEVQTNMVFLRLTRGDPATLLGFMKERGILFSGYGELRLVTHLQITDDDIDEVIDAFTEFLNG
>NZ_CP006579.1|WP_025327204.1|2481963_2482671_-|short-chain-dehydrogenase
MSYLILGSGGLGGALAHELASRGEEWLLAGRQLPKGLDPACYFPLQEVDPLSFEALFTLYDATTLPTVVINTIGLLHDLNHMPERRVEEVSPQWLGESLQANAWPHLALGASLSRLMTPESRLWLCSLSDLAGSLGTGNLEAVGRYSYRMSKAALNMGARILAAEWAERFPGAGVITVHPGLMDTPMQQPFRQGLDPALLQDPALVAPQLLDLLASLTLAHSGSFVDLRGQPLPW
>NZ_CP006579.1|WP_025327205.1|2482745_2483153_-|transcriptional-regulator
MEGFAARLQSLIGEGSVSAFARKVGLSEALIRKYLKGAEPGLGKANQIAMGANCSLEWLATGCGYLYRQAEVVDRDALAAAGALVQEKLPGQPLPDEQHLVTLLAYYQFLRSHKQADGFLDLARAREFGRHLAEA
>NZ_CP006579.1|WP_025327206.1|2483330_2484230_+|aldo/keto-reductase-family-oxidoreductase
MSVSRLALHHQGPTFSRLIMGYWRLMEWQLSPAALLDLMKYHLDLGVTTIDHADIYGGYQCEEAFGQALRLEPSLRGRMEIVSKCGIALTAKPEHALNHYNTSKEHIIASAEASLQKLGTDHLDLLLIHRPDPLMNADEVAEAFISLKQAGKIKHAGVSNFTPHQFALLQSRLPFPLVTNQLEISPLHQEGTLDGALDQCQQLGIKPMAWSCLGGGRLFNDPAYAPLRAELEQIRHEVGAQHIEQVVYAWVMMLPSQPLPLIGSGKRERIAAAVAAESIQLNRQQWFRIRKAALGYDVP
>NZ_CP006579.1|WP_081805676.1|2484306_2484585_-|RNA-binding-protein
MKIYVGNLSYRMTADELTNVFSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGDAEKAIAELHGTEIGGRTITVNQAKPKTDAPRGRPQRHR
>NZ_CP006579.1|WP_025327207.1|2484796_2485339_-|hypothetical-protein
MRVSELASRGGVNWLMPPARRFYGVMICLLLASLGTVVAAVLLGYPEMGLLPWVGLVFGGIVLVMMVLPRNWQRWRLAELAWDDHHLYLLNSGEDRALALPRAALVGIERDRKVGHDGQWLDFSLDLGLDGETLSDATALLGLTREGTHEVAPGVYRFGFKRAWHSRRALSSLLAALQPG
>NZ_CP006579.1|WP_025327208.1|2485502_2486246_+|penicillin-insensitive-murein-endopeptidase
MFATALLFTTSALYAEAIGGYAAGCLKNGVSLPLTGPGYQVIRTKRLRYYGHPDLIHYLQGLANQTRLAGMPDLYIADLAMARGGPFTSGHRSHQTGLDADIWFRMANRPISKWEQDAPKEWALIDEPSYKMLPGRFGPQQLNLLRLAANKPEVARIFVNPVIKAEVCKRAADEPWVAKLRPWVGHFSHFHVRLRCPANSPDCQPQAPIPPGNGCDAELASWLKDKPQLPKVSMSYRAPVLPKRCEG
>NZ_CP006579.1|WP_025327209.1|2486288_2486894_+|LemA-family-protein
MENNKMATSLRHRATQCLLTFTLLLGLTGCGMNNIPTLDEQVKASWGQVENQYQRRADLIPNLVATVKGYASHEQETLKAVTDARARVGSVQVSDPSQLKTFEAAQDQLSSALSRLMVVVERYPDLKADQQFLTLQAQLEGTENRISVARRDYIEAVRQFNTEIRTFPGVIWSKLLYSDLEAKPSFSAKPGADEAPKVSFQ
>NZ_CP006579.1|WP_025327210.1|2486890_2487616_+|TPM-domain-containing-protein
MTMMLRALLPLLLLWTAALQAAPPFPTLSGRVVDEAALMSRKQAHQLTQQLAAFEKRSGIQLVVVSVDSLDGETIEEYGYQLGRHWGIGQKGKNNGVLLLIAQDERKVRIEVGYGLEGALPDAIAANIIQTRILPAFKRGDMVAGVVAGSQGIMQALAGEYQQVDNASKEDKLGGPWLFILVVIAMIVLHNLRGGGGGPGGRRRAAYMAGGFGAGSFGGRSGGGFSGGGGSFGGGGASGGW

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Crispr_ID: NZ_CP006579_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006579_18

2751984-2752074

Orphan

Consensus_repeat	Method
CCCCTTGCGGGAGAGGCGTAGGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006579_18

>merge|NZ_CP006579|18|2751984-2752074|CRISPRCasFinder
CCCCTTGCGGGAGAGGCGTAGGGTGCAATAAGCGGAGCGCATTGCACCACGGTAACAATTCCCCCTCCCCTTGCGGGAGAGGGGTAGGGTG

>NZ_CP006579|18|18|2751984-2752074|CRISPRCasFinder
CCCCTTGCGGGAGAGGCGTAGGGTG	CAATAAGCGGAGCGCATTGCACCACGGTAACAATTCCCCCT
CCCCTTGCGGGAGAGGGGTAGGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006579.1\|WP_025327422.1\|2757767_2758496_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP006579.1\|WP_025327425.1\|2760315_2761089_-\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|180440
NZ_CP006579.1\|WP_025327424.1\|2759081_2759705_-\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198289
NZ_CP006579.1\|WP_025327409.1\|2743284_2743842_+\|TMEM165/GDT1-family-protein	unknown	unknown	gnl\|CDD\|225030
NZ_CP006579.1\|WP_025327415.1\|2748160_2748448_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025327419.1\|2754990_2756367_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP006579.1\|WP_025327411.1\|2744982_2745990_+\|DUF4401-domain-containing-protein	unknown	unknown	gnl\|CDD\|379574
NZ_CP006579.1\|WP_025327418.1\|2754269_2754890_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_049828119.1\|2746709_2747420_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270422
NZ_CP006579.1\|WP_025327421.1\|2757057_2757771_+\|DUF4269-domain-containing-protein	unknown	unknown	gnl\|CDD\|379463
NZ_CP006579.1\|WP_158318658.1\|2759944_2760094_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_080675160.1\|2752444_2753800_+\|deoxyguanosinetriphosphate-triphosphohydrolase-family-protein	unknown	unknown	gnl\|CDD\|235403
NZ_CP006579.1\|WP_025327423.1\|2758619_2758868_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|182475
NZ_CP006579.1\|WP_025327408.1\|2742698_2743028_+\|translation-initiation-factor	unknown	unknown	gnl\|CDD\|181613
NZ_CP006579.1\|WP_025327417.1\|2750767_2751298_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025327410.1\|2744051_2744990_+\|DUF2157-domain-containing-protein	unknown	unknown	gnl\|CDD\|378311
NZ_CP006579.1\|WP_041204490.1\|2747817_2748072_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025327420.1\|2756570_2757068_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|182734
NZ_CP006579.1\|WP_041204491.1\|2748579_2749602_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP006579.1\|WP_025327412.1\|2745986_2746484_+\|GDYXXLXY-domain-containing-protein	unknown	unknown	gnl\|CDD\|379571

Protein	Function_ID	Function_description	E-value
NZ_CP006579.1\|WP_025327422.1\|2757767_2758496_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	1.19721e-147
NZ_CP006579.1\|WP_025327425.1\|2760315_2761089_-\|glucose-1-dehydrogenase	gnl\|CDD\|180440	PRK06172, PRK06172, SDR family oxidoreductase.	1.60379e-86
NZ_CP006579.1\|WP_025327424.1\|2759081_2759705_-\|glutathione-S-transferase	gnl\|CDD\|198289	cd03180, GST_C_2, C-terminal, alpha helical domain of an unknown subfamily 2 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.	2.02895e-49
NZ_CP006579.1\|WP_025327409.1\|2743284_2743842_+\|TMEM165/GDT1-family-protein	gnl\|CDD\|225030	COG2119, COG2119, Predicted membrane protein [Function unknown].	7.68041e-51
NZ_CP006579.1\|WP_025327419.1\|2754990_2756367_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP006579.1\|WP_049828119.1\|2746709_2747420_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270422	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein. This subfamily includes the periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.27932e-27
NZ_CP006579.1\|WP_025327421.1\|2757057_2757771_+\|DUF4269-domain-containing-protein	gnl\|CDD\|379463	pfam14091, DUF4269, Domain of unknown function (DUF4269). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 176 and 187 amino acids in length. There is a conserved KTE sequence motif.	7.51921e-44
NZ_CP006579.1\|WP_080675160.1\|2752444_2753800_+\|deoxyguanosinetriphosphate-triphosphohydrolase-family-protein	gnl\|CDD\|235403	PRK05318, PRK05318, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	0
NZ_CP006579.1\|WP_025327423.1\|2758619_2758868_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|182475	PRK10457, PRK10457, hypothetical protein; Provisional.	6.1248e-24
NZ_CP006579.1\|WP_025327408.1\|2742698_2743028_+\|translation-initiation-factor	gnl\|CDD\|181613	PRK09019, PRK09019, stress response translation initiation inhibitor YciH.	1.14207e-38
NZ_CP006579.1\|WP_025327410.1\|2744051_2744990_+\|DUF2157-domain-containing-protein	gnl\|CDD\|378311	pfam09925, DUF2157, Predicted membrane protein (DUF2157). This domain, found in various hypothetical prokaryotic proteins, has no known function.	8.14761e-25
NZ_CP006579.1\|WP_025327411.1\|2744982_2745990_+\|DUF4401-domain-containing-protein	gnl\|CDD\|379574	pfam14351, DUF4401, Domain of unknown function (DUF4401). This family of proteins is found in bacteria. Proteins in this family are typically between 357 and 735 amino acids in length. The family is found in association with pfam09925. There is a single completely conserved residue K that may be functionally important.	4.0963e-33
NZ_CP006579.1\|WP_025327420.1\|2756570_2757068_+\|peptidylprolyl-isomerase	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	2.34671e-90
NZ_CP006579.1\|WP_041204491.1\|2748579_2749602_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.7018e-51
NZ_CP006579.1\|WP_025327412.1\|2745986_2746484_+\|GDYXXLXY-domain-containing-protein	gnl\|CDD\|379571	pfam14345, GDYXXLXY, GDYXXLXY protein. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 171 and 199 amino acids in length. It contains a conserved GDYXXLXY motif.	2.10545e-33

>NZ_CP006579.1|WP_025327417.1|2750767_2751298_+|hypothetical-protein
MINVTDTTRELILKIWDDDYYIVAAGDQAPTKNEVITLGEMYGISFPDDYISHAVGELGGFFIEVKEELWPYAEALAVAPFWEFLRGVYSYAYSKEAPEWMNIHIAAEQFKELGHKVIPVLKIWADANVYCYNEEGRLVKYLHEENTFECVDKTWFELIEHELNELAERKNRKLKK
>NZ_CP006579.1|WP_041204491.1|2748579_2749602_-|diguanylate-cyclase
MDKILQTLSERVTQARDLESLTRPLLEMLEAVTGLESTYLTQIDVEQGTQSIRYAKNANGLAGLQIPEGMTVDWSDTLCRRAIDEGRLFTDNVAECWGDSDAARIMGIRTYLSSPVRTPSGSLYGTLCGASAERKPLVEGAEQLIGFFARLIAEHVEREQLLLQLQRANDELSRQALCDPLTGLPNRRALMQELTRLFSLSDRVGHPVLIAFIDLDGFKQINDTHGHEAGDRLLTTMARQLGSALRSGDMLARMGGDEFVAVGMGPIPEEETVEAAVRRLGRRLFEHSVLQLPLSSRVLHYPGASVGVVAVDPAHTSVDEALRQADARMYEVKRQRRALG
>NZ_CP006579.1|WP_025327415.1|2748160_2748448_-|hypothetical-protein
MANRVIGQLRALAAKVTSLFAELCEFQQRIWVVSIIKDAYTDTFIVNEGSFDEPMQWMHRKGYSAEMLARVDAMARSQVVQLELGGQRHRLMRVK
>NZ_CP006579.1|WP_041204490.1|2747817_2748072_+|hypothetical-protein
MSISVCALLMACGGDKTTGKACLGANNDSLVEGMQDKCKAGDTVATKHPAYFCDFNYAVAYNSYNSAICVYSGALKPERTTEKS
>NZ_CP006579.1|WP_049828119.1|2746709_2747420_+|transporter-substrate-binding-domain-containing-protein
MGQASASPALGKLHYLTEEYKPYNFTGEDGTPSGFAIELLHQVWQKTGTPPQAISILPWARGYYLLTQKPNVVLFATARTEARDPLFKWACPIGYAEIVLMGLASHPLKIARLEDAQQHTIGAVRADVGEQLLLNSGFDEQKIMTANRLPQALRMLTSGRVDLISSNKATLMDLIQAQQLDPAQFEVRWVLSSEQFCFAFSHPVDDALVKEFQHGLTQVLASSEFQRIQHKYFPAP
>NZ_CP006579.1|WP_025327412.1|2745986_2746484_+|GDYXXLXY-domain-containing-protein
MRRLGFLLTGLAILVGINVTVWRFEHAMSSGETVLLELAPVDPRSLMQGDYMRLSYALARQLGSPHQEGAATQTLVIRLDEQQVAQRVEGGTPDALAPDQRLLQARWQQGQWWIGPDAFFFEEGTAAQYEQARYGEFRLQADGATLLVGLRDQALKPIGHTRPAW
>NZ_CP006579.1|WP_025327411.1|2744982_2745990_+|DUF4401-domain-containing-protein
MSDLSPWERLRTAHLVEGDAPQDEQPHWSSRFLLGMVGWLAALFLLFFLFMAFESLIREASHALFMGSLLMAAALGLNRLARRSDLWDQFVLALALAADAWLLYGLIDQIDPHSAPLWLGLALLSLAIAALFEHWLVRLFHSFAAAILLTMGLACLGLQLLALPLVMAALTFCWLQAERDPERHSLYESLTLGLALSLLVLGRLHHPLWDGGTSALDELGISRLPLWLNPLLCAALLLGVMVKLKLPLFYGLPLVVISAIIPGMGAGALVLVLGFYAGSLGLMTLAGLLLLGFGSLYYYDLGLTLMTKSWLLLGSGALLLGARQLLNILGKEIPS
>NZ_CP006579.1|WP_025327410.1|2744051_2744990_+|DUF2157-domain-containing-protein
MLVTSRQTLLDWVRRGRLPRESLPAALALCDLPPASVRWQWLFDRLLLWLGCLCLGAGLVFFVAFNWQALGRLSRLALLELPLLAMLLVLWRKPLADTPRQALLLAVALNIGALLALVGQTYQTGADPWQLFATWALLLLPLAALGRSPLLWTLCWLLGQLALVLYWRLGLIDLFFSFNEEALGWCLTLLNAALWGALILAPARLGLMPSWLPGLAAGLGVTLLALLALFDAASPWVWPAWLAWLGAAYLRWHHRFIAGLAMGCLSLIAVILAALGKWMEPDINGFLLLSLIAIGLSVMASRWLQQQRRQHV
>NZ_CP006579.1|WP_025327409.1|2743284_2743842_+|TMEM165/GDT1-family-protein
MEALLTSTLSVAIAEIGDKTQLLALLLICRFRKPWPIIAGMLVATLLNHAGAAWIGEFISRWMDPKVMTWLVAGAFIAMAVWILVPDKMDDEESSLDKYGPFMATFVLFFIAEIGDKTQIATVLLAAKYDSLTQVITGTTLGMMLANVPVVLLGKMGADKLPLQGIRIACAILFVGLGASTLIFV
>NZ_CP006579.1|WP_025327408.1|2742698_2743028_+|translation-initiation-factor
MSHDNNSRLVYSTDGGMIKESTPTQSASPFPADGVVRIRRETKGRKGAGVISIHGVPADQQKTIATLLKKKCGTGGGLKEGIIEIQGDKRDLIKAELEKAGFSVKLVGG
>NZ_CP006579.1|WP_080675160.1|2752444_2753800_+|deoxyguanosinetriphosphate-triphosphohydrolase-family-protein
MTQSHYNQEDFWVHRKRQDDEGYPSKRFNSNNSDSQYQRDRARIIHSAAFRRLQAKTQILGIGESDFYRTRLTHSLEVAQIGSGISEFLHEKYDSVQDIKKWIPSLSLIEAIGLTHDLGHPPFGHGGEVALNYAMIDEGGFEGNGQTLRIITKLGEYSPSNGMDLTRRSILGILKYPSPYSKTNNYKETISSLPSPPVNLDDYHPPKCYLDDEINDVDWVLNSIPPHDRLLFTEIKNNKHKHHKTIHKAFDTSIMELADDISYGVHDLEDGIALGLITKDMWINEVVSAIECHTENKIVSELNFYTEKLFSNSNKDRKHAISKLIGNFIPSISVNKKGVFETQILDLEVTLPHDTKKILESLKAIVMHRVIKTPEVQVLEYKGQLIVLKLFEVLRANPERLLPRSTFDKYKNANNKERVICDYISGMTDNYATKLYHKLFTPSNGSIFDKL
>NZ_CP006579.1|WP_025327418.1|2754269_2754890_-|hypothetical-protein
MKIPGWPLLAFALSVPAHAGTAISGVLEPTASARAKVAEFLVWERSVKPSGLYQADLGGALPNIVSPELLCLLNAASKAREIATREAPDEKPPFVEGNPFLPNAWDHLLGSQILSSSPIPGHQGESKVKVRFTFGEPGTPLDATSGTYRFVSTYLVKEGPQGARITDIDAGGSCDFCQSGSLRAALVDTLTAYPAAGAAQCKGLGK
>NZ_CP006579.1|WP_025327419.1|2754990_2756367_-|cysteine--tRNA-ligase
MLKIYNTLTRQKEEFKPIHPGKVGMYVCGVTIYDHCHIGHGRTFVSFDVVARYLRYAGYDLTYVRNITDVDDKIIKRAAETRVTCDDLTERLIGDMHQDFDALGMLRPDIEPRATQHIHEIIALVETLLEKEHAYVADNGDVMFIVESFADYGKLSGQDLEQLQAGARVDVVEAKRNPLDFVLWKMSKPGEPTWDSPWGPGRPGWHIECSAMNSKHLGNHFDIHGGGSDLQFPHHENEIAQSCCAHGGDYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLAHFDAETVRYFLMSGHYRSQLNYSEENLKQARAALERMYTALRDLPEAAAAGGDEQVARFVDAMDDDFNTPEAYSALFDLVREINRQKAEDIAVAAGLGARLRELGAVLGILQQDPDAFLKGGEADDEVAEIEQLIAQRNQARADKNWAAADAARARLTEMGIVLEDSAGKTSWRRA
>NZ_CP006579.1|WP_025327420.1|2756570_2757068_+|peptidylprolyl-isomerase
MVTLHTNHGDITLTLNAEKAPETVANFLQYCRDGHYDNTIFHRVIDGFMIQGGGYAPGFEEKETRASIKNEAANGLSNKIGTIAMARTSEPHSASAQFFINVNNNDFLDFKSPTTQGFGYCVFGEVTAGMDVVNKIKGVKTGNYGRMHQDVPTEDVVITKVTLAE
>NZ_CP006579.1|WP_025327421.1|2757057_2757771_+|DUF4269-domain-containing-protein
MLSDCRLLGTDITAAPAAVFPSAQATPANWRRLDYLARGNPRQRSAHALLTAGCWDALERLCQDLALVSTVAIGLDRPGSDLDILCQHPDPARLASLLREQGWTASDKGHQVWLLEQTLTGPDQARWPVELYVTQAPLETLNGWRHLSLMAALLGHFGHDFYQAVLRLRLESGLKGEAAICSLLGLGGDPYAALLTLEGRDLAALHWQAPSQCDSSTPADSPAPLCPEPIKSTHPTS
>NZ_CP006579.1|WP_025327422.1|2757767_2758496_+|UDP-2,3-diacylglucosamine-diphosphatase
MSTLFISDIHLCAQRPDMTAALVRFLERDAPKADALYVLGDLFEFWIGDDDPNPLHHQVAEAFLALSRQDVPIYFIHGNRDFLLGKAFAKRAGMTLLGDPCVIDLYGERVLLSHGDLLCTLDEGYQKFRRITQQKWLRWLFLRLPLARRQIIACKMRGQSQMENAGKPQTIMDVTPAAVDALLRQHGCQLLIHGHTHRPAVHDFMLDGKPARRIVLGDWFEQGSVLSCSPQDQRLESRPLPE
>NZ_CP006579.1|WP_025327423.1|2758619_2758868_+|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGFLTWVVLGLIVGILAKWIMPGKDGGGFFMTVILGVIGAMVGGYIGTLLGMGTVTGFNLPSILIATVGALIVLFFYNKIRS
>NZ_CP006579.1|WP_025327424.1|2759081_2759705_-|glutathione-S-transferase
MVLILGKASSINVRKVLWTCAELDLPFEREEWGSGFQSTRSAEFLALNPNGMVPVMRDGDFTLWESNSIIRYLATRYGDGALYPAEARARARVDQWMDWQSSDLNRAWSYAFMSLVRHSPAHQDSQAIEASCAEWSRYMQILDRQLEATGGYVAGSRFSLADIPVGLSVNRWFHTPFKRPPLAAVSDYYERLSDRPGFCLYGNNGMP
>NZ_CP006579.1|WP_158318658.1|2759944_2760094_+|hypothetical-protein
MKIWKICLIAAQLLLVACASSDGSGPPPTGDDGSNAGGKSGGGSSYLTY
>NZ_CP006579.1|WP_025327425.1|2760315_2761089_-|glucose-1-dehydrogenase
MSHSLRLQDRVALVTGGGTGIGRAAALAFARDGARVVVAGRREAELLGTVALIRQQGGDALAVPTDVSDSAQVQALVTTTLAHFGRLDAAFNNAGVEGFAPIGEMSEADFDRLIATNLKGVWLSIKYELAAMSRAGQGGAIVNTSSWLAQGASMGSAAYSASKGGLDAMVRAMALEAGSHQVRINNVNPGIIDTPMAQRMGANDETLKPFVHLTPLGRVGQPDDVGDVVAWLCSDEARFVTGQSLLVDGGFTIAGWL

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Crispr_ID: NZ_CP006579_19

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006579_19

2999442-2999561

Orphan

Consensus_repeat	Method
GTCATGGTGTATCTCCTAATGCAGCACGATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006579_19

>merge|NZ_CP006579|19|2999442-2999561|CRISPRCasFinder
GTCATGGTGTATCTCCTAATGCAGCACGATGAAGAGGGCGCCGGCCATCACCAGCAAGGCGGCGAGCAGTCCCAACAGGATCAGAAGTGTCATGGTGTATCTCCTAATGCAGCACGATGA

>NZ_CP006579|19|19|2999442-2999561|CRISPRCasFinder
GTCATGGTGTATCTCCTAATGCAGCACGATGA	AGAGGGCGCCGGCCATCACCAGCAAGGCGGCGAGCAGTCCCAACAGGATCAGAAGT
GTCATGGTGTATCTCCTAATGCAGCACGATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006579.1\|WP_025327627.1\|2997850_2998408_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|377294
NZ_CP006579.1\|WP_148297637.1\|2997147_2997894_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025327632.1\|3002544_3003519_+\|taurine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|183158
NZ_CP006579.1\|WP_005302916.1\|2998549_2998792_+\|DUF3297-family-protein	unknown	unknown	gnl\|CDD\|371696
NZ_CP006579.1\|WP_025327635.1\|3005344_3006196_+\|taurine-dioxygenase	unknown	unknown	gnl\|CDD\|181947
NZ_CP006579.1\|WP_080675187.1\|2990553_2991990_+\|bifunctional-indole-3-glycerol-phosphate-synthase-TrpC/phosphoribosylanthranilate-isomerase-TrpF	unknown	unknown	gnl\|CDD\|236509
NZ_CP006579.1\|WP_025327637.1\|3006706_3008068_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341025
NZ_CP006579.1\|WP_025327623.1\|2992086_2993280_+\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NZ_CP006579.1\|WP_025327624.1\|2993276_2994083_+\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|237285
NZ_CP006579.1\|WP_025327636.1\|3006280_3006649_-\|DUF1428-domain-containing-protein	unknown	unknown	gnl\|CDD\|377795
NZ_CP006579.1\|WP_025327631.1\|3001175_3002279_+\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NZ_CP006579.1\|WP_025327620.1\|2988871_2989471_+\|aminodeoxychorismate/anthranilate-synthase-component-II	unknown	unknown	gnl\|CDD\|235552
NZ_CP006579.1\|WP_148297636.1\|2996655_2996985_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025327630.1\|3000133_3001027_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP006579.1\|WP_025327634.1\|3004300_3005128_+\|taurine-ABC-transporter-permease-TauC	unknown	unknown	gnl\|CDD\|182276
NZ_CP006579.1\|WP_148297635.1\|2995173_2996385_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025327633.1\|3003536_3004304_+\|taurine-ABC-transporter-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|183056
NZ_CP006579.1\|WP_025327639.1\|3009140_3009470_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|182568
NZ_CP006579.1\|WP_025327621.1\|2989480_2990494_+\|anthranilate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234682
NZ_CP006579.1\|WP_025327638.1\|3008236_3009130_-\|protoheme-IX-farnesyltransferase	unknown	unknown	gnl\|CDD\|184001

Protein	Function_ID	Function_description	E-value
NZ_CP006579.1\|WP_025327627.1\|2997850_2998408_-\|metal-dependent-hydrolase	gnl\|CDD\|377294	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase. YdjM is a family of putative LexA-binding proteins. Members are predicted to be membrane-bound metal-dependent hydrolases that may be acting as phospholipases. It is a member of the SOS network, that rescues cells from UV and other DNA-damage. Expression of YdjM is regulated by LexA.	6.35121e-25
NZ_CP006579.1\|WP_025327632.1\|3002544_3003519_+\|taurine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|183158	PRK11480, tauA, taurine transporter substrate binding subunit; Provisional.	3.33147e-177
NZ_CP006579.1\|WP_005302916.1\|2998549_2998792_+\|DUF3297-family-protein	gnl\|CDD\|371696	pfam11730, DUF3297, Protein of unknown function (DUF3297). This family is expressed in Proteobacteria and Actinobacteria. The function is not known.	1.05275e-45
NZ_CP006579.1\|WP_080675187.1\|2990553_2991990_+\|bifunctional-indole-3-glycerol-phosphate-synthase-TrpC/phosphoribosylanthranilate-isomerase-TrpF	gnl\|CDD\|236509	PRK09427, PRK09427, bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF.	0
NZ_CP006579.1\|WP_025327637.1\|3006706_3008068_-\|MFS-transporter	gnl\|CDD\|341025	cd17472, MFS_YajR_like, Escherichia coli inner membrane transport protein YajR and similar multidrug-efflux transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli inner membrane transport protein YajR and some uncharacterized multidrug-efflux transporters. YajR is a putative proton-driven major facilitator superfamily (MFS) transporter found in many gram-negative bacteria. Unlike most MFS transporters, YajR contains a C-terminal, cytosolic YAM domain, which may play an essential role for the proper functioning of the transporter. YajR-like transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.37175e-156
NZ_CP006579.1\|WP_025327623.1\|2992086_2993280_+\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NZ_CP006579.1\|WP_025327624.1\|2993276_2994083_+\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	1.97415e-123
NZ_CP006579.1\|WP_025327636.1\|3006280_3006649_-\|DUF1428-domain-containing-protein	gnl\|CDD\|377795	pfam07237, DUF1428, Protein of unknown function (DUF1428). This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown. The structure of this family shows it to be part of the Dimeric-alpha-beta-barrel superfamily. Many members are annotated as being RNA signal recognition particle 4.5S RNA, but this could not be verified.	1.80942e-57
NZ_CP006579.1\|WP_025327631.1\|3001175_3002279_+\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	6.71685e-28
NZ_CP006579.1\|WP_025327620.1\|2988871_2989471_+\|aminodeoxychorismate/anthranilate-synthase-component-II	gnl\|CDD\|235552	PRK05670, PRK05670, anthranilate synthase component II; Provisional.	8.85425e-97
NZ_CP006579.1\|WP_025327635.1\|3005344_3006196_+\|taurine-dioxygenase	gnl\|CDD\|181947	PRK09553, tauD, taurine dioxygenase; Reviewed.	0
NZ_CP006579.1\|WP_025327630.1\|3000133_3001027_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.52619e-96
NZ_CP006579.1\|WP_025327634.1\|3004300_3005128_+\|taurine-ABC-transporter-permease-TauC	gnl\|CDD\|182276	PRK10160, PRK10160, taurine ABC transporter permease TauC.	4.83075e-151
NZ_CP006579.1\|WP_025327633.1\|3003536_3004304_+\|taurine-ABC-transporter-ATP-binding-subunit	gnl\|CDD\|183056	PRK11248, tauB, taurine ABC transporter ATP-binding subunit.	4.52219e-158
NZ_CP006579.1\|WP_025327639.1\|3009140_3009470_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	gnl\|CDD\|182568	PRK10582, PRK10582, cytochrome o ubiquinol oxidase subunit IV; Provisional.	5.41089e-54
NZ_CP006579.1\|WP_025327621.1\|2989480_2990494_+\|anthranilate-phosphoribosyltransferase	gnl\|CDD\|234682	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional.	2.79428e-179
NZ_CP006579.1\|WP_025327638.1\|3008236_3009130_-\|protoheme-IX-farnesyltransferase	gnl\|CDD\|184001	PRK13362, PRK13362, protoheme IX farnesyltransferase; Provisional.	1.06435e-138

>NZ_CP006579.1|WP_005302916.1|2998549_2998792_+|DUF3297-family-protein
MSDNKPALPDRLAANPRSPHHVAECFQHEIGIRVNGKERTNVEEYCISEGWVKIPSPKAKDRYGNPMLITVKGTVEAFYA
>NZ_CP006579.1|WP_025327627.1|2997850_2998408_-|metal-dependent-hydrolase
MPTIVTHAAVPLCLGLGLGSRIIPPRLLLAGVAIAMLPDADVLAFKLGVAYGHVFGHRGFTHSLLFAFALPTLAMLFHRQFRASAATVWSFLLVSLLSHSLLDSLTTGGKGVGWLWPWRDERFFAPWQLIRVAPFKLEAYLTARGEAVILSELYWVWLPGVALMSGLILLRLIVVNRYPQQQSSR
>NZ_CP006579.1|WP_148297637.1|2997147_2997894_+|hypothetical-protein
MIVYLLLLLLFSTHTLALDPVSVAISPDQNHTVSLAKQVQLSQQEKKITLRCANQMLTFEQDGMGDIKSTVQRYDYPHFSLLTLPVSSGYGGVNIFYRLVRLVGSDCSLATDNEIANPELMSDKIESSMKSGPRYIDRTYQLNAYGEMTLVSERENYANFCIETLHPAEIAAIDCNSKKPDIYLTVGVPRASFYASAESENPRKSYLIKGDRVHLLDFSFPYARYKVAFHGKRVTTGWIAAADIDLPQ
>NZ_CP006579.1|WP_148297636.1|2996655_2996985_+|hypothetical-protein
MPAMQWLTLGVLFVIFIFALYQMVKAALDFRRDYPRYRGIYSQLESFEKHCFKSGLSLFFVIPIIKNSKFSQDYIFQVVSEIGTALAGGMFLIGVIAFIRELHNSRHNT
>NZ_CP006579.1|WP_148297635.1|2995173_2996385_+|hypothetical-protein
MKNDKIIEGSEAIAPACIAKILSGRLLPRGGSAIWRLGNELKPSDLYCYLYAKFGPPNGLQNFFRSDDSDNLIHWDWTLASKHGLVMILGLNLRSEVHLIGEWTVKGNYSLEEFVEEIKSDLASHGKEMSRIRNEVLEDWEMFVNPFKNLGESIDSLKGELDSLALDPEQENLPDPKSPDEFQAYNEKFASLVARYDRGTGLSMALRFMVPVLAESFINLLIFVLCRPDIKNNSRLYDNFVRSNIDVKIQSLHINCIGFTSEVNWSSPECAKYNSIVNERNDLLHGNFAVGKLKFNEVFFNGKVPVFKEYRSMWAQSVGVSIEHSGVHKVSQDISVVEGFIEYVLSCIEPKIREQVEIFMAKRDLGRNKANNRLGVLFPDNVVDFGVSVVPDDKGTNDDGPAE
>NZ_CP006579.1|WP_025327624.1|2993276_2994083_+|tryptophan-synthase-subunit-alpha
MNRYAQLFSRLDKANQGAFVPFVMLGDPTPELSLAIVDALVEGGADALELGIPFSDPVADGPTIQGAALRAFASHTTPDDCFTLLARIRAKYPQLPIGLLVYANLVYVRHIDGFYEKCRQAGVDSVLVADVPVQMCAPYKAAADKFGIDSIFIAPPNGDTETLKAVAELGSGYTYLVSRAGVTGAETKAGMPVDGLINTLREFNAPPALLGFGISEPAQVRDAIKAGAAGAISGSAVVKIIETHHKNPEHMLTRLKEFVEGMKAATNR
>NZ_CP006579.1|WP_025327623.1|2992086_2993280_+|tryptophan-synthase-subunit-beta
MTLLNPFFGEFGGMYVPQILIPALLQLEKAFVDAKDDPAFVAEFQELLTEYAGRPTPLTLTRNLTKGTKTRLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVATALACALLGLKCRVYMGAKDCERQKPNVFRMKLMGATVIPVHSGSSTLKDACNEALRDWAANYDSAHYLLGTAAGPHPFPTIVREFQKMIGEEAKAQCFEKEERLPDAVIACVGGGSNAIGMFADFIDEPSVRLIGVEPGGHGIESGEHGAPLGHGSKGVFFGMHSYLMQDKQGQIQESYSVSAGLDFPSVGPQHAHLASIGRADYVSITDKEALDAFQELAKSEGIIPALESSHALAHALKMARSEPEKEQVLIVNLSGRGDKDIFTVADIFEKEGTLS
>NZ_CP006579.1|WP_080675187.1|2990553_2991990_+|bifunctional-indole-3-glycerol-phosphate-synthase-TrpC/phosphoribosylanthranilate-isomerase-TrpF
MLDPLSSPDAFLNRASINQTILGKIVAAKQEWVAARKLAQPLESFQGALVPSDRDFEGELRAGSTRFILECKKASPSKGLIRDDFSPEAIADIYGNYATAISVLTDEQFFQGDFAFLPRVRARVKQPVLCKDFMIDPYQVYLARHYQADAILLMLSVLTDEGYRALFKVARELGLGVLTEVSNAEERDRALALGAPVIGINNRDLRDLSVDLARTKQLAKDIPSDRVVISESGINHRAQVADLRAHAKGFLVGSSLMSEPDLEAAVRKLVLGQNKVCGLTRPEDAAAAHQAGALFGGLIFVAKSPRYVDIPAARAVMAGAPLCYVGVFRNAQPQTIAKTVEALNLAAVQLHGDEDAAYIESLRPLLPAACQIWKAVGVSLGKESGEPLPALDFPADRLLLDTKVGSQSGGTGQAFDWSLLAGLDKSRLMLAGGLNPDNALQAAQVGCLGLDFNSGVESEPGQKDPKKLAAAFGALRQL
>NZ_CP006579.1|WP_025327621.1|2989480_2990494_+|anthranilate-phosphoribosyltransferase
MHHHLNTLYQGQSLTRDAARDAFGQVVRGEVDPIVLASLLTALKIKGETPEEIAGAAEALLAEARPFPRPDYGFCDIVGTGGDGLNTINVSTTSALVAAACGLKVAKHGNRSVSSKSGSSDLLDKMGIKLDMSPEQARRCLDELGICFLFAPQYHAGVRHAMPVRQALKTRTLFNVLGPLINPARPSYQLMGVYAPELVRPIAETLLALGLKTGMVVHGAGLDEVAIHGPTQVAEIRDGEIREYLLTPADFGLETYPVSAIQGGEPEENRAITDAILAGEGTAAHNAAIAANVAPLLVMAGKAPDFKQAAAQVLAKLASGETRLLAQALATLSHQEA
>NZ_CP006579.1|WP_025327620.1|2988871_2989471_+|aminodeoxychorismate/anthranilate-synthase-component-II
MTNIFLLDNFDSFTYNLVDQFRTLGYPVRIYRNSLPATRIMQEIEACDGDAVLVLSPGPGAPHEAGCLIDLIKLARGRVPILGICLGHQALCEAYGGTVGAAGEIVHGKRSLIEHNGHGAFAGLQSPLPVARYHSLVATYVPEELTVIAHYQGMPMAIEQRDERVLGFQFHPESIMTSEGARLLTQALAHITRPESHVR
>NZ_CP006579.1|WP_025327630.1|3000133_3001027_+|LysR-family-transcriptional-regulator
MNQDAFALLPAFVAVVEAGTFSGAARQLGLSKSVLSKKVSQLEQTLGCQLIYRTTRSLALTEAGERYFETVRHAVRLASEGEDAIGALQSAPRGLLRVTVPMVYGRRHIAPLIPEFLALYPEVQLQLEMSDALQDLVAEGFDVAVRIGELEDSSLVARRLASCHSTLCAAPAYLARAGTPRTPAELERHNCLFYSLFRGGTQWRLQGPEGEVAITPSGNFEVNNSDAIHTALLAGLGIGNMPDFIVERDLATGRLVPLLPDHALPEHGIWCLYPKRRHLPTKVEAWLGFLHERLGLR
>NZ_CP006579.1|WP_025327631.1|3001175_3002279_+|YdcF-family-protein
MKKTAIALTLASLLALPVVTASDAWAAPVRSLQKEQNYDQYISKRQVVDQLLADAARIFHSPARVSDAGFTAKMPSNMEQVTELLLQAHQLEPYRTDLLISAANAQIYNGNVDRAIALFEQALSTAPDDLDLNTYLATWQRFKGNQAKSDGYVKRVGELNAGRAADLQRLFDTVDRVIATPLKERQGRGEKKGRQAIVTLGYALNPDGSMHEILLGRLETTRSLAQANPAALIILTGGVPQNRQTEGKLMADWLAKKGIDRSRIIEENYATSTVENALYSGYVLARHEIEYATLVSSASHVRRGQTLLEIACWQSGPANIRIDSVAYPDKPLSALAKASPEELLGIYRDALRTYGLWSYRSAPLLER
>NZ_CP006579.1|WP_025327632.1|3002544_3003519_+|taurine-ABC-transporter-substrate-binding-protein
MKGKGISLWFAALALTLQSAQALEVTVAYQTSAEPAKVAQADGTFARESGATVDWRKFDSGASVVRALASGDVQIGNIGSSPLAVAASQNLPIEVFLLASKLGESEALVVKQGLAKPEDLVGKRIAVPYTSTTHYSLLAALKHWGVDPAELQIVNLQPPAIIAAWQRGDIDGAYVWAPALNQLTKEGKVLTDSARVDEWGAPTLDVWVVRKDFAKAHPEVVQAFVNSTLVAQRDYLANPDHWLTQPDNLGKLSALSGVPAAEVPGLVKGNTYLDAKAQSAELSSLVNQTIIDTARFLESQGKVPNAASDYRQFVTDRFVKSVAQ
>NZ_CP006579.1|WP_025327633.1|3003536_3004304_+|taurine-ABC-transporter-ATP-binding-subunit
MLQLSHLSAEYAGRRVLDNINLSLPEGELMVVLGPSGSGKTTLLNLVAGFEPCHHGQISLAGKQVTGPGAERGVVFQSEGLLPWRNVRENVALGLALAGVPRAERDDQALALLRKVGLAGSGERAIWQLSGGQRQRVGIARALATRPQLLLLDEPFGALDAFTREQMQTLLLRLWHEERRQVLLITHDIEEAVFLATDLVLLSPSPGRVMERLTLEFGRRFVAGEPCRSIKSDPAFIERREYVLGRVFAEREAFA
>NZ_CP006579.1|WP_025327634.1|3004300_3005128_+|taurine-ABC-transporter-permease-TauC
MSIALTRQLSAGRRALRWPLPRRLTLSLATLIALLALWWLVARLGWVDPLFLPPPERVLAQLLTIAGPQGFMDATLWQHLGASLGRILIALVAAAFFGIAAGIAMGLSPTVRGMLDPLIELYRPVPPLAYLPLMVIWFGIGETSKVLLIYLAIFAPVAMATLAGVQSAKAVRVRAAQALGASRMQVLWHVILPGALPDILTGLRIGLGVGWSTLVAAELIAATRGVGFMVQSAGEFLATDVVLAGILVIALIAFLLELGLRALQRRLTPWHGEGQ
>NZ_CP006579.1|WP_025327635.1|3005344_3006196_+|taurine-dioxygenase
MNHKLTITPLGPHIGAEIAGIDLGDPLTQGQFEQIHRALLKYQVLFLRNQPISPRQQRALANRFGDLHIHPVYPHTEEAEEIIVLDTHDGNPPDNDNWHTDVTFIETPPALAILAAKQLPPTGGDTLWASGIAALAALSPPLQKLLAGLEAEHDFTKSFPAHRHDGSEAERQRWQAAVARHPPLRHPVIRTHPVSGRQALFVNEGFTTRLPGLPSKESEALLGFLFEHIRRPEFQVRWRWQENDIAIWDNRVTQHYANADYLPARRVMHRATILGDKPFWRPG
>NZ_CP006579.1|WP_025327636.1|3006280_3006649_-|DUF1428-domain-containing-protein
MSYVDGFVIAVPTVNKQALIDHAGLFDPIFLEYGATRVLECWGDDVPHGKQTDFYRAVAAKEDESVVFSWVEWPSKAVRDEAMTKMMKDPRMDPASPMHQTMPFDGARMIFGGFTTVLELKS
>NZ_CP006579.1|WP_025327637.1|3006706_3008068_-|MFS-transporter
MNDFTMTRGERRATWALGSVFSLRMLGMFMVLPVLTTYGMSLAGASEALIGLAIGIYGMTQALFQIPFGLLSDRIGRKPLIVGGLLMFALGSVIAALSDSIWGVIVGRALQGSGAISAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVTGPLITQAVGLSGLFWLIALLALAAIAMVIWVVPTPAAHLQNRESAMVRGGFRTVLTNGRLLKLNLGILCVHTLLMSSFVALPPLLEQAGLAREHQWQAYLVTMLIAFVSVVPFIIYAEKHRQMKRVFQACVLVMLVAELVLWQAGLQLWGLLAGLQLFFVGFNVMEALLPSLISKESPPGYKGTAMGVYSTSQFLGVAIGGSLGGLLYSLGGGPLVFGGCAVLALLWFGVSLTMAEPPYVSSLRIVLPEGVAATPVLEQRIRACDGVSDVLLVPEEHSLYVKVDSKRLTRSDLERLVAL
>NZ_CP006579.1|WP_025327638.1|3008236_3009130_-|protoheme-IX-farnesyltransferase
MMMKQYLQVTKPGIIFGNLISVIGGFLLASKGSLDVPLFILTMAGVSLVVASGCVFNNYIDRDIDCIMERTKNRALVRGLIAPGVSLWYASALGVAGIALLYFAANPLAALLAVLGFLVYVGVYSLYMKRHSVYGTLVGSLSGAAPPVIGYCAVSGQFDSGALILLAIFSLWQMPHSYAIAIFRFKDYQAANIPVLPVVKGISVAKHHITLYILAFMVPTLMLFLGGYAGYKYLIVATAVSVWWLGMALSGYKAAVDDSLWARKLFMFSIVTITCLSVMMSVDFQPDAAPVLVSMLP
>NZ_CP006579.1|WP_025327639.1|3009140_3009470_-|cytochrome-o-ubiquinol-oxidase-subunit-IV
MSHSVDNHGASHGSVKSYMTGFVLSLILTAIPFWMVMDGSASHAMVLGTVVAMAVVQIFVHLIYFLHMNTSSEERWNLVALVFTVLIIAIVVVGSLWIMYNLNINMMVH

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Crispr_ID: NZ_CP006579_20

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006579_20

3290955-3291072

Orphan

Consensus_repeat	Method
CTCCCGCTCCCGCCAGGCGTCGAGGTCGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006579_20

>merge|NZ_CP006579|20|3290955-3291072|CRISPRCasFinder
CTCCCGCTCCCGCCAGGCGTCGAGGTCGTGGATGATCTGGTTGCAACTATTGTCACGCCAGCAACTGGCAAGGGATCCGCCCTTTGCTCTCCCGCTCCCGCCAGGCGTCGAGATCGTG

>NZ_CP006579|20|20|3290955-3291072|CRISPRCasFinder
CTCCCGCTCCCGCCAGGCGTCGAGGTCGTG	GATGATCTGGTTGCAACTATTGTCACGCCAGCAACTGGCAAGGGATCCGCCCTTTGCT
CTCCCGCTCCCGCCAGGCGTCGAGATCGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006579.1\|WP_025327875.1\|3304737_3306219_-\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|225536
NZ_CP006579.1\|WP_025327863.1\|3289963_3290323_+\|MliC-family-protein	unknown	unknown	gnl\|CDD\|226411
NZ_CP006579.1\|WP_025327873.1\|3303730_3303982_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025327871.1\|3302123_3302888_+\|sulfate-transporter-CysZ	unknown	unknown	gnl\|CDD\|179898
NZ_CP006579.1\|WP_025327864.1\|3290585_3290756_-\|YqaE/Pmp3-family-membrane-protein	unknown	unknown	gnl\|CDD\|376592
NZ_CP006579.1\|WP_005324712.1\|3280542_3281235_-\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP006579.1\|WP_025327861.1\|3287464_3288493_+\|DUF2955-domain-containing-protein	unknown	unknown	gnl\|CDD\|371403
NZ_CP006579.1\|WP_025327860.1\|3286398_3287454_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP006579.1\|WP_025327874.1\|3304043_3304589_-\|YcbK-family-protein	unknown	unknown	gnl\|CDD\|283577
NZ_CP006579.1\|WP_025327867.1\|3294300_3295275_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380548
NZ_CP006579.1\|WP_025327858.1\|3284394_3285705_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP006579.1\|WP_025327866.1\|3291750_3293868_-\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|236436
NZ_CP006579.1\|WP_025327856.1\|3281238_3282804_-\|Spo0B-domain-containing-protein	unknown	unknown	gnl\|CDD\|225827
NZ_CP006579.1\|WP_025327857.1\|3282821_3284372_-\|NAD-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|237414
NZ_CP006579.1\|WP_025327872.1\|3303022_3303637_+\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
NZ_CP006579.1\|WP_025327859.1\|3285923_3286397_+\|transcriptional-regulator-SlyA	unknown	unknown	gnl\|CDD\|179596
NZ_CP006579.1\|WP_025327862.1\|3288981_3289854_+\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|367100
NZ_CP006579.1\|WP_025327870.1\|3298575_3301950_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274008
NZ_CP006579.1\|WP_025327869.1\|3297441_3298560_-\|cell-division-protein-ZipA	unknown	unknown	gnl\|CDD\|235124
NZ_CP006579.1\|WP_025327868.1\|3295335_3297342_-\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137

Protein	Function_ID	Function_description	E-value
NZ_CP006579.1\|WP_025327875.1\|3304737_3306219_-\|L,D-transpeptidase-family-protein	gnl\|CDD\|225536	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown].	9.07596e-114
NZ_CP006579.1\|WP_025327863.1\|3289963_3290323_+\|MliC-family-protein	gnl\|CDD\|226411	COG3895, COG3895, Predicted periplasmic protein [General function prediction only].	3.10074e-20
NZ_CP006579.1\|WP_025327871.1\|3302123_3302888_+\|sulfate-transporter-CysZ	gnl\|CDD\|179898	PRK04949, PRK04949, putative sulfate transport protein CysZ; Validated.	5.51602e-141
NZ_CP006579.1\|WP_025327864.1\|3290585_3290756_-\|YqaE/Pmp3-family-membrane-protein	gnl\|CDD\|376592	pfam01679, Pmp3, Proteolipid membrane potential modulator. Pmp3 is an evolutionarily conserved proteolipid in the plasma membrane which, in S. pombe, is transcriptionally regulated by the Spc1 stress MAPK (mitogen-activated protein kinases) pathway. It functions to modulate the membrane potential, particularly to resist high cellular cation concentration. In eukaryotic organisms, stress-activated mitogen-activated protein kinases play crucial roles in transmitting environmental signals that will regulate gene expression for allowing the cell to adapt to cellular stress. Pmp3-like proteins are highly conserved in bacteria, yeast, nematode and plants.	1.10136e-11
NZ_CP006579.1\|WP_005324712.1\|3280542_3281235_-\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	1.91174e-62
NZ_CP006579.1\|WP_025327861.1\|3287464_3288493_+\|DUF2955-domain-containing-protein	gnl\|CDD\|371403	pfam11168, DUF2955, Protein of unknown function (DUF2955). Some members in this family of proteins with unknown function annotate the proteins as membrane protein. However, this cannot be confirmed.	2.51305e-45
NZ_CP006579.1\|WP_025327860.1\|3286398_3287454_+\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	3.23085e-67
NZ_CP006579.1\|WP_025327874.1\|3304043_3304589_-\|YcbK-family-protein	gnl\|CDD\|283577	pfam05951, Peptidase_M15_2, Bacterial protein of unknown function (DUF882). This family consists of a series of hypothetical bacterial proteins of unknown function.	5.47068e-73
NZ_CP006579.1\|WP_025327867.1\|3294300_3295275_+\|hypothetical-protein	gnl\|CDD\|380548	cd06325, PBP1_ABC_unchar_transporter, type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.	0.00430401
NZ_CP006579.1\|WP_025327858.1\|3284394_3285705_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.4076e-162
NZ_CP006579.1\|WP_025327866.1\|3291750_3293868_-\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|236436	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
NZ_CP006579.1\|WP_025327856.1\|3281238_3282804_-\|Spo0B-domain-containing-protein	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	5.42014e-114
NZ_CP006579.1\|WP_025327857.1\|3282821_3284372_-\|NAD-dependent-malic-enzyme	gnl\|CDD\|237414	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase.	0
NZ_CP006579.1\|WP_025327872.1\|3303022_3303637_+\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	2.9371e-70
NZ_CP006579.1\|WP_025327859.1\|3285923_3286397_+\|transcriptional-regulator-SlyA	gnl\|CDD\|179596	PRK03573, PRK03573, transcriptional regulator SlyA; Provisional.	1.41456e-32
NZ_CP006579.1\|WP_025327862.1\|3288981_3289854_+\|glycosyl-transferase	gnl\|CDD\|367100	pfam02485, Branch, Core-2/I-Branching enzyme. This is a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme and core-2 branching enzyme. I-branching enzyme is responsible for the production of the blood group I-antigen during embryonic development. Core-2 branching enzyme forms crucial side-chain branches in O-glycans. This is a fmmily of glycosyl-transferases that are Type II membrane proteins that are found in the endoplasmic reticulum (ER) and Golgi apparatus.	6.3798e-40
NZ_CP006579.1\|WP_025327870.1\|3298575_3301950_-\|AAA-family-ATPase	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NZ_CP006579.1\|WP_025327869.1\|3297441_3298560_-\|cell-division-protein-ZipA	gnl\|CDD\|235124	PRK03427, PRK03427, cell division protein ZipA; Provisional.	2.4589e-63
NZ_CP006579.1\|WP_025327868.1\|3295335_3297342_-\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0

>NZ_CP006579.1|WP_025327864.1|3290585_3290756_-|YqaE/Pmp3-family-membrane-protein
MNNLLKILLAIFLPPVCAFIQVGLSLHFFINIVLTLLGGLPGMVHALWLVVSDKRA
>NZ_CP006579.1|WP_025327863.1|3289963_3290323_+|MliC-family-protein
MKEANLALLGLGTLTLLSGCDLGAGKLGVTGGDPVTYLCEQNQKVQVRYFSLSDESLNFVKLALPDGKDYTLPQAVSASGARYTDDHEVVWWNKGKEGFVEMRDEAGEWQSRYNDCKEQ
>NZ_CP006579.1|WP_025327862.1|3288981_3289854_+|glycosyl-transferase
MIAYLILVHRYPDQFKRLFRAIYHHSNHYLIHVDKRSGPELQQEIADFLTDYPNAAMLPSKNALWGGYSLVDAELRGIAALLEQNQEWEFFINLSAQDFPLRSQRDIHDFLRDHRGKDFLKVADQRQHRPDTLHRIDHYVTETAQELLCEPVKTRPYLAGVTPYIGNQWMILSRAFCEFVSHSPEVDRFKAFYRHTLIADEGFFQTVIMNTSYQGQIVNDDKRAIDWIPMGDIKLRPRDYTVDDADALQQSEHLFARKFDETIDSDILDILERAMMCPLATPDIRQPVPA
>NZ_CP006579.1|WP_025327861.1|3287464_3288493_+|DUF2955-domain-containing-protein
MNLWHRPLTANELRQCLRIAFGCTLGFVLCKIFGWSNGVFFTVTPVLLLGMIPVMNGHAARQLIASAAMCGLEVGLLGGLFGGHPGLMTPLVFLLFLYRFAAMSRGSLFLFGANGVLSLSIMLHFASYPGTDLNDLIFSNLWASILSVLIAYLMTALIPDVEPRPAPAPSPKAPHRMRHEALLGASIATLSFLVFQLFDLRDSMSAQATTLLVLFPMHWNGALSYARKRAMGTLLGVSFGILGQLVLYDWSGLLLLVTPLLWLGAMLFSHAHVKEASGSGVGFGALTTLGILFGQYLTPGNDLVFSALYRVSSILFAIVATLLACYLIHRLLNRFEATRFGY
>NZ_CP006579.1|WP_025327860.1|3286398_3287454_+|HlyD-family-secretion-protein
MTPDQQFKRWIKWAMACFILVFGYFLLADIKMPLTPQAMATRVVTKMAPQVSGKVIEVAVVNNQHVKQGDLLFVLDPAPFELAVEQARLALDQAEQQNRQLDATLNAATADFSSLQTQTAQKQREAERIDTLYRRHMVSEQQKDDADSAARTARANLLASQARMEQARVNRGLTGDDNLLLRQARNRLAQAELNLTYSQVHASQDGIITNLQLKPGSVATAGSPLLALVSEQVDVIADFREKSLRNITPQSRALVAFDGEPGRLYPARVASLDAGVSAGQFDANGLLANPIESDRWVRDAQRLRLHLTLDQLPAHLPAGARATVQLLPDNALSALFARGQIRLLSLLHYIY
>NZ_CP006579.1|WP_025327859.1|3285923_3286397_+|transcriptional-regulator-SlyA
MKKDLEMLRELSLAEQLGRLHRLWRTVADIELAPLGLTHPRWTALWKLSRLGGHLSQKTLAEALEIELPSLMRTLGQLEELALVERHCCSQDKRARIVTLTPAGKALLDKIEDRIMEVRRDLLAGISQQELAQFEEIVHRISANALGKIGAQHEERE
>NZ_CP006579.1|WP_025327858.1|3284394_3285705_-|2-hydroxycarboxylate-transporter-family-protein
MKNLSTPAVQMKGAWSDQQIAGMPMMIFLGLATCVLYAGWNGSLPLGMVGALALMFVLGTLLSELGERIPPIREYLGGGTILAIFGGAALFEYRILPAEAGEVISRFMKEGGFLNFFIASLVTGSVFGMSGALLKNAAMRYLPVILGGVALALLSVGLVGSLMGYGFKNAVLLIGLPIMGGGMGAGAVPLVEILSGPLQMSSADLLSRMVPAVVIANTLAILVGSLLARLGRRYPSLTGNGKLMVKENSQSVADEQAEAPTLQSLGLGLFISSSMFVLGSLLGNFIPMHPFALMILAVAFIKVSGVLPRRYEQAAADWYQFVVSNLTPSLLVGIGVAYTSIPELIGAFSVNYFIMVLTTVVGGALGAALVGRMIGFYPIEAAITGGLCMANMGGTGDVAVLSAAQRMKLMPFAQISSRLGGAVMLILATALISLLA
>NZ_CP006579.1|WP_025327857.1|3282821_3284372_-|NAD-dependent-malic-enzyme
MNDIMMGTSLPYAERKRQGLMGRMPHKEESLSQQRRRIYRLVSAMQSPFDQHLLLRQLQEDNPVLFYDLVRHHLPELLPIIYTPVVGEACQRHSDLYLRSHGLYLSWHDRDELDAIFAAVEQEVDVIVISDGERVLGLGDLGIGGMGICIGKLALYSAAGGINPARTLPLCVDVGTNNPALLEDDSYLGWQAPRIDGETYYHFMDKVVAAIHKRWPRVVLQFEDFAGKHAANLLARYRNELCMFNDDIQGTAAVASACVLAGLQQAGSTLADTPVLIVGAGSAGCGIAAMLARLAVSTERVQLFDQDGLVCLDRANLTPSQQPFARPAEEACGSLPELIARLRPGVLIGVSGQGGLFTEQVLGAMGKACERPVILPLSNPTRSAEATPEQVWRATGARALLATGSPFAPVEVAGEARVVSQCNNVYVFPGIGLGACAVKARRISDGMLQAAVRAVGAYQLAEGRLLPPIEEVGEVARAVARAVALTAREEGLADFDGDPAPLIDQTWWRPHYWSAS
>NZ_CP006579.1|WP_025327856.1|3281238_3282804_-|Spo0B-domain-containing-protein
MKLRHQLVTLSLGLSLLLILILGALLALFIRHLLESNLEEKGSDLARVLAADTRVVQALQQGNDPGLRDYVQGICNRTDAAYMVVTDEHARRLSHPSPELIGATFRGEDIWPAIQERRSYCSRDKGTLGPAIRCFSPVIGADGRTIGAVAVGYLMKTVEGIYLERIALLISAIGAVLGCGLLLALLLQHRLRRTLLDLEPETIVNRFAQQDLVLEGISEGIVALDGNHRIKMLNSAAFYQLRLPGTGRHALLGQSLAELAPSLLPALNQQGGVNFTVQGEAFVGHWQDLSGREPGRMLIFSRPDGTGSLGMQVTHLRQYAEMLRIQTHEFANKLSSLSGLLQLGHVEQAVELIQQENEACQTMLQDLLRSIENKPVAGLILGKFSRARELGVELVLDPGSALGEYPAEVSADLITCIGNLLDNGIRAAWANRLRCAPRVLISVDDFGRRLVIEVEDSGEGVDEALADHLFDYGVSRQTGDHGVGLFLVKKTVARRGGVIEWRRTAEQTTLFGIYLNKNQLV
>NZ_CP006579.1|WP_005324712.1|3280542_3281235_-|response-regulator
MKPIFTLVIEDDERIGAILAELISSTPGYSLLGRAESLAQADLMMRATEPQLLVVDISLPDGSGLEWVNRLRSHNREVLVVMVTASCDVETIQQALNLGVQDYIIKPLRLFRIQQSLDEILTLHRRLCERGLLEQSDLDRLMGKGRIQPREVRDTPKGIDAITLRQVLELLAGEPDTAFSTDTVALRLSLSRTTARRYLEFLESEDKLDVDLNYGQRGRPERRYHWRRSS
>NZ_CP006579.1|WP_025327866.1|3291750_3293868_-|anaerobic-ribonucleoside-triphosphate-reductase
MKPVVIKRDGCRAPFNGQLIAEAVSRAAEAVNQANPALALRIANAVSQELEGRGEVDIHEIQNRVENHLMASDDKAIARAYIEYRHDRDQAREARGRLAQEIRGLVEQTNAALLNENANKDSKVIPTQRDLLAGIVAKHYAISHMLPREVVQAHESGDLHFHDLDYSPFFPMFNCMLIDLQGMLTHGFKMGNAEIDTPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPYVTISWQKHREVAEEWGISDVDAYAMARTEKECYDAFQSLEYEVNTLHTANGQTPFVTFGFGLGDSWESRMIQGAILGNRIAGLGKNKKTAVFPKLVFAIKDGLNHKPGDPNYDIKQLALECASKRMYPDILNHDQVVKVTGSFKTPMGCRSFLGAYEENGELIHEGRNNIGVVSLNLPRIALKSRDEADFWDKLDAALRVAKQALMYRIKRLDGVKARVAPILYMEGACGVRLKADDNVSEIFKNGRASISLGYIGVHETINALFGTQTHLFDSDVLREKAIAIIARLKAATDEWKEETGYGFSLYSTPSENLCTRFCRIDAKEFGVVAGVTDKGYYTNSFHLDVEKQVNPYDKLDFEAPYPPIASGGFICYGEYPNIQHNLEALENVWDYSYDKVPYYGTNTPIDECYDCGFTGEFECTSKGFTCPRCGNHDPAKVSVTRRVCGYLGSPDARPFNAGKQEEVKRRVKHM
>NZ_CP006579.1|WP_025327867.1|3294300_3295275_+|hypothetical-protein
MNVTKVLFLLALFPLQLMATEILVISSYHQANLWDQSYSAGLKKHLKGEHHISHLYLDTKRQPHQTREQLVSQGMAAYQARKPALVVLGDDNAINALARPISALGTPVVFLGMNENPRPKGLVGSPLITGVLERPLLKRNISEMSQLMGGIRQALVLFDESEVARTAIEHEFKARSELKVGQTRVSSRQFNDYRHWQETVLASRQNGYEAIFLGLYHTLTDEQGLHVSEQQVLAWTSANSPVPLFGFWEFAVGPGRTIGGLVLDGRTQGEKAAELANAILAGTAPGALSPRAAQRGEYLFSKSELARWQLEAPSRWQGRVIYVD
>NZ_CP006579.1|WP_025327868.1|3295335_3297342_-|NAD-dependent-DNA-ligase-LigA
MSDILSRHRQLCELLTEYGHQYYVLDNPTVPDAEYDRLMRELIALEAEHPELKTPASPSVRVGGQPLSAFSQVRHEIPMLSLDNVFSAEELQAFEQRMRDRLKREISFTFCCEPKLDGLAVSLLYVDGQLVQAATRGDGATGEEITENVRTIKAIPLVLRGSGWPARLEVRGEVFMPKAGFEAMNAKALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYGVGVGGDELGNSHYRRLIQLNAWGLPLSPEVTLKEGAAGCQAFHDDILARRGELPYEIDGVVYKVDDIALQQELGFVARAPRWATAHKFPAEEEMTLLENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHNADEIERLGVMIGDTVIVRRAGDVIPQIVAVVEAQRPADARAILFPTQCPVCGSAVERLEGEAVTRCSGGLFCEAQRKEAIKHFAARRAMDVDGLGDKIVEQLVDKGLVKTPADLFSLNAIQLAGLERMGQKSALNLVAAIDKARSTTLPRFLFALGIREVGEATALNLANHFLTLEALRAASVEQLLEVADVGDIVAKHVYYFLRQPHNIEVLEALLAAGIHWPAIEKKEAAQQPFAGKTFVLTGTLTTLSRNDAKAALQALGAKVAGSVSAKTDVLVAGEAAGSKLAKAQELGITVWTEAELQAALQP
>NZ_CP006579.1|WP_025327869.1|3297441_3298560_-|cell-division-protein-ZipA
MQELRYILVALGGIAIAALLIHGLWSNRKNRQAPIKEKPLGRMESKSRDRDSDAFDSDGIGQVRVVSGGRRAEPKLRSDEAHQPEPRRAATVPAFEDDELPPPVVRKPAPRPVTPPPVYEEEDDYDEPSAEPVEEVPAAPVRKPAQVIRRTPVHRSRPQREPMMQPLDDEPLVEPAYAQAPTFGAREPAPQQQVRYAQPAPAYEEPDYDDEPAYEEPVQVAEPVQELPPVEKIWQDVYVINLMARPGHDLQGATLLSSLLALGFKFGEMDIFHRHEDLNGKGEVLFSMINMVKPGTFNPYRMEQFSTPGVSLFMQLPLRSNAAFAFEHMLQAADQLASDLDAMLTDASRSPLSDDDIARYRHELAAYEASRD
>NZ_CP006579.1|WP_025327870.1|3298575_3301950_-|AAA-family-ATPase
MRLKLIKLAGFKSFVEPTRIELSADMTAVVGPNGCGKSNVIDAVRWVLGESSARHLRGENMTDVIFNGSINRSPHGRASVELVFDNPHNRVPGEFGRYTEISVRREVLRDGSNHYQINGQKCRRKDVTDLFLGTGLGPRSYAIIEQGTVSRLVESRPADLKLFMEEAAGVSRYKERRRETEQRIRHTQENLERLGDIRGELGSRLEHLKSQAETAERYKQLKGRSRAARAELIGSELWALETRLGEAKSELAQAEQALAALDAKRTADEGRHVTLSVARQEAQAEQASRQQQIFLGGQAIARLEQQQLHQTELGRDWQVRRQALGERIDGIKEQLASQQEQQAEGVLQGEVESARLEQCEQLLADQQAVRLAAGERLELARQRQQQWQQQLGQAQGRLNQTRTQLNGLQELQAKTRLARLKLADEQAGPLGGEGESLQPALDALSAELALSRARHGELEQQWQASLASHEALKGERERQGGLLRELGARLTTLNQMLGEQMLGATLADRLQVAPEWAQALDKVLGRWLTAQPGDQCNLEQGGLWIGPAHPAVPGTLAARLEGDHIPAFLNVIWLADDRETALARQPSLLAGESVLTPAGDWFGPNWADLGQGGALGTLALLGERERLHTELTAGEQALVQLDAQLKAADADRAHLHSAFEASQRTLREQEQQWQQLREAWSLQQGQRQERLLRLGQLGEELIRLDQEQAEEAERLATAQQQLELEEAHLAELQEQGEPLAEALLLAQEGVTGAERALEEARARREQQQASCQRWQLAQQNLAQLITLREQELARLGLELAELKGPDAQAVQDISPLLAEQRNLEAQQLACHQRLAELERQLTELEQARSADHKQLMTLQEKLAQLRLERERNLTRRQGLHEQFEELGVRLVDLDQAVLIAADRGKLRQEIQTLETQVEALGAINLAALEEYEEAKTRASYLENQCQDLEQALETLSQAIKRIDKETQIRFRDTFDKVNEDLKSLFPKVFGGGSAWLELTSDDLLEAGVSIMARPPGKKNATIALLSGGEKALTALALVFAIFRLNPAPFCLLDEVDAPLDEVNVGRFCSLVKEMSSTVQFVYISHNKVSMEMAEQLIGVTMQEPGVSRIVSVDIGEAVALAEQN
>NZ_CP006579.1|WP_025327871.1|3302123_3302888_+|sulfate-transporter-CysZ
MSQSPHMVKDSVSGADYFLRGFSLIRQPGIRTFVLIPLLVNFVLFAGAFYALLLQLDGLFAWLHQQIPAWLSWLDYLLWPIALITILVVFSFIFSSVINWIAAPFNGLLAEKVEQILTGEVVSDTGMLDVVKDVPRTFSREWTKLKYYLPKAIGCMILFFIPVVGQTLAPVLWFLFSAWMMAIQYVDYPFDNHKIDFITMRDALKQRRGKCLSFGALVTLFSAIPVVNLFVMPVAICGATAMWVDQYRSEQLRR
>NZ_CP006579.1|WP_025327872.1|3303022_3303637_+|trimeric-intracellular-cation-channel-family-protein
MLHALFLLGLVAEGMTGALAAGRRRMDLFGVVIIASATAIGGGTIRDVLLGHYPLLWVEHPEYVVLVAGAAMVGVISAPLMRYLGKLFLALDALGLVVFSIFGAARALEMGHGAGIACIMAVVTGVFGGVLRDLLCQRIPLVFKRELYAAVSLVTAALYCFALDQGLPNDWAAFGAIGIGFVLRLLAVRFKWGLPTFNYQYATH
>NZ_CP006579.1|WP_025327873.1|3303730_3303982_-|hypothetical-protein
MKHILLGGLIALLLAGCSKLNRENYDKLKMGITYAEASAILGKAERCDDALGTTSCVWGGDGKNIKIRFIADKATFFSSEGIN
>NZ_CP006579.1|WP_025327874.1|3304043_3304589_-|YcbK-family-protein
MLEQEISRRRLLLGAGCLMGASLLSFPAAASRSTTGRELSFFNLNTGERVNASYWENGRYLNDGLAELNHIFRDYRRNEVFNIDRKLFDQLFLLQHKLGRKGEIQLISGYRSPATNRQKRHRSRGVAKHSYHTLGQAVDVRIPGVQLAHLRKAALNLKVGGVGYYPSDNFVHLDTGPVRSW
>NZ_CP006579.1|WP_025327875.1|3304737_3306219_-|L,D-transpeptidase-family-protein
MGKKYWLALANLIWLGCWPAGMVHASTEQMVVASPSIQHDWYQNSTAEQARHELELQLQEAVLAQLHPDFYRLWQQLQKTPADRRGALYDEAFGKLARFQQAWRAMDLVAREQMQTLKLDLTKPLAHEPLGDNLLDQVKLLRPQVAEYEAVRDEVRKLLAMPMAKHWPTLDMPTLRAGESATELGQIRSILNELGDGAPPHQDSLYDADTEQAIKQFQRRHGLTADGIIGRQTRSWLNTGPQVRASLLLRNLWRRDLVDHLAGRYVLVNIPDYRLSVVESGSEVFTSRVIVGKEQRATPILASEIRSIVLNPAWHVPRSILSKDILPKLGRDPAYLDREQFEVIDGEGNPVQFSEDGWHHALASGFPYRLRQKPGDHNALGRYKFYLPNNDAIYLHSTPRKALFEQGARAFSSGCIRVEHADDLAELLLADSRYQPDKVASILKETQTKWLPLTTPIPVFTVYWSSWIDEEGRQQLRNDIYGFDRVSFQSRLL

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Crispr_ID: NZ_CP006579_21

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006579_21

3849502-3849613

Orphan

Consensus_repeat	Method
GGCAAGCCCAGGGACCGAGGCATCCGGGCCCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006579_21

>merge|NZ_CP006579|21|3849502-3849613|CRISPRCasFinder
GGCAAGCCCAGGGACCGAGGCATCCGGGCCCAACCATCACGCTGCGCCCCAATCGGGTTCGCTGATAAAAGCCGCTTGAGGCAAGCCCAGGGGCCGAGGCATCCGGGCCCAA

>NZ_CP006579|21|21|3849502-3849613|CRISPRCasFinder
GGCAAGCCCAGGGACCGAGGCATCCGGGCCCAA	CCATCACGCTGCGCCCCAATCGGGTTCGCTGATAAAAGCCGCTTGA
GGCAAGCCCAGGGGCCGAGGCATCCGGGCCCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006579.1\|WP_025328310.1\|3838231_3839377_+\|acetylornithine-deacetylase	unknown	unknown	gnl\|CDD\|235346
NZ_CP006579.1\|WP_025328327.1\|3858384_3859653_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|273283
NZ_CP006579.1\|WP_025328313.1\|3843968_3845450_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP006579.1\|WP_025328312.1\|3842976_3843555_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025328324.1\|3855305_3856484_-\|cystathionine-gamma-synthase	unknown	unknown	gnl\|CDD\|131135
NZ_CP006579.1\|WP_025328321.1\|3851686_3852088_+\|CidA/LrgA-family-protein	unknown	unknown	gnl\|CDD\|224298
NZ_CP006579.1\|WP_025328323.1\|3852837_3855306_-\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-II	unknown	unknown	gnl\|CDD\|236530
NZ_CP006579.1\|WP_025328309.1\|3836962_3837970_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
NZ_CP006579.1\|WP_025328311.1\|3839593_3842227_+\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NZ_CP006579.1\|WP_025328322.1\|3852080_3852770_+\|LrgB-family-protein	unknown	unknown	gnl\|CDD\|224265
NZ_CP006579.1\|WP_025328320.1\|3850676_3851561_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176129
NZ_CP006579.1\|WP_025328326.1\|3857974_3858313_+\|tRNA-binding-protein	unknown	unknown	gnl\|CDD\|182232
NZ_CP006579.1\|WP_025328318.1\|3847999_3849427_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP006579.1\|WP_025328315.1\|3846207_3846933_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP006579.1\|WP_080675372.1\|3849812_3850673_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025328317.1\|3847389_3847857_-\|OsmC-family-protein	unknown	unknown	gnl\|CDD\|224678
NZ_CP006579.1\|WP_025328325.1\|3857137_3857890_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225117
NZ_CP006579.1\|WP_025328314.1\|3845647_3846118_+\|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl\|CDD\|237976
NZ_CP006579.1\|WP_005327165.1\|3856778_3857102_+\|met-regulon-transcriptional-regulator-MetJ	unknown	unknown	gnl\|CDD\|179982
NZ_CP006579.1\|WP_025328316.1\|3846922_3847372_-\|rhodanese	unknown	unknown	gnl\|CDD\|238779

Protein	Function_ID	Function_description	E-value
NZ_CP006579.1\|WP_025328310.1\|3838231_3839377_+\|acetylornithine-deacetylase	gnl\|CDD\|235346	PRK05111, PRK05111, acetylornithine deacetylase; Provisional.	0
NZ_CP006579.1\|WP_025328327.1\|3858384_3859653_-\|serine/threonine-protein-kinase	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	2.26857e-141
NZ_CP006579.1\|WP_025328313.1\|3843968_3845450_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	6.40696e-58
NZ_CP006579.1\|WP_025328321.1\|3851686_3852088_+\|CidA/LrgA-family-protein	gnl\|CDD\|224298	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only].	9.60169e-29
NZ_CP006579.1\|WP_025328324.1\|3855305_3856484_-\|cystathionine-gamma-synthase	gnl\|CDD\|131135	TIGR02080, Cystathionine_gamma-synthase, O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. [Amino acid biosynthesis, Aspartate family].	0
NZ_CP006579.1\|WP_025328323.1\|3852837_3855306_-\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-II	gnl\|CDD\|236530	PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional.	0
NZ_CP006579.1\|WP_025328309.1\|3836962_3837970_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	1.27437e-167
NZ_CP006579.1\|WP_025328311.1\|3839593_3842227_+\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NZ_CP006579.1\|WP_025328322.1\|3852080_3852770_+\|LrgB-family-protein	gnl\|CDD\|224265	COG1346, LrgB, Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane].	2.09732e-87
NZ_CP006579.1\|WP_025328320.1\|3850676_3851561_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176129	cd08438, PBP2_CidR, The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold. This CD includes the substrate binding domain of CidR which positively up-regulates the expression of cidABC operon in the presence of acetic acid produced by the metabolism of excess glucose. The CidR affects the control of murein hydrolase activity by enhancing cidABC expression in the presence of acetic acid. Thus, up-regulation of cidABC expression results in increased murein hydrolase activity. This substrate binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.81521e-88
NZ_CP006579.1\|WP_025328326.1\|3857974_3858313_+\|tRNA-binding-protein	gnl\|CDD\|182232	PRK10089, PRK10089, chaperone CsaA.	7.46078e-69
NZ_CP006579.1\|WP_025328318.1\|3847999_3849427_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	3.43832e-134
NZ_CP006579.1\|WP_025328315.1\|3846207_3846933_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	6.57316e-20
NZ_CP006579.1\|WP_025328317.1\|3847389_3847857_-\|OsmC-family-protein	gnl\|CDD\|224678	COG1764, osmC, Organic hydroperoxide reductase [Secondary metabolites biosynthesis, transport and catabolism].	1.14255e-19
NZ_CP006579.1\|WP_025328325.1\|3857137_3857890_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.01499e-25
NZ_CP006579.1\|WP_025328314.1\|3845647_3846118_+\|Cys-tRNA(Pro)-deacylase	gnl\|CDD\|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	1.44206e-73
NZ_CP006579.1\|WP_005327165.1\|3856778_3857102_+\|met-regulon-transcriptional-regulator-MetJ	gnl\|CDD\|179982	PRK05264, PRK05264, met regulon transcriptional regulator MetJ.	3.84266e-75
NZ_CP006579.1\|WP_025328316.1\|3846922_3847372_-\|rhodanese	gnl\|CDD\|238779	cd01521, RHOD_PspE2, Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.	1.62653e-47

>NZ_CP006579.1|WP_025328318.1|3847999_3849427_+|PLP-dependent-aminotransferase-family-protein
MTVLPTLFADQQQNDLPLHEQLVRTLREAILAGHLPLHGRLPASRMLARDLGVSRSTVELAYGRLEAEGYLVRKVGAGSFVALAAVRPAPRPPQSAAGLSRRGQEMAQGGACHEVPEVGSSFASSQPDPRLFPQALWGRLMQQQWRQGASDWMNYGDPQGLATLRAAISSYLVQSRGVVCEPEQILILTSSQQGILLATQLLIDAGDTVWVEDPGYPGARTAMESAGARIHPVPVDEEGLNPAGEHPSPRLIYCTPAHQYPLGVPMSLPRRMALLAEAERRGAWILEDDYDGEYQYDQRPLPALQGLDGQGRVLYVGTFSKVLFGSLRLAYLVLPRPLMEAFSRARAAVDGHSNQLQQAVTADFIRAGYFATHLRQSRLLYQSRRDLLLAELAEHCPRLTPIHSGAGLQCAVLLPAGGEARWTEAANARGLGLRPLHQYHLAPPTREGWLLGFGCLDNQTLRQLCRQLGALMESA
>NZ_CP006579.1|WP_025328317.1|3847389_3847857_-|OsmC-family-protein
MSEYSATISWQRGASEPFVDQRYSRAHEWAFDGGVRVPASSSPHVVPLPWSVAEHVDPEEAFVASLSSCHMLTFLWLVARAGYQVESYRDEAVGIMEKNERGRQSITRVTLRPRVRFGGERQPDLAALERLHHQAHEECFIANSVNTVVTTEIAL
>NZ_CP006579.1|WP_025328316.1|3846922_3847372_-|rhodanese
MSHVLSTGVASPLEASAFFEAQLKFRTDPADLAADLLAGEAAEGGSIVVIDTRSPAHYAEGHIPGAISFPHSTMTPATTQGLSRDRVYVCYCDGIGCNGSTQGAYKLAALGFRVKELIGGLHWWRQDGFAVATGSEAGVLLEGGIACAC
>NZ_CP006579.1|WP_025328315.1|3846207_3846933_-|GNAT-family-N-acetyltransferase
MPAEPILNDHGQPLGESLPDWRGAEFPPHRVLSGWGCRLEPLDPERHGGSLWQAFSADSGAMWTYLTSGPFEDEAAMLAWLRGVATRGDPQFYAIVDERSGRALGLASYLRIDPAAGSVEVGWLHFSPALQQSRLATAAMALMMANAFALGYRRYEWKCNALNRPSWQAALRLGFCYEGTFRQARVDKGHSRDTAWFSVIDGEWPALKGCFERWLADANFDEQGRQRLRLSELTAACRVKP
>NZ_CP006579.1|WP_025328314.1|3845647_3846118_+|Cys-tRNA(Pro)-deacylase
MTPAINLLKKLKIPHKLYPYECEAHDDFGKHAATQLGLPQAQVFKTLLAHHDKQAVVAIVPSSGMCSLKQLAKATGLKKVEMMKPADAEKLTGYKVGGISPLAQKKLLPTVLDDSAMGFDEILVSGGKRGLSVGVAPEDMIRLLQWIAAPIGEHHE
>NZ_CP006579.1|WP_025328313.1|3843968_3845450_-|diguanylate-cyclase
MNTPVNSFVDMGTLGRYDALARLTALDRAYGIAEFDLDGRMVSVNELFCGLLGYASEELIGQSHLLLLPPEQQGGQDSFWQGVLSGEIRSGSFRRIMSGGGSVWIHATYMPITNEAGTLLGVIKLAHDITPEVLAEQRVEQQSQLFDIVVAAHQSFLLDRNLGSACDTVFERLLSVSQSAYGFIGIIQYEDERPSLYIPSISNISWDQATHAWYEQQRQSRGGLIFNKLDNLFGHVVTHNTLVCCNDLPSHPASRGVSPRGHPHLDSFLGIPIRHKGEAIGMIALANRPGGFDETLVSLLEPLTTALGTLIHARNLEDERNHMERVLRFNAEHDFLTKLPNRSSFFSQANVLLEHLQRHPAEGEACCLALIDIDFFKQINDEHGHLAGDAVLEELARLLMQAVRSQDLVARFGGEEFIMLLRGTTQEEAHAIMERTRQQIEQHTFSHQHQSMAVTISVGLTPYQTGYRCMDDWLLCVDQRLYEAKRRGRNRIA
>NZ_CP006579.1|WP_025328312.1|3842976_3843555_+|hypothetical-protein
MKKIILTALFSVCVGNAIADENSDIASTVAGVQQASTASDSKWDPTQNVYFNKADIRYVKLINKIGTIPLKVRLDDVADPDTITFAMGDEFVFDWDNGQARFEYTGAGIQMLDLNDGGKSDDLFPDESNGNDFLKYEYGGERQAIVVDMTSGSVSTVNDTDGISGHKNSRLRGYYDPAVTGQDTIFIYLEPM
>NZ_CP006579.1|WP_025328311.1|3839593_3842227_+|phosphoenolpyruvate-carboxylase
MNEKYAALRANVGMLGQLLGKSIKDHQGQAFLDKIETIRQLAKSSRKGNETDRERLLETLRTLSDDELLPVARAFSQFLNLANVAEQFHTISRRCEEQECTPDPLEQMFAKLKASNLSQEAIIQAVRELDIDLVLTAHPTEVTRRTLIHKHVQLNDCLEALELSDLLPRERDKILNRIEQLVNQAWHTNEIREQRPTPVDEAKWGFAVVENSLWPAIPEFMRNLDERLQHHLGVRLPLDAAPVKFTSWMGGDRDGNPFVTAKVTAEVLELGRWMAVNLFYKDIKELTSELSMADCTEALRTRVGDNPEPYRALVRELREALRETQEFLTAKVQGQASESRDLIKTTAQLREPLELCYHSLHACGMGNIADGMLLDVLRKLACFGIHLVKLDIRQDGERHGQVFSELTRYLGMGDYAEWSEDDKQAFLLNELNSRRPLIPTDWAPSDETRETIDTCRVIAGHDPDAFGIYIISMAGAPSDVLAVQLLLKEAGCKFRMPVAPLFETQEDLMAGTAVMDRLLSVDWYRGYIQGRQYVMIGYSDSAKDAGMMAAGWAQYAAMESLVGLAEANNIRLTLFHGRGGTVGRGGAPAHQAILSQPPGSLRGGLRVTEQGEMIRFKFGLPKVAIHSLNLYTSAVLEGNLLPPPKPKECWRAVMEQLATVSCDHYRSIVRGHPDFVPYFRAATPEMELGKLPLGSRPAKRKPNGGVESLRAIPWIFAWTQNRLMLPAWLGAHKGLQQAIDDGQKSVLDEMSRQWPFFRTRLEMLEMVFLKADLWLAEYYDTRLVPQELWALGKQLRQELADSIQVVLELRPQGDLLDDQPWIKESIKLRNPYTDPLNVLQVELLGRSRKNPETLHPELDQALMVTIAGIAAGMRNTG
>NZ_CP006579.1|WP_025328310.1|3838231_3839377_+|acetylornithine-deacetylase
MANLDFFSLYKNIIAIPSISSTDPRWDQSNEAVIRLLADWFGQLGFQCEVTALPDLPGKFNLVATYGQGEGGLLLAGHTDTVPFDEGGWSKDPFKVTEEGNRLYGLGTIDMKGFFAFIVEALKEVDLIKLRKPLRILATADEETTMAGARAIAAAAEIKPDYAVIGEPTGLVPVVAHKGHMSEAIRITGKSGHSSDPANGVNAMEIMHQAMGQVLKLQRDLKERYADHRFAVPQPTLNLGYIQGGDSPNRICGCCELHIDMRPTPQVGPDELMGMLKEALSPIEIHQPGCLHLQHLHEPIPAYACEDGSDLVREAEKASGRAAESVNYCTEAPFIQQLGCQTIVMGPGHITQAHQPDEYLDLSFVKPTTAVLQHLIRRFCV
>NZ_CP006579.1|WP_025328309.1|3836962_3837970_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MLNTVIVGASGYAGAELAALVQNHPELKLFGLYVSAGSQDAHKRFSSLHPQWVGELDQPLLPLDEDGMTRILTQADLVLLATAHEVSAELAPKFLAKGLPVFDLSGAFRVKDQGFYSSFYGFTHESEQWLEQAVYGLAEWNADAIAAAQLIAVPGCYPTASLCALKPLQQAGLIAEGWQPIINAVSGVSGAGRKAAINTSFCEVSLSPYGTFNHRHQPEISHHLGKGVLFQPHLGNYVRGILATIYVQLADGVTQTQVDQAYLKAYEGKPLVRLTGQMPSIRGVANTPYCDLAWQQQGNMLVVVSAIDNLLKGAASQAMQCINIKFGFEPATGLI
>NZ_CP006579.1|WP_080675372.1|3849812_3850673_+|hypothetical-protein
MAATRFTLLSPENEQDARMDYYREAMRLALEKTRQQYGDYELRDSLKMNKARMRLEVQKAGKNALFIVDNWPQKTPHPEVSLIPFPIDLGILGYRVCFVGADRAEALAGVRTLAQLQAFSQGSGKGWQDADILRHNGFQVQEVDNYESLFRMVARGRVDLFCRGANEILAEWETHHPRLPTLTVDRHVALFYPLIHAFYSHATYHKERERIQLGLRLAWQDGSLQRLWRQHFQPSLAFTQLASRQLFRLNNPQQPGEGSDYRSYLYDPARDAFGMPPHDKGGKIGK
>NZ_CP006579.1|WP_025328320.1|3850676_3851561_-|LysR-family-transcriptional-regulator
MDIRALRYFVELVREKSFTRASEKLFVTQPTISKMIRSMEEELGQPLLNREGHSFTLTDSGQVLFARGQLILAQMQQLEAELADLQSLQHGRLALGIPPMVGHVYADLIRAYRSRYPKVELSIVEYGGRRIEQAVLEGELDLAITMLPTKEEGALSTLELDRYPIQVVLPDLPRWRACAEIRLEDLQEEPFLLYTQAFTLSERLEQACQQAGFTPQVAARSSQWDFLTAMVRSGMGVAFLPEPICRRLTPDGLVLRPLLPELSWRLGVIWPSRRYLSRTAEAWLALCREQGERG
>NZ_CP006579.1|WP_025328321.1|3851686_3852088_+|CidA/LrgA-family-protein
MKAFCLRWLQTPFQIALLAAIWLLADTAVRTFHLPLPANLTGMLALLVLILLGVVKAQWFSAGARWLLAEMLLFFVPAVVAVVNYQDLLLQEGGRIMLVLLISTTLVLGTTALVVDRVYRLELKLARRSRRHV
>NZ_CP006579.1|WP_025328322.1|3852080_3852770_+|LrgB-family-protein
MSDTLLGLLCFALTLLFYYASKWLYGKKRILPLMPLLLAPALLVAVVVLFHIPYQDYMAESHWLLWLLGPATVAFAVPVYENRELMRRHWLSLSVGVVASVVMAVGSTVLLARWLNLSELLQRSMAMRSITTPFAVEATRSVGGNADLTALFVVLTGVIGMAVGESVLTVLAIRSRLGKGAGFGASAHGAGTARAYQMGNEEGVVSSMVMMIAGMATVLLAPLLGKLFW
>NZ_CP006579.1|WP_025328323.1|3852837_3855306_-|bifunctional-aspartate-kinase/homoserine-dehydrogenase-II
MEQQQQGESAVAAERALKRRHVHKFGGSSLADPVCYRRVASILEQQAEQQGGGRELVVVSAAGKTTNRLIQLVELAEAGDEAAGEAITALHAYQQSLIDGLLEGELLLDLSKQLTDDMQQIAKTLEGQFDRFERNGLLAFGEVWSARLLAALLSSRGDKAIWLDARSFLRAEDGALVKVDAAISGELLKARLAEHPGRIVVTGFIAADMEGRSLLLGRNGSDYSASLLAALADGESTTIWSDVAGVYSADPRRVKEARLLERLSLAEANELARLGSSVLHSRTLQPVADSRQRLTLRCSYNPDEGCTHILRRAPRSGGARIVSSVDQIALIELKVLPQTGYEQTVAAIEAHLARHRLNPLTLQRQPDRRVLRLAYTLEVAQGAFEILRDFQLQGSFTGLIQKEGFSLVALVGAGVTDNAEQCHRFYQLLADQPLEFVQVARDGLSLVAVVRQVVLEPLLIALHSALFSRPTRVGLVVFGKGNIGGHWLALYAREKARLEHELNLALTLYGVFSSEGGLLDEEGLDPLKVRDNFNPRPLIWPELLSQLEQHGFDALIALDMTASETVSRYYPDFAQLGCHIIAANKFAGAADSEFYQRIKQSCRDHQVQWRYNATVGAGLPIQSSIQMLRQSGDRIQGVSGIFSGTLSWLFQQYDGTRPFSELVDEAWQHGLTEPDPREDLSGQDVRRKLLILAREAGFELDSADIELENLVPVSLRKVSTDQFMDRLKDLDDPIQTAFEGARRVGKVLRYVARFEHDGKARVGLETLEPHHPFANLLPCDNVFAIESDSYRTNPLVIQGPGAGREVTAAAIQYDLWQICASL
>NZ_CP006579.1|WP_025328324.1|3855305_3856484_-|cystathionine-gamma-synthase
MSHKATLAVRTGIETDTQHGAVVPPIYLSSNYTFADFGEPRQYDYARSGNPTRTNLADALAALEGGAGAVVTGTGMGAVHLVTTALLKAGDLLIAPHDCYGGTWRLFEYLAAKGHYRVQFVDQGDEAALAEALAQQPALVWVETPSNPLLRVVDVAAIAAASHEVGAKVVVDNTFLSPLLQQPLALGADVVVHSTTKYINGHSDVVGGVAIAKEQTLADSLVWWANCLGLTSGAFDSYLTLRGLRTLAPRLRAHQENTDRILAFLQQQPLVKKIYHPSLPSHPGHEIARRQQSGFGAMLSFELDCNETGLRAFLAALRLFSVAESLGGVESLVAHPASMTHRAMTPAAQQAAGISAQLLRLSVGIEHGEDLVADLAQGFEQAQLAQQAEQVK
>NZ_CP006579.1|WP_005327165.1|3856778_3857102_+|met-regulon-transcriptional-regulator-MetJ
MGTEWNGDYVSPYAEHGKKSEQVKKITVSIPLKVLKVLTDERTRRQVNNLRHATNSELLCEAFLHAFTGQPLPCDDDLRKDHPDSVPAEARAIMEALGKEIEDFDAE
>NZ_CP006579.1|WP_025328325.1|3857137_3857890_+|helix-turn-helix-domain-containing-protein
MTRPGAASSLSAPCPFSLRHYQSDISSHSHDFAQLVIPLDGPLEIEVQGQGRRLAPGFACVIAPGERHDYAADPALSFLVQESHWLPAPLGERPFIPLDEPQRHYLAFLHQMVRQGRHVVGMEQIWLSLLAQGQGQGIGPTLAPRMTRVQRHIEAHLAEPLGNGRLAAVACLGQSQFKHTFRQQFGMSASHYIRGRRMALARTLLAHSALPIGEVASRCGYQDQGAFAERFLAETGLTPSRWRQQNGPQP
>NZ_CP006579.1|WP_025328326.1|3857974_3858313_+|tRNA-binding-protein
MQTISWQQFEMVELRVGTLVRVEPFPEARKPAYKVWADFGPDLGVRKSSAQITDLYQPEDLVGRQIVAVVNFPAKQIGPIQSEFLLTGFYRADGAVVMAIPEQAVENGAKLG
>NZ_CP006579.1|WP_025328327.1|3858384_3859653_-|serine/threonine-protein-kinase
MSSSAEVSRELSGSHSTTASTGWRRHDTHWVISLFGTAVGAGILFLPINLGLGGIWPLVIVAVLAGPMTFLAHRGLARFVLSSSRPYADFTEVAEEHFGKMAGRLISALYFLSIFPILLIYGVGLTNTVESFMINQLGMDAPNRVMLSGLLVFAMIAVMMAGEKAMLRAFAFMVYPLAAILAALSCYLIPQWHWPEATAFEGTSFLNTVWLALPVTVFAFSHAAAISGFANVQRREYGEQAEAKSGLILRNTTVMLVGFVLFFVFSCVLSLSPAQLAEAKAQNVSVLSYLANITDNPVIVTLGPLIAFIAISSSFLGHFLGARESLKSLIAKPTGLPLAKADKLGIALMFFAIWGAAVINPGILGLMETLSGPVIAMILFIMPVVAIYKVEALARFRQGWVNGFILLTGSLSVSALVFSLLK

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Crispr_ID: NZ_CP006579_22

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006579_22

3871173-3871274

Orphan

Consensus_repeat	Method
CAGCATCTCAAGCAGGGTAAAGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006579_22

>merge|NZ_CP006579|22|3871173-3871274|CRISPRCasFinder
CAGCATCTCAAGCAGGGTAAAGCCGGCCTGGCGGACAGAGCGTCGGCCTGAGGTCACCGACATGGGCGATGGCCGCAGCAACATCTCAAGCAGGGTAAAGCC

>NZ_CP006579|22|22|3871173-3871274|CRISPRCasFinder
CAGCATCTCAAGCAGGGTAAAGCC	GGCCTGGCGGACAGAGCGTCGGCCTGAGGTCACCGACATGGGCGATGGCCGCAG
CAACATCTCAAGCAGGGTAAAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006579.1\|WP_025328332.1\|3863689_3864595_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP006579.1\|WP_025328345.1\|3875601_3877659_-\|GspD-family-T2SS-secretin-variant-ExeD	unknown	unknown	gnl\|CDD\|274175
NZ_CP006579.1\|WP_025328341.1\|3871722_3872274_-\|GspH-family-T2SS-minor-pseudopilin-variant-ExeH	unknown	unknown	gnl\|CDD\|130769
NZ_CP006579.1\|WP_025328335.1\|3866930_3867689_-\|GspN-family-type-II-secretion-system-protein-ExeN	unknown	unknown	gnl\|CDD\|376490
NZ_CP006579.1\|WP_025328331.1\|3862465_3863572_-\|NADH:flavin-oxidoreductase	unknown	unknown	gnl\|CDD\|239201
NZ_CP006579.1\|WP_025328347.1\|3878749_3879148_+\|ribosome-associated-heat-shock-protein-Hsp15	unknown	unknown	gnl\|CDD\|182397
NZ_CP006579.1\|WP_025328344.1\|3874096_3875602_-\|GspE-family-T2SS-ATPase-variant-ExeE	unknown	unknown	gnl\|CDD\|131585
NZ_CP006579.1\|WP_025328334.1\|3866000_3866882_+\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP006579.1\|WP_025328342.1\|3872309_3872741_-\|GspG-family-T2SS-major-pseudopilin-variant-ExeG	unknown	unknown	gnl\|CDD\|130771
NZ_CP006579.1\|WP_025328330.1\|3861674_3862343_+\|GMP/IMP-nucleotidase	unknown	unknown	gnl\|CDD\|237882
NZ_CP006579.1\|WP_025328336.1\|3867786_3868278_-\|GspM-family-type-II-secretion-system-protein-ExeM	unknown	unknown	gnl\|CDD\|377391
NZ_CP006579.1\|WP_025328349.1\|3880287_3881913_+\|phosphoenolpyruvate-carboxykinase-(ATP)	unknown	unknown	gnl\|CDD\|236471
NZ_CP006579.1\|WP_025328343.1\|3872874_3874095_-\|GspF-family-T2SS-innner-membrane-protein-variant-ExeF	unknown	unknown	gnl\|CDD\|273980
NZ_CP006579.1\|WP_025328338.1\|3869575_3870601_-\|GspK-family-T2SS-minor-pseudopilin-variant-ExeK	unknown	unknown	gnl\|CDD\|377165
NZ_CP006579.1\|WP_025328333.1\|3864589_3865855_-\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP006579.1\|WP_025328329.1\|3860919_3861528_-\|ADP-compounds-hydrolase-NudE	unknown	unknown	gnl\|CDD\|183303
NZ_CP006579.1\|WP_025328340.1\|3871306_3871651_-\|GspI-family-T2SS-minor-pseudopilin-variant-ExeI	unknown	unknown	gnl\|CDD\|376798
NZ_CP006579.1\|WP_025328348.1\|3879253_3880138_+\|Hsp33-family-molecular-chaperone-HslO	unknown	unknown	gnl\|CDD\|234643
NZ_CP006579.1\|WP_025328337.1\|3868274_3869459_-\|GspL-family-type-II-secretion-system-protein-ExeL	unknown	unknown	gnl\|CDD\|273768
NZ_CP006579.1\|WP_080675374.1\|3877680_3878610_-\|GspC-family-type-II-secretion-system-variant-ExeC	unknown	unknown	gnl\|CDD\|273770

Protein	Function_ID	Function_description	E-value
NZ_CP006579.1\|WP_025328332.1\|3863689_3864595_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.77033e-53
NZ_CP006579.1\|WP_025328345.1\|3875601_3877659_-\|GspD-family-T2SS-secretin-variant-ExeD	gnl\|CDD\|274175	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D. In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP006579.1\|WP_025328341.1\|3871722_3872274_-\|GspH-family-T2SS-minor-pseudopilin-variant-ExeH	gnl\|CDD\|130769	TIGR01708, Type_II_secretion_system_protein_H, type II secretion system protein H. This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	3.59966e-42
NZ_CP006579.1\|WP_025328335.1\|3866930_3867689_-\|GspN-family-type-II-secretion-system-protein-ExeN	gnl\|CDD\|376490	pfam01203, T2SSN, Type II secretion system (T2SS), protein N. Members of the T2SN family are involved in the Type II protein secretion system. The precise function of these proteins is unknown.	5.8749e-53
NZ_CP006579.1\|WP_025328331.1\|3862465_3863572_-\|NADH:flavin-oxidoreductase	gnl\|CDD\|239201	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	3.43968e-95
NZ_CP006579.1\|WP_025328347.1\|3878749_3879148_+\|ribosome-associated-heat-shock-protein-Hsp15	gnl\|CDD\|182397	PRK10348, PRK10348, ribosome-associated heat shock protein Hsp15; Provisional.	3.44925e-44
NZ_CP006579.1\|WP_025328344.1\|3874096_3875602_-\|GspE-family-T2SS-ATPase-variant-ExeE	gnl\|CDD\|131585	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP006579.1\|WP_025328334.1\|3866000_3866882_+\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	7.09922e-16
NZ_CP006579.1\|WP_025328342.1\|3872309_3872741_-\|GspG-family-T2SS-major-pseudopilin-variant-ExeG	gnl\|CDD\|130771	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	2.44337e-63
NZ_CP006579.1\|WP_025328330.1\|3861674_3862343_+\|GMP/IMP-nucleotidase	gnl\|CDD\|237882	PRK14988, PRK14988, GMP/IMP nucleotidase; Provisional.	4.85917e-95
NZ_CP006579.1\|WP_025328336.1\|3867786_3868278_-\|GspM-family-type-II-secretion-system-protein-ExeM	gnl\|CDD\|377391	pfam04612, T2SSM, Type II secretion system (T2SS), protein M. This family of membrane proteins consists of Type II secretion system protein M sequences from several Gram-negative (diderm) bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the T2SM (EpsM) protein interacts with the T2SL (EpsL) protein, and also forms homodimers.	6.58303e-49
NZ_CP006579.1\|WP_025328349.1\|3880287_3881913_+\|phosphoenolpyruvate-carboxykinase-(ATP)	gnl\|CDD\|236471	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase.	0
NZ_CP006579.1\|WP_025328343.1\|3872874_3874095_-\|GspF-family-T2SS-innner-membrane-protein-variant-ExeF	gnl\|CDD\|273980	TIGR02120, Putative_general_secretion_pathway_protein_F, type II secretion system protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP006579.1\|WP_025328338.1\|3869575_3870601_-\|GspK-family-T2SS-minor-pseudopilin-variant-ExeK	gnl\|CDD\|377165	pfam03934, T2SSK, Type II secretion system (T2SS), protein K. Members of this family are involved in the Type II protein secretion system. The T2SK family includes proteins such as ExeK, PulK, OutX and XcpX.	4.0946e-98
NZ_CP006579.1\|WP_025328333.1\|3864589_3865855_-\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP006579.1\|WP_025328329.1\|3860919_3861528_-\|ADP-compounds-hydrolase-NudE	gnl\|CDD\|183303	PRK11762, nudE, adenosine nucleotide hydrolase NudE; Provisional.	1.97573e-120
NZ_CP006579.1\|WP_025328340.1\|3871306_3871651_-\|GspI-family-T2SS-minor-pseudopilin-variant-ExeI	gnl\|CDD\|376798	pfam02501, T2SSI, Type II secretion system (T2SS), protein I. The Type II secretion system, also called Secretion-dependent pathway (SDP), is responsible for the transport of proteins across the outer membrane first exported to the periplasm by the Sec or Tat translocon in Gram-negative (diderm) bacteria. As members of the T2SJ family, members of the T2SI family are pseudopilins containing prepilin signal sequences.	2.6809e-29
NZ_CP006579.1\|WP_025328348.1\|3879253_3880138_+\|Hsp33-family-molecular-chaperone-HslO	gnl\|CDD\|234643	PRK00114, hslO, Hsp33 family molecular chaperone HslO.	1.49213e-132
NZ_CP006579.1\|WP_025328337.1\|3868274_3869459_-\|GspL-family-type-II-secretion-system-protein-ExeL	gnl\|CDD\|273768	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L. This model represents GspL, protein L of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	3.34677e-83
NZ_CP006579.1\|WP_080675374.1\|3877680_3878610_-\|GspC-family-type-II-secretion-system-variant-ExeC	gnl\|CDD\|273770	TIGR01713, Type_II_secretion_system_protein_C, type II secretion system protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	4.64283e-65

>NZ_CP006579.1|WP_025328338.1|3869575_3870601_-|GspK-family-T2SS-minor-pseudopilin-variant-ExeK
MAIKRCRGSSRTTPGQQGGMALLVVLLILSVMVIIASNMSGRLQLELRRTSNLTMGKQAWWYAMSAEALVIKVLNQDFKDDPDVVNLGQNWARQDAVFPVDDGTLSGRVRDLQSCFNLNSLSLALKEGESGDDLDAQPYQFKAFRALLEALEVDEYEAVQLTDAIRDWTDKDTQLVSSNGAEDAYYEGLNPPYLVANQWLLGTDELRALRGVSSELYARLAPYVCTLPSDKLVVNINTIKPEQAALLVGLYQGKIGLDDAKRVLTNRPKKGWKEKKEMTDELSVQPGSITGLDGALDIKSSFFEARLLAEVGDVRARLETVFQRGKDNKLVMLRRLNDGAE
>NZ_CP006579.1|WP_025328337.1|3868274_3869459_-|GspL-family-type-II-secretion-system-protein-ExeL
MSESLVIRLGTNAQQPVHWLVWSTQEQEIIASGTLASAHALGELQERAGGRPVVTLVPGSDLIFRRVSLPGKYSRQAAAALPYLLEEQIASDVDELHLVVLGHQGQDVDLMAVDKAKMQEWLAWLQQAGLKTLQLLPDVLALPPAAEGWSALQLGAEWLIRQDPVQGIVADEPLLAMLLAAQPEPVTIHSHTPAPAIAAANWQAADPELPMLLLAKGALTCQANLLQGPYRPQTEYGRYWLQWRKVAVLAGILLLVALAQRGVQLYQLAEQDKALKAEIRQVYTRIFPGETRIVNVRSQMSQHLKSLGQAPQGGVLLLLTELAPVFAEVPGLKPEVLRFDAARGELRLQVTAPGFTEIERFRELAGKRFEVQQGEVRSTEGKVEGALVLKGKSS
>NZ_CP006579.1|WP_025328336.1|3867786_3868278_-|GspM-family-type-II-secretion-system-protein-ExeM
MMDKLQAWWRGISPREQRLVAVGGCALLIGLCYWVIWQPVANRIDERQRQVVNQQQTLAWLKEKGQEVLAMQGGQGRQIDTSGTLDGVVNRTAFNQKIKIARLQPQGQELQVWIDTVPFEDLLLWLATLSDQYGVQVQIIEVAREGLAPGLVKVRRLQLSRPQ
>NZ_CP006579.1|WP_025328335.1|3866930_3867689_-|GspN-family-type-II-secretion-system-protein-ExeN
MKQKVLIAALFLVAYLGFLLVTLPATLVVRHLPLPPNLVQLEGVSGTLWSGQIARLQYASESLTQLRWELDGWSLLRLAPEVSVRFGDRAGLNGQGVIGWNGAAFGRDITLNAPAPWVLARVPMGLPFPLTTAGQLQLKVDQFAQGKPWCEELYGNLNWYGAEADTPAGKLLLGDPELKLTCLDSRLVAELKQGSEAVQVQGKLELQANRQYLFQGTLKPGPELPDQMKQGLPFLGQPDGQGRFPLRYQGRI
>NZ_CP006579.1|WP_025328334.1|3866000_3866882_+|LuxR-family-transcriptional-regulator
MSQSLATDSLTQSLTAAVDALHSPAFAAALVRLIQQQVAFDCALLLGVGPRPLYLYDNLSHQRALLFDRYLTSHFSQDPFMQALEQGLEAGVWTLAQVSKGRLDPEYRHHFYQATGWQEEVGLILPVRDGLTLMLFLGRLDKRQSLRPEERARLEALFPLVHSLCRQQWRQSQPLLAQSAATRATDGEAKSAVQGAPASLDGASLKAAVEQAMTSVGGDRLTRRERQVASLLLQGLDTEAIAAELGIGSGTVKNHRKHLYGKLRLGSRAELFSLFLNHLITRPLSGAPETPAP
>NZ_CP006579.1|WP_025328333.1|3864589_3865855_-|tyrosine--tRNA-ligase
MIDPHLLTDLTERGLVAQMSDPAALASHLATARTLYCGFDPTAGSLHIGHLVPLLMLRRFQLAGHTPVALVGGATGLIGDPSFKATERSLNSADTVQGWVASLSAQIRALLPASEGLAAPVLVNNADWMGQMSALDFLRDIGKHFSVNAMLARESVRQRLARPDQGISFTEFSYALLQSQDFAVLNQRLGCTLQIGGNDQWGNITSGMDLTRRLHQTQVHGMTLPLITKADGTKFGKTEGGAIWLDPALTSPYAFHQFWLGTADEDVYRFLRYYSFMPLAEIAALEAEDAGRQGRKLAQQVLADELTELVHGKGALAAARRIGELLFCGDVARLGESDLAQLAQDGMPSCRIEGQTDLVTLLVASGLASSKRVARELLGAGAISLNGAIKQDEQLSAEDRLFGRYLLLRRGKKQYHLVICS
>NZ_CP006579.1|WP_025328332.1|3863689_3864595_+|LysR-family-transcriptional-regulator
MSHHKLDTLYLMRLLVAIVRCGSFAAAAALLGITPSKASKDLRHLEQSLGSTLLSRTTRRIQLTDAGELAYRQADQMIALHEQLLDGLQRRRSALCGELRITAPDLWGEVVLTPVLLRFRADHPEVRLIADFSNRSADLLRDNLHVAFRSTELGSQPYLARPIAVDDLVLCASTSYLEAQPPLTTPQDLHQHSLITRSQEYSRHERWILLNQGREIPVEVAGELAFSSKRAIHEAMRQGLGITLLPRYLVAAELAEGRVREVLPTYRPKGAHFYALYTQRRAESALVGHFLDYVIEALTAS
>NZ_CP006579.1|WP_025328331.1|3862465_3863572_-|NADH:flavin-oxidoreductase
MNKALGDSFHFERAGLRLKNRAVLAPLTHNMSGAGGDPAQAELDWLARCARGGFGLLIAAATQVQPGGRCWAGQPALMTDAQQQAFTALADSARQAGALAVVQLHHGGLRALPELNDGAPVGPCELAPGGRYPLGVKGLTEEGILTLIEAFVRAAERAQAAGLHGVELHGAHNFLLCNFLNPLHNGRTDRWGGSLANRARILVEIVRGIRARLPRDFLVGVRLSPESYAHIQGIELPHQLAVARLLADEGIDYLHFSMGDSFKVVAGDPDGGALLEAVRVGLGGRVPLMVAGKISDGASAGRALCGGADLVAVGTAALGNPDWMERVSRGQPLHAAPFTAARLTEVGFTPSALDYLAGMGVLAPRDAA
>NZ_CP006579.1|WP_025328330.1|3861674_3862343_+|GMP/IMP-nucleotidase
MPTPLPWHQIDTVLLDMDGTLIDLHFDSHLWQQLVPERYAARLGLPLADAKAQIEARYQAVSGTLDWYCVDYWSQTLGLDIRALKQEILEKIQWRPNVIPFLAALRAAGKQLVLFTNAHPASLSVKDARLGLAGHLDLMVSTHELGWSKESQHCWQALAARLAFDPARTLFVDDSERILAASAEFGIAHQLGIRHPDSQMPPLTFQHFPALDDYADLLPLGA
>NZ_CP006579.1|WP_025328329.1|3860919_3861528_-|ADP-compounds-hydrolase-NudE
MSDPHKCKPEHIRVEAMAHDKRKPEIIKAELVAESRLFKVESLHLKFSNGEERVYERMRGGNRGAVMVVPLFDAHTLLLVREYAAGTHSYELGFPKGLIDPGEDAFEAGNRELMEEAGFGARDLVPLKQVSLAPGYFSSRMDILLARDLYPEQRIGDEPEPLEVIPWPLNRIDELLARPDFTESRSISALLLASKWLAEQES
>NZ_CP006579.1|WP_025328340.1|3871306_3871651_-|GspI-family-T2SS-minor-pseudopilin-variant-ExeI
MTLLEVMVALAVFAIAGLAVMKTASEHLSGLNYLEQKTLATWVVENQLVQQKLEGKWPGDSWVEGDEEMAGQTWYWRYRGVATSDSNFKALDVEVRTAPKAESPVAMMRTYISR
>NZ_CP006579.1|WP_025328341.1|3871722_3872274_-|GspH-family-T2SS-minor-pseudopilin-variant-ExeH
MRRHRQAGFTLLEVLLVAMLMGLVATAVVLSMGGARGDRELDKQARRLMATLQQAQEYSVMDGRLLGLRIEENGWQFMSRAAKDRKWQALTGDKLLGPVQLPEGITLAVELEGFSWRTESDEKSEQGRDEKERTPQIFIFPGGELTPFVLTLSQQDEDLSYLRTLKGDEFGRLSLQEDEEEEE
>NZ_CP006579.1|WP_025328342.1|3872309_3872741_-|GspG-family-T2SS-major-pseudopilin-variant-ExeG
MQKRRQSGFTLLEVMVVIVILGILASLVVPNLMGNKEKADQQKAVSDIVALENALDMYKLDNNRYPTTEQGLDALVNKPTASPEPRSYREGGYIKRLPQDPWGNQYQLLSPGQFGKIDIFSMGLDGEAGTDDDIGNWNLKDFQ
>NZ_CP006579.1|WP_025328343.1|3872874_3874095_-|GspF-family-T2SS-innner-membrane-protein-variant-ExeF
MAAFEYKALDPRGRQKSGVMEGDSARQVRQLLREQGLTPLEVNETTEKAKREANRFVLFRRGASTSELALITRQLATLVGAGLTIEEALKAVAEQCEKAHLRSLVATVRSKVVEGYSLADSLGAFPHVFDQLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRTKLLQAMIYPIVLTLVAVGVISILLTAVVPKVVAQFEHMGQQLPATTRFLIGTSELMQHYGLWFLLLLLVGGFVWRWWLTDAGRRRHWHQVVLRLPVIGRVSRGLNTARFARTLSILNASAVPLLEGMKISGEVLSNDFARHRIGEATERVREGTSLRKALDETKIFPPMMLHMIASGEQSGELDSMLERAADNQDREFETQVNIALGVFEPMLVVSMAGVVLFIVMSILQPILELNNMVNL
>NZ_CP006579.1|WP_025328344.1|3874096_3875602_-|GspE-family-T2SS-ATPase-variant-ExeE
MASYSLDGVAQPAALPELPFAFARNFGVILTERQGAPVLLCRQGVTPQTLLEVRRVAGCAFAVEQLGHDEFETLLMAHYQRDSSEARQLMEDLGNEMDFFALAEELPQSEDLLDADDDAPIIRLINAMLSEAIKEEASDIHIETFERALVIRFRIDGVLREILRPHRKLASLLVSRIKVMSRMDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSYGERVVLRLLDKNNVRLELKQLGMTLANRNIISELIRKPHGIILVTGPTGSGKSTTLYAALSEINSRDRNILTVEDPIEYDLEGVGQTQVNTKVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAIGAITRMRDMGIEPFLLSSSLLAVLAQRLVRTLCPDCRAPHPISEQERIAMGIELAPDQQMWRPVGCEQCNHTGYRGRTGIHELVVIDEAVREAIHSASGELAIERLIRGHTPSIRRDGIDKVLQGQTSLEEVLRVTRED
>NZ_CP006579.1|WP_025328345.1|3875601_3877659_-|GspD-family-T2SS-secretin-variant-ExeD
MINKGKGWRLATVAAALMMAGSAWATEYSASFKNADIEEFINTVGKNLNKTIIIEPSVRGKINVRSYDLLNEDQYYQFFLSVLDVYGFAVVPMNNGVLKVVRSKDAKTSAIPVVDDSNPGVGDEMVTRVVPVRNVSVRELAPLLRQLNDNAGGGNVVHYEPSNVLLITGRAAVVNRLVEVVRRVDKAGDQDMDVIKLKFASAGEMVRLVTNLNKDGNNQGANASLLLSPKVVADERTNSVVISGEPQARARIIQMVRQLDRDLQSQGNTRVFYLKYGKAKDLVDVLKGVSTSIAADKKGGTGTAATGGGASIGGGQLAISADETTNALVITAQPDVMAELEQVIAKLDIRRAQVLVEAIIVEIQDGDGLNLGVQWGNANGGGTQFTDTGLPIGPAIIAGKDYKDNGNTEGLENLLGSFSGMAAGFYKGDWAMLVTALSTNTKNDILSTPSIVTMDNKEASFNVGQEVPVQSGSQSSTTSDQVFNTIERKTVGTKLVVTPQINEGDSVLLNIEQEVSSVAQTQAAGTANLGPTFDTRTVKNAVLVKSGETVVLGGLMDEQTKEKVSKVPLLGDIPVLGYLFRSTSNTTAKRNLMVFIRPTILRDANVYSGVSSNKYTLFRAEQLDRAAEEGYATSPPRQVLPAYGQDVMLSPEVQKQIDLMRAQQQSTATGARTQVQGQPFVQGQP
>NZ_CP006579.1|WP_080675374.1|3877680_3878610_-|GspC-family-type-II-secretion-system-variant-ExeC
MPYTIANRFGCQNILIKMTLPFRDDLLSSLLARCKSVPLSRFSQPLFWLLLLLLAQQCAVLTWRLFELAQPSRSVPWQPSVTSAQGSGGNRLDIANLSRLSLFGKAPQPKGDKVADAVAADAPKTQLNAQLNGVLASTEPSKSIAIIAHNGLQNSYGIGDYIDGTQARIRQVFADRVIIARDGRDETLMLDGEEYGKPLPKVTRQGAELSSVRSELMSNPGKITDYLNISPVRVDGRMVGYRLNPGSNPEVFNQLGLVANDLAVSINGLDLRDNAQAMQAMQQVAGATEMTVTVERQGQLYDVYVGLSE
>NZ_CP006579.1|WP_025328347.1|3878749_3879148_+|ribosome-associated-heat-shock-protein-Hsp15
MSNPAQNSTQVRLDKWLWAARFYKTRSLARDQIDGGKVHYNGQRSKPGKAVEVGALVRFWQGQDEREVRVLEVSEQRKAAPLAQLLYEETEESLKKRAQNSEARRFNSQFAPSPERRPDKQERRQLIKVKQY
>NZ_CP006579.1|WP_025328348.1|3879253_3880138_+|Hsp33-family-molecular-chaperone-HslO
MSNQDLLYRYLFEEYEVRGELVQLDSTYRHIVDAQNYPVQVQKLLGELLVATSLLTATLKFEGSITVQLQGDGPVRLAVINGDHNQQLRGVARYEGELPTDDKLQSLIGNGQLVITITPEEGERYQGIIALEADTLAACLEQYFAQSEQLATKLWIRTGHHQGQPRAAGILLQELPAQSEDHGADFDHLIQLTSTIKDEELFGLEAEEILYRLYHQDKVRVFDPQAIEFRCTCSRARCEGALLQIEKEEAVAMVQELGKIDMHCDYCGAHYQFDGIDIETLFSGAPGNDANKLH
>NZ_CP006579.1|WP_025328349.1|3880287_3881913_+|phosphoenolpyruvate-carboxykinase-(ATP)
MTIVVEPTLAQQLKLDQYGIKNSQEIVRNPSYEQLFAEETRPDLEGFERGVVTELGAVNVNTGIFTGRSPKDKYIVKDGTTQDTVWWSDQGKNDNKAITPEVWSHLKFLVTKQLSGKRLFVVDGYCGANPDTRLAVRIITEVAWQAHFVKNMFIRPSEEELKTFKPDFVVMNGAKCTNPNWKEQGLNSENFVAFNMTEKMQLIGGTWYGGEMKKGMFSMMNYFLPLRGIASMHCSANVGKDGDVAIFFGLSGTGKTTLSTDPKRQLIGDDEHGWDDHGVFNFEGGCYAKTIKLSKEAEPDIYNAIRRDALLENVTVAADGTIDFDDGSKTENTRVSYPIYHIENIVKPVSKAGHANKVIFLTADAFGVLPPVAKLTKEQTKYHFLSGFTAKLAGTERGITEPTPTFSSCFGAAFLSLHPTKYGQELVKRMEASGAEAYLVNTGWNGTGKRISIKDTRAIIDAILDGSIEQAPTKVLPIFNLEVPTALPGVNPAILDPRDTYADKAEWDAKAVDLAGRFIKNFERFTDNDEGKRLVAAGPQL

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Crispr_ID: NZ_CP006579_23

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006579_23

4359542-4359650

Orphan

Consensus_repeat	Method
ACTGGGGTCAGCCAGTTCCATTTGTCCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006579_23

>merge|NZ_CP006579|23|4359542-4359650|CRISPRCasFinder
ACTGGGGTCAGCCAGTTCCATTTGTCCTCGGTCTGGCCGTTGCATGGGGGCAAATGCTGCCCCCGCTGATTCAATCGTTAACTGGGGTCAACCAGTTCCATTTGTCCTC

>NZ_CP006579|23|23|4359542-4359650|CRISPRCasFinder
ACTGGGGTCAGCCAGTTCCATTTGTCCTC	GGTCTGGCCGTTGCATGGGGGCAAATGCTGCCCCCGCTGATTCAATCGTTA
ACTGGGGTCAACCAGTTCCATTTGTCCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006579.1\|WP_025328749.1\|4362873_4364391_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	unknown	unknown	gnl\|CDD\|223679
NZ_CP006579.1\|WP_025328740.1\|4350264_4351698_-\|DUF2867-domain-containing-protein	unknown	unknown	gnl\|CDD\|187556
NZ_CP006579.1\|WP_025328737.1\|4347204_4348530_+\|two-component-system-sensor-histidine-kinase-RstB	unknown	unknown	gnl\|CDD\|236724
NZ_CP006579.1\|WP_025328755.1\|4368365_4369544_+\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235406
NZ_CP006579.1\|WP_025328756.1\|4369617_4370226_-\|thiol:disulfide-interchange-protein-DsbA/DsbL	unknown	unknown	gnl\|CDD\|239317
NZ_CP006579.1\|WP_025328741.1\|4351814_4352030_-\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|376487
NZ_CP006579.1\|WP_025328745.1\|4357541_4359383_-\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|237104
NZ_CP006579.1\|WP_025328742.1\|4352177_4354385_+\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514
NZ_CP006579.1\|WP_025328743.1\|4354543_4355671_-\|porin-OmpA	unknown	unknown	gnl\|CDD\|236764
NZ_CP006579.1\|WP_025328736.1\|4346377_4347085_+\|two-component-system-response-regulator-RstA	unknown	unknown	gnl\|CDD\|236738
NZ_CP006579.1\|WP_025328748.1\|4360843_4362490_-\|acetolactate-synthase-2-catalytic-subunit	unknown	unknown	gnl\|CDD\|181601
NZ_CP006579.1\|WP_025328738.1\|4348584_4348764_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006579.1\|WP_025328754.1\|4367649_4368285_+\|nicotinamidase	unknown	unknown	gnl\|CDD\|238493
NZ_CP006579.1\|WP_025328750.1\|4364512_4365412_+\|acyltransferase	unknown	unknown	gnl\|CDD\|237584
NZ_CP006579.1\|WP_025328751.1\|4365421_4366381_+\|acyltransferase	unknown	unknown	gnl\|CDD\|237584
NZ_CP006579.1\|WP_025328744.1\|4355907_4357440_-\|threonine-ammonia-lyase,-biosynthetic	unknown	unknown	gnl\|CDD\|236417
NZ_CP006579.1\|WP_025328739.1\|4348829_4350086_-\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|235976
NZ_CP006579.1\|WP_025328752.1\|4366311_4366812_-\|DUF523-domain-containing-protein	unknown	unknown	gnl\|CDD\|377367
NZ_CP006579.1\|WP_025328753.1\|4366924_4367575_-\|DNA-mismatch-repair-protein-MutT	unknown	unknown	gnl\|CDD\|226596
NZ_CP006579.1\|WP_025328747.1\|4360568_4360847_-\|acetolactate-synthase-2-small-subunit	unknown	unknown	gnl\|CDD\|236862

Protein	Function_ID	Function_description	E-value
NZ_CP006579.1\|WP_025328749.1\|4362873_4364391_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP006579.1\|WP_025328740.1\|4350264_4351698_-\|DUF2867-domain-containing-protein	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.035e-108
NZ_CP006579.1\|WP_025328737.1\|4347204_4348530_+\|two-component-system-sensor-histidine-kinase-RstB	gnl\|CDD\|236724	PRK10604, PRK10604, sensor protein RstB; Provisional.	0
NZ_CP006579.1\|WP_025328755.1\|4368365_4369544_+\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|235406	PRK05321, PRK05321, nicotinate phosphoribosyltransferase; Provisional.	0
NZ_CP006579.1\|WP_025328756.1\|4369617_4370226_-\|thiol:disulfide-interchange-protein-DsbA/DsbL	gnl\|CDD\|239317	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.	1.65218e-56
NZ_CP006579.1\|WP_025328741.1\|4351814_4352030_-\|50S-ribosomal-protein-L31	gnl\|CDD\|376487	pfam01197, Ribosomal_L31, Ribosomal protein L31.	3.14825e-37
NZ_CP006579.1\|WP_025328745.1\|4357541_4359383_-\|dihydroxy-acid-dehydratase	gnl\|CDD\|237104	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional.	0
NZ_CP006579.1\|WP_025328742.1\|4352177_4354385_+\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NZ_CP006579.1\|WP_025328743.1\|4354543_4355671_-\|porin-OmpA	gnl\|CDD\|236764	PRK10808, PRK10808, outer membrane protein A; Reviewed.	4.94528e-162
NZ_CP006579.1\|WP_025328736.1\|4346377_4347085_+\|two-component-system-response-regulator-RstA	gnl\|CDD\|236738	PRK10701, PRK10701, DNA-binding transcriptional regulator RstA; Provisional.	1.17724e-154
NZ_CP006579.1\|WP_025328748.1\|4360843_4362490_-\|acetolactate-synthase-2-catalytic-subunit	gnl\|CDD\|181601	PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed.	0
NZ_CP006579.1\|WP_025328754.1\|4367649_4368285_+\|nicotinamidase	gnl\|CDD\|238493	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).	2.15757e-79
NZ_CP006579.1\|WP_025328750.1\|4364512_4365412_+\|acyltransferase	gnl\|CDD\|237584	PRK14014, PRK14014, putative acyltransferase; Provisional.	0
NZ_CP006579.1\|WP_025328751.1\|4365421_4366381_+\|acyltransferase	gnl\|CDD\|237584	PRK14014, PRK14014, putative acyltransferase; Provisional.	5.18968e-178
NZ_CP006579.1\|WP_025328744.1\|4355907_4357440_-\|threonine-ammonia-lyase,-biosynthetic	gnl\|CDD\|236417	PRK09224, PRK09224, threonine ammonia-lyase IlvA.	0
NZ_CP006579.1\|WP_025328739.1\|4348829_4350086_-\|malate-dehydrogenase	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
NZ_CP006579.1\|WP_025328752.1\|4366311_4366812_-\|DUF523-domain-containing-protein	gnl\|CDD\|377367	pfam04463, DUF523, Protein of unknown function (DUF523). Family of uncharacterized bacterial proteins.	5.6522e-63
NZ_CP006579.1\|WP_025328753.1\|4366924_4367575_-\|DNA-mismatch-repair-protein-MutT	gnl\|CDD\|226596	COG4111, COG4111, Uncharacterized conserved protein [General function prediction only].	1.31157e-11
NZ_CP006579.1\|WP_025328747.1\|4360568_4360847_-\|acetolactate-synthase-2-small-subunit	gnl\|CDD\|236862	PRK11152, ilvM, acetolactate synthase 2 small subunit.	7.57275e-26

>NZ_CP006579.1|WP_025328745.1|4357541_4359383_-|dihydroxy-acid-dehydratase
MPKLRSATTTHGRNMAGARALWRATGMTDQDFGKPIIAVVNSFTQFVPGHVHLKDLGQLVAREIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCISNCDKITPGMLMAALRINIPVIFVSGGPMEAGKTKLSDQIIKLDLVDAMIQGADPKVSDAQSDQIERSACPTCGSCSGMFTANSMNCLTEALGLSQPGNGSLLATHADREQLFKLAGQRIVALANRYYQQDDESALPRNIATKAAFENAMALDIAMGGSTNTVLHLLAAAQEAGVDFTMADIDRMSRKVPQLCKVAPSTQKYHMEDVHRAGGVVAILGQLEKAGLVHGDTRNVLGTSLHELLEQYDVSRCDDKAVHDFYRAGPAGIRTTKAFSQDCRWPELDLDRAEGCIRSLDNAYSLEGGLAVLSGNLALDGAIVKTAGVDDENLCFRGPARVFESQDTAVAGILDGTVKAGEVVVIRYEGPKGGPGMQEMLYPTTYLKSMGLGKACALITDGRFSGGTSGLSIGHVSPEAASGGTIGLVEDGDIININIPARSMVLEVADSVLAARRAAVEARGWKPLNRQRQVSYALRAYAMLATSADKGAVRDLSKLEE
>NZ_CP006579.1|WP_025328744.1|4355907_4357440_-|threonine-ammonia-lyase,-biosynthetic
MVSAADYLRKVLLSPVYEAARVTPLQSLKKLSERLGNQVSLKREDLQPVHSFKLRGAYHKIATLSAEQKANGVVAASAGNHAQGVALSAAKLGIKAIIVMPKTTPDIKIDAVRRLGGNVMLFGNSFDEAYGESRRLSETEGYTLIPPFDDVEVIAGQGTIGKELLEQDTHLTHVFVPVGGGGLAAGVAVYIKQLLPDVKVIGVEAEGSACLKAAMEAGEPVNLERVSLFADGVAVKRIGTETFRLCNQYLDEVVTVSNDQICAALKDIFDDCRAIAEPSGALSLAGLKAYSEREQVKGGRMAAILSGANVNFHSLRYVSERCEIGEKREGMLAVTIPERKGAFLDFCRQLGPRMVTEFNYRYADAAQASLFVSVRLSGGDEELGQIIDQLGGNGYPVVNMTESELAKNHVRYMIGGRPARPLGERLYSFKFPEQPGALMRFLETLGCRWNISLFHYRNHGADYGRVLCAFELPDEDVAAFHDYLHEIGYGWKEVSEDPAYRLFLASQGSQ
>NZ_CP006579.1|WP_025328743.1|4354543_4355671_-|porin-OmpA
MNRSTLAVLIGALMATGTVQAAAQDNTWYVGGKAGWSNFYGVDYDEQVKELFDAFDPGQDHSDLGLGLFAGYQVNRNVAVELGYDWLGKYQVDQRFSGNGVEAGLDGEAKAQMIQATMKIGFPATEALDIYGRLGGAYAWTDSSISAWANDGTSNLSASGGGKYHGAAFVGALGIEYAIDRDWAARLEYQYTTPLGKTSLDESGIELDNGLLSVGMLYRFGQVGDEPVAPTPAPVPEPAPAPVLVEKQFSLDSDVLFEFNKATLKPAASQALDNLFAQILAANPKDGVATVIGHTDRIGSDAYNQALSEQRARTVADYLIAKGLFADKVRAEGQGESSPVTGGSCPDGAKAQMIACLAPDRRVEVRLTGVSQVAE
>NZ_CP006579.1|WP_025328742.1|4352177_4354385_+|primosomal-protein-N'
MNSSQTLDLVRVAVPVPLRRHFDYLSPLPLPEPGCRVEIPFGPQTLVGLVVDHPTESQVPRNKLKPIKRVLDSAPVLGPDILALMAWSASYYQHPLGEVLPHALPVLVRKGEPAAYRELEFWFATEAGMALDLNEFKRAAKQQQALALLRKGPQTPSALKQEEIQSAALTALEKKGLLEKRSLEPSHDGDWATHFDAGEGLRLNGEQALAVAAVTSQSDKFGAFLLDGITGSGKTEVYLSILEPLLKAGKQALVMVPEIGLTPQTINRFRRRFKVPVVAMNSAMNDRERLDAWLACRDGGAAILIGTRSAVFTPFKNLGIIIIDEEHDGSFKQQDGFRYHARDLAVMRAHRAGIPILLGSATPSLETLHNARTGKYHHLSLTRRAGNAQTARQVILDIKSVRLQAGLSPQLEQLMGSHLAAGNQVMLFLNRRGYAPSLICHQCGWSAACERCDAWYTWHQAGRRLHCHHCDSVRPLPHHCPECGSNELIGSGVGTEQLEQLLTTVFPQYPVVRIDRDNTRRKGELETHLGDIKAGKYKILIGTQMLAKGHHFPDVTLVGLLDVDGALFSADFRAAEKLAQLYTQVAGRAGRASKPGLVVLQSHHPEHALLQDLTQNGYGHFADTALKERRLLGLPPFSYQGLFRAEANGRDEVQLFLSRLADTLRSARYPQVQVLGPISGFMERKAGKFRMQLLVQGPSRAPLAQLLDWAVKELDGWPETKKVRWSLDIDPTELN
>NZ_CP006579.1|WP_025328741.1|4351814_4352030_-|50S-ribosomal-protein-L31
MKAGIHPEYVAITCKCSCGNVINTFSTLGKDLNLDVCSACHPFYTGKQKEVSSGGRVDKFNKRFGGLTAKK
>NZ_CP006579.1|WP_025328740.1|4350264_4351698_-|DUF2867-domain-containing-protein
MRTCLVMGAAGYIGSYLVPHLQMLGYRVIAGARRPCRLPEGVEFRLADSLKPITLLPALAGVDTVFYLVHAMGAGAGFHRLEQQGVKNFAAAARAAGVRRIIYLGAIQPERCNSRHLNSRRHCGELFREAGVPTVELRAGIIIGPGSAAFEVMRDLVFNLPMMVTPKWVRSRTPPIALSNLLHYLGGLVEAPGVDGQIFNAAGPELLSYQQQLQRFAAHIGKRCPIIPIPFLSPRLSAWWLQFATSVPQPIAKALVGGLKHDIPADDGPLRALLPQHLLSFDEALTESLALEQKLGAEQQGEETPLGLRWRHPEYGFYDRTASGEAECLASPEVVWQVLQQLGGEQRYFYMNELWVVREWMDHLIGGPALTRGRTNPDRFVKGDMLDSWQILGVDEGRRLDLLFNMKAPGVGRLEFNIQPQESGLTRLRVTAHWHPQGAWGLAYWLAMLPFHLFIFQGMTEAIARQAEARAGIPVMD
>NZ_CP006579.1|WP_025328739.1|4348829_4350086_-|malate-dehydrogenase
MSDLRHDLRQQALDYHAQPIPGKIAIALTKPAETARDLALAYSPGVAEPVREIAANPADAYRYTGKGNLVAVISNGTAILGLGNLGPLASKPVMEGKALLFKRFAGIDAIDIEVKHETSQQFIDTVTAIADTFGGINLEDIKAPECFEIEQALIERCDIPVFHDDQHGTAIVTAAGLLNALEVQGKRIEQSRIVCMGAGAAATACMDLLIKCGAAPQNIFMLDRQGVIHSGRTDLNQYKQRFANDTPLRTLMDVIDGADVFVGVSGPDVLPAEAVALMAPNPVIFACSNPDPEIKPALAHSVRDDLIMGTGRSDYPNQINNVICFPFIFRGALDARASRINDAMKVAAVEAIRGLVKEPVPAEVLTAAGVSALTFGKEYVIPKPMDARLLPRVARAVALAAVASGVARIALPADYMQD
>NZ_CP006579.1|WP_025328738.1|4348584_4348764_+|hypothetical-protein
MKKLIPLSLAAVFALTSGFTMAATPTKAAAPQATQTKVVKKHHKATHAAPAVKVAPKTK
>NZ_CP006579.1|WP_025328737.1|4347204_4348530_+|two-component-system-sensor-histidine-kinase-RstB
MRRLFIQFYLLLIGCFGLAILLIGLVYQVSAERAGDRYLEHMMQGSLGLLTGELARLPPARWPARMGEQSQQLKLPLQLGALANQPLAKEDQAFLEAGNIVIVEEDDTFLQRIPDTDQVLIVGPVPYLSYLHELHWVDVGLLLLIGLSLGLPILLWLRPHWRGLQRLEQTARRVGDGDLSCRTGLPPGSSLGRVGRTFDQMAEQLQAMLASRKQLTDAIAHELRTPLVRLRYRLAMLAEPPTAEEQQGLERDLGALDALIEEMLTYARLDRPELPLQCSDLELGRWAGERLPDWQALRPDRRLALQLPAHPLPWRGDIRLLDRALENLIGNALRHATSRVSLTMSWQQDHYLLEVADDGPGIDPALAPQIFEPFVRLDQSRDRRTGGTGLGLAIVRSIARHHGGEVQLLPAETGARFCLRLPVHLDTNRHQPLTEPQARQP
>NZ_CP006579.1|WP_025328736.1|4346377_4347085_+|two-component-system-response-regulator-RstA
MPRVLFVEDDPEIGQLISSWLGRHDIEVLLETRGDRALARALAEQPDLVLLDIMLPGQDGLSLCRDLRPRFAGPIVMLTSLDSDMNQILSLELGANDYILKTTPPPVLLARLRVQFRQQGQAPQPAALSTPPQRLQFGRLLIDGPGRDVRLDGNSIPLSTADFDLLWELACHAGQILGREALFRSLRGRDYDGQDRSMDVAISRLRRKLGDDSTNPTRIKTVRQKGYLLVPQAWE
>NZ_CP006579.1|WP_025328747.1|4360568_4360847_-|acetolactate-synthase-2-small-subunit
MKQHSFHQPGCAQHTLHIHAQPRPEVMERVLRVVRHRGFALCALNMEQDCQQLRITVTVESEHPIQQLWSQLVKLVDVSRVDALEQQPRISA
>NZ_CP006579.1|WP_025328748.1|4360843_4362490_-|acetolactate-synthase-2-catalytic-subunit
MNGAQFLVQALKKQGVTQVFGYPGGAIMPVYDALYDGGLAHQLCRHEQGAALAAVGYARASGQVGVCIATSGPGATNLVTGLAEALLDSVPLVAISGQVACAAVGTDAFQEVDVLGMSLSCTKHSFMVTDAADLGRVLAEAFAIATEGRPGPVLIDFPKDVQLAAVPAQSPLFAVEEPEPLNPAELTLARTLLAAAERPVLYVGGGVGMANAEQQLRDFAAVTGMPAVTTLKGIGALDPDSPVYLGMLGMHGTKAANYAVQQCDLLVVVGARFDDRVTGKLEEFAPEARVIHLDVDAAEFGKRRAADVGITTDLKRVLPALAMALAIDPWREHCAAMAREYAFRYDHPGQPIYAPALLKQLSALLPETSVVACDVGQHQMWVAQHMRFTSPRNHLSSAGLGTMGFGLPAAIGAKMSRPDDEVVLVSGDGSFMMNVQELGTIRRAQLKVKMVLIDNQRLGMVRQWQELFFDGRYSETILSDNPDFIALAAAFGIPGETITCKEQIAGALDRLLASESAYLLHVAISEEENVWPLVPPGVANHKMMEQRP
>NZ_CP006579.1|WP_025328749.1|4362873_4364391_+|YifB-family-Mg-chelatase-like-AAA-ATPase
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGRFDLAIAIGILAASKQIPATYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQLLAVTAWLAGQYELPLPEPQTTDALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQEAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLETGHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERGESSRQIRDRVLAARERMQNRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRPAIEKEHLIEALGYRAMDRLLSRLRSGQ
>NZ_CP006579.1|WP_025328750.1|4364512_4365412_+|acyltransferase
MHNKLIERLRGCLSTLLYFLNTLFWFVPILLLGLIKLLLPLKGWRTLCNALLDGCASCWIGFNNLIQKTIIRTPFEVVGVDKGRRNEWYMVVANHQSWVDILVLQRIFNQKIPFLKFFLKKELIWVPFLGLAWWALDFPFMRRYSRSLLEKKPHLKGKDIETTRKACAKFRHIPVSVMNFVEGTRFTAHKHDKQGAPYRHLLHPRAGGIAFTLAAMGDQLHKLVDVTIAYPGGIPSYWDFMCGRVKEIKVRVRFLPIERNLVGDYFNDPEFQQEFQQWLNGIWREKDQTLGQLLADKTQ
>NZ_CP006579.1|WP_025328751.1|4365421_4366381_+|acyltransferase
MLTLLPGPLVLIISAGLTILFTALCASLILLVSLAKLLLPIPAFGRACSRLNNRFMGLWLACNALVIRLTTRIDWQLEDETQLRKDGWYLIISNHMSWTDIVVLGHLFRDRLPVPKFFMKHELIYIPLLGLACWGLDMPFMRRYSREFLLRNPHLRGKDIETTRNACEKFRHIPTTVINFVEGTRFTEEKREATRSRYRHLMPPKAAGLAFTLAAMGEQFDSLINVTIRYPDNSETPFKDFLMGRMKRIQVRIEELPVDEALVGDYFNDKQFKRGFQAWLNQRWQEKDAVLDGWQRDQEPLPVAAKEGSRESAAASSAN
>NZ_CP006579.1|WP_025328752.1|4366311_4366812_-|DUF523-domain-containing-protein
MNDASVHKVLVSACLLGQPVRYDGQSKGIVSDWLDALGAEGRALTFCPEVAGGLPTPRPPAERQGELVVTESGLDVTAEFDRGAELALGLCLAQGIRFALLKEGSPSCGSGRIYNGRFEGVSMAGEGKTTALLRRHGIAVFSEDQLAELAAALSLDPSLAATGSGS
>NZ_CP006579.1|WP_025328753.1|4366924_4367575_-|DNA-mismatch-repair-protein-MutT
MPRMSLDMVVLRLNEERLELLLETRDRPPFSHCWQLPALRIDETRDRDLDAARHRLLGEWGLGHCYSEQVCTLGNLERDPRGWSTTLVYLCLVEPEAEAVRGHWHPLSALPSLDLAFDHGQLVAMGLERLRIKSRYSTLPLQLLGAEFTLSEVQRAFEIVLQTPMNTAAFRKRIHRADILVDTGRKRTGKQRPAILYRLESPCCVMFDQVMHGAEA
>NZ_CP006579.1|WP_025328754.1|4367649_4368285_+|nicotinamidase
MGTIASLDIDAQKGFTPLCPNELPVAGGADIVAALNAQAALASLRIGSKDAHPANAAWVVTTPAAMLQPLDLPNADLTWPTHCVPGTPGFELLDGLPAPIDYDFFIWKGVEPDLHPYGACYHDLAEHRSTGLIEFLQARGVSTVLVGGLATDYCVKTSVLQLRRAGLRVIVHLDACRGIAPETVASARTQMIEAGAELAQTLVDVQRLLDA
>NZ_CP006579.1|WP_025328755.1|4368365_4369544_+|nicotinate-phosphoribosyltransferase
MPPILTSLLDTDAYKLHMQQAVFHRYPDAEVVAEFHSRNEEDLLPMMGEIEEQLRLAGSLRLTGSELDFLAERPFFTADYLDHLRRKPLDASLLKVFEQDGRINVRVEGPWQDVILWEIPVLAIISEMRNRFRYPQFGVSHALARLDQKIDKLERELSPEEMQDFNLIDFGTRRRFSHAVQDAVVGRLKERLPAFRGTSNYQLAQKYRLPAVGTQAHEWFQAHQQLGFPLEHSQRAALISWLDEFTNHLGIALTDCITMDAFLRDFDFELASRYQGLRHDSGDPVVWGEKAISHYQRLGIDPKDKTLVFSDGLNLDKAVELFRHFRGRINTSFGIGTKLTCDLPGVSPMNIVFKLMECNGGPVAKISDSPGKTLCRDADFIRNLKQAFHVGV
>NZ_CP006579.1|WP_025328756.1|4369617_4370226_-|thiol:disulfide-interchange-protein-DsbA/DsbL
MKKVLFFLAAMLMIPMVHAAPQFKEGVNYDVVTQTGSAQPEVLEFFSYFCPHCAKFEPIAEDLKKSLPEGVPMKKNPVAFLGREMGPEMQRAYAVANLLNVEGKLTPVIFDKIHTQRQVPQSRADVKQIFVDNGVPAEEFDGAVDSFAVSGMVSQFDRNTESYNIRGVPAFLVNGKYLVKIESITSQEQFNQLVKFLLAKKD

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP006579_10	10.1\|1170337\|31\|NZ_CP006579\|CRISPRCasFinder	1170337-1170367	31	MH576962	Streptomyces phage Satis, complete genome	74373-74403	4	0.871
NZ_CP006579_10	10.1\|1170337\|31\|NZ_CP006579\|CRISPRCasFinder	1170337-1170367	31	MK620894	Streptomyces phage Kradal, complete genome	74377-74407	4	0.871
NZ_CP006579_10	10.1\|1170337\|31\|NZ_CP006579\|CRISPRCasFinder	1170337-1170367	31	NC_024123	Pseudomonas phage KPP25 DNA, complete sequence	43912-43942	8	0.742

1. spacer 10.1|1170337|31|NZ_CP006579|CRISPRCasFinder matches to MH576962 (Streptomyces phage Satis, complete genome) position: , mismatch: 4, identity: 0.871

-cggtccgcgtcttcttctggtgcgggttgtg	CRISPR spacer
acggcccg-gtcttcttctcgcgcgggttgtg	Protospacer
 ***.*** ********** *.**********

2. spacer 10.1|1170337|31|NZ_CP006579|CRISPRCasFinder matches to MK620894 (Streptomyces phage Kradal, complete genome) position: , mismatch: 4, identity: 0.871

-cggtccgcgtcttcttctggtgcgggttgtg	CRISPR spacer
acggcccg-gtcttcttctcgcgcgggttgtg	Protospacer
 ***.*** ********** *.**********

3. spacer 10.1|1170337|31|NZ_CP006579|CRISPRCasFinder matches to NC_024123 (Pseudomonas phage KPP25 DNA, complete sequence) position: , mismatch: 8, identity: 0.742

cggtccgcgtcttcttctggtgcgggttgtg	CRISPR spacer
tcttcagcgtcttcttctggtgcggcatcag	Protospacer
.  ** *******************  *  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1024822 : 1034129

Staphylococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025326024.1\|1024822_1027654_+	TMAO reductase system sensor histidine kinase/response regulator TorS	A0A1V0SGX0	Hokovirus	1.4e-44	32.5
WP_025326025.1\|1027688_1027976_-	hypothetical protein	NA	NA	NA	NA
WP_025326026.1\|1028405_1029659_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	1.3e-100	53.4
WP_025326027.1\|1029811_1030261_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_025326028.1\|1030458_1031568_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	3.0e-48	34.9
WP_025326029.1\|1031622_1032276_+	riboflavin synthase	A0A1V0SE20	Indivirus	2.1e-20	37.5
WP_025326030.1\|1032418_1033528_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.1e-63	39.0
WP_025326031.1\|1033658_1034129_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	6.0e-30	48.7

DBSCAN-SWA_2

2255218 : 2266338

Hokovirus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025327033.1\|2255218_2259142_-	transporter substrate-binding domain-containing protein	A0A1V0SGX0	Hokovirus	1.2e-30	35.2
WP_005300715.1\|2259196_2259493_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	3.0e-11	35.6
WP_025327034.1\|2259496_2261884_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	1.4e-05	23.6
WP_025327035.1\|2261896_2262880_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	5.3e-36	38.2
WP_010674800.1\|2263203_2263560_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_005315535.1\|2263574_2263772_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_041204270.1\|2263857_2264406_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.8e-14	37.2
WP_025327036.1\|2264409_2266338_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	4.8e-126	37.9

DBSCAN-SWA_3

2754990 : 2803269

Salmonella_phage(23.81%)

portal,tail,lysis,integrase,tRNA,terminase,head,plate,capsid,holin

attL 2762421:2762439|attR 2804696:2804714

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025327419.1\|2754990_2756367_-\|tRNA	cysteine--tRNA ligase	H2EDD6	Moumouvirus	7.9e-46	30.2
WP_025327420.1\|2756570_2757068_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_025327421.1\|2757057_2757771_+	DUF4269 domain-containing protein	NA	NA	NA	NA
WP_025327422.1\|2757767_2758496_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_025327423.1\|2758619_2758868_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_025327424.1\|2759081_2759705_-	glutathione S-transferase	NA	NA	NA	NA
WP_158318658.1\|2759944_2760094_+	hypothetical protein	NA	NA	NA	NA
WP_025327425.1\|2760315_2761089_-	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	2.7e-19	31.7
WP_041204296.1\|2761196_2762105_+	LysR family transcriptional regulator	NA	NA	NA	NA
2762421:2762439	attL	NA	NA	NA	NA
WP_041204492.1\|2762448_2762805_-	hypothetical protein	NA	NA	NA	NA
WP_025327427.1\|2762832_2763888_-\|integrase	site-specific integrase	A5X9F3	Aeromonas_virus	4.8e-112	58.7
WP_148297626.1\|2764026_2765010_-	hypothetical protein	NA	NA	NA	NA
WP_025327428.1\|2765100_2765460_-	hypothetical protein	NA	NA	NA	NA
WP_025327429.1\|2765774_2766425_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	1.1e-45	45.1
WP_025327430.1\|2766544_2766733_+	helix-turn-helix domain-containing protein	F8TUK2	EBPR_podovirus	2.0e-05	45.5
WP_025327431.1\|2766758_2767028_+	hypothetical protein	Q1I116	Pasteurella_virus	4.8e-08	44.1
WP_025327432.1\|2767020_2767527_+	phage regulatory CII family protein	A5X9F7	Aeromonas_virus	3.2e-45	54.9
WP_025327433.1\|2767535_2767760_+	ogr/Delta-like zinc finger family protein	E5E3T8	Burkholderia_phage	3.9e-11	50.0
WP_025327434.1\|2767756_2767978_+	hypothetical protein	NA	NA	NA	NA
WP_025327435.1\|2767993_2768437_+	hypothetical protein	NA	NA	NA	NA
WP_025327436.1\|2768680_2768998_+	hypothetical protein	A5X9G2	Aeromonas_virus	2.4e-43	83.3
WP_025327437.1\|2768994_2769201_+	hypothetical protein	NA	NA	NA	NA
WP_049828120.1\|2769302_2769641_+	hypothetical protein	NA	NA	NA	NA
WP_025327439.1\|2769637_2772022_+	replication endonuclease	A5X9G4	Aeromonas_virus	8.4e-104	35.8
WP_025327440.1\|2772036_2772249_+	hypothetical protein	NA	NA	NA	NA
WP_025327441.1\|2772250_2772592_+	hypothetical protein	NA	NA	NA	NA
WP_025327442.1\|2772597_2773875_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	1.6e-130	56.6
WP_025327443.1\|2773871_2774294_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	7.5e-32	51.2
WP_080675161.1\|2774427_2774802_+	hypothetical protein	NA	NA	NA	NA
WP_025327445.1\|2774977_2776567_+	SEL1-like repeat protein	NA	NA	NA	NA
WP_041204297.1\|2776985_2777993_-\|portal	phage portal protein	A0A077K9Q8	Ralstonia_phage	4.5e-115	60.1
WP_025327447.1\|2778025_2779792_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	3.9e-231	66.2
WP_025327448.1\|2779941_2780766_+\|capsid	GPO family capsid scaffolding protein	F1BUR1	Erwinia_phage	3.8e-56	47.7
WP_025327449.1\|2780778_2781810_+\|capsid	phage major capsid protein, P2 family	E5E3W8	Burkholderia_phage	1.5e-105	55.6
WP_025327450.1\|2781819_2782500_+\|terminase	terminase	A4PE31	Ralstonia_virus	4.0e-43	45.7
WP_025327451.1\|2782597_2783068_+\|head	head completion/stabilization protein	A0A1S5NNA6	Burkholderia_phage	2.3e-29	48.3
WP_025327452.1\|2783067_2783271_+\|tail	tail protein X	A0A2H4J946	uncultured_Caudovirales_phage	4.0e-15	59.1
WP_025327453.1\|2783273_2783504_+	TraR/DksA C4-type zinc finger protein	A0A1S6L007	Salmonella_phage	3.2e-05	38.0
WP_017411174.1\|2783513_2783876_+	membrane protein	E5E3R9	Burkholderia_phage	2.3e-13	38.8
WP_148297627.1\|2783949_2784153_-	hypothetical protein	NA	NA	NA	NA
WP_025327454.1\|2784151_2784460_+\|holin	phage holin family protein	T1SA10	Salmonella_phage	8.8e-06	37.6
WP_025327455.1\|2784456_2785278_+	DUF3380 domain-containing protein	Q9ZXL6	Pseudomonas_virus	6.3e-67	53.8
WP_025327456.1\|2785267_2785741_+\|lysis	phage lysis regulatory protein LysB	E5G6N2	Salmonella_phage	8.5e-08	36.1
WP_025327457.1\|2785851_2786322_+\|tail	phage tail protein	A0A077K8R3	Ralstonia_phage	3.7e-32	50.4
WP_025327458.1\|2786303_2786756_+	phage virion morphogenesis protein	A0A0M3UL83	Salmonella_phage	1.6e-27	47.3
WP_025327459.1\|2786830_2787613_+	hypothetical protein	NA	NA	NA	NA
WP_158318666.1\|2788254_2788671_+	Rha family transcriptional regulator	Q8H9L9	Vibrio_phage	3.3e-08	71.4
WP_049828153.1\|2788755_2789778_-	P63C domain-containing protein	A0A0M4S6X1	Salmonella_phage	1.3e-141	75.1
WP_025327462.1\|2790011_2790584_+\|plate	phage baseplate assembly protein V	F1BUP5	Erwinia_phage	2.2e-26	40.3
WP_025327463.1\|2790580_2790940_+	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	1.2e-22	51.3
WP_041204303.1\|2790936_2791818_+\|plate	baseplate J/gp47 family protein	A0A218M4K5	Erwinia_phage	1.7e-65	51.2
WP_025327464.1\|2791828_2792230_+	hypothetical protein	A0A0U1UNR7	Pseudomonas_phage	5.1e-30	51.9
WP_049828122.1\|2792229_2793645_+\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	6.0e-33	51.0
WP_158318659.1\|2793646_2794903_+\|tail	tail fiber protein	A0A1B0XUH9	Freshwater_phage	1.4e-25	67.7
WP_049828123.1\|2794899_2795535_+\|tail	tail assembly chaperone	H9C0Y3	Aeromonas_phage	4.9e-51	51.7
WP_025327467.1\|2795741_2796920_+\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	1.8e-136	62.5
WP_025327468.1\|2796929_2797448_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.8e-51	59.3
WP_025327469.1\|2797528_2797813_+\|tail	phage tail assembly protein	E5FFG6	Burkholderia_phage	1.4e-10	45.3
WP_025327470.1\|2797821_2797953_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_025327471.1\|2797949_2800385_+\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	9.7e-140	37.4
WP_025327472.1\|2800397_2800889_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	3.2e-34	49.7
WP_025327473.1\|2800888_2802049_+	phage late control D family protein	A0A0M5M5V5	Salmonella_phage	2.4e-96	48.6
WP_158318660.1\|2802351_2802612_+	ash family protein	NA	NA	NA	NA
WP_025327474.1\|2802645_2803269_+	Rha family transcriptional regulator	Q8H9L9	Vibrio_phage	2.3e-29	61.1
2804696:2804714	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3750984 : 3760960

uncultured_Mediterranean_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080675227.1\|3750984_3752850_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-34	32.6
WP_025328237.1\|3753063_3754851_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.5e-73	41.1
WP_005331908.1\|3754939_3755383_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	2.0e-27	48.6
WP_005309452.1\|3755398_3755614_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_025328238.1\|3755793_3756807_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.1e-108	58.6
WP_025328239.1\|3756894_3757878_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	4.9e-34	33.7
WP_025328240.1\|3757924_3758989_-	LysM peptidoglycan-binding domain-containing protein	A0A0A7NU10	Lactobacillus_phage	4.9e-11	36.2
WP_025328241.1\|3758998_3759580_-	DedA family protein	NA	NA	NA	NA
WP_005332743.1\|3759576_3760194_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.4e-34	46.4
WP_025328242.1\|3760198_3760960_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.3e-70	53.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP006579

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection