CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP003328	Pasteurella multocida subsp. multocida str. HB03 chromosome, complete genome	3 crisprs	cas3,cas8f,cas5f,cas7f,cas6f,cas1,cas3-cas2,DEDDh,DinG,csa3	2	18	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP003328_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003328_1

288203-288950

TypeI-F

Consensus_repeat	Method
GTTCACCATCGTGTAGATGGCTTAGAAA	PILER-CR
GTTCACCATCGTGTAGATGGCTTAGAAA	CRISPRCasFinder
GTTCACCATCGTGTAGATGGCTTAGAAA	CRT

12 spacers

cas6f,cas7f,cas5f,cas8f,cas1,cas3-cas2

The CRISPR arrays of NZ_CP003328_1

>merge|NZ_CP003328|1|288203-288950|PILER-CR,CRISPRCasFinder,CRT
GTTCACCATCGTGTAGATGGCTTAGAAAATTAGCTGAAGACCGATTTATTAGAAATACAGGTTCACCATCGTGTAGATGGCTTAGAAAGAAACACTAGAAGATTTAACGGTCATTGAAAAGTTCACCATCGTGTAGATGGCTTAGAAAATTCGATTTCCAGTGCCGAAAATCCATGCCCTGTTCACCATCGTGTAGATGGCTTAGAAAATAATGACGTGTTCAACTAACGGCTGACAATCGTTCACCATCGTGTAGATGGCTTAGAAACACAACATGTGCTGAAAGTGCGTGAGATTTGAGTTCACCATCGTGTAGATGGCTTAGAAATACCCGATGTTAGAGGCAATCAAAGTGGAGCTGTTCACCATCGTGTAGATGGCTTAGAAAAAAGTCTCATTTAACACCGCGCGACGCTGGAAGTTCACCATCGTGTAGATGGCTTAGAAAAAGCCCACCTTGCGCTTGAACAGATGAATTAAGTTCACCATCGTGTAGATGGCTTAGAAATTTAAGCTACGTTTATCCGCAAGATTCACTACGTTCACCATCGTGTAGATGGCTTAGAAAGTTGGTGCGAATTTCACATCTAAGCTTGAAATGTTCACCATTGTGTAGATGGCTTAGAAAGTTGGTGCGAATTTCACATCTAAGCTTGAAATGTTCACCATCGTGTAGATGGCTTAGAAAAGTTAAAGCTAAGAAACTAACGGATATTGCGAGTTCACCATCGTGTAGATGGCTTAAAAA

>NZ_CP003328|1|1|288203-288770|PILER-CR
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTAGCTGAAGACCGATTTATTAGAAATACAG
GTTCACCATCGTGTAGATGGCTTAGAAA	GAAACACTAGAAGATTTAACGGTCATTGAAAA
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGATTTCCAGTGCCGAAAATCCATGCCCT
GTTCACCATCGTGTAGATGGCTTAGAAA	ATAATGACGTGTTCAACTAACGGCTGACAATC
GTTCACCATCGTGTAGATGGCTTAGAAA	CACAACATGTGCTGAAAGTGCGTGAGATTTGA
GTTCACCATCGTGTAGATGGCTTAGAAA	TACCCGATGTTAGAGGCAATCAAAGTGGAGCT
GTTCACCATCGTGTAGATGGCTTAGAAA	AAAGTCTCATTTAACACCGCGCGACGCTGGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	AAGCCCACCTTGCGCTTGAACAGATGAATTAA
GTTCACCATCGTGTAGATGGCTTAGAAA	TTTAAGCTACGTTTATCCGCAAGATTCACTAC
GTTCACCATCGTGTAGATGGCTTAGAAA

>NZ_CP003328|1|1|288203-288950|CRISPRCasFinder
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTAGCTGAAGACCGATTTATTAGAAATACAG
GTTCACCATCGTGTAGATGGCTTAGAAA	GAAACACTAGAAGATTTAACGGTCATTGAAAA
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGATTTCCAGTGCCGAAAATCCATGCCCT
GTTCACCATCGTGTAGATGGCTTAGAAA	ATAATGACGTGTTCAACTAACGGCTGACAATC
GTTCACCATCGTGTAGATGGCTTAGAAA	CACAACATGTGCTGAAAGTGCGTGAGATTTGA
GTTCACCATCGTGTAGATGGCTTAGAAA	TACCCGATGTTAGAGGCAATCAAAGTGGAGCT
GTTCACCATCGTGTAGATGGCTTAGAAA	AAAGTCTCATTTAACACCGCGCGACGCTGGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	AAGCCCACCTTGCGCTTGAACAGATGAATTAA
GTTCACCATCGTGTAGATGGCTTAGAAA	TTTAAGCTACGTTTATCCGCAAGATTCACTAC
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATTGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	AGTTAAAGCTAAGAAACTAACGGATATTGCGA
GTTCACCATCGTGTAGATGGCTTAAAAA

>NZ_CP003328|1|1|288203-288950|CRT
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTAGCTGAAGACCGATTTATTAGAAATACAG
GTTCACCATCGTGTAGATGGCTTAGAAA	GAAACACTAGAAGATTTAACGGTCATTGAAAA
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGATTTCCAGTGCCGAAAATCCATGCCCT
GTTCACCATCGTGTAGATGGCTTAGAAA	ATAATGACGTGTTCAACTAACGGCTGACAATC
GTTCACCATCGTGTAGATGGCTTAGAAA	CACAACATGTGCTGAAAGTGCGTGAGATTTGA
GTTCACCATCGTGTAGATGGCTTAGAAA	TACCCGATGTTAGAGGCAATCAAAGTGGAGCT
GTTCACCATCGTGTAGATGGCTTAGAAA	AAAGTCTCATTTAACACCGCGCGACGCTGGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	AAGCCCACCTTGCGCTTGAACAGATGAATTAA
GTTCACCATCGTGTAGATGGCTTAGAAA	TTTAAGCTACGTTTATCCGCAAGATTCACTAC
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATTGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	AGTTAAAGCTAAGAAACTAACGGATATTGCGA
GTTCACCATCGTGTAGATGGCTTAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003328.1\|WP_005721328.1\|298433_299648_+\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
NZ_CP003328.1\|WP_005753659.1\|289119_290100_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|187849
NZ_CP003328.1\|WP_025248431.1\|274817_277721_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273808
NZ_CP003328.1\|WP_005721326.1\|297921_298386_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	unknown	unknown	gnl\|CDD\|273927
NZ_CP003328.1\|WP_025248432.1\|287501_288062_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|274202
NZ_CP003328.1\|WP_005721379.1\|300335_300659_+\|iron-sulfur-cluster-assembly-protein-IscA	unknown	unknown	gnl\|CDD\|213674
NZ_CP003328.1\|WP_014325843.1\|281771_283931_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	unknown	unknown	gnl\|CDD\|236981
NZ_CP003328.1\|WP_016504384.1\|285505_286489_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|274204
NZ_CP003328.1\|WP_014325842.1\|279589_281638_+\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234655
NZ_CP003328.1\|WP_005725867.1\|295455_296046_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003328.1\|WP_005753664.1\|293458_295315_+\|response-regulator	unknown	unknown	gnl\|CDD\|236842
NZ_CP003328.1\|WP_025248430.1\|274260_274776_+\|heme-utilization-protein-HutZ	unknown	unknown	gnl\|CDD\|200361
NZ_CP003328.1\|WP_014325841.1\|278295_279408_-\|iron-sulfur-cluster-carrier-protein-ApbC	unknown	unknown	gnl\|CDD\|183270
NZ_CP003328.1\|WP_014325849.1\|296109_296913_-\|inositol-1-monophosphatase	unknown	unknown	gnl\|CDD\|236753
NZ_CP003328.1\|WP_014325850.1\|297126_297843_+\|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	unknown	unknown	gnl\|CDD\|223639
NZ_CP003328.1\|WP_005721273.1\|277887_278157_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP003328.1\|WP_014325846.1\|286491_287499_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP003328.1\|WP_005721377.1\|299879_300266_+\|Fe-S-cluster-assembly-scaffold-IscU	unknown	unknown	gnl\|CDD\|183087
NZ_CP003328.1\|WP_014325848.1\|290080_293401_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|187804
NZ_CP003328.1\|WP_016504385.1\|284161_285496_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|274203

Protein	Function_ID	Function_description	E-value
NZ_CP003328.1\|WP_005721328.1\|298433_299648_+\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
NZ_CP003328.1\|WP_005753659.1\|289119_290100_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187849	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	0
NZ_CP003328.1\|WP_025248431.1\|274817_277721_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	1.64668e-109
NZ_CP003328.1\|WP_005721326.1\|297921_298386_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	gnl\|CDD\|273927	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Regulatory functions, DNA interactions].	5.78928e-83
NZ_CP003328.1\|WP_025248432.1\|287501_288062_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|274202	TIGR02563, conserved_hypothetical_protein, CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	3.11594e-89
NZ_CP003328.1\|WP_005721379.1\|300335_300659_+\|iron-sulfur-cluster-assembly-protein-IscA	gnl\|CDD\|213674	TIGR02011, Protein_yfhF., iron-sulfur cluster assembly protein IscA. This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	6.36459e-65
NZ_CP003328.1\|WP_014325843.1\|281771_283931_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	gnl\|CDD\|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	0
NZ_CP003328.1\|WP_016504384.1\|285505_286489_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|274204	TIGR02565, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	5.3086e-151
NZ_CP003328.1\|WP_014325842.1\|279589_281638_+\|methionine--tRNA-ligase	gnl\|CDD\|234655	PRK00133, metG, methionyl-tRNA synthetase; Reviewed.	0
NZ_CP003328.1\|WP_005753664.1\|293458_295315_+\|response-regulator	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	0
NZ_CP003328.1\|WP_025248430.1\|274260_274776_+\|heme-utilization-protein-HutZ	gnl\|CDD\|200361	TIGR04110, hypothetical_protein_VSWAT3_12502, heme utilization protein HutZ. Members of this family are heme utilization proteins, typically designated HutZ. They are members of the PPOX family (pfam01243) and, except for the lack of an N-terminal extension, are closely related to one form of heme oxidase (1.14.99.3), HugZ (TIGR04109). Members typically are found in a three-gene operon with radical SAM enzyme HutW and a protein of unknown function, HutX.	1.59144e-95
NZ_CP003328.1\|WP_014325841.1\|278295_279408_-\|iron-sulfur-cluster-carrier-protein-ApbC	gnl\|CDD\|183270	PRK11670, PRK11670, iron-sulfur cluster carrier protein ApbC.	0
NZ_CP003328.1\|WP_014325849.1\|296109_296913_-\|inositol-1-monophosphatase	gnl\|CDD\|236753	PRK10757, PRK10757, inositol-1-monophosphatase.	9.50997e-153
NZ_CP003328.1\|WP_014325850.1\|297126_297843_+\|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	gnl\|CDD\|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	3.89077e-117
NZ_CP003328.1\|WP_005721273.1\|277887_278157_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	3.85836e-50
NZ_CP003328.1\|WP_014325846.1\|286491_287499_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP003328.1\|WP_005721377.1\|299879_300266_+\|Fe-S-cluster-assembly-scaffold-IscU	gnl\|CDD\|183087	PRK11325, PRK11325, scaffold protein; Provisional.	1.51567e-94
NZ_CP003328.1\|WP_014325848.1\|290080_293401_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NZ_CP003328.1\|WP_016504385.1\|284161_285496_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|274203	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	5.29485e-151

>NZ_CP003328.1|WP_025248432.1|287501_288062_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MTTHYIELKAIPQMDMLQSEVIGHCMQILHQFLPHFEGRVGVAFPAYGLGRTLGGIVRLFANQEDCNQLHQQLLRSGLSDYALISEVSKTPLSTECRSYSRVHRKGQSAIRRTEKRLKSQGRWDESIRADMQQRQQNVAFFPHYHLKSASTGQRFILAVKENRMPQSCVGVFNAYGLSNSATVPHF
>NZ_CP003328.1|WP_014325846.1|286491_287499_+|type-I-F-CRISPR-associated-protein-Csy3
MSKLSTPSVLAFERNLDISDAIFAQKDSKNDKDAPVPLRIREKSVRGTISNRLKNTITNDPAKLDAETEKANLQRVDVATLDDDKDTLVATFSVKVLPFTGRPNVCNDQDYQHQVMTTVAQYLSEQGMDELAKRYATNIANARWLWRNRMGAEKIKIEVTCGENTLHFDDAKQFSLNHFDHQDDKIHQIAKEIKQGLLGEKFVILYVTAYANMGYGQEVYPSQELVLDNSTNNRKSKILYEINQKAGMHSQKVGNAIRTIDTWYAEEVAFPIAAEPYGAVTTLGTAFRQPKTKKNDFYTLFDNWLLKGEVPPVEQQHYVMSVLIRGGVFGASGKE
>NZ_CP003328.1|WP_016504384.1|285505_286489_+|type-I-F-CRISPR-associated-protein-Csy2
MFQTDFYILFDHIKVQSANAISGPLSYGFPALTGLTGAMHALNRKLTHHPVQFGGVMVACHDYELQTYQNSAFSDRTFKQTRNPIKRNGETASIIEEGKIHLDLSLVVEVHVQDDRVFEALTDKTSQASQDFLQTCKNLLWQQRIAGGSVLEIGNVQLFNLEEDQDIPLALMPAFVLMDAKQELTNITEELKTGLRIGQLDEEGNVQKSCLPSCPDATALDALLEMATVHHIPEHANATASAWQTYSVKKGRGWLVPLPVGYQAISPLFAPGQLQHCRTQQYPSQYVETLYSLGKWVFPLSLPENLSQCFWRYTALQNNLYLISQGE
>NZ_CP003328.1|WP_016504385.1|284161_285496_+|type-I-F-CRISPR-associated-protein-Csy1
MSHTFRKRIDLFLQEQNLKKSESDRKKLAKATDPTEIEQLTQLIQEFDQKYQFDTWIANAANVMAKQLKFGTHIAKGIHPDTKGDNVNFQPSDSLPPEYVGSQSVSHLVLDANGNAAALPLASFFNFIVDEEKQVKLRDLLLADDPRLAGCFSDDLALSDVYKKQFQQALTGDLTQPETHERNKQVFWANGENPIEDDDYTCLIPLYPSSLTHAFYQKVNNNRYSEQNKQARENRQKKTVEQTHYLSINQLATVVLGGSKPQNISQLMSAQGGRNYLLPSLPPIIPSSRYFRLSPLQTTIFNDRLAYACRYGLRQLFEVVEARKNVYQVRDSRIDALNNILRTFLFHANLLQKQPAGWSKDSQLEMCEKYWLDPKRVHLPDEEAFRAEYEKGEWVAEVERRFALWLNKRLQKRFPHIAKDFDDVEYHEWRRNIRRTLRYRLRHP
>NZ_CP003328.1|WP_014325843.1|281771_283931_+|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL
MKQLFATTARGFEELLKVELTDLGAMDCQITQGGVHFHADEETQYRVLLWTRLASRILLPIVTCKVYSDLDLYSAVVGQNWLDYFDEKAHFMVDFNGTNREIRHTQFGAMRVKDGIVDYFERVGKPRPNVDKSQPDIRIHAYLNREELVISLDLSGDALHMRGYREDTGKAPLRETLAAAIVLRSGWQLGTPLVDPMCGSGTLLIEAAQMQANIAPQLHRLHWGFDFWKGHNQQAWDKVKGEAIELAEQTFNQNQKANFYGCDLDHRVLQKAKRNAQNAGVAHLIQWRQGDVAALKNPFVEAKGTVICNPPYGERLGTTPALIALYSVFGQRLKQQFADWNVSIFSGEPALLDCLRLRSHRQFKAKNGPLDCVQKNYHISARATASDENTQNLPEIDRTLSATQVAVDFANRLQKNSKKIEKWARQQGINAYRLYDADLPEYNLAVDRYDDHIVVQEYAAPKNIDENKARQRLLDAVTATLQVTGVETNKLILKVRQKQKGTNQYEKLANKGDYFYVNEYGAKLWVNLTDYLDTGLFLDHRLTRKMLGKMAKGKDVLNLFAYTGSATVHMALGGAKSTTTVDMSNTYLNWAEQNLLLNDLEGKQHKLIQADCLQWLARCDRQFDLIFVDPPTFSNSKRMEDSWDVQRDHIKLMTQLKRILRPNGTIVFSNNKRGFKMDVEGLETLGLSAVDITAKTLPLDFERNKQIHNCWVVRLKADL
>NZ_CP003328.1|WP_014325842.1|279589_281638_+|methionine--tRNA-ligase
MANSARDILVTCALPYANGAIHLGHLLEHIQADIWVRFQRMRGHKVHFICADDAHGTPIMLNADKLGITPEALIARSKADHVADFEGFNISYDNYHSTHSPENEALTAEMYKKLRANGFIKSRTISQLFDPEKGMFLPDRFVKGTCPKCKAEDQYGDNCEVCSSTYSPTELINPRSVVSGATPVLKESEHFFFDLPAFEGMLKAWIKSGSLQPEIANKMQEWFESGLQQWDISRDAPYFGFKIPDTEDKYFYVWLDAPIGYMASFKNLCDKTGLNFDDFWKKDSSAELYHFIGKDIVYFHSLFWPAMLDGCDLRKPTNVFAHGYVTVNGVKMSKSRGTFIQASTYLRHLAPEYLRYYYAAKLNNRIEDLDLNLEDFVQRLNADVVNKFVNLASRSAGFITKRFDGKLSAEIAEPELLAEFVEKAAQIATYYEEREFGKVVREVMQLADKANKYIDDKAPWVMAKEEGREAELQAVCSMALQLFRVLAIYLKPVIPQIIARAEAFLQDELTWESLNRPLLNHAILPFKALAQRLDLKQIEAIVNETKEQFVAQQALEQKNSAKAEPASQVEPIAETISIEDFAKLDLRVAKVMKCEAVPESNKLLRFELDLGDHTRQVFSGIKEAYNNPAELEGRFVVVIANLAPRKMRFGVSEGMILSAGTGGDDLFLLNADQGVKPGMQVK
>NZ_CP003328.1|WP_014325841.1|278295_279408_-|iron-sulfur-cluster-carrier-protein-ApbC
MGILFSDSLTDSQKQAIQNTFQQFQHPSLQKDLVSLNAIKKIEKGGETLRIEISMPFAWNTAFEQLKSALSTELLTLAECKDIKWQLNYQIATLKRANSHPAVKGVKNIIAVTSGKGGVGKSTISVNLALALQRQGARVGILDADIYGPSIPHMLGVADQRPTSPDNQHITPIQAHHIFANSIGFLMEPDNATIWRGPMASSALSQLLQETLWPDLDYLVIDMPPGTGDIQLTLSQQIPVTGAVVVTTPQDIALLDAIKGVAMFERVSVPVLGIIENMSMHICSNCGHQETIFGTGGAERIAQKYNVKVLGQQALHIRLREDLDKGIPTVVAAPESDIAQSFMQLAEKVATELYWQGSVIPSEIMFKEVK
>NZ_CP003328.1|WP_005721273.1|277887_278157_+|30S-ribosomal-protein-S15
MSLSTEKKAAIVAEFGRDAKDTGSSEVQIALLTAQINHLQSHFATHKKDHHGRRGLLRMVSRRRKLLDYLKRTNLELYTSTIARLGLRR
>NZ_CP003328.1|WP_025248431.1|274817_277721_+|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MRTTTIKFSAITLALLSYCGTILADSHQEATELDTITVSSQQDEMNIKEKKIGETVKTASQLKRQQVQDSRDLVRYETGVTVVEAGRFGSSGYAIRGVDENRVAITVDGLHQAETLSSQGFKELFEGYGNFNNTRNSVEIETLKVAKIAKGADSVKVGSGSLGGAVLFETKDARDFLTEKDWHIGYKAGYSTADNQGLNAVTLAGRYQMFDALIMHSKRHGHELENYDYKNGRDIQGKEREKADPYTITKESTLVKFSFSPTENHRFTVASDTYLQHSRGHDLSYNLVATTHIQLDEKESRHANDLTKRKNVSFTYENYTVTPFWDTLKLSYSQQRITTRARTEDYCDGNELCDSYKNPLGLQFKDGQILDPAGNKIKLQGSGLSTQIVDENGKPFPTTTGTNNAAFSNNLRLRPTGFWLDCSVFDCNKPFTVYNISNGTYQAREVLLSEEITVDGKLYKTAKEEGGLPNYLILPNSKGYLPYDYKERDLNTNTKQINLDLTKTFLTFNIENNLSYGGVYSRIEKEMINKAGYEGRNPTWWADRILGQSSYCGYNALKCPKHEPLTSFLIPVEATTQSLYFANILKVHNMISIDLGYRYDHIKYNPEYTPGVTPKIPDDMVKGLFIPMPKEPQLKDFYYNYAKFGEAYKKWKEYLPKNAEENIAYIAQDKTFKKHSYSLGATFDPLNFLRVQVKYSKGFRAPTSDELYFTFKHPDFTILPNPVLKPEEAKNQEIALTVHDNWGFVSTSVFQTKYRHFIDLAYLGSRNLSNSVGGQAQARDFQVYQNVNVDNAKVKGLEINARLNLGYFWHVLDGFNTSYKFTYQRGRLDGDRPMNAIQPKASVFGLGYDHKENKFGADLYITRVSEKKAKDTYNMFYKEQGYKDSAVRWRSDDYTLVDAVGYIKPIKNLTLQFGVYNLTDRKYLTWESARSIKPFGTSNLINQKTGAGINRFYSPGRNFKLSAEITF
>NZ_CP003328.1|WP_025248430.1|274260_274776_+|heme-utilization-protein-HutZ
MTTNRQEVLQNRLGPEIQELKAQCKTVMLATVGEDGNPNVSYAPFAINNGEYQVFISTIARHARNLQEVPKVSLMLIEDESQSRQIFARRRLSFDAVARVVERESEECHSGVEALKARHGALMDELSRMKDFHLFSFKPSQGLFVKGFGQAFQVSNDDLVSFVHLVEGHQE
>NZ_CP003328.1|WP_005753659.1|289119_290100_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MRKTPYIPSSDLKTIMHSKRANIYYLEHCRVLLNGGRVEYVTDEGRESLYWNIPIANTSCLLLGSGTSITQAAMRELSKAGVMVGFCSGGGTPLFNGTEAEIGCEFFSPQSEYRPVMYLQQWCKFWFDDEKRLAVAKALQQQRLALLEPIWSKLEWVYSCEKLTALVTQYQHEFAQAAHSQALLAAEGRLTTKLYALANQATMNEPDFKRSERGKSIDLVNQFLDHGNYLAYGLGATACWVLGLPHGLAVLHGKTRRGGLVFDAADIIKDSMILPQAFISAQNGDSEKEFRQACIQNLLRFGALDIIIERLQQLALQGASDEYFAG
>NZ_CP003328.1|WP_014325848.1|290080_293401_+|type-I-F-CRISPR-associated-helicase-Cas3
MNILLVSQCQKNALTETRRILDQFAERCGDRVWQTAITQAGLETLYKMLRQTARKNTAVACYWTHRKNSAELLWIVGDRRQFNDQGRVPTNRTQRNILRAEEEIAWQDAYSLQILTALSALLHDVGKSSVGFQTKLDKTKNAPRVADSYRHEWISVRLFEAMIEGCQTDQAWLERLANWQVFEETNPTWFSKIIQDRPNENHFSDFAYLPPLARRVIWLITSHHRLPFTHDISRSQDCIKNLRKYAKLTFESLFKAYKPAVGWVSNGAEHPTPQAFWQFQRVATQSQAWQKHMARWAKKALNHPALFSVSENADPFLLLLARLCLMTGDHYYSAQDQNEKLGELNFPLLANTYRENHQPKQRLDEHLIGVCQTAVRFARLLPKFPRELPRIKQHKPFVQLAKDRFAWQNKAVNVARLLQKTSESQGFFGVNMASTGCGKTLANAKMMYALNDSKQGARFTIALGLRVLTLQTGSALKKRLHLSDQDLAVLVGGSAVKKLYALQQEKQNQLAQQGSESAEDWLEDMQVEGATYIESAVENEAVLSFLSKDDKTKKLLYAPIVSCTLDHLISASESVRGGHHIVPILRLLTSDLILDEPDDFAQEDLPALSRLVYLAGLFGSRVLLSSATLTPDFITGLFKAYQAGRKIYNQQKGIVAALPICCAWVDEFQQVQANCGQDEQFIQQHDEFVRKRAENLAKSPVRRQAEILSLPSLKPREGEDLHYGLLADTLLQKAMALHDLHGQTDPHSQKKVSVGLIRFSNIEPMIPLAKALFALQASEKFADYQVHLCCYHSRQLLLLRSYLEEKLDKILDRHTPEQLFQHEEIALPMSQYKAKNHLFIVLGSPVTEVGRDHDYDWAIVDPSSMRSIIQLAGRVWRHRAEKVAEQPNIALLPINWRGLKVRYQQKDVIYHRPGFESHQHKLATHKLDQLISQRDLAHIQATPRIVKPEVLQASTQLADLEHHAIASLLNHPSENLVNLYWDPRYCNYLLANLPLMSEFRKSMAELEVVCVPDEDSHWGFGFYRAQKRDEETLSALPEIQYEPIQQDKHAVVQPWLAAALDTVLSDLAEQLNVVSPEWIAPTYLCASLPQYDGKLDWHYNEVYGFW
>NZ_CP003328.1|WP_005753664.1|293458_295315_+|response-regulator
MKNIKYFTQKYVDWVIRLGRLRFSILGVIVLAILALCTQALLSLFIIGEVYWVDMIRSVVFGLISAPFVIYFFTVLVEKLERSRLGLAKMVENLRKEVSERVLAEKKLSIALDNIEKTSRDKTRLMATISHELRTPLNGIIGLSRILLDEKLTETQQNYLKTIHVSAISLGHIFSDIIDLEKIDARRIELNAKAVELNSFLNDISNVARLLAQQKKLAFQLVTDKNLPTWFMVDYARLSQILWNLIGNAVKFTQEGRITLNVKRVSEYQISFSVSDTGIGIPANELPRVFEMYYQVQSSGHKPLGSGIGLAISQTIAQLMGGDLYATSEMGKGSCFTLMLPVKEVEKPVRVQNQMPSTLNILLVEDIEVNVVVAKSVLEKLGYVVDVAMTGQQAIEKFEQQYYDLLLLDIQLPDMSGFAVAKYLREGYENGQYDFLPPLIALTANVMHDKKEYQAQGMDDVLRKPLSIEELTACLVEYFGHDVSLCLETPTTHQITQDATHFDVKMLSELVEMLGTDFVLKNLALFKETMPEYMQALMTAYSVYQQDESQKADVLSCAHKIKGAAASVGLKRIQQIAAQAQDPEQGEWTENIHDWVQQLAQYWLLDVEALERYLNKSV
>NZ_CP003328.1|WP_005725867.1|295455_296046_+|hypothetical-protein
MKIFAVLSAFLMPFVVPNTTVNGYKDLRFGMTIEQAKETKLCEDQWHLPADDDWRRVVRGYWVCDKFRFDDGYAVARLRFIGGQLKSIELKMPEYPKYPAELLLHVLEEKYGKTIEVEQRDLIEEDILQGKIRKRRKNESALLDTYQFAKGTVSLTLLTYNGIPQPAEIIYSAPELLLLEKKLEDRPQRRTLLRDL
>NZ_CP003328.1|WP_014325849.1|296109_296913_-|inositol-1-monophosphatase
MNPMLNIAIRAARKAGNVIAKGYERRDALQTTLKSTNDYVTNIDKASEEAIIEVIRKSYPDHTIITEESGALEGKDSDIQWVIDPLDGTTNFVKGLPHFSVSIAIRVKGRTEVGVVYDPIRNELFTAVRGEGAKINDMRLRVENKRDLAGTVLTTGFPFKQTRLMPMQFAMMNNLIQDCADFRRMGSAALDLCYVAAGRVDGYFEVGVKAWDIAAGDLIVREAGGLVCDFNGGHSYLTSGHLVAAAPRIVKEILNKIQPCLSDEFKK
>NZ_CP003328.1|WP_014325850.1|297126_297843_+|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ
MLENIRIVLVETSHSGNIGSAARAMKTMGLNQLYLVAPKQPLDEHAIALSAGAEDVLKQAKIVASFDEAVADCALVIGTSARLRHLQNSLIEPRECGTHAIVYAKQAPVAIVFGRERIGLTNEELLKCRYHLTIPANPDYSSLNLAMAVQLICYELRLAFLSQQAMTESLSTIDNTYPTHTEIEHFFQHTERLYTALGFIQNQGVMPKLRRLYQRVQLEKNELNILRGMLTAVEKRLK
>NZ_CP003328.1|WP_005721326.1|297921_298386_+|Fe-S-cluster-assembly-transcriptional-regulator-IscR
MKLTSKGRYAVTAILDIALNSNRGPVSLSDISERQHISLSYLEQLFAKLRRHGLVKSVRGPGGGYQLGLPANRISVGMVINAVNENIDVTRCLGRGDCQEGTECLTHSLWKELSLRIEAFLNEITLEELVEKNRQKRATIEFRGDFDNLIILDN
>NZ_CP003328.1|WP_005721328.1|298433_299648_+|IscS-subfamily-cysteine-desulfurase
MKLPIYLDYAATCPVDERVAKKMMEYLTVEGNFGNPASRSHKFGWQAEEAVDVARNHIADLIGADSREIVFTSGATESDNLAIKGAAHFYQSKGKHIITCKTEHKAVLDTCRQLEREGFEVTYLNPKSDGLIDLEELKNAMRDDTILVSIMHVNNEIGVIQDIAAIGELCRARKILFHVDATQSVGKLPINLAELKVDLMSMSSHKLYGPKGIGALYVSRKPRVRLEAIIHGGGHERGMRSGTLPVHQIVGMGEAYRICKEEMASEMPRLKALRDRLYNGLKDIEETYVNGSMEHRLDSNLNISFNYVEGESLMMALRDIAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFTLGRYTTEEEIDYTIELVKNAVAKLRELSPLWDMFKEGIDLNTIEWTHH
>NZ_CP003328.1|WP_005721377.1|299879_300266_+|Fe-S-cluster-assembly-scaffold-IscU
MAYSNKVIDHYENPRNVGSLDKKDANVGTGMVGAPACGDVMQLQIKVSEEGIIEDAKFKTYGCGSAIASSSLITEWVKGKSLDEAQAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYKAKKEAK
>NZ_CP003328.1|WP_005721379.1|300335_300659_+|iron-sulfur-cluster-assembly-protein-IscA
MGISLTETAADRVRTFLANRGKGIGLRLGIKTSGCSGLAYVLEFVDELNPEDQVFEQHGVKIIVDAKSLVYLDGTELDFAKEGLNEGFKFNNPNVKDQCGCGESFHV

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Crispr_ID: NZ_CP003328_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003328_2

1549120-1550407

Unclear

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTATACGGCAGTTAAC	CRISPRCasFinder
TTTCTAAGCTGCCTATACGGCAGTTAAC	CRT
TTTCTAAGCTGCCTATACGGCAGTTAAC	PILER-CR

21 spacers

cas3

The CRISPR arrays of NZ_CP003328_2

>merge|NZ_CP003328|2|1549120-1550407|CRISPRCasFinder,CRT,PILER-CR
AATTGAAACTGCCTATACGGCAGTTAACACCAATCTGATAATCGAGCCAAGATCGCTTTATTTCTAAGCTGCCTACACGGCAGTTAACAAGAGCAGAAAACAGAAGAATTGGAAGATGACTTTCTAAGCTACCTACACGGCAGTTAACAGTGTAATTCCGCTCCGTTGCTTAAAATAATCTTTCTAAGCTGCCTACACGGCAGTTAACGTATGAGTTCGGCATTTGCAGAGCTTAAAGCTTTTCTAAGCTGCCTACACGGCAGTTAACTTGATCCTTTTACGCGTAAACAGAATGCTTTTTTTCTAAGCTGCCTATACGGCAGTTAACTATTCAGAATCAAAACGAATACCCAAAATTGCTTTCTAAGCTGCCTATACGGCAGTTAACCGGGTGCGCAAATGGTTTGCGACAAAAGGCGATTTCTAAGCTGCCTATACGGCAGTTAACAACTATAATAAAAAAGGCTGTTGCCATTGCTATTTCTAAGCTGCCTATACGGCAGTTAACACGTGATGACGTGCTCATCTGCGCTGTGGCTTTTTCTAAGCTGCCTATACGGCAGTTAACGCTTACGGGGATTAACGTGAGCGCGGACACTTTTTCTAAGCTGCCTATACGGCAGTTAACCGTTTCTTCATTTCGCTTACGCTCCCGTTGATTTTCTAAGCTGCCTATACGGCAGTTAACTTTGATCCATCAAGAAGTGATCATGTGTTCATTTTCTAAGCTGCCTATACGGCAGTTAACGAATACGCGGGGACAGCTTACAACCTTGCAACTTTCTAAGCTGCCTATACGGCAGTTAACAAAGGCAATATGCGACAAATTCCAGAGATTTTTTTCTAAGCTGCCTATACGGCAGTTAACGCTCGCGGAAATCTACCCCGATTTAGACACATTTTCTAAGCTGCCTATACGGCAGTTAACCTCGGGATAATCATCCACTGCTCACCTGAAATTTTCTAAGCTGCCTATACGGCAGTTAACTACGCCATTATGGCGACTGACTTCCGCGATAATTTCTAAGCTGCCTATACGGCAGTTAACACTTGTGCAAGGGTTGTGTGTTCATAGGCTTTTTTCTAAGCTGCCTATACGGCAGTTAACTAAAATTAAAACTATCGTCGCTTGCTTGTAGCTTTCTAAGCTGCCTATACGGCAGTTAACACTAGCGGAGGCTCAACAATGACGGAAGGTAATTTCTAAGCTGCCTATACGGCAGTTAACTGTGATTCTGGCTTGTGCAACCGGTATGAGTGTTTCTAAGCTGCCTATACGGCAGTTAAC

>NZ_CP003328|2|2|1549120-1550407|CRISPRCasFinder
AATTGAAACTGCCTATACGGCAGTTAAC	ACCAATCTGATAATCGAGCCAAGATCGCTTTA
TTTCTAAGCTGCCTACACGGCAGTTAAC	AAGAGCAGAAAACAGAAGAATTGGAAGATGAC
TTTCTAAGCTACCTACACGGCAGTTAAC	AGTGTAATTCCGCTCCGTTGCTTAAAATAATC
TTTCTAAGCTGCCTACACGGCAGTTAAC	GTATGAGTTCGGCATTTGCAGAGCTTAAAGCT
TTTCTAAGCTGCCTACACGGCAGTTAAC	TTGATCCTTTTACGCGTAAACAGAATGCTTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TATTCAGAATCAAAACGAATACCCAAAATTGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	CGGGTGCGCAAATGGTTTGCGACAAAAGGCGA
TTTCTAAGCTGCCTATACGGCAGTTAAC	AACTATAATAAAAAAGGCTGTTGCCATTGCTA
TTTCTAAGCTGCCTATACGGCAGTTAAC	ACGTGATGACGTGCTCATCTGCGCTGTGGCTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	GCTTACGGGGATTAACGTGAGCGCGGACACTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	CGTTTCTTCATTTCGCTTACGCTCCCGTTGAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TTTGATCCATCAAGAAGTGATCATGTGTTCAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	GAATACGCGGGGACAGCTTACAACCTTGCAAC
TTTCTAAGCTGCCTATACGGCAGTTAAC	AAAGGCAATATGCGACAAATTCCAGAGATTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	GCTCGCGGAAATCTACCCCGATTTAGACACAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	CTCGGGATAATCATCCACTGCTCACCTGAAAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TACGCCATTATGGCGACTGACTTCCGCGATAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	ACTTGTGCAAGGGTTGTGTGTTCATAGGCTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TAAAATTAAAACTATCGTCGCTTGCTTGTAGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	ACTAGCGGAGGCTCAACAATGACGGAAGGTAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	TGTGATTCTGGCTTGTGCAACCGGTATGAGTG
TTTCTAAGCTGCCTATACGGCAGTTAAC

>NZ_CP003328|2|2|1549120-1550407|CRT
AATTGAAACTGCCTATACGGCAGTTAAC	ACCAATCTGATAATCGAGCCAAGATCGCTTTA
TTTCTAAGCTGCCTACACGGCAGTTAAC	AAGAGCAGAAAACAGAAGAATTGGAAGATGAC
TTTCTAAGCTACCTACACGGCAGTTAAC	AGTGTAATTCCGCTCCGTTGCTTAAAATAATC
TTTCTAAGCTGCCTACACGGCAGTTAAC	GTATGAGTTCGGCATTTGCAGAGCTTAAAGCT
TTTCTAAGCTGCCTACACGGCAGTTAAC	TTGATCCTTTTACGCGTAAACAGAATGCTTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TATTCAGAATCAAAACGAATACCCAAAATTGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	CGGGTGCGCAAATGGTTTGCGACAAAAGGCGA
TTTCTAAGCTGCCTATACGGCAGTTAAC	AACTATAATAAAAAAGGCTGTTGCCATTGCTA
TTTCTAAGCTGCCTATACGGCAGTTAAC	ACGTGATGACGTGCTCATCTGCGCTGTGGCTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	GCTTACGGGGATTAACGTGAGCGCGGACACTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	CGTTTCTTCATTTCGCTTACGCTCCCGTTGAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TTTGATCCATCAAGAAGTGATCATGTGTTCAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	GAATACGCGGGGACAGCTTACAACCTTGCAAC
TTTCTAAGCTGCCTATACGGCAGTTAAC	AAAGGCAATATGCGACAAATTCCAGAGATTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	GCTCGCGGAAATCTACCCCGATTTAGACACAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	CTCGGGATAATCATCCACTGCTCACCTGAAAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TACGCCATTATGGCGACTGACTTCCGCGATAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	ACTTGTGCAAGGGTTGTGTGTTCATAGGCTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TAAAATTAAAACTATCGTCGCTTGCTTGTAGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	ACTAGCGGAGGCTCAACAATGACGGAAGGTAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	TGTGATTCTGGCTTGTGCAACCGGTATGAGTG
TTTCTAAGCTGCCTATACGGCAGTTAAC

>NZ_CP003328|2|2|1549780-1550407|PILER-CR
TTTCTAAGCTGCCTATACGGCAGTTAAC	TTTGATCCATCAAGAAGTGATCATGTGTTCAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	GAATACGCGGGGACAGCTTACAACCTTGCAAC
TTTCTAAGCTGCCTATACGGCAGTTAAC	AAAGGCAATATGCGACAAATTCCAGAGATTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	GCTCGCGGAAATCTACCCCGATTTAGACACAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	CTCGGGATAATCATCCACTGCTCACCTGAAAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TACGCCATTATGGCGACTGACTTCCGCGATAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	ACTTGTGCAAGGGTTGTGTGTTCATAGGCTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TAAAATTAAAACTATCGTCGCTTGCTTGTAGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	ACTAGCGGAGGCTCAACAATGACGGAAGGTAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	TGTGATTCTGGCTTGTGCAACCGGTATGAGTG
TTTCTAAGCTGCCTATACGGCAGTTAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003328.1\|WP_005758057.1\|1550554_1551883_-\|ATP-dependent-RNA-helicase-SrmB	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236877
NZ_CP003328.1\|WP_005752328.1\|1543795_1544815_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|131470
NZ_CP003328.1\|WP_025248518.1\|1547059_1548106_+\|lipopolysaccharide-heptosyltransferase-II	unknown	unknown	gnl\|CDD\|182835
NZ_CP003328.1\|WP_005724867.1\|1552755_1553460_-\|nicotinamide-riboside-transporter-PnuC	unknown	unknown	gnl\|CDD\|225742
NZ_CP003328.1\|WP_005724855.1\|1556719_1557379_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP003328.1\|WP_016504356.1\|1542327_1543770_+\|glycoside-hydrolase-family-32-protein	unknown	unknown	gnl\|CDD\|224536
NZ_CP003328.1\|WP_016504355.1\|1541363_1542290_+\|aminoimidazole-riboside-kinase	unknown	unknown	gnl\|CDD\|236514
NZ_CP003328.1\|WP_014326417.1\|1557442_1558012_+\|Der-GTPase-activating-protein-YihI	unknown	unknown	gnl\|CDD\|367878
NZ_CP003328.1\|WP_005752888.1\|1560641_1560977_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP003328.1\|WP_005758065.1\|1537226_1538813_-\|L-lactate-permease	unknown	unknown	gnl\|CDD\|224535
NZ_CP003328.1\|WP_014326416.1\|1553735_1556639_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP003328.1\|WP_005719208.1\|1558017_1558446_+\|DUF2489-domain-containing-protein	unknown	unknown	gnl\|CDD\|378470
NZ_CP003328.1\|WP_014326411.1\|1545043_1546468_+\|PTS-sucrose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|131051
NZ_CP003328.1\|WP_014326414.1\|1548102_1549068_+\|lipopolysaccharide-heptosyltransferase-RfaC	unknown	unknown	gnl\|CDD\|236809
NZ_CP003328.1\|WP_014326412.1\|1546583_1546991_+\|copper-chaperone-PCu(A)C	unknown	unknown	gnl\|CDD\|225403
NZ_CP003328.1\|WP_014326407.1\|1540566_1541178_-\|high-frequency-lysogenization-protein-HflD	unknown	unknown	gnl\|CDD\|225467
NZ_CP003328.1\|WP_014326419.1\|1559877_1560546_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380324
NZ_CP003328.1\|WP_005724904.1\|1539171_1540539_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NZ_CP003328.1\|WP_014326415.1\|1551994_1552708_+\|tRNA1(Val)-(adenine(37)-N6)-methyltransferase	unknown	unknown	gnl\|CDD\|226608
NZ_CP003328.1\|WP_025248519.1\|1558469_1559837_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236430

Protein	Function_ID	Function_description	E-value
NZ_CP003328.1\|WP_005758057.1\|1550554_1551883_-\|ATP-dependent-RNA-helicase-SrmB	gnl\|CDD\|236877	PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.	0
NZ_CP003328.1\|WP_005752328.1\|1543795_1544815_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|131470	TIGR02417, Fructose_repressor_Catabolite_repressor/activator., D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer. [Regulatory functions, DNA interactions].	0
NZ_CP003328.1\|WP_025248518.1\|1547059_1548106_+\|lipopolysaccharide-heptosyltransferase-II	gnl\|CDD\|182835	PRK10916, PRK10916, ADP-heptose--LPS heptosyltransferase RfaF.	0
NZ_CP003328.1\|WP_005724867.1\|1552755_1553460_-\|nicotinamide-riboside-transporter-PnuC	gnl\|CDD\|225742	COG3201, PnuC, Nicotinamide mononucleotide transporter [Coenzyme metabolism].	5.27246e-73
NZ_CP003328.1\|WP_005724855.1\|1556719_1557379_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	6.19774e-102
NZ_CP003328.1\|WP_016504356.1\|1542327_1543770_+\|glycoside-hydrolase-family-32-protein	gnl\|CDD\|224536	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism].	2.82868e-175
NZ_CP003328.1\|WP_016504355.1\|1541363_1542290_+\|aminoimidazole-riboside-kinase	gnl\|CDD\|236514	PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional.	0
NZ_CP003328.1\|WP_014326417.1\|1557442_1558012_+\|Der-GTPase-activating-protein-YihI	gnl\|CDD\|367878	pfam04220, YihI, Der GTPase activator (YihI). YihI activates the GTPase activity of Der, a 50S ribosomal subunit stability factor. The stimulation is specific to Der as YihI does not stimulate the GTPase activity of Era or ObgE. The interaction of YihI with Der requires only the C-terminal 78 amino acids of YihI. A yihI deletion mutant is viable and shows a shorter lag period, but the same post-lag growth rate as a wild-type strain. yihI is expressed during the lag period. Overexpression of yihI inhibits cell growth and biogenesis of the 50S ribosomal subunit. YihI is an unusual, highly hydrophilic protein with an uneven distribution of charged residues, resulting in an N-terminal region with high pI and a C-terminal region with low pI.	8.55528e-59
NZ_CP003328.1\|WP_005752888.1\|1560641_1560977_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.65249e-05
NZ_CP003328.1\|WP_005758065.1\|1537226_1538813_-\|L-lactate-permease	gnl\|CDD\|224535	COG1620, LldP, L-lactate permease [Energy production and conversion].	6.14413e-167
NZ_CP003328.1\|WP_014326416.1\|1553735_1556639_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP003328.1\|WP_005719208.1\|1558017_1558446_+\|DUF2489-domain-containing-protein	gnl\|CDD\|378470	pfam10675, DUF2489, Protein of unknown function (DUF2489). This is a bacterial family of uncharacterized proteins.	1.12596e-47
NZ_CP003328.1\|WP_014326411.1\|1545043_1546468_+\|PTS-sucrose-transporter-subunit-IIBC	gnl\|CDD\|131051	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component. This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).	0
NZ_CP003328.1\|WP_014326414.1\|1548102_1549068_+\|lipopolysaccharide-heptosyltransferase-RfaC	gnl\|CDD\|236809	PRK10964, PRK10964, lipopolysaccharide heptosyltransferase RfaC.	0
NZ_CP003328.1\|WP_014326412.1\|1546583_1546991_+\|copper-chaperone-PCu(A)C	gnl\|CDD\|225403	COG2847, COG2847, Copper(I)-binding protein [Inorganic ion transport and metabolism].	1.12449e-42
NZ_CP003328.1\|WP_014326407.1\|1540566_1541178_-\|high-frequency-lysogenization-protein-HflD	gnl\|CDD\|225467	COG2915, COG2915, Uncharacterized protein involved in purine metabolism [General function prediction only].	9.09394e-109
NZ_CP003328.1\|WP_014326419.1\|1559877_1560546_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|380324	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB. NAD(P)H:FMN oxidoreductase family. This domain catalyzes the reduction of flavin, nitrocompound, quinones and azo compounds using NADH or NADPH as an electron donor. The enzyme is a homodimer, and each monomer binds a FMN as co-factor. This family includes FRase I in Vibrio fischeri, wihich reduces FMN into FMNH2 as part of the bioluminescent reaction. The family also includes oxygen-insensitive nitroreductases that use NADH or NADPH as an electron donor in the ping pong bi bi mechanism. This type of nitroreductase can be used in cancer chemotherapy to activate a range of prodrugs.	3.45531e-76
NZ_CP003328.1\|WP_005724904.1\|1539171_1540539_-\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NZ_CP003328.1\|WP_014326415.1\|1551994_1552708_+\|tRNA1(Val)-(adenine(37)-N6)-methyltransferase	gnl\|CDD\|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	2.77606e-93
NZ_CP003328.1\|WP_025248519.1\|1558469_1559837_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236430	PRK09249, PRK09249, coproporphyrinogen dehydrogenase.	0

>NZ_CP003328.1|WP_014326414.1|1548102_1549068_+|lipopolysaccharide-heptosyltransferase-RfaC
MKICLIKTSSMGDILHSLPALTDAQRALPNLQVDWVVEESFAEIPHWHSAVRQVIPIALRRWRKTPFTALTRKQWKTYRTLLQSEQYDAVIDAQGLLKSALFATRLARGTRHGYDRHSIREPIAACFYDKKYAISYQQHAVERIRQLFAQSLNYPLPHTQGDYGIARHFPQHAQTMPYVLFFHGTTRQDKFLPDKQWRTLAEKLTAQGIQIHVPWSNPQEKQRAERIAQGLDLVTILPKSTLSELAQQIVNASAVVSVDTGLAHLSAALDKTNLTLYGATDPKLIGSYGKNQHYLVAESMDKIEADEIFQKLTALLSLNTI
>NZ_CP003328.1|WP_025248518.1|1547059_1548106_+|lipopolysaccharide-heptosyltransferase-II
MHILIIGPSWVGDMMMSHSLYQTLKQQYPQCEIDVMAPNWCKPLLERMPEVRQAITMPLGHGAFALGDRYRLGKALRHQYDMAIVLPNSLKSAFIPFFAKIPLRRGWKGESRYLFLNDLRSNKKDYPMMVQRYIALAFEKGAVPKAEDLPRPVPYLTVDPITQQHTLKKFEKQTALISPRPSIGFCPGAEFGPAKRWPHYHYAKLAEMLIQQGYAIRLFGSAKDEAVGEEIRQALPETMRHFCINLVGQTSLNEAVDLIADCTAIVTNDSGLMHIAAAVQRPLVALYGPTSPTYTPPLSEKAVIIRLIEDGLIKVRKGKDSDEGYHQSLIDIQPELVFDKLTGLLANT
>NZ_CP003328.1|WP_014326412.1|1546583_1546991_+|copper-chaperone-PCu(A)C
MKSLTQLLFILTALLPTSLFAHIHVEQAQMFSAKAGEPSAIFMNIHNTGNEDVSLALVQSDIRADIVLHGTQHGKMIEVTGINLPAHQMTALKRGGLHIMVFNVEQDLNAGDSFPLRLLFDNGEIMHIEAKIIQY
>NZ_CP003328.1|WP_014326411.1|1545043_1546468_+|PTS-sucrose-transporter-subunit-IIBC
MNFSQIAQQVIDKLGGKDNISAAAHCATRLRIVVKNENLIDKKGIENIEGVKGQFAVAGQYQIIFGSGTVNKVYAELSKLLGIGDMTTSEVAAAGTEKQGLLQRLVKGLADIFVPIIPAIVAGGLLMGIHSMLTAKGFFVEEKNVVDLYPAIADLVDFINTIANAPFVFLPVLLGFSATRKFGGNPFLGAALGMLLVHPALSDGWNYALTLTKGNIQYWHIFGLEIERVGYQGTVIPVLVASWVLATLEKNLRKVVPSFLDNLITPLFALFITGLLAFTVIGPIGREAGSLISTGLTWLYDTLGFVGGAIFGTLYAPIVITGMHQTFIAVETQLLAEVARTGGTFIFPIAAMSNIAQGAACLGAAYVMKDAKVRGIGVPSGISALLGITEPAMFGVNLRYRYPFISAMIGAGISSAVIALFNVKAIALGAAGLPGIPSIKPDSLAMYCVGMLISASIAFTLTVILGKRAQLKAE
>NZ_CP003328.1|WP_005752328.1|1543795_1544815_+|substrate-binding-domain-containing-protein
MSITNKKRITLSDIAKCCGLSTTTVSMILNNRGEEFKIKAETCQRVKAIAEQQGYRANVYAKSLKMQRSNVIGFVIPDLTNYGFACTAKILEKQCRENGLQLIIACSDDNPQQEKLAIERLLDRQIDFLITAPTHQDPSYYQKIGQHTPILQLDRYVPDLALNYVISNDSEHITALICRLCDQYQLTEFMYFGGQRTLSPSESRLAGFLQGLKQANLNLKKEWILHRTYQPESGYQMLAETEAKLGRLPQAIFTASYTLLEGVLRYLTEQKKMDLLLNRQLHLATFDDHDILNALPFHIHSIKQNHPQLAQQIFQHIMRYFAGKKSPNQKIDCDVIYRD
>NZ_CP003328.1|WP_016504356.1|1542327_1543770_+|glycoside-hydrolase-family-32-protein
MYIFNQGKYKSLHAQEVGELAQIRQHVLRDTQFRPTYHLAPETGLLNDPNGLVFDGEKYHIFYQWFPYAAIHGMKHWKHFITYDFHHFQAADPLIPDELFESHGCYSGGALLWQDQIVAFYTGNTRNAENQRIPHQNIAIFKKDGTLLKKRCLLNQAPTGYTEHVRDPKPFITEEGKIRFILGAQREDLSGTALIYEMTDLDATPQLIGEFKLPDFDNQQVFMWECPDLLKLQEQDLFLWSPQGKAQKTYCFQNHYHATYALGQYANLHFSAQHIEELDYGFDFYAPQSIQGSEGIYYAWVGLPDLTYPTDEYQWHSMLSLPRQFSIQQGILYQRPIPQVYAQCLPAHKYWVEGKQQIPHLDRSYVAFDAENQPFTLRFFTNQRGQQLILRYQNGILTLDRTYTTQTALMQQFGEQRHCILPQLNHVEIFFDRSVVEIFLNQGEKVMTSRFFIADRENALDSSRPLCVSVAELKPIILTP
>NZ_CP003328.1|WP_016504355.1|1541363_1542290_+|aminoimidazole-riboside-kinase
MGKIWVLGDAVVDLIPEGENTYLRCAGGAPANVAVGIARLGATTGFIGRVGDDPLGRFMLNKLQQENVCTQYMHLDPKQLTSTVIVDLKEGERSFTFMVNPSADQFLELSDLPHFNPNDWLHCCSIALINEPSRSSTFAAIHRIKAEGGFFSFDPNLRESLWNSPAEMKTVVNQVVALADVLKFSEEELLFLTDSDTLSDATAKLTQHYPDKLIIVTLGKLGATYYLQGKSQLISSKKALIPVDTTGAGDAFVSGLLFGISQVKNWQNPTALVEIIKQANACGALATTAKGAMSALPNKQQLDAFLAE
>NZ_CP003328.1|WP_014326407.1|1540566_1541178_-|high-frequency-lysogenization-protein-HflD
MANYYDITLALAGVCQAAKLVQQFAHEGQADQAAFETSLNTLLQIYPEDTLAVFGGKAQNLKLGLETLLEQMHGTGSDLSRYWISLLALESKLNKDPHAKAELARRIQYLPTQLEHDDLLDEQMLSTLASIYVDVISPLGKKIQVTGSTLYLQQLAMHHRIRACLLAGIRSAVLWRQVGGTKWQVLFSRRKIIAMAKQIYSSL
>NZ_CP003328.1|WP_005724904.1|1539171_1540539_-|adenylosuccinate-lyase
MQLNALTALSPIDGRYQDKVSSLRSIFSEFGLLKFRVTVEVRWLQKLAATDQIQEVSLLSQEANDYLNHIVENFSVQDAERIKEIERTTNHDVKAVEYFLKEKSEALPELAKISEFIHFACTSEDINNLSHALMLKTAREEVILPEWQNLIADISALANEYKTIPLLSRTHGQPASPSTIGKEMANVVYRLQRQFKQLQQIDILGKINGAVGNYNAHLSAYPDIDWHQFSEEFVTSLGLTWNPYTTQIEPHDYIAEFFDNVARFNTIIIDFDRDLWGYIALNHFKQRTIAGEIGSSTMPHKVNPIDFENSEGNLGLANAVMAHLGAKLPVSRWQRDLTDSTVLRNLGVGLGYCLIAYAATRKGISKLEVNEQHLRDELDQNWEVLAEPIQTVMRRYGIEKPYEKLKALTRGKRVDAEAMREFIETLDIPAQEKIRLQQMTPATYIGAAVELVEKL
>NZ_CP003328.1|WP_005758065.1|1537226_1538813_-|L-lactate-permease
MVFFLSILPIVLLIYLMVKRNSLPSYIALPLIAVLTYLLQAFYFGTDLTRLNANVIAGLIATQTPITIIFGAILFNRMMEVSGSTDVLRKWLANINPNPVAQIMIIGWAFAFMIEGASGFGTPAAIAAPILMGLGFKPLQVAMLALVMNSVPVSFGAVGTPTWFGFGPLGLSEDVVLEVGQKTAFIHFIAAFVIPVLALRFLVSWQQIKQNLVFIYISILACTIPYFLLAQVNYEFPALVGGAIGLFISILVANKGIGVSKTAQAEIQLEKVEFGVLVKALFPTMMLIAILIVTRIHQLGIKQLLNDATTWFSVSLGAFGEFKVSQALILSLNNILGQGINESYKTLYVPSLIPFIVTVIISIFVFKLNGTKAKTIAVSTYQQTKKPFFALLGALVMVKLMLVGNENYDSMVITIGKTFADVTGDKWVYFSSYLGAIGAFFSGSNTVSNLTFGGIQLSIAETTGMSVPLILALQSVGGAMGNMVCLNNIIAVCTVLNVSNQEGSILKRTVVPMFLYGVIAALVAVVIY
>NZ_CP003328.1|WP_005758057.1|1550554_1551883_-|ATP-dependent-RNA-helicase-SrmB
MTLATFQDFDLAPALLKALAKKGYTRPTAIQQETIPAAMEQRDVLGSAPTGTGKTAAFLLPAIQHLLDYPRRKPGAPRILILTPTRELAMQVAEQAESFAEFTNLSIATITGGVAYQNHGEIFNSNQDIVVATPGRLLQYIKEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQTLLFSATLEGELLVDFASRLLTDPVQIDAEPSRRERKKIQQWYYHADSNEHKIKLLARFIDEEQVSRGIVFVRRREDVRELSETLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGIVTVLVATDVAARGIDIEDVSHVMNFDLPYSADTYLHRIGRTARAGKKGVAVSFVEAHDYKLLGKIKRYTQELLKARIIEGLAPRTKAPKEGEVKTVSKKQKARIKAKREEKQKQEQKKKVKLRHKDTKNIGKRRKSNTPPANAE
>NZ_CP003328.1|WP_014326415.1|1551994_1552708_+|tRNA1(Val)-(adenine(37)-N6)-methyltransferase
MSAKQNGFTFKQFHIEHHRCAMKVGTDGILLGAWADVSQAERILDLGTGTGLIALMLAQRSTKESEIHAVELDQAAYLQAQANIHASPWAQRVHVYQQDAAEFCRNAVNKFDLIVANPPYFPQGVDCATPQRDLARYTATHRHVDWLNWASHCLSEQGKISMVLPFEAGETLLKQTALYCIARCEVITKKGKAPQRLLLTFSLQAQPLQPSQLIIYDESNRYHPDFIGLTKDFYLAF
>NZ_CP003328.1|WP_005724867.1|1552755_1553460_-|nicotinamide-riboside-transporter-PnuC
MNLQAVKNEFLGGWKPFEVAWLSLFLIAQIVIYIQNPDSILGMISGISGILCVVFVSKGKVSNYFFGLIFAYTYFYVAWQANYLGEMNTVLYVYIPAQFIGYFLWRENLQKGSEGAESVIAKSLTLKGWAIVLGTITIGTLLFVQALNAAGGSSTGLDGLTTVIVVVAQLLMILRYREQWLLWIALNVISIVLWTQAKEGSLAMVTMYSAYLLNSLYGYYNWTKLEKAHRQSVQ
>NZ_CP003328.1|WP_014326416.1|1553735_1556639_+|RNA-polymerase-associated-protein-RapA
MTFAVGQRWMSESENNLGLGLIVAIDMRTVTILFPASEEQRIYALNSAPLTRVLFQIGDEIVHHEGWKGNVLDILENNGVAFYLLKRQDNGEEITIQERDIAHQMTFSKPQDRLFTTQIDRNEHFTLRYQALTHQQAQFQSPLRGLRGIRAGLIPHQLHIAREVGQRTAPRVLLADEVGLGKTIEAGMILQQQLFAEKVERVLIIVPETLQHQWLVEMLRRFNLHFALFDEERCADFEDPASALWINPFSTESQIICALDWLCEKPKRVEQLLEAGFDMLIVDEAHHLGWSEHNPSLEYQLVEQLARQIPAVLLLTATPEQLGQESHFARLSLLDPDRFYDYQAFVQEQQQYQPVADAVQSLLADKPLSTVEKNHIADLLSEQDVEPMLKVIDSQAHDEQKALARQELIDNLIDRHGTSRVLFRNTRQGVKSFPHRTYNQITLELPKQYNNAANVLAMLGEKSENDSFYPEQMFQKLNPDARWWEFDPRLAWLITFLKNHREEKVLVICRHANTAIQLEQALREKEAIRAAVFHEKLSIVERDRAAAYFAQQEDGAQVLLSSSIGSEGRNFQFASHLVLFNLPDDPDLLEQCIGRLDRIGQSRDIQIHVPCFADTAQVVLARWYHEGLNAFEETCPMGMTLFETHQTQLNKFLQKPTALEGFAEFVSLTRKQQHELKQALEKGRDRLLELNSNGGEQAQQLATDIAEQDSTTELVNFTLNLFDIIGVDQEDLGEKSIVITPASNMLVPDFPGLKEEGATVTFDRQLSLAREDVEFMSWDHPLIRHGIDLITSGDIGKSAVSLLINKALPAGTLLLEMIYVVEAQAPKGLQLTRFLPPTPIRLLLDQKGNNLAEQVSFNALQKQLKPIGKNMANKVVKMVRPNIEQLVKLSEQKIVAQAQQIIHNTQQLADQTLSAELNRLTALQAVNKNIRQDEVDALENIRSQSLAQLQQATWRLDSLRVIVSNKE
>NZ_CP003328.1|WP_005724855.1|1556719_1557379_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MALISYTPPTDPYLDIVHYDDHFVVINKPSGLLSVPGNQPQYYDSAMSRVKEKYGFCEPAHRLDMSTSGLILFALSKAADRELKRQFREREPKKHYQALVWGHLEEDQGEVNLPLICDWENRPRQKICFERGKPALTLYEVLARYPNNTTRVKLTPITGRSHQLRLHMLALGHPILGDKFYAPPQAKALSPRLCLHAEQLAFRHPITQEWLSFSAPPAF
>NZ_CP003328.1|WP_014326417.1|1557442_1558012_+|Der-GTPase-activating-protein-YihI
MARKKKTRRVSDIMPARKVDKKVELPKGKPGKKLTRYELDAKAREDKKKKKRKGLASGSRHSATENNNKHQALEKKDPRIGSRKKVPLVVEFVNKPEKGMTIPPMKLEEKLPKQDPMLELELLESNECLNQLLDDLEAGKTLSAEDQQFVDDCLDRIAELMDELGISEDDDPEEDLLRTFEKIDINQFR
>NZ_CP003328.1|WP_005719208.1|1558017_1558446_+|DUF2489-domain-containing-protein
MWTNILLILAVLVIVAMASYAGYLLLALQKQKKAIANMRTARSQRLTESIVIIAKAMQNGDCNHSEGVIRLKMLLDPLGKKLKNYQAMYQLYEVVMEMPTHEKRRELKKNERMRLDLQRESAEAELEQKIRLELQQLLIDMK
>NZ_CP003328.1|WP_025248519.1|1558469_1559837_+|oxygen-independent-coproporphyrinogen-III-oxidase
MSDIVWDLALIQKYNQSGPRYTSYPTALEFNENYTNQDFIQATKRYPNRPLSLYVHIPFCHKLCYFCACNKTITRHQHKADIYLDFLEREIENRASLFKNRIATQVHWGGGTPTYLTEQQSARLMAMLRKHFTIAPDAEISIEMDPREIELNMLDHLRRIGFNRMSMGVQDFNKDVQKAINRVQDEDFIEALLKRARELGFQSTNLDLIYGLPLQNVDSFMFTLQKVIALNSDRLSVFNYAHLPSRFAGQAKIKNEQLPAPETKLTILQKMIETLGDAGYKFIGMDHFAKPDDELAIAQKQGVLHRNFQGYTTQEECDLLGLGVSAISLLGDTYAQNQKELKHYYTAIDNTGIALHKGFAMSEEDCLRRDVIKQLICNFKLDYQPIEQQYGIQFTSHFAEDLKLLAPLSEDGLLTIGEKDIQVSAKGRLLIRNICLCFDTYSREQAKRQQFSRII
>NZ_CP003328.1|WP_014326419.1|1559877_1560546_+|NAD(P)H-dependent-oxidoreductase
MSISKTDILNAFHFRHACKAYDPSKKISEEDFRFILETGRLSPSSFGFEPWKFLVIENPDIKALIRDTAWGAKDKVMDCSHFVVVLVRQPETLLADGEYVQHMMRDIHHIPEEMRKIRQNFYRTFSEQDFALTENPKAFYDWACRQSYIALANMLTSAAMIGIDSTPIEGFPLEKMDHIFVEQGLYDPKTYKLSVMIAFGYRLNEPKAKTRQAFDDVVEWVR
>NZ_CP003328.1|WP_005752888.1|1560641_1560977_-|helix-turn-helix-transcriptional-regulator
MQITRRNASTKGASVAEIDRKKVRNEIIQAMLMGELSQGEALRKLRIEMFGINQQHYIQLVKVSRQTLSNIENDKGNYSVETINKVFKPFGLELGLVPVSKALLKELFSTA

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Crispr_ID: NZ_CP003328_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP003328_3

1843745-1843897

Orphan

Consensus_repeat	Method
TAAAAACTAGAAATAAATGTCATAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP003328_3

>merge|NZ_CP003328|3|1843745-1843897|CRISPRCasFinder
TAAAAACTAGAAATAAATGTCATAATTAGCTATTCATTCAACGAAAGGATAAGGGTTTATCCTATTTTTTACGACATAAAAACCAGAAATAAATGTCATAAAAACTAGAAATAGCTGTCAGATTATTTAGAAAACAAGAAATAGGTGTCAAAT

>NZ_CP003328|3|3|1843745-1843897|CRISPRCasFinder
TAAAAACTAGAAATAAATGTCATAA	TTAGCTATTCATTCAACGAAAGGATAAGGGTTTATCCTATTTTTTACGACA
TAAAAACCAGAAATAAATGTCATAA	AAACTAGAAATAGCTGTCAGATTATTT
AGAAAACAAGAAATAGGTGTCAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP003328.1\|WP_017357766.1\|1850266_1851838_-\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|380294
NZ_CP003328.1\|WP_005757684.1\|1832229_1835436_+\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP003328.1\|WP_012478339.1\|1846481_1847369_+\|TniB-family-NTP-binding-protein	unknown	unknown	gnl\|CDD\|377533
NZ_CP003328.1\|WP_012478338.1\|1847326_1848445_+\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NZ_CP003328.1\|WP_012478341.1\|1843901_1844564_+\|heteromeric-transposase-endonuclease-subunit-TnsA	unknown	unknown	gnl\|CDD\|378037
NZ_CP003328.1\|WP_012478337.1\|1848405_1849863_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003328.1\|WP_012478336.1\|1849980_1850205_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003328.1\|WP_005752067.1\|1829394_1830552_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP003328.1\|WP_005757690.1\|1839211_1839898_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003328.1\|WP_026042305.1\|1851891_1852548_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP003328.1\|WP_025248534.1\|1840004_1842566_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273807
NZ_CP003328.1\|WP_010907196.1\|1837122_1838352_+\|murein-hydrolase-activator-EnvC	unknown	unknown	gnl\|CDD\|227278
NZ_CP003328.1\|WP_001339197.1\|1852682_1853891_+\|IS4-like-element-ISVsa5-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP003328.1\|WP_012478340.1\|1844553_1846482_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NZ_CP003328.1\|WP_015702554.1\|1830636_1831506_+\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NZ_CP003328.1\|WP_015702556.1\|1838348_1839191_+\|divergent-polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|225416
NZ_CP003328.1\|WP_005718066.1\|1836256_1836940_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|172608
NZ_CP003328.1\|WP_035689358.1\|1853900_1854272_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|185076
NZ_CP003328.1\|WP_015702555.1\|1831534_1832158_+\|DJ-1/PfpI-family-protein	unknown	unknown	gnl\|CDD\|153233
NZ_CP003328.1\|WP_014325726.1\|1835671_1836136_+\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616

Protein	Function_ID	Function_description	E-value
NZ_CP003328.1\|WP_012478341.1\|1843901_1844564_+\|heteromeric-transposase-endonuclease-subunit-TnsA	gnl\|CDD\|378037	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal. The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5' end of the transposon is carried out by TnsA, and breakage and joining at the 3' end is carried out by TnsB. The N terminal domain of TnsA is catalytic.	7.90649e-18
NZ_CP003328.1\|WP_012478339.1\|1846481_1847369_+\|TniB-family-NTP-binding-protein	gnl\|CDD\|377533	pfam05621, TniB, Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.	2.17903e-97
NZ_CP003328.1\|WP_012478338.1\|1847326_1848445_+\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	1.8373e-17
NZ_CP003328.1\|WP_005757684.1\|1832229_1835436_+\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP003328.1\|WP_005752067.1\|1829394_1830552_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP003328.1\|WP_017357766.1\|1850266_1851838_-\|N-6-DNA-methylase	gnl\|CDD\|380294	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX. This protein, PglX, is a site-specific DNA methyltransferase associated BREX (bacteriophage exclusion) type 1 systems. The phage resistance appears not to be through restriction-modification, as phage DNA appears not to get degraded, but it does manage to inhibit phage replication.	7.03455e-36
NZ_CP003328.1\|WP_025248534.1\|1840004_1842566_-\|TonB-dependent-receptor	gnl\|CDD\|273807	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein. This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	5.38741e-23
NZ_CP003328.1\|WP_010907196.1\|1837122_1838352_+\|murein-hydrolase-activator-EnvC	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	5.89915e-137
NZ_CP003328.1\|WP_001339197.1\|1852682_1853891_+\|IS4-like-element-ISVsa5-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	7.26216e-11
NZ_CP003328.1\|WP_012478340.1\|1844553_1846482_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.85711e-13
NZ_CP003328.1\|WP_015702554.1\|1830636_1831506_+\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	1.47455e-95
NZ_CP003328.1\|WP_015702556.1\|1838348_1839191_+\|divergent-polysaccharide-deacetylase-family-protein	gnl\|CDD\|225416	COG2861, COG2861, Uncharacterized protein conserved in bacteria [Function unknown].	2.8717e-116
NZ_CP003328.1\|WP_005718066.1\|1836256_1836940_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|172608	PRK14118, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase.	2.91767e-174
NZ_CP003328.1\|WP_035689358.1\|1853900_1854272_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|185076	PRK15121, PRK15121, MDR efflux pump AcrAB transcriptional activator RobA.	6.78577e-51
NZ_CP003328.1\|WP_015702555.1\|1831534_1832158_+\|DJ-1/PfpI-family-protein	gnl\|CDD\|153233	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	3.0781e-75
NZ_CP003328.1\|WP_014325726.1\|1835671_1836136_+\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	5.24801e-42

>NZ_CP003328.1|WP_025248534.1|1840004_1842566_-|TonB-dependent-receptor
MNKSKKILGYILPLILPLYSYAESTELDVISVETEAFKEKDKVFLKQSASSTRTQFQTATQSLDSVLRSVPGSFTQIDKSSGTVSVNVRGGTGFGRVNTMIDGVSQTFYASSTDSGSRNSSTSQFGSLIDPGFLSRVEIDRGSFEGSHGANTLLGSAHFKTIGVKDLVAESRQLGFMGKYLWGSNATEPQVLGAVAFKQNFENERWLGLLYGFSERHLSQDYRIGGGRKVTESSIDLTGLDENDREQTDTSPFDATHVRQRPISHLAKLEYGDRYQQGTLSYRQYQTRVGGRSIRNNNYQFNYHLALPDISWLDFNLLLARNVSSQKYPEGTMIIGKTLLTPLIASNKADTFDVNNMFHFDLPFEATLKTRVGFHILKSRYFKNRDPSEELNINLEEGERTYDFDCLGLGCIRKSLGKATFQPNGKHNIITFYVDNHLSWKMFNLDYNINLSRYTLKGERLKYLPHYLSNMDNEINALTRKLRKGRSKDTKIQQQLLQLMSKRDDLKQHNCKEEEDGHEQCREVNFTLPDSSAGKMYNYSVTLSTHLHDLFTPFISYAKSHRAPNIREVFFSSVGDYGVNTNLKPETAKTIQFGINGYRDRLFSERDKLGYKVVYYNTHIKDFIYNSDNRQPLVAGKLIYLNDTNILHKNYSQRVKMTGIETEISYDMGNIYFNLTYAKQKNNQPVSFTDGSARTGGASNTNRLLQGFGASKISVLPESYGSLEIGTRFFDGKLDISTTAKYYGKSKRVLKQPLAIKSGDEKDTVKEQIRVTQDIPKQPIIFDLQISYEPIKNLVLKAEVQNVFDKRYINPLDANNDSASQSVFNIDLSDKTINVLNNFARGRTYVFTLSYQY
>NZ_CP003328.1|WP_005757690.1|1839211_1839898_+|hypothetical-protein
MKQKYLFIASMALAGCGSMSESNKYWIQYKDIDQSVKEVSFWSREQFHSPSDVKGTVYQRDNLTHLATSTPLGEIYHIYDVNHIPMNVIFLDTKTQRSLNPQNAQDMAQLSKATQFDFYEFGKGRIAHAVFSAKTGLCQDFKSKRGVALKMATNYYTDDSYKGYYVSVIHAIIRHNGQHTDFAYTPAFSIADTKALAMTQALEKQDGERVAQMNLKEKVTLLTNIVCQ
>NZ_CP003328.1|WP_015702556.1|1838348_1839191_+|divergent-polysaccharide-deacetylase-family-protein
MKTIGVKRVKSALLFGGFWISMALAQPAKLAIVIDDIGYHQKEDAQIYALPKEISVAIIPSAPHARQRNEQAYQQGRDILIHMPMQPLSHQRIEAGGLHVGMRQEDVQQRVQTAKAIVSHAIGMNNHMGSAATADAELMRKLMQELKVQDLFFLDSRTIGRSVAGKIAKEYGVQSLDRHIFLDDKDTYADVERQFQRAVHYAQKHGTAIAIGHPRKNTVAVLQAGLKHLPDNVQLVGMGRLWRSETGTAPKPLISLFNTMPAPTSSMPYQAVPMLRGIPQ
>NZ_CP003328.1|WP_010907196.1|1837122_1838352_+|murein-hydrolase-activator-EnvC
MWLRLNNVKTRRKLTALCCGLLCMSVNVFANDLSKIQQQIKQQEQKIAEQKKAQQKLQSHLKNQETQINQVITQLRQTETDLKESRKMISDTEKQIQRLEKQEREQKQKLAEQLDSAYRSAANPSALERMLSEEAKNADRLKQYYAHMNQARLALIDDLKATQTQLAQEKATMIAQQKAQQSQLSQQKKQQQDLQKVQQERQSTLKQLNRNLSRDETRLETLRANENALRQEIQRAEQAARQQEQREREAYAQKKQAEEKKTQKPYQPTAQEKQLMASSSGLGKPNKQYAYPVSGKLLNSFGATQMGELRWKGMVIGANAGTAVKSIADGRVILANWLQGYGLMVIIKHGENDLSLYGYNQSVVVKEGQFVKAGQKIAEVGSSGGQSQSSLYFEIRRKGVAVNPIGWLK
>NZ_CP003328.1|WP_005718066.1|1836256_1836940_-|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase
MELVFIRHGFSEWNAKNLFTGWRDVNLTERGIEEAKSAGKKLLEAGFEFDIAFTSVLTRAIKTCNIVLEESNQLWIPQVKNWRLNERHYGALQGLDKKATAEQYGDEQVHIWRRSYDISPPDLDPQDPHSAHNDRRYAHLPSDVVPDAENLKITLERVLPFWEDQIAPALLAGKRVLVTAHGNSLRALAKHIEGISDADIMDLEIPTGQPLVYKLDDNLKVVEKYYL
>NZ_CP003328.1|WP_014325726.1|1835671_1836136_+|IS200/IS605-family-transposase
MASKSNDDSSLSHTRWNCKYHIVFIPKYRRKAIYGKLRVDIGGILRQLCHYKNVEIIEAYAMKEHIHMLLRIPPKLAVSSFMGYLKGKSSLMIFERHANLKYKYGNRNFWAKGYYVSTVGLNTKIVEEYIRNQEKEDMIQDNLSKKEYMDPFKG
>NZ_CP003328.1|WP_005757684.1|1832229_1835436_+|carbamoyl-phosphate-synthase-large-subunit
MPKRTDINTILIIGAGPIVIGQACEFDYSGAQACKALREEGYKVVLVNSNPATIMTDPDMADVTYIEPIEWRTVEKIIEKERPDAILPTMGGQTALNCALDLSKNGVLKKYNVELIGAKEDAIDKAEDRGRFKEAMEKIGLSTPKSFVCHTLEEAWAAQSEVGFPTLIRPSFTMGGSGGGIAYNKDEFYAICERGFDASPTHELLIEQSVLGWKEYEMEVVRDKADNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNASIAVLREIGVDTGGSNVQFAINPENGEMIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLNELRNDITGGLIPASFEPSIDYVVTKVPRFAFEKFPQADDRLTTQMKSVGEVMAMGRTFQESLQKALRGLETGICGFNLMSEEPEKIRQELGNPGPIRILYVADAFGAGFTLDEVHHYSKIDPWFLIQIQDLVLEELALEKRTLDDLDYAELRRLKRKGFSDKRIAQLTKSAESAVRNKRVSLNLHPVYKRVDTCAGEFTSDTAYLYSTYEEECESRPSDKKKIMILGGGPNRIGQGIEFDYCCVHASLALREAGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIIHVEKPHGVIVHYGGQTPLKLANDLHANGVNIIGTSADSIDAAEDRERFQQILHKLHLKQPTNRTARNAEEAVKLAEEVGYPLVVRPSYVLGGRAMQIVYNVDELQRYMREAVSVSNDSPILLDHFLNNAIEVDVDCICDGAEVVIGGIMQHIEQAGIHSGDSACSLPPYSLSQEVQDEIRRQTAEMAFALGVKGLMNVQFAVQDGVIYVLEVNPRASRTVPFVSKATGRPLAKIAARVMAGESLKAQGIQGEVIPPFYSVKEAVFPFIKFPGVDTVLGPEMRSTGEVMGVGTTFAEAFLKAQLGANERIPKTGKVFLSVNDADKPRLLPIARQLQESGYGLCATLGTAKFLREHGVAVQIINKVREGRPNIVDAIKNGEIAMVINTVSGLAETVTDGHAIRRSALQQKVFLQTTLAGAEALAGSVEYLADSEVYSLQDLHQRLL
>NZ_CP003328.1|WP_015702555.1|1831534_1832158_+|DJ-1/PfpI-family-protein
MNIYCLLFDDYETLDLMGPIEFLFRLPNVQLHYISKQGGLIKSYQGFKTDTVSITCLPEKSILLIPGGQGTRQLVKDMPFLTWLTQLVDEAEFCLSVCTGSALLAAMKQLDGKWATSNKLAFEWVRQINPDVKWKAVARWVRDGKFYSSSGVTAGMDMTLGFIHDHYGQGLAQQIANQTEYIWNADPNKDEFASLYGYSAKSNMTKA
>NZ_CP003328.1|WP_015702554.1|1830636_1831506_+|PhzF-family-phenazine-biosynthesis-protein
MLTPYAYHLVNVFAETYFGGNPLAVFPQADGLTDQQMQLIARQFNLSETVFVHQTTESSAVRKLRIFTPDYELPFAGHPTIGAAFVLHQQLNLPETYLLQTQAGLVKLFHEAKQICFGLQNHIEVEVIDDNLPQYTQLLGLSESDIAQIAWVNTGSRQLLIQLTSLNALKTCQIHPALFQQIVKQSALYLWFVEQNQANVRLFFGSNGAVVEDPGTGSAAANLGGLCLKNGLTPLNWRIYQGDEIQRPNRLTLQVDESETIYVGGKVIAVGCGELFVPSREGEPSQGSR
>NZ_CP003328.1|WP_005752067.1|1829394_1830552_+|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MSEPAILVLADGSVFHGSSIGAKGHTVGEVVFNTAMTGYQEILTDPSYFRQIVTLTYPHIGNTGTNLEDCEANHVYASGLIIRDLPLLHSNFRSSMSLRDYLQTHNVVAIADIDTRRLTRILRDKGAQAGCIMTGEIDEAKALELAKSFGSMAGKDLAQEVSTGEIFTWTSGQWQLGKGFIEQTQAEFNVVAYDFGVKHNILRMLAERGCKITVVPAKTSAEQVLALNPDGIFLSNGPGDPEPCDYAISAIQTLLASKKPIFGICLGHQLLGLAAGGKTKKMAFGHHGANHPVQDLNTQKVFITSQNHGFEVDEASLPSHVRVTHRSLFDNSVQGIELSDQSAFSFQGHPEASPGPNDVAYLFDKFINEMRKANLSQLSTYVAHH
>NZ_CP003328.1|WP_012478341.1|1843901_1844564_+|heteromeric-transposase-endonuclease-subunit-TnsA
MRKTHSFQQVRKIKPTWMSVSGHIPFRNGVSIPYESTLERDFLMYFTYLPSVDEIVSQPTTLPFVKNGITYTYTPDFFLSFTDGRKPMLIEVKPKAKWQKHWKEWKEKWKAAIRFCQENGYVFHVYDEDRIRHLALFNLNYVQRYKRIQHEQEDIDVILAQVKLMGNTTIDYLLSRFFAGSLYRMKGLQIIYHLLATKQLHCNWFLPLNEFTEVWGNNDE
>NZ_CP003328.1|WP_012478340.1|1844553_1846482_+|DDE-type-integrase/transposase/recombinase
MMSNSGFTEKRYHHRLDRGRIILQKGNIYLNREDGEQYELVDYMDEPSQLLVRNLNTRTTKVVSIHQLENFKMNERTDLSVDLTAISNEYWEKAQQKYEAIKPLLGMDQHRPYAVKARAEDVGVNPRTLYRWLQAYNSIGSIAGLVDQKRGWQQGNSRLTPEQDKLIVQVINEFYLHKQRPTTEQTIREIRRRCKIEKVESPSKETIRIRILHISEEERLRKRGQREKARNKFKPKPNSFPDADYPLSVVQIDHTPVDLIIVDSKYRKPIGRPFLTVAIDIYSRMIVGYYLSLDAPSVTSVAMCIARGILPKERLLLDLGLQGSEWNAFGYPVKVHVDNGPDFQALDLSKSCFAHGIHLEFRPMGRPEYGGHIERVIGTFMKEVHSLAGTTFSNIKERDSYDSEKEAIMTLDEFEKWLVHYIVNVYHKRVHSALGISPEQKWKIGIFGDENEVGCGYPQLPVDEQTLLLDFLPSITRTIQHNGVTIDGLRYYDVALNMYISDSDESGKSKEFLFRRDPRNISKIWFYDPKLKRYFPIPFANQAMPEMSIWEYREVRSRIANKGDKYINEQQVLDGLTEMREMVAESAQRTKKARRQAERQKMHKASKPIIETKVETNAVVPVVVTSNLLALDDESLSFGEVD
>NZ_CP003328.1|WP_012478339.1|1846481_1847369_+|TniB-family-NTP-binding-protein
MQYEHVHEKFRHLVTADNQERIAFLDEPRWLGYGVAKDIMDNLVSLMNKPKRPRMLNLLIVGDSNNGKTTLIRRFFDLYGQAYIDSDSNAIYPILLAEAPPSANEKELYISLLERFYVPYKPTDTIAKLRYQTIHLFREFRVKMLIIDEFHSLLVGTPRLQRQVMNAIKMLCNELQIPIVGVGTRDAIRVLHTDPQHASRFDVAELPTWKLDKDFQKLLFQFQGILPLKKCSNLQSPELATKIHTISGGNLGNVHRLLTACAVEAITSGTEQITLDIIEKNSWVQPTQGFRKIIG
>NZ_CP003328.1|WP_012478338.1|1847326_1848445_+|TniQ-family-protein
MGTTNAGLPKNYRIKSGVIKTPLYSNESISSWLIRSALDCGTEPITFTGFYWNEWRLWTYDLDRGFEPISQHIYADINELSLNQQVNLVNHSLYSVLRPINGKNTLIKGQAKWVLSRGSRNRSFRVGQSYCPCCLEETPYLRNEWRFAWHFGCLKHKVLFESKCSCCGGLYQPHLLSAEKRQLNYCHQCGEKLQVITTPLNEVEIATMETLDNVFTTNSGECFGKCVDSQVYFAILRYFINFTRRAAIAKSTHSFSRFVEQCGISQVEICQTKTALAFEQLPVEERKNLLVNAGKILKLSSKDFIQAIKQSGITQKAFAFERYPTELDNLFKYAIEGKTTSRKTIINKPKTDSVLSLNRQWERLKRQLQIAV
>NZ_CP003328.1|WP_012478337.1|1848405_1849863_+|hypothetical-protein
MGTTKTTITNCSMKITKIRSQNSCSICGKTPVTRKFREEYYCANCYAQWFKKKTCKSCGQLTRIHREGELCLECEKLTDCVRCGKTSGTFEIGMISRYGAVCSSCTRYFREEIECSECGKMTRDRYRSPVTNESVCLQCYRRYTFATCKNCRRYRKVHNQEKQLCKKCDEKLLSTCPKCKGEMPSGYGNVCPDCARRSLLFNMIRLNGHILRNKAVKTAYKKFIFWYMRKCGISVALHKGADFMRFFIDCDEIWQQIPDYAELVTHFKPNGLRANLTVLRWLLDTNQIIVDEALKDDLAELERIQALFNKLKESVPCIASYYQKLQRRCDEGKTSLKSVRLALQPAIDLISTNEVTDYPTQDQLNQYLVKKSGQTAAITGFINHLKSEYHRELEIDRKLIQQIKTKQLKKHCSQRLIELYKKSELTDNEQMELIYVVLYSLHSVEIKKPKQDKILLLDGVAYYRSEDRDYFLPQDIYQRINPQFS
>NZ_CP003328.1|WP_012478336.1|1849980_1850205_+|hypothetical-protein
MNSTNNKSTLSLKQQFKLWLEQEQKDGDMIILVGIPDILKRFDRRLAIIKGNQLEKRYLREWREAFRIDRKLFN
>NZ_CP003328.1|WP_017357766.1|1850266_1851838_-|N-6-DNA-methylase
MKDIYCSFYTNSDLITNYMVHKIKLCNNDKVLEPSAGEGVFIDEILKSNIHLHIDALDINPEAVRVLNKKYSSYSSIKVRETDTLLDNELDLYDTSELWIKETDTLIDNEIDYFAKTGGYYDKVIGNPPYGAWQDHEKRSTLKKKYLGHYVKETYTLFLLRCLSVLKPKGLLSFIIPDTFMFLNMHSNLRKTLLTNAKIKEVLIFPSKFFPGVNFGYSNLSIITLEKCCKGDYQENEITIIKGLKNINELELLSKGLVDQIPNLNKLKIKQNEILNNPDCRFILTESEDKDMLINSKVKLGDIASVVTGFYTGNNVEFIKVLDKNVKGSKGYKIIKENEIFNSNSLEGIENVNYGYIPYIKRASAGKYFRGKDEWFVRWDKDAIAYYQTNKKSRFQNTTYYFKTGIGIPMVKSKSIKAFLMEDRVFDQSIVGLFPYEESKTLYILALMNSSVMNKYIHLINPTANNSANYIKQLPYIEPTESQMNIINKMVSELITLQKLDKLDKAEKIHDEVDKIISEIYSS
>NZ_CP003328.1|WP_026042305.1|1851891_1852548_-|hypothetical-protein
MLEYRNKVWAYEYMTFSRRIGELWEPFCKLAFKYSTKDLLLVEPLDFNQIKEDIKGNAINFIYKLPISFEDKNELIRLYETPWNLMGSGGIKLDLDLHFSQGNCYHNCDFKSGFSSNEKGNTNRLLLVGSIYNSLNQYMRNIIFVRQPEDQNNHYLQKLKHSGYWEVYCADDAYSVMAEFTGFNLKSWLENNADWANDMEQDFRRHLERNNLISYLTW
>NZ_CP003328.1|WP_001339197.1|1852682_1853891_+|IS4-like-element-ISVsa5-family-transposase
MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTELGRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIREQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVSDAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISNLHDMSSSHSKTLGYKRLTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWVLATNLPVEIRTPKQLVNIYSKRMQIEETFRDLKSPAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWLAGVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYTITREDLLVAATLLAQNLFTHGYALGKL
>NZ_CP003328.1|WP_035689358.1|1853900_1854272_-|helix-turn-helix-domain-containing-protein
MQLRYDDKQFHTTVIKDVLLWIEHNLDQSLLLDDVANKAGYTKWYFQRLFKKVTGVTLASYIRARRLTKAAVELRLTKKTILEIALKYQFDSQQSFTRRFKYIFKVTPSYYRRNKLWELEAMH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP003328_2	2.17\|1550108\|32\|NZ_CP003328\|CRISPRCasFinder,CRT,PILER-CR	1550108-1550139	32	NZ_CP003328.1	1750933-1750964	0	1.0
NZ_CP003328_2	2.21\|1550348\|32\|NZ_CP003328\|CRISPRCasFinder,CRT,PILER-CR	1550348-1550379	32	NZ_CP003328.1	1750048-1750079	0	1.0

1. spacer 2.17|1550108|32|NZ_CP003328|CRISPRCasFinder,CRT,PILER-CR matches to position: 1750933-1750964, mismatch: 0, identity: 1.0

tacgccattatggcgactgacttccgcgataa	CRISPR spacer
tacgccattatggcgactgacttccgcgataa	Protospacer
********************************

2. spacer 2.21|1550348|32|NZ_CP003328|CRISPRCasFinder,CRT,PILER-CR matches to position: 1750048-1750079, mismatch: 0, identity: 1.0

tgtgattctggcttgtgcaaccggtatgagtg	CRISPR spacer
tgtgattctggcttgtgcaaccggtatgagtg	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP003328_2	2.18\|1550168\|32\|NZ_CP003328\|CRISPRCasFinder,CRT,PILER-CR	1550168-1550199	32	MH238466	Pasteurella phage AFS-2018a, complete genome	26881-26912	0	1.0
NZ_CP003328_2	2.20\|1550288\|32\|NZ_CP003328\|CRISPRCasFinder,CRT,PILER-CR	1550288-1550319	32	MH238467	Pasteurella phage Pm86, complete genome	42524-42555	0	1.0
NZ_CP003328_2	2.1\|1549148\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549148-1549179	32	MH238467	Pasteurella phage Pm86, complete genome	42601-42632	1	0.969
NZ_CP003328_2	2.4\|1549328\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549328-1549359	32	MH238466	Pasteurella phage AFS-2018a, complete genome	23770-23801	1	0.969
NZ_CP003328_1	1.1\|288231\|32\|NZ_CP003328\|PILER-CR,CRISPRCasFinder,CRT	288231-288262	32	NC_003315	Haemophilus phage HP2, complete genome	26899-26930	2	0.938
NZ_CP003328_1	1.1\|288231\|32\|NZ_CP003328\|PILER-CR,CRISPRCasFinder,CRT	288231-288262	32	AY027935	Haemophilus influenzae phage HP2, complete genome	26899-26930	2	0.938
NZ_CP003328_2	2.3\|1549268\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549268-1549299	32	NC_008193	Pasteurella phage F108, complete genome	11445-11476	2	0.938
NZ_CP003328_2	2.3\|1549268\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549268-1549299	32	DQ114220	Bacteriophage F108, complete genome	11445-11476	2	0.938
NZ_CP003328_2	2.19\|1550228\|32\|NZ_CP003328\|CRISPRCasFinder,CRT,PILER-CR	1550228-1550259	32	MH238467	Pasteurella phage Pm86, complete genome	48883-48914	2	0.938
NZ_CP003328_1	1.1\|288231\|32\|NZ_CP003328\|PILER-CR,CRISPRCasFinder,CRT	288231-288262	32	U24159	Bacteriophage HP1 strain HP1c1, complete genome	27719-27750	3	0.906
NZ_CP003328_1	1.1\|288231\|32\|NZ_CP003328\|PILER-CR,CRISPRCasFinder,CRT	288231-288262	32	NC_001697	Haemophilus phage HP1, complete genome	27719-27750	3	0.906
NZ_CP003328_1	1.3\|288351\|32\|NZ_CP003328\|PILER-CR,CRISPRCasFinder,CRT	288351-288382	32	NZ_CP017756	Cupriavidus malaysiensis strain USMAA1020 isolate pure plasmid unnamed1, complete sequence	73488-73519	5	0.844
NZ_CP003328_2	2.7\|1549508\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549508-1549539	32	HQ110084	Erwinia phage ENT90, complete genome	19091-19122	5	0.844
NZ_CP003328_2	2.2\|1549208\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549208-1549239	32	NZ_KX086582	Staphylococcus aureus strain WBG1024 plasmid pWBG637, complete sequence	25794-25825	6	0.812
NZ_CP003328_2	2.2\|1549208\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549208-1549239	32	NZ_KF831355	Staphylococcus aureus strain A960649 plasmid pBU108a, complete sequence	23170-23201	6	0.812
NZ_CP003328_2	2.2\|1549208\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549208-1549239	32	NZ_AP018563	Staphylococcus argenteus strain 58113 plasmid p1, complete sequence	18411-18442	6	0.812
NZ_CP003328_2	2.2\|1549208\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549208-1549239	32	NC_013327	Staphylococcus aureus plasmid pWBG749, complete sequence	26168-26199	6	0.812
NZ_CP003328_2	2.2\|1549208\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549208-1549239	32	CP030569	Staphylococcus aureus strain ER01892.3 plasmid unnamed1, complete sequence	12940-12971	6	0.812
NZ_CP003328_2	2.2\|1549208\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549208-1549239	32	CP030458	Staphylococcus aureus strain ER04013.3 plasmid unnamed1, complete sequence	15652-15683	6	0.812
NZ_CP003328_2	2.2\|1549208\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549208-1549239	32	NZ_AP017923	Staphylococcus aureus strain JP02758 plasmid pJP080, complete sequence	17835-17866	6	0.812
NZ_CP003328_2	2.2\|1549208\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549208-1549239	32	NC_013325	Staphylococcus aureus plasmid pWBG745, complete sequence	13088-13119	6	0.812
NZ_CP003328_2	2.2\|1549208\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549208-1549239	32	CP030696	Staphylococcus aureus strain ER01532.3 plasmid unnamed1, complete sequence	28191-28222	6	0.812
NZ_CP003328_2	2.2\|1549208\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549208-1549239	32	CP030710	Staphylococcus aureus strain ER01174.3 plasmid unnamed1, complete sequence	7547-7578	6	0.812
NZ_CP003328_2	2.2\|1549208\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549208-1549239	32	NZ_CP012757	Staphylococcus aureus subsp. aureus strain JS395 plasmid, complete sequence	37721-37752	6	0.812
NZ_CP003328_2	2.2\|1549208\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549208-1549239	32	NZ_CP042004	Staphylococcus aureus strain B3-14B plasmid pSALNT46, complete sequence	11471-11502	6	0.812
NZ_CP003328_2	2.2\|1549208\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549208-1549239	32	NZ_CP047857	Staphylococcus aureus strain UP_1435 plasmid unnamed1, complete sequence	26882-26913	6	0.812
NZ_CP003328_2	2.2\|1549208\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549208-1549239	32	NZ_CP012594	Staphylococcus aureus strain HOU1444-VR plasmid pVR-MSSA_01, complete sequence	9160-9191	6	0.812
NZ_CP003328_2	2.2\|1549208\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549208-1549239	32	NZ_MH587575	Staphylococcus aureus strain WBG4880 plasmid pWBG637, complete sequence	17922-17953	6	0.812
NZ_CP003328_2	2.2\|1549208\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549208-1549239	32	NZ_MH587574	Staphylococcus aureus strain WBG10514 plasmid pWBG731, complete sequence	17842-17873	6	0.812
NZ_CP003328_2	2.2\|1549208\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549208-1549239	32	CP030603	Staphylococcus aureus strain ER00484.3 plasmid unnamed1, complete sequence	34556-34587	6	0.812
NZ_CP003328_2	2.14\|1549928\|32\|NZ_CP003328\|CRISPRCasFinder,CRT,PILER-CR	1549928-1549959	32	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	521041-521072	6	0.812
NZ_CP003328_1	1.1\|288231\|32\|NZ_CP003328\|PILER-CR,CRISPRCasFinder,CRT	288231-288262	32	MN693155	Marine virus AFVG_25M94, complete genome	42117-42148	7	0.781
NZ_CP003328_1	1.4\|288411\|32\|NZ_CP003328\|PILER-CR,CRISPRCasFinder,CRT	288411-288442	32	NZ_CP046163	Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence	465830-465861	7	0.781
NZ_CP003328_1	1.4\|288411\|32\|NZ_CP003328\|PILER-CR,CRISPRCasFinder,CRT	288411-288442	32	NZ_CP046066	Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence	650120-650151	7	0.781
NZ_CP003328_1	1.4\|288411\|32\|NZ_CP003328\|PILER-CR,CRISPRCasFinder,CRT	288411-288442	32	NZ_CP045356	Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence	1110688-1110719	7	0.781
NZ_CP003328_1	1.2\|288291\|32\|NZ_CP003328\|PILER-CR,CRISPRCasFinder,CRT	288291-288322	32	MN694758	Marine virus AFVG_250M853, complete genome	27038-27069	8	0.75
NZ_CP003328_1	1.2\|288291\|32\|NZ_CP003328\|PILER-CR,CRISPRCasFinder,CRT	288291-288322	32	MN694774	Marine virus AFVG_250M941, complete genome	26488-26519	8	0.75
NZ_CP003328_1	1.2\|288291\|32\|NZ_CP003328\|PILER-CR,CRISPRCasFinder,CRT	288291-288322	32	MN694077	Marine virus AFVG_250M852, complete genome	27041-27072	8	0.75
NZ_CP003328_1	1.2\|288291\|32\|NZ_CP003328\|PILER-CR,CRISPRCasFinder,CRT	288291-288322	32	MN693487	Marine virus AFVG_25M100, complete genome	6473-6504	8	0.75
NZ_CP003328_1	1.2\|288291\|32\|NZ_CP003328\|PILER-CR,CRISPRCasFinder,CRT	288291-288322	32	MN694586	Marine virus AFVG_250M370, complete genome	8206-8237	8	0.75
NZ_CP003328_2	2.2\|1549208\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549208-1549239	32	MK905543	Vibrio phage USC-1, complete genome	55483-55514	8	0.75
NZ_CP003328_2	2.2\|1549208\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549208-1549239	32	MK358448	Vibrio phage 5, complete genome	209261-209292	8	0.75
NZ_CP003328_2	2.19\|1550228\|32\|NZ_CP003328\|CRISPRCasFinder,CRT,PILER-CR	1550228-1550259	32	AY328852	Vibrio parahaemolyticus phage VP16T, partial sequence	41690-41721	8	0.75
NZ_CP003328_1	1.8\|288651\|32\|NZ_CP003328\|PILER-CR,CRISPRCasFinder,CRT	288651-288682	32	LN846932	Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome	1949-1980	9	0.719
NZ_CP003328_2	2.7\|1549508\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549508-1549539	32	NZ_CP037949	Erwinia sp. QL-Z3 plasmid unnamed1, complete sequence	20626-20657	9	0.719
NZ_CP003328_2	2.7\|1549508\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549508-1549539	32	NC_014305	Erwinia billingiae Eb661 plasmid pEB170, complete sequence	99511-99542	9	0.719
NZ_CP003328_2	2.8\|1549568\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549568-1549599	32	NZ_CP039495	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000669 plasmid pCFSAN000669_2, complete sequence	22879-22910	9	0.719
NZ_CP003328_2	2.8\|1549568\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549568-1549599	32	NC_011802	Salmonella enterica bacteriophage SE1, complete genome	13842-13873	9	0.719
NZ_CP003328_2	2.8\|1549568\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549568-1549599	32	CP051278	Salmonella phage ST-87, complete genome	24650-24681	9	0.719
NZ_CP003328_2	2.8\|1549568\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549568-1549599	32	CP051288	Salmonella phage ST-29, complete genome	37493-37524	9	0.719
NZ_CP003328_2	2.8\|1549568\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549568-1549599	32	CP051285	Salmonella phage ST-32, complete genome	30587-30618	9	0.719
NZ_CP003328_2	2.8\|1549568\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549568-1549599	32	MH370387	Salmonella phage S149, complete genome	14295-14326	9	0.719
NZ_CP003328_2	2.8\|1549568\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549568-1549599	32	MG407615	Salmonella phage Bp96115, partial genome	4214-4245	9	0.719
NZ_CP003328_2	2.8\|1549568\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549568-1549599	32	NC_042346	Salmonella virus BTP1 genome assembly, chromosome: BTP1	29932-29963	9	0.719
NZ_CP003328_2	2.8\|1549568\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549568-1549599	32	NC_014900	Salmonella phage ST160, complete genome	13910-13941	9	0.719
NZ_CP003328_2	2.8\|1549568\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549568-1549599	32	NC_005841	Enterobacteria phage ST104 DNA, complete genome	14296-14327	9	0.719
NZ_CP003328_2	2.16\|1550048\|32\|NZ_CP003328\|CRISPRCasFinder,CRT,PILER-CR	1550048-1550079	32	JX094500	Cronobacter phage CR5, complete genome	210741-210772	9	0.719
NZ_CP003328_2	2.20\|1550288\|32\|NZ_CP003328\|CRISPRCasFinder,CRT,PILER-CR	1550288-1550319	32	NZ_CP012702	Sphingopyxis macrogoltabida strain EY-1 isolate activated sludge plasmid 2, complete sequence	56918-56949	9	0.719
NZ_CP003328_2	2.20\|1550288\|32\|NZ_CP003328\|CRISPRCasFinder,CRT,PILER-CR	1550288-1550319	32	NZ_CP033227	Sphingobium yanoikuyae strain SJTF8 plasmid pF1, complete sequence	447275-447306	9	0.719
NZ_CP003328_1	1.2\|288291\|32\|NZ_CP003328\|PILER-CR,CRISPRCasFinder,CRT	288291-288322	32	NZ_CP026928	Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence	5680-5711	10	0.688
NZ_CP003328_1	1.2\|288291\|32\|NZ_CP003328\|PILER-CR,CRISPRCasFinder,CRT	288291-288322	32	GU943040	Uncultured phage MedDCM-OCT-S09-C28 genomic sequence	16896-16927	10	0.688
NZ_CP003328_1	1.3\|288351\|32\|NZ_CP003328\|PILER-CR,CRISPRCasFinder,CRT	288351-288382	32	NZ_CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	284092-284123	10	0.688
NZ_CP003328_1	1.9\|288711\|32\|NZ_CP003328\|PILER-CR,CRISPRCasFinder,CRT	288711-288742	32	CP011076	Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence	505837-505868	10	0.688
NZ_CP003328_2	2.9\|1549628\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549628-1549659	32	MH271312	Microbacterium phage RobsFeet, complete genome	44909-44940	10	0.688
NZ_CP003328_2	2.9\|1549628\|32\|NZ_CP003328\|CRISPRCasFinder,CRT	1549628-1549659	32	MK524510	Microbacterium phage Fireman, complete genome	45329-45360	10	0.688
NZ_CP003328_2	2.20\|1550288\|32\|NZ_CP003328\|CRISPRCasFinder,CRT,PILER-CR	1550288-1550319	32	NZ_CP023452	Rhizorhabdus dicambivorans strain Ndbn-20 plasmid p3, complete sequence	33336-33367	10	0.688
NZ_CP003328_2	2.20\|1550288\|32\|NZ_CP003328\|CRISPRCasFinder,CRT,PILER-CR	1550288-1550319	32	NZ_CP009296	Novosphingobium pentaromativorans US6-1 plasmid pLA2, complete sequence	25608-25639	10	0.688
NZ_CP003328_2	2.20\|1550288\|32\|NZ_CP003328\|CRISPRCasFinder,CRT,PILER-CR	1550288-1550319	32	NZ_CP022749	Sphingobium hydrophobicum strain C1 plasmid p3, complete sequence	36365-36396	10	0.688
NZ_CP003328_2	2.20\|1550288\|32\|NZ_CP003328\|CRISPRCasFinder,CRT,PILER-CR	1550288-1550319	32	NZ_CP033229	Sphingobium yanoikuyae strain SJTF8 plasmid pF3, complete sequence	14157-14188	10	0.688
NZ_CP003328_2	2.20\|1550288\|32\|NZ_CP003328\|CRISPRCasFinder,CRT,PILER-CR	1550288-1550319	32	NZ_CP015989	Sphingobium sp. EP60837 plasmid pEP2, complete sequence	154369-154400	10	0.688

1. spacer 2.18|1550168|32|NZ_CP003328|CRISPRCasFinder,CRT,PILER-CR matches to MH238466 (Pasteurella phage AFS-2018a, complete genome) position: , mismatch: 0, identity: 1.0

acttgtgcaagggttgtgtgttcataggcttt	CRISPR spacer
acttgtgcaagggttgtgtgttcataggcttt	Protospacer
********************************

2. spacer 2.20|1550288|32|NZ_CP003328|CRISPRCasFinder,CRT,PILER-CR matches to MH238467 (Pasteurella phage Pm86, complete genome) position: , mismatch: 0, identity: 1.0

actagcggaggctcaacaatgacggaaggtaa	CRISPR spacer
actagcggaggctcaacaatgacggaaggtaa	Protospacer
********************************

3. spacer 2.1|1549148|32|NZ_CP003328|CRISPRCasFinder,CRT matches to MH238467 (Pasteurella phage Pm86, complete genome) position: , mismatch: 1, identity: 0.969

accaatctgataatcgagccaagatcgcttta	CRISPR spacer
accaatctgataatcgagccaaaatcgcttta	Protospacer
**********************.*********

4. spacer 2.4|1549328|32|NZ_CP003328|CRISPRCasFinder,CRT matches to MH238466 (Pasteurella phage AFS-2018a, complete genome) position: , mismatch: 1, identity: 0.969

gtatgagttcggcatttgcagagcttaaagct	CRISPR spacer
gcatgagttcggcatttgcagagcttaaagct	Protospacer
*.******************************

5. spacer 1.1|288231|32|NZ_CP003328|PILER-CR,CRISPRCasFinder,CRT matches to NC_003315 (Haemophilus phage HP2, complete genome) position: , mismatch: 2, identity: 0.938

attagctgaagaccgatttattagaaatacag	CRISPR spacer
attagctgaagaccgatttattagaaatgcat	Protospacer
****************************.**

6. spacer 1.1|288231|32|NZ_CP003328|PILER-CR,CRISPRCasFinder,CRT matches to AY027935 (Haemophilus influenzae phage HP2, complete genome) position: , mismatch: 2, identity: 0.938

attagctgaagaccgatttattagaaatacag	CRISPR spacer
attagctgaagaccgatttattagaaatgcat	Protospacer
****************************.**

7. spacer 2.3|1549268|32|NZ_CP003328|CRISPRCasFinder,CRT matches to NC_008193 (Pasteurella phage F108, complete genome) position: , mismatch: 2, identity: 0.938

agtgtaattccgctccgttgcttaaaataatc	CRISPR spacer
agtgtaattccgcgccattgcttaaaataatc	Protospacer
************* **.***************

8. spacer 2.3|1549268|32|NZ_CP003328|CRISPRCasFinder,CRT matches to DQ114220 (Bacteriophage F108, complete genome) position: , mismatch: 2, identity: 0.938

agtgtaattccgctccgttgcttaaaataatc	CRISPR spacer
agtgtaattccgcgccattgcttaaaataatc	Protospacer
************* **.***************

9. spacer 2.19|1550228|32|NZ_CP003328|CRISPRCasFinder,CRT,PILER-CR matches to MH238467 (Pasteurella phage Pm86, complete genome) position: , mismatch: 2, identity: 0.938

taaaattaaaactatcgtcgcttgcttgtagc	CRISPR spacer
taaaattaaaactgtcgtcgctagcttgtagc	Protospacer
*************.******** *********

10. spacer 1.1|288231|32|NZ_CP003328|PILER-CR,CRISPRCasFinder,CRT matches to U24159 (Bacteriophage HP1 strain HP1c1, complete genome) position: , mismatch: 3, identity: 0.906

attagctgaagaccgatttattagaaatacag	CRISPR spacer
acttgcggaagaccgatttattagaaatacag	Protospacer
*.* ** *************************

11. spacer 1.1|288231|32|NZ_CP003328|PILER-CR,CRISPRCasFinder,CRT matches to NC_001697 (Haemophilus phage HP1, complete genome) position: , mismatch: 3, identity: 0.906

attagctgaagaccgatttattagaaatacag	CRISPR spacer
acttgcggaagaccgatttattagaaatacag	Protospacer
*.* ** *************************

12. spacer 1.3|288351|32|NZ_CP003328|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017756 (Cupriavidus malaysiensis strain USMAA1020 isolate pure plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.844

attcgatttccagtgccgaaaat-ccatgccct	CRISPR spacer
attcgatttctggtgccgaaaatggcttgccc-	Protospacer
**********..***********  * *****

13. spacer 2.7|1549508|32|NZ_CP003328|CRISPRCasFinder,CRT matches to HQ110084 (Erwinia phage ENT90, complete genome) position: , mismatch: 5, identity: 0.844

cgggtgcgcaaatggtttgcgacaaaaggcga	CRISPR spacer
cgcatccgcaaaaagtttgcgacaaaaggcga	Protospacer
** .* ****** .******************

14. spacer 2.2|1549208|32|NZ_CP003328|CRISPRCasFinder,CRT matches to NZ_KX086582 (Staphylococcus aureus strain WBG1024 plasmid pWBG637, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

15. spacer 2.2|1549208|32|NZ_CP003328|CRISPRCasFinder,CRT matches to NZ_KF831355 (Staphylococcus aureus strain A960649 plasmid pBU108a, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

16. spacer 2.2|1549208|32|NZ_CP003328|CRISPRCasFinder,CRT matches to NZ_AP018563 (Staphylococcus argenteus strain 58113 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

17. spacer 2.2|1549208|32|NZ_CP003328|CRISPRCasFinder,CRT matches to NC_013327 (Staphylococcus aureus plasmid pWBG749, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

18. spacer 2.2|1549208|32|NZ_CP003328|CRISPRCasFinder,CRT matches to CP030569 (Staphylococcus aureus strain ER01892.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

19. spacer 2.2|1549208|32|NZ_CP003328|CRISPRCasFinder,CRT matches to CP030458 (Staphylococcus aureus strain ER04013.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

20. spacer 2.2|1549208|32|NZ_CP003328|CRISPRCasFinder,CRT matches to NZ_AP017923 (Staphylococcus aureus strain JP02758 plasmid pJP080, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

21. spacer 2.2|1549208|32|NZ_CP003328|CRISPRCasFinder,CRT matches to NC_013325 (Staphylococcus aureus plasmid pWBG745, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

22. spacer 2.2|1549208|32|NZ_CP003328|CRISPRCasFinder,CRT matches to CP030696 (Staphylococcus aureus strain ER01532.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

23. spacer 2.2|1549208|32|NZ_CP003328|CRISPRCasFinder,CRT matches to CP030710 (Staphylococcus aureus strain ER01174.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

24. spacer 2.2|1549208|32|NZ_CP003328|CRISPRCasFinder,CRT matches to NZ_CP012757 (Staphylococcus aureus subsp. aureus strain JS395 plasmid, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

25. spacer 2.2|1549208|32|NZ_CP003328|CRISPRCasFinder,CRT matches to NZ_CP042004 (Staphylococcus aureus strain B3-14B plasmid pSALNT46, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

26. spacer 2.2|1549208|32|NZ_CP003328|CRISPRCasFinder,CRT matches to NZ_CP047857 (Staphylococcus aureus strain UP_1435 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

27. spacer 2.2|1549208|32|NZ_CP003328|CRISPRCasFinder,CRT matches to NZ_CP012594 (Staphylococcus aureus strain HOU1444-VR plasmid pVR-MSSA_01, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

28. spacer 2.2|1549208|32|NZ_CP003328|CRISPRCasFinder,CRT matches to NZ_MH587575 (Staphylococcus aureus strain WBG4880 plasmid pWBG637, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

29. spacer 2.2|1549208|32|NZ_CP003328|CRISPRCasFinder,CRT matches to NZ_MH587574 (Staphylococcus aureus strain WBG10514 plasmid pWBG731, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

30. spacer 2.2|1549208|32|NZ_CP003328|CRISPRCasFinder,CRT matches to CP030603 (Staphylococcus aureus strain ER00484.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

31. spacer 2.14|1549928|32|NZ_CP003328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 6, identity: 0.812

aaaggcaatatgcgacaaattccag---agatttt	CRISPR spacer
aaatgcaatatgcgacaaatcccaagtcagat---	Protospacer
*** ****************.***.   ****

32. spacer 1.1|288231|32|NZ_CP003328|PILER-CR,CRISPRCasFinder,CRT matches to MN693155 (Marine virus AFVG_25M94, complete genome) position: , mismatch: 7, identity: 0.781

attagctg-aagaccgatttattagaaatacag	CRISPR spacer
-tacgttgttagaccaatttataagaaatacag	Protospacer
 *  *.**  *****.****** **********

33. spacer 1.4|288411|32|NZ_CP003328|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046163 (Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgacgtgttcaactaacggctgacaatc	CRISPR spacer
tttctgacgtgttcaactatcggctgaacata	Protospacer
 *  *************** *******  **

34. spacer 1.4|288411|32|NZ_CP003328|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046066 (Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgacgtgttcaactaacggctgacaatc	CRISPR spacer
tttctgacgtgttcaactatcggctgaacata	Protospacer
 *  *************** *******  **

35. spacer 1.4|288411|32|NZ_CP003328|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045356 (Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgacgtgttcaactaacggctgacaatc	CRISPR spacer
tttctgacgtgttcaactatcggctgaacata	Protospacer
 *  *************** *******  **

36. spacer 1.2|288291|32|NZ_CP003328|PILER-CR,CRISPRCasFinder,CRT matches to MN694758 (Marine virus AFVG_250M853, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

37. spacer 1.2|288291|32|NZ_CP003328|PILER-CR,CRISPRCasFinder,CRT matches to MN694774 (Marine virus AFVG_250M941, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

38. spacer 1.2|288291|32|NZ_CP003328|PILER-CR,CRISPRCasFinder,CRT matches to MN694077 (Marine virus AFVG_250M852, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

39. spacer 1.2|288291|32|NZ_CP003328|PILER-CR,CRISPRCasFinder,CRT matches to MN693487 (Marine virus AFVG_25M100, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

40. spacer 1.2|288291|32|NZ_CP003328|PILER-CR,CRISPRCasFinder,CRT matches to MN694586 (Marine virus AFVG_250M370, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

41. spacer 2.2|1549208|32|NZ_CP003328|CRISPRCasFinder,CRT matches to MK905543 (Vibrio phage USC-1, complete genome) position: , mismatch: 8, identity: 0.75

aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
agtctgaggaaacagaagaattggaagacgat	Protospacer
*.    **.*******************.**.

42. spacer 2.2|1549208|32|NZ_CP003328|CRISPRCasFinder,CRT matches to MK358448 (Vibrio phage 5, complete genome) position: , mismatch: 8, identity: 0.75

aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
agtctgaggaaacagaagaattggaagacgat	Protospacer
*.    **.*******************.**.

43. spacer 2.19|1550228|32|NZ_CP003328|CRISPRCasFinder,CRT,PILER-CR matches to AY328852 (Vibrio parahaemolyticus phage VP16T, partial sequence) position: , mismatch: 8, identity: 0.75

taaaattaaaactatcgtcgcttgcttgtagc	CRISPR spacer
gttaagcacaaccatcgccgcttgcttgtagc	Protospacer
   ** .* ***.****.**************

44. spacer 1.8|288651|32|NZ_CP003328|PILER-CR,CRISPRCasFinder,CRT matches to LN846932 (Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome) position: , mismatch: 9, identity: 0.719

aagcccaccttgcgcttgaacagatgaattaa	CRISPR spacer
ttgctttccttgcgctttaacagatgtatttt	Protospacer
  **.. ********** ******** ***

45. spacer 2.7|1549508|32|NZ_CP003328|CRISPRCasFinder,CRT matches to NZ_CP037949 (Erwinia sp. QL-Z3 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cgggtgcgcaaatggtttgcgacaaaaggcga	CRISPR spacer
atcattcgctgatggtttgcgacaaaaggccg	Protospacer
   .* *** .******************* .

46. spacer 2.7|1549508|32|NZ_CP003328|CRISPRCasFinder,CRT matches to NC_014305 (Erwinia billingiae Eb661 plasmid pEB170, complete sequence) position: , mismatch: 9, identity: 0.719

cgggtgcgcaaatggtttgcgacaaaaggcga	CRISPR spacer
atcattcgctgatggtttgcgacaaaaggccg	Protospacer
   .* *** .******************* .

47. spacer 2.8|1549568|32|NZ_CP003328|CRISPRCasFinder,CRT matches to NZ_CP039495 (Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000669 plasmid pCFSAN000669_2, complete sequence) position: , mismatch: 9, identity: 0.719

aactataataaaaaaggctgttgccattgcta	CRISPR spacer
caaagcaatacaaaaagctgttgccattgcag	Protospacer
 *  ..**** ****.************** .

48. spacer 2.8|1549568|32|NZ_CP003328|CRISPRCasFinder,CRT matches to NC_011802 (Salmonella enterica bacteriophage SE1, complete genome) position: , mismatch: 9, identity: 0.719

aactataataaaaaaggctgttgccattgcta	CRISPR spacer
caaagcaatacaaaaagctgttgccattgcag	Protospacer
 *  ..**** ****.************** .

49. spacer 2.8|1549568|32|NZ_CP003328|CRISPRCasFinder,CRT matches to CP051278 (Salmonella phage ST-87, complete genome) position: , mismatch: 9, identity: 0.719

aactataataaaaaaggctgttgccattgcta	CRISPR spacer
caaagcaatacaaaaagctgttgccattgcag	Protospacer
 *  ..**** ****.************** .

50. spacer 2.8|1549568|32|NZ_CP003328|CRISPRCasFinder,CRT matches to CP051288 (Salmonella phage ST-29, complete genome) position: , mismatch: 9, identity: 0.719

aactataataaaaaaggctgttgccattgcta	CRISPR spacer
caaagcaatacaaaaagctgttgccattgcag	Protospacer
 *  ..**** ****.************** .

51. spacer 2.8|1549568|32|NZ_CP003328|CRISPRCasFinder,CRT matches to CP051285 (Salmonella phage ST-32, complete genome) position: , mismatch: 9, identity: 0.719

aactataataaaaaaggctgttgccattgcta	CRISPR spacer
caaagcaatacaaaaagctgttgccattgcag	Protospacer
 *  ..**** ****.************** .

52. spacer 2.8|1549568|32|NZ_CP003328|CRISPRCasFinder,CRT matches to MH370387 (Salmonella phage S149, complete genome) position: , mismatch: 9, identity: 0.719

aactataataaaaaaggctgttgccattgcta	CRISPR spacer
caaagcaatacaaaaagctgttgccattgcag	Protospacer
 *  ..**** ****.************** .

53. spacer 2.8|1549568|32|NZ_CP003328|CRISPRCasFinder,CRT matches to MG407615 (Salmonella phage Bp96115, partial genome) position: , mismatch: 9, identity: 0.719

aactataataaaaaaggctgttgccattgcta	CRISPR spacer
caaagcaatacaaaaagctgttgccattgcag	Protospacer
 *  ..**** ****.************** .

54. spacer 2.8|1549568|32|NZ_CP003328|CRISPRCasFinder,CRT matches to NC_042346 (Salmonella virus BTP1 genome assembly, chromosome: BTP1) position: , mismatch: 9, identity: 0.719

aactataataaaaaaggctgttgccattgcta	CRISPR spacer
caaagcaatacaaaaagctgttgccattgcag	Protospacer
 *  ..**** ****.************** .

55. spacer 2.8|1549568|32|NZ_CP003328|CRISPRCasFinder,CRT matches to NC_014900 (Salmonella phage ST160, complete genome) position: , mismatch: 9, identity: 0.719

aactataataaaaaaggctgttgccattgcta	CRISPR spacer
caaagcaatacaaaaagctgttgccattgcag	Protospacer
 *  ..**** ****.************** .

56. spacer 2.8|1549568|32|NZ_CP003328|CRISPRCasFinder,CRT matches to NC_005841 (Enterobacteria phage ST104 DNA, complete genome) position: , mismatch: 9, identity: 0.719

aactataataaaaaaggctgttgccattgcta	CRISPR spacer
caaagcaatacaaaaagctgttgccattgcag	Protospacer
 *  ..**** ****.************** .

57. spacer 2.16|1550048|32|NZ_CP003328|CRISPRCasFinder,CRT,PILER-CR matches to JX094500 (Cronobacter phage CR5, complete genome) position: , mismatch: 9, identity: 0.719

ctcgggataatcatccactgctcacctgaaat	CRISPR spacer
agcgggataatcatcgacttctcaccgccggt	Protospacer
  ************* *** ******   ..*

58. spacer 2.20|1550288|32|NZ_CP003328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012702 (Sphingopyxis macrogoltabida strain EY-1 isolate activated sludge plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.719

actagcggaggctcaacaatgacggaaggtaa	CRISPR spacer
atcgtggcaggctcaaaactgacggaaggtag	Protospacer
*...  * ******** * ************.

59. spacer 2.20|1550288|32|NZ_CP003328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033227 (Sphingobium yanoikuyae strain SJTF8 plasmid pF1, complete sequence) position: , mismatch: 9, identity: 0.719

actagcggaggctcaacaatgacggaaggtaa	CRISPR spacer
atcgtggcaggctcaaaactgacggaaggtag	Protospacer
*...  * ******** * ************.

60. spacer 1.2|288291|32|NZ_CP003328|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026928 (Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence) position: , mismatch: 10, identity: 0.688

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
tcgcggcaagaagatttaaccgtcatcgaaat	Protospacer
  .  .* ************ *****.****

61. spacer 1.2|288291|32|NZ_CP003328|PILER-CR,CRISPRCasFinder,CRT matches to GU943040 (Uncultured phage MedDCM-OCT-S09-C28 genomic sequence) position: , mismatch: 10, identity: 0.688

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
gaaacactagaacttttaacggttcaggcggt	Protospacer
************  *********.   * ..

62. spacer 1.3|288351|32|NZ_CP003328|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025547 (Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

attcgatttccagtgccgaaaatccatgccct	CRISPR spacer
gctgctgttccagccccgaaaatccatgccga	Protospacer
..*    ******. ***************

63. spacer 1.9|288711|32|NZ_CP003328|PILER-CR,CRISPRCasFinder,CRT matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

tttaagctacgtttatccgcaagattcactac	CRISPR spacer
acaaagccacggttatccgcaagattgtagag	Protospacer
 . ****.*** **************    *

64. spacer 2.9|1549628|32|NZ_CP003328|CRISPRCasFinder,CRT matches to MH271312 (Microbacterium phage RobsFeet, complete genome) position: , mismatch: 10, identity: 0.688

acgtgatgacgtgctcatctgcgctgtggctt	CRISPR spacer
ctccgccaacgtgctcatctgggccgtggctc	Protospacer
 . .* ..************* **.******.

65. spacer 2.9|1549628|32|NZ_CP003328|CRISPRCasFinder,CRT matches to MK524510 (Microbacterium phage Fireman, complete genome) position: , mismatch: 10, identity: 0.688

acgtgatgacgtgctcatctgcgctgtggctt	CRISPR spacer
ctccgccaacgtgctcatctgggccgtggctc	Protospacer
 . .* ..************* **.******.

66. spacer 2.20|1550288|32|NZ_CP003328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023452 (Rhizorhabdus dicambivorans strain Ndbn-20 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

actagcggaggctcaacaatgacggaaggtaa	CRISPR spacer
atcgtgacaggctcaaaactgacggaaggtag	Protospacer
*...  . ******** * ************.

67. spacer 2.20|1550288|32|NZ_CP003328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009296 (Novosphingobium pentaromativorans US6-1 plasmid pLA2, complete sequence) position: , mismatch: 10, identity: 0.688

actagcggaggctcaacaatgacggaaggtaa	CRISPR spacer
atcgtgacaggctcaaaactgacggaaggtag	Protospacer
*...  . ******** * ************.

68. spacer 2.20|1550288|32|NZ_CP003328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022749 (Sphingobium hydrophobicum strain C1 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

actagcggaggctcaacaatgacggaaggtaa	CRISPR spacer
atcgtgacaggctcaaaactgacggaaggtag	Protospacer
*...  . ******** * ************.

69. spacer 2.20|1550288|32|NZ_CP003328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033229 (Sphingobium yanoikuyae strain SJTF8 plasmid pF3, complete sequence) position: , mismatch: 10, identity: 0.688

actagcggaggctcaacaatgacggaaggtaa	CRISPR spacer
atcgtgacaggctcaaaactgacggaaggtag	Protospacer
*...  . ******** * ************.

70. spacer 2.20|1550288|32|NZ_CP003328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015989 (Sphingobium sp. EP60837 plasmid pEP2, complete sequence) position: , mismatch: 10, identity: 0.688

actagcggaggctcaacaatgacggaaggtaa	CRISPR spacer
atcgtgacaggctcaaaactgacggaaggtag	Protospacer
*...  . ******** * ************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

362755 : 398548

Pseudomonas_phage(54.84%)

transposase,holin,tail,integrase

attL 354792:354810|attR 377369:377387

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
354792:354810	attL	NA	NA	NA	NA
WP_014668270.1\|362755_363316_-	DUF5420 family protein	A0A0M3LP85	Mannheimia_phage	8.2e-18	29.7
WP_014668269.1\|363325_363871_-	hypothetical protein	NA	NA	NA	NA
WP_005755637.1\|363867_364095_-	hypothetical protein	NA	NA	NA	NA
WP_014668268.1\|364095_364263_-	hypothetical protein	NA	NA	NA	NA
WP_005755634.1\|364264_364885_-	DUF3164 family protein	A0A0M3LQ92	Mannheimia_phage	1.2e-67	60.2
WP_032851712.1\|364904_365159_-	hypothetical protein	NA	NA	NA	NA
WP_005755632.1\|365133_365355_-	hypothetical protein	NA	NA	NA	NA
WP_014668267.1\|365364_365688_-	hypothetical protein	NA	NA	NA	NA
WP_014668266.1\|365690_366869_-	AAA family ATPase	Q6QIE1	Burkholderia_phage	4.6e-111	54.8
WP_014668265.1\|366880_368650_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6QIE0	Burkholderia_phage	1.8e-148	46.5
WP_014668264.1\|368661_369606_-	hypothetical protein	J9SND0	Pseudomonas_phage	2.3e-28	31.5
WP_005755623.1\|369616_369931_-	hypothetical protein	Q5ZR02	Pseudomonas_phage	5.8e-13	41.1
WP_014668263.1\|369943_370129_-	hypothetical protein	NA	NA	NA	NA
WP_005755620.1\|370208_370445_-	DNA-binding protein	NA	NA	NA	NA
WP_025248436.1\|370509_370737_+	hypothetical protein	NA	NA	NA	NA
WP_005755617.1\|370913_371324_+	helix-turn-helix transcriptional regulator	Q6QID2	Burkholderia_phage	8.9e-14	39.4
WP_025248437.1\|371354_371882_+	hypothetical protein	NA	NA	NA	NA
WP_014668261.1\|371894_372485_+	hypothetical protein	NA	NA	NA	NA
WP_014668260.1\|372542_372782_+	hypothetical protein	NA	NA	NA	NA
WP_014668259.1\|373023_373395_+\|holin	putative holin	Q6QIC8	Burkholderia_phage	2.6e-20	53.2
WP_014668258.1\|373396_373996_+	transglycosylase SLT domain-containing protein	J9SHG5	Pseudomonas_phage	2.7e-59	55.7
WP_014668257.1\|373980_374427_+	hypothetical protein	NA	NA	NA	NA
WP_005755594.1\|374523_374874_+	hypothetical protein	Q6QIC4	Burkholderia_phage	5.3e-07	33.6
WP_005755593.1\|374875_375181_+	hypothetical protein	A0A2H4JGU5	uncultured_Caudovirales_phage	8.7e-22	53.0
WP_014668255.1\|375192_375732_+	DUF3486 family protein	A4JWJ3	Burkholderia_virus	4.0e-46	51.7
WP_025248438.1\|375731_377348_+	hypothetical protein	Q6QIC1	Burkholderia_phage	2.9e-185	64.6
WP_014668253.1\|377350_378874_+	DUF935 family protein	Q5ZQY4	Pseudomonas_phage	2.5e-149	53.5
377369:377387	attR	NA	NA	NA	NA
WP_025248439.1\|378857_380096_+	hypothetical protein	J9STS2	Pseudomonas_phage	6.7e-105	46.9
WP_014668251.1\|380193_380694_+	phage virion morphogenesis protein	Q5ZQY1	Pseudomonas_phage	3.1e-32	41.7
WP_014668250.1\|380911_381913_+	peptidase	Q5ZQY0	Pseudomonas_phage	8.0e-40	54.6
WP_014668249.1\|381909_382275_+	DUF2190 family protein	NA	NA	NA	NA
WP_005755585.1\|382335_383259_+	hypothetical protein	A0A0S4L2T7	Pseudomonas_phage	1.8e-102	60.7
WP_005755584.1\|383268_383775_+	DUF1320 domain-containing protein	Q5ZQX5	Pseudomonas_phage	1.6e-28	42.1
WP_014668248.1\|383774_384221_+	hypothetical protein	A0A0S4L2X9	Pseudomonas_phage	1.5e-14	30.9
WP_014668247.1\|384217_384478_+	hypothetical protein	NA	NA	NA	NA
WP_005755580.1\|384470_385217_+	hypothetical protein	A0A2D1GNQ7	Pseudomonas_phage	1.2e-59	49.2
WP_014668246.1\|385277_385703_+	hypothetical protein	A0A2D1GNY5	Pseudomonas_phage	3.0e-20	40.4
WP_014668245.1\|385912_386128_-	hypothetical protein	NA	NA	NA	NA
WP_014668244.1\|386140_389488_+	tape measure protein	A0A2D1GNK1	Pseudomonas_phage	3.8e-118	32.5
WP_014668243.1\|389497_390490_+	hypothetical protein	A0A2D1GMZ0	Marinobacter_phage	5.2e-23	27.5
WP_005755570.1\|390491_391454_+	hypothetical protein	NA	NA	NA	NA
WP_014668242.1\|391461_393141_+	hypothetical protein	J9STL4	Pseudomonas_phage	4.4e-91	38.6
WP_014668241.1\|393154_393964_+	phage BR0599 family protein	A0A2D1GNT2	Pseudomonas_phage	1.7e-77	50.5
WP_005755565.1\|393980_394232_+	hypothetical protein	A0A2D1GNV4	Pseudomonas_phage	4.6e-21	59.2
WP_014668240.1\|394235_394436_+	hypothetical protein	A0A2D2W288	Stenotrophomonas_phage	1.2e-08	45.8
WP_025248440.1\|394435_397225_+\|tail	phage tail protein	A0A2D1GNP9	Pseudomonas_phage	2.0e-181	46.0
WP_005755559.1\|397290_397551_+	hypothetical protein	B7SDP6	Haemophilus_phage	5.8e-19	57.3
WP_005755558.1\|397702_398548_+	hypothetical protein	F6MIM2	Haemophilus_phage	2.4e-101	62.4

DBSCAN-SWA_2

1093259 : 1102617

Sinorhizobium_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014326205.1\|1093259_1094534_+	multifunctional CCA addition/repair protein	A0A0F6YPT7	Sinorhizobium_phage	1.8e-92	49.5
WP_005753554.1\|1094574_1095192_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_014326206.1\|1095191_1096079_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_025248491.1\|1096148_1097096_+	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	1.5e-43	39.0
WP_005753553.1\|1097171_1098725_-	murein DD-endopeptidase MepM	A0A2K9VGT1	Pontimonas_phage	8.4e-20	49.6
WP_010906540.1\|1098959_1099751_+	zinc ABC transporter ATP-binding protein ZnuC	W6JKT0	Anomala_cuprea_entomopoxvirus	4.4e-17	29.7
WP_005724066.1\|1099759_1100545_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_005724065.1\|1100621_1101602_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-15	26.4
WP_014326208.1\|1101618_1102617_-	dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.3e-15	29.4

DBSCAN-SWA_3

1449775 : 1459213

Lactococcus_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010907422.1\|1449775_1452178_+	ribonuclease R	Q0GXV6	Lactococcus_phage	5.2e-69	33.2
WP_005725044.1\|1452178_1452916_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_038641419.1\|1453000_1453561_-	superoxide dismutase family protein	Q9MC02	Salmonella_phage	1.6e-50	61.8
WP_025248516.1\|1453631_1456463_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	57.2
WP_005719438.1\|1456634_1457135_+	single-stranded DNA-binding protein	I3PUY5	Vibrio_phage	4.0e-40	55.6
WP_014325726.1\|1457317_1457782_+\|transposase	IS200/IS605 family transposase	A0A0A8WIU6	Clostridium_phage	2.3e-13	36.1
WP_005725034.1\|1458358_1459213_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	5.8e-31	40.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP003328

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection