CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP006569	Sodalis praecaptivus strain HS1 chromosome, complete genome	15 crisprs	cas3,DEDDh,DinG	1	3	2	0
NZ_CP006570	Sodalis praecaptivus strain HS1 plasmid pHS1, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP006569_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006569_1

875516-875677

Orphan

Consensus_repeat	Method
CGTCAGCGCCACCCGCGGCGATGCCCCTGGGTGCGAGGGTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006569_1

>merge|NZ_CP006569|1|875516-875677|CRISPRCasFinder
CGTCAACGCCACCCGCGGCAATGCCCCCGGTGCGAGGGGCGTCAGCGCCACCCGCGGCGATGCCCCTGGGTGCGAGGGTCGTCAGCGCCACTCGCGGCAATCCCCTTTGGCAGCTAGGGTCGTCAGCGCCACCCGCAGCGATGCCCCTGGGTGCGAGGGTCG

>NZ_CP006569|1|1|875516-875677|CRISPRCasFinder
CGTCAACGCCACCCGCGGCAATGCCCCCGGTGCGAGGGGCGT	CAGCGCCACCCGCGGCGATGCCCCTGGGTGCGAGGGTCGTCAGCGCCACTCGCGGCAATCCCCTTTGGCAGCTAGGGT
CGTCAGCGCCACCCGCAGCGATGCCCCTGGGTGCGAGGGTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006569.1\|WP_025421018.1\|883713_884277_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NZ_CP006569.1\|WP_025421005.1\|868537_869056_-\|flavodoxin-FldB	unknown	unknown	gnl\|CDD\|183471
NZ_CP006569.1\|WP_025421004.1\|868090_868498_+\|membrane-protein	unknown	unknown	gnl\|CDD\|369290
NZ_CP006569.1\|WP_148296233.1\|872705_873804_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NZ_CP006569.1\|WP_025421014.1\|879148_880006_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270417
NZ_CP006569.1\|WP_162149615.1\|884968_885415_-\|carbohydrate-porin	unknown	unknown	gnl\|CDD\|367007
NZ_CP006569.1\|WP_025421022.1\|885747_886005_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP006569.1\|WP_025421008.1\|870856_872593_+\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|182944
NZ_CP006569.1\|WP_025421006.1\|869157_870057_+\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
NZ_CP006569.1\|WP_025246815.1\|867843_868110_+\|FAD-assembly-factor-SdhE	unknown	unknown	gnl\|CDD\|182803
NZ_CP006569.1\|WP_025421003.1\|866644_867631_-\|tRNA-modifying-protein-YgfZ	unknown	unknown	gnl\|CDD\|236567
NZ_CP006569.1\|WP_025421010.1\|873813_875334_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP006569.1\|WP_025421013.1\|878349_879075_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226634
NZ_CP006569.1\|WP_025421015.1\|880523_881465_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
NZ_CP006569.1\|WP_025421007.1\|870132_870849_+\|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC	unknown	unknown	gnl\|CDD\|182802
NZ_CP006569.1\|WP_025421002.1\|865883_866534_+\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|185044
NZ_CP006569.1\|WP_025421017.1\|882666_883551_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380805
NZ_CP006569.1\|WP_051440101.1\|881710_881974_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006569.1\|WP_025421012.1\|877633_878350_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226670
NZ_CP006569.1\|WP_025421011.1\|876130_877597_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349922

Protein	Function_ID	Function_description	E-value
NZ_CP006569.1\|WP_025421018.1\|883713_884277_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	3.56794e-23
NZ_CP006569.1\|WP_025421005.1\|868537_869056_-\|flavodoxin-FldB	gnl\|CDD\|183471	PRK12359, PRK12359, flavodoxin FldB; Provisional.	9.75883e-127
NZ_CP006569.1\|WP_025421004.1\|868090_868498_+\|membrane-protein	gnl\|CDD\|369290	pfam07254, Cpta_toxin, Membrane-bound toxin component of toxin-antitoxin system. CptA is a family of bacterial proteins named for the member of this family, YGFX_ECOLI. YgfX was previously thought to be the toxic part of a toxin-antitoxin module along with the antitoxin, pfam03937 Sdh5. However, studies have shown that, YgfX interferes with correct cell division and morphology. Furthermore, the function of YgfX-SdhE as a TA system could not be demonstrated in either E. coli or Serratia sp. ATCC 39006. YgfX is predicted to have a short N-terminal cytoplasmic domain followed by two transmembrane helices (TMHs) separated by a short periplasmic loop and finally, a larger C-terminal cytoplasmic domain. The TMHs of YgfX are required for activity, but the sequence of the cytoplasmic 13 N-terminal amino acids is not essential. Furthermore, the amino acids W34 and D117 are not required for localization but are necessary for YgfX multimerization, interaction with SdhE, and YgfX activity. It is proposed that the formation of YgfX multimeric membrane-bound proteins are required to enable the interaction with the cytoplasmic SDH assembly factor SdhE. Another study has demonstrated that sdhEygfX (bicistronic operon) affects pig biosynthesis, directly or indirectly, at the level of transcription of the biosynthetic operon (pigA-O). It has also been suggested that, in addition to indirect transcriptional activation of pigA-O, YgfX might facilitate the formation of a terminal pig biosynthetic complex consisting of PigB and PigC.	1.9854e-60
NZ_CP006569.1\|WP_148296233.1\|872705_873804_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_CP006569.1\|WP_025421014.1\|879148_880006_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270417	cd13699, PBP2_OccT_like, Substrate binding domain of ABC-type octopine transporter-like; the type 2 periplasmic-binding protein fold. This group includes periplasmic octopine-binding protein and related proteins. This group belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.37805e-100
NZ_CP006569.1\|WP_162149615.1\|884968_885415_-\|carbohydrate-porin	gnl\|CDD\|367007	pfam02264, LamB, LamB porin. Maltoporin (LamB protein) forms a trimeric structure which facilitates the diffusion of maltodextrins across the outer membrane of Gram-negative bacteria. The membrane channel is formed by an antiparallel beta-barrel.	2.87281e-19
NZ_CP006569.1\|WP_025421022.1\|885747_886005_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	1.50159e-19
NZ_CP006569.1\|WP_025421008.1\|870856_872593_+\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|182944	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ.	0
NZ_CP006569.1\|WP_025421006.1\|869157_870057_+\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	0
NZ_CP006569.1\|WP_025246815.1\|867843_868110_+\|FAD-assembly-factor-SdhE	gnl\|CDD\|182803	PRK10878, PRK10878, FAD assembly factor SdhE.	1.99818e-42
NZ_CP006569.1\|WP_025421003.1\|866644_867631_-\|tRNA-modifying-protein-YgfZ	gnl\|CDD\|236567	PRK09559, PRK09559, putative global regulator; Reviewed.	0
NZ_CP006569.1\|WP_025421010.1\|873813_875334_+\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP006569.1\|WP_025421013.1\|878349_879075_+\|ABC-transporter-permease	gnl\|CDD\|226634	COG4160, ArtM, ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism].	5.55231e-93
NZ_CP006569.1\|WP_025421015.1\|880523_881465_+\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	1.64866e-18
NZ_CP006569.1\|WP_025421007.1\|870132_870849_+\|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC	gnl\|CDD\|182802	PRK10877, PRK10877, protein disulfide isomerase II DsbC; Provisional.	5.87479e-161
NZ_CP006569.1\|WP_025421002.1\|865883_866534_+\|hemolysin-III-family-protein	gnl\|CDD\|185044	PRK15087, PRK15087, hemolysin; Provisional.	9.83576e-128
NZ_CP006569.1\|WP_025421017.1\|882666_883551_+\|hypothetical-protein	gnl\|CDD\|380805	cd20235, PFM_spherulin-2a-like, pore-forming module of Physarum polycephalum spherulin-2a, Plodia interpunctella follicular epithelium yolk protein subunit YP4, and similar aerolysin-type beta-barrel pore-forming proteins. Spherulin 2a is a coat glycoprotein produced during encystment from the slime mold, Physarum polycephalum. YP4, is one of two subunits of the follicular epithelium yolk protein from Plodia interpunctella and other pyralid moths; it is produced in the follicle cells during vitellogenesis, and after secretion it is taken up into the oocyte and stored in the yolk spheres for utilization during embryogenesis. Members of this group belong to the aerolysin family of beta-pore-forming proteins (beta-PFPs). PFPs are generally secreted as water-soluble monomers, which upon binding to target lipid membranes, oligomerize and form transmembrane pores harmful to cells. Beta-PFPs form pores by transmembrane beta-barrels. Aerolysin-type beta-PFPs are believed to use an amphipathic beta-hairpin to form the beta-barrel, are found in all kingdoms of life and many are bacterial toxins. In addition to having a role in microbial infection, they have potential as biotechnological sensors and delivery systems. They share a similar monomeric architecture, with a variable membrane-binding domain and a structurally conserved pore-forming region. A significant portion of the monomeric subunit structure is re-organized to form the pore. Oligomers formed by members of the aerolysin family include: hepta- (aerolysin), octa- (Dln1), and nonameric oligomers (lysenin and monalysin).	5.96483e-54
NZ_CP006569.1\|WP_025421012.1\|877633_878350_+\|ABC-transporter-permease-subunit	gnl\|CDD\|226670	COG4215, ArtQ, ABC-type arginine transport system, permease component [Amino acid transport and metabolism].	4.10288e-72
NZ_CP006569.1\|WP_025421011.1\|876130_877597_+\|amidohydrolase	gnl\|CDD\|349922	cd05673, M20_Acy1L2_AbgB, M20 Peptidase Aminoacylase 1-like protein 2 aminobenzoyl-glutamate utilization protein B subfamily. Peptidase M20 family, ACY1L2 aminobenzoyl-glutamate utilization protein B (AbgB) subfamily. This group contains mostly bacterial amidohydrolases, including gene products of abgB that catalyze the cleavage of p-aminobenzoyl-glutamate, a folate catabolite in Escherichia coli, to p-aminobenzoate and glutamate. p-Aminobenzoyl-glutamate is a natural end product of folate catabolism, and its utilization is initiated by the abg region gene product, AbgT, by enabling uptake of its into the cell in a concentration-dependent, saturable manner. It is subsequently cleaved by AbgA and AbgB (sometimes referred to as AbgAB).	0

>NZ_CP006569.1|WP_025421010.1|873813_875334_+|lysine--tRNA-ligase
MSESHSQDGAPQALDLNNELRSRREKLSQLRQQGIAFPNDFRRDAVSDQLHARYGEKSNEELEALNIEVSIAGRMMTRRIMGKASFATLQDVGGKIQLYVARDDLPEGQYNEQFKKWDLGDILGARGKLFKTRTGELSIHCSEIRLLTKAMRPLPDKFHGLADQETRYRQRYLDLIANDESRQTFKVRSRIMAEIRRFMLDHDFMEVETPMMQTIPGGAAARPFITHHNALDIDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGLSPRHNPEFTMMELYMAYADYRDLIVLVEDLFRTLTQRVLGSSVVQYGDQTFDFGKPFTQMTMKEAICHYRPETRPEALDDMASATAIAESLGIKVDKGWGLGRVQTEIFEETAESHLIQPTFITAYPAEVSPLARRNDENPFFTDRFEFFIGGREIGNGFSELNDAEDQAARFAEQVQAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGIDRLMMLLTNSHTIRDVILFPALRPQK
>NZ_CP006569.1|WP_148296233.1|872705_873804_+|peptide-chain-release-factor-2
MFEINPVKNRIQDLSERTAVLRGYLDYDLKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAIVETIDKLTQGVEDVSGLLELAVEEDDEETFLETQSELDGLEAKLGQLEFRRMFSGEYDSADCYVDIQAGSGGTEAQDWASMLLRMYLRWAESRGFKTEIIEESEGEVAGIKSVTVKVIGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHLPTNIVTQCQNDRSQHKNKDQAMKQLKAKLYEFELQKKNAEKQALEDTKSDIGWGSQIRSYVLDDSRIKDLRTGVETRNTQSVLDGDLDKFIEASLKAGL
>NZ_CP006569.1|WP_025421008.1|870856_872593_+|single-stranded-DNA-specific-exonuclease-RecJ
MNMTTELRRRPLGDIALLAEADIPPLLKRLYVQRGVCAVDELERGARGLLAYHSLTGVEQAVDLLVGALADQRRLMVVGDFDADGATSTALTVLALRQMGAQTIEFLVPNRFDDGYGLSPEVVEQAAARGAQVIVTVDNGISSHAGVTLAHEKGIPVLITDHHLPGDTLPAADAIVNPNLRGCAFASKSLAGVGVAFYLMLALRARLNDSGWFTQQGIAAPKLAELLDLVALGTVADVVPLDANNRILVHQGLSRIRAGRCRPGIRALAEVANRDLVRLCASDLGFALGPRLNAAGRLDDMSVGVALLLTDDLSQARMLAAELDALNQTRREIEQGMEAEALALCQAMARDEQPMPFGLAIYHAQWHQGVVGILASRIKERFHRPVIAFAPAGDGVLKGSGRSVAGLHMRDLLERLDTLHPGLMLKFGGHAMAAGLTLEQTQFDRFRQRFAELVDEWLDPAMLEGVIWSDGELAGPELSLTTAELLRDGGPWGQAFPDPLFDGRFRVLNQRLVGEKHLKLLLEPLAGGPMLDGIAFNIDPRLWPDNSVHTVELAYKLEVNEFRGNRSLQLLIQHIWPL
>NZ_CP006569.1|WP_025421007.1|870132_870849_+|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC
MNKSLVLFSVMALALVPLAHADDAAIKHSLSRLGIHSADIQPSPVAGLKTVLTESGVLYVSDDGRHVIQGPLYDVGSDHPVNVTNQLLGKRLNALQKEMIIFKAPQEKHVVTVFTDITCGYCHKLHEQIKDYNALGITIRYLAFPRQGLNSQTERDMASVWCSANPKDAFTQAMNGGNVQPATCDIDISKHYTLGVQYGIQGTPALLLDNGTLIPGYQSPKELAAILDQQGTGQASGG
>NZ_CP006569.1|WP_025421006.1|869157_870057_+|site-specific-tyrosine-recombinase-XerD
MEQPDDVIIEQFLDALWLERNLAENTLASYRLDLQALAAWLRRQQRDCLSASAVDLQAFLADRLDHGYKATSSARLLSATRRFFQYLYREKLRTDDPSAGISAPKLPQRLPKDLSEAQVGDLLAAPTIADPVELRDKAMLEVLYATGLRVSELVGLTLSDVSLRQGVVRVIGKGDKERLVPLGEEAVYWIEYYLEHGRPALTHGQSLDILFPSNRSRKMTRQTFWHRIKHYAILAGIDSERLSPHVLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATERLKIIHQQHHPRA
>NZ_CP006569.1|WP_025421005.1|868537_869056_-|flavodoxin-FldB
MKVGLFYGSSTCYTEMAAEKIRDILGAELVDLHNLKDVPVQRMADYTVLILGIPTWDFGEIQEDWEAVWPQLSTLDLRGKIIALYGMGDQLGYGEWFLDALGYLHDVLQPLGASFIGYWPTDGYEFTSQKAVTPDGNHFVGLALDEVNQYDLSEQRLQQWCEQILTEMAALL
>NZ_CP006569.1|WP_025421004.1|868090_868498_+|membrane-protein
MALWRCDIRVSWRTQLCSLAFYGILIMLILLSPWPENYGLVWLTLVLVVVFECIRSQRNIMSCRGELVLMSDSSIQWHREEWTFTRKAWMLKGGVLLSLRKAGGTRRRRLWLAADSMDGREFRHLRQLLARQTGF
>NZ_CP006569.1|WP_025246815.1|867843_868110_+|FAD-assembly-factor-SdhE
MDITNKARIHWACRRGMRELDIAIMPFFEQDFDALDDQDKRRFVRLLECDDPDLFNWLMNHGQPDDRELQQIISMIQTRNKARGPLAM
>NZ_CP006569.1|WP_025421003.1|866644_867631_-|tRNA-modifying-protein-YgfZ
MSSQVPFPPRLPSPSSHLPLTLISLEDWALITLNGPDSVKYLQGQLTCDVASLEADRFSFAAHCDAKGKMFSHLCVFHHQEGMALIERRSVRDSQLAELKKYAVFSKTTIAADDEAVLLGVAGFQAQAALGGLFASIPDAAHPVAHHQDTTLLFFNLPAPRFLLITTPAVRDALQHKLEGQAQLNDSRQWLALDIEAGYPVIDSANGAQFIPQAANVQALDGISFNKGCYAGQEMVARAKYRGANKRALYWLAGKAGHLPVAGDDLELKLGDNWRRTGTVLAACQLEDSSVWIQAVLNNDLPPDSQLRVRDDAAGALAVRPLPYVIGE
>NZ_CP006569.1|WP_025421002.1|865883_866534_+|hemolysin-III-family-protein
MRNKPLAKSYSLAEEIANSVSHGVGVIFGIVGLVLMLNQAGEAGATALAVTSYSLYGGSMILLYLASTLYHAIPHPPAKRWLKKVDHCAIYLLIAGTYTPFLLIGLASPLAKWLMVVIWVMAAVGVLFKLVFAHRFRAISIITYLTMGWLSLVVIYQLVQRLPAGGVALLAAGGVVYSLGVVFYVWDRIPFNHAIWHGFVLGGTVCHFLAIYLFVA
>NZ_CP006569.1|WP_025421011.1|876130_877597_+|amidohydrolase
MDASTPVSTPSTAQPDSRTLEEIWSLIEASRAQFCALSDSIWATPELNYAEVQSSAQIAAMLEQQGFRIERGIAGIPTAMVGEAGEGGPVIAILGEYDALPGLSQQADVAEPRPVTAGGNGHGCGHHLLGSAALQAASAVKDFLAARNLPGRVRFYGCPAEEGGSAKGFMVRAGVFDDVDIAISWHPNAFSGVIEANSLACNEINYHFSGRAAHASASPHLGRSALDAVELMNVGVNYMREHMPSSARIHYAVTDTGGHSPNVVQARATVRYLIRARELPALQQLVKRVDNIAAGAALMSETTVTSQVLSGDANLIGNSLLEERMQAHLELLGPPPFSEAERDYAARFQQTLSQDDLKSAYDRYGLPVDYHRPLCDFVLPLRRPYSDMVGSTDVGSVSWVVPTVQVYGATYAIGTPGHSWQLVAQGKAAAAHKGMIHAAKIMASTAVDLLQHPELIAQAKAEHRARLNGVEFINPIPEGVAPPFPDND
>NZ_CP006569.1|WP_025421012.1|877633_878350_+|ABC-transporter-permease-subunit
MQTINFWQLVSFGEHGWGAMLLSGMAVTIALSLCGFVLSAVIGALVAWAKIAGNAPLRIAGDIYTTVLRGIPDLLVIYLFYFGGSSLLSALGGLFHADGFIAFPGFLAGMLAVGITAGAQQTEVFRGAYRAISPGELEAAVACGMVRATRLRRIIAPLTLRFALPAMGNVWQLVLKESALISVTGVAELLTQAQTGSGSTGRPFDFYIAAALLYLLISALSGWSLRKAEHHYSRGATR
>NZ_CP006569.1|WP_025421013.1|878349_879075_+|ABC-transporter-permease
MDFEFLRDTLMQLLPGVPLTLELAIGSVALGFFLALLLALMRLSGVWILDTIARLYVFAFRGSPLLVQMFLIYYGLGQFPAVRESVLWPILREPYWCALLSLTLCTAAYASEIIRGGLLSVPGGHIEAAYACGMTRQKVFRRIILPVAMRQALPAYGNEMISMVKSTSLASIITLMEITGIAAGIIAETYRALEVFLVAGALYLAINLVLTRLLQWLEYRLTPHLRPQQNLSYVKNTRHAS
>NZ_CP006569.1|WP_025421014.1|879148_880006_+|transporter-substrate-binding-domain-containing-protein
MKLSTMVCALCMTATLLGSVSAQAAEGKKWTTVRIGTEGAFRPFNFTKPDGTLDGFEIDLYKVLCKSMQVTCEIVVQPFTGMIPALQAGKFDAIMSGMSATDKRRQVIDFSVPYSNSGQTFATLKNSPLAKLPDTGMRFSLTKDEAGAIKELDKIKPALQDKVIGVQTASIAATFLNKYLQGVVKVREYKTTEEHDLDLAAGRVDLVIASVTYLNGAREKPGNANMVLAGPQFIGGLLGSGSAIGLRKSDPELKKMFDDAIMKAKQDGTLKTLGLKWFGQDITPQ
>NZ_CP006569.1|WP_025421015.1|880523_881465_+|alpha/beta-hydrolase
MNRRRFITLSSSALMAMRTGNALARKHFVVGAFPPENTPFGQGTDIALWHGKPPGGGGPVGSELLTVRGSLSNVVNPSLRIFQPKRPAGKAVLIAAGGGYKRIEMGKEAWLAARWLTRIGYTAYVLTYRLPAENWHDGSVVALQDAQRALRIVRSREKHVSVLGFSAGGHLMGMAVTRANFRSYPEHDALDRTHAYADRAALIYPVITLERPYTHTSTHKVLVGPHASEQENAKWSVQNFVTSRTPPIFLVQAEDDPVSDPHNTQIMAAACKREHVPVEMHKYSSGGHGFGLGRPGTPTVEWPAHYQRWLGEV
>NZ_CP006569.1|WP_051440101.1|881710_881974_+|hypothetical-protein
MERIVNAGNAPAVDTAQPSSLSGLPGQATKTVKEVIAQRVNAANLLSFLSSDKRIAQRLNELGLRPSSYVHLTTSGVDNIKRRLKMR
>NZ_CP006569.1|WP_025421017.1|882666_883551_+|hypothetical-protein
MKINIQPRESIEDSVVNGSGVLSEVITSDEQRLFKLEEPDIIRAITALNGREPNDVFVRSPTPWGDLYSSYRWRQVHKNTEIFSAKFLQFSSAPEIVSETELVNNSKVAGEFNVNLLTEVLNTVSSGWKVEDGISVGQKVTYGVDWLKGETSFEYTHGWGVNGEVSESVTLTTGAGVTVLLAPGQAVVAQMIASRGRARVEVEYLSHLDGLVAMNYEPPYKEHHFWGRDVASILRQNSTPNACRSTEVIEIAMYSKARVELRDKANKDLLKTVWLNEEAKPIGNSVASAELCRE
>NZ_CP006569.1|WP_025421018.1|883713_884277_-|RNA-polymerase-sigma-factor
MTKAAERRRDLVAALRGCQHRLRAFIAGRTSNIADAEDVYQEITYQLIKADSYLHPIEQVAAWLFRAARNELIDRSRKKRERLFSDEFDSDWPEGDELAEVLFDSQDDAENHYLRQLILTELELALADMSPQQREAFAKTELQGYSFKALADETGIAVETLLSRKHQAVLFLRLRLQGLYDAVIGDE
>NZ_CP006569.1|WP_162149615.1|884968_885415_-|carbohydrate-porin
MVPIPHYSLRPKRGAWPVMAWSTWRPTGISRPRCWRSTAQTDIGGDDYRWLTINARLMQDINDNVVLAYAASWQYRDLDPNGYQEYQKGHGNFYKLTFAPTFRASNISPFFTRPKLHLFATWMNWDNALDNDSPNDILGQNDFASGGE
>NZ_CP006569.1|WP_025421022.1|885747_886005_+|helix-turn-helix-transcriptional-regulator
MHYCQVSKSQLYRLFQTTFNQSPLKWQKNYRLSQARRLRVETDKSIARIAGQVGYNDPLHFSRDFHRAVGVAPTVFRRREKFHKE

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Crispr_ID: NZ_CP006569_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006569_2

1415347-1415468

Orphan

Consensus_repeat	Method
CAGGCATTGGGCGGGCGTTCAAAGGTCCAGCCCGCGATTAGATGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006569_2

>merge|NZ_CP006569|2|1415347-1415468|CRISPRCasFinder
CAGGCATTGGGCGGGCGTTCAAAGGTCCAGCCCGCGATTAGATGCCTAGATTTCAAGCTACCGTGCGGCGTATGGGCAGGCATTGGGCGGGCGTTCAAAGGTCCAGCCCGCGATTAGGTGCC

>NZ_CP006569|2|2|1415347-1415468|CRISPRCasFinder
CAGGCATTGGGCGGGCGTTCAAAGGTCCAGCCCGCGATTAGATGCC	TAGATTTCAAGCTACCGTGCGGCGTATGGG
CAGGCATTGGGCGGGCGTTCAAAGGTCCAGCCCGCGATTAGGTGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006569.1\|WP_025421461.1\|1429729_1430719_-\|L-glyceraldehyde-3-phosphate-reductase	unknown	unknown	gnl\|CDD\|381377
NZ_CP006569.1\|WP_025421451.1\|1412726_1413752_-\|BMP-family-protein	unknown	unknown	gnl\|CDD\|380527
NZ_CP006569.1\|WP_038668312.1\|1415732_1416179_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP006569.1\|WP_025421446.1\|1406474_1408499_+\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP006569.1\|WP_025421449.1\|1409981_1411091_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226962
NZ_CP006569.1\|WP_025421448.1\|1409029_1409962_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224005
NZ_CP006569.1\|WP_025421445.1\|1405207_1406221_+\|cell-division-protein-ZipA	unknown	unknown	gnl\|CDD\|235124
NZ_CP006569.1\|WP_025421462.1\|1430893_1431586_+\|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl\|CDD\|224707
NZ_CP006569.1\|WP_051440216.1\|1411087_1412722_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226364
NZ_CP006569.1\|WP_025421452.1\|1413844_1414294_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006569.1\|WP_025421457.1\|1420794_1423362_-\|peptidase-M60	unknown	unknown	gnl\|CDD\|367432
NZ_CP006569.1\|WP_025421459.1\|1426928_1428113_-\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NZ_CP006569.1\|WP_025421458.1\|1425051_1426461_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP006569.1\|WP_025421456.1\|1418921_1420442_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP006569.1\|WP_025421447.1\|1408521_1408737_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378970
NZ_CP006569.1\|WP_025421444.1\|1404212_1404986_-\|sulfate-transporter-CysZ	unknown	unknown	gnl\|CDD\|179898
NZ_CP006569.1\|WP_025421455.1\|1417673_1418909_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|185090
NZ_CP006569.1\|WP_025421453.1\|1414833_1415277_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|182510
NZ_CP006569.1\|WP_038668317.1\|1416194_1417652_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NZ_CP006569.1\|WP_025421460.1\|1428489_1429728_+\|Mn(2+)-uptake-NRAMP-transporter-MntH	unknown	unknown	gnl\|CDD\|234815

Protein	Function_ID	Function_description	E-value
NZ_CP006569.1\|WP_025421461.1\|1429729_1430719_-\|L-glyceraldehyde-3-phosphate-reductase	gnl\|CDD\|381377	cd19151, AKR_AKR14A2, Salmonella enterica aldo-keto reductase (AKR) and similar protein. Salmonella enterica AKR is a founding member of aldo-keto reductase family 14 member A2 (AKR14A2).	0
NZ_CP006569.1\|WP_025421451.1\|1412726_1413752_-\|BMP-family-protein	gnl\|CDD\|380527	cd06304, PBP1_BmpA_Med_PnrA-like, periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type 1 periplasmic sugar-binding protein-like fold.	8.49841e-73
NZ_CP006569.1\|WP_038668312.1\|1415732_1416179_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	6.33527e-22
NZ_CP006569.1\|WP_025421446.1\|1406474_1408499_+\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP006569.1\|WP_025421449.1\|1409981_1411091_-\|ABC-transporter-permease	gnl\|CDD\|226962	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only].	7.44832e-73
NZ_CP006569.1\|WP_025421455.1\|1417673_1418909_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|185090	PRK15136, PRK15136, multidrug efflux MFS transporter periplasmic adaptor subunit EmrA.	1.72474e-154
NZ_CP006569.1\|WP_025421445.1\|1405207_1406221_+\|cell-division-protein-ZipA	gnl\|CDD\|235124	PRK03427, PRK03427, cell division protein ZipA; Provisional.	1.14494e-171
NZ_CP006569.1\|WP_025421462.1\|1430893_1431586_+\|aspartate/glutamate-racemase-family-protein	gnl\|CDD\|224707	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane].	4.52123e-115
NZ_CP006569.1\|WP_051440216.1\|1411087_1412722_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226364	COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only].	0
NZ_CP006569.1\|WP_025421448.1\|1409029_1409962_-\|ABC-transporter-permease	gnl\|CDD\|224005	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only].	1.39718e-78
NZ_CP006569.1\|WP_025421457.1\|1420794_1423362_-\|peptidase-M60	gnl\|CDD\|367432	pfam03272, Mucin_bdg, Putative mucin or carbohydrate-binding module. This family is the putative binding domain for the substrates of enhancin, and other similar metallopeptidases. This is not the enzymically active, peptidase, part of the proteins - see pfam13402.	9.6649e-43
NZ_CP006569.1\|WP_025421459.1\|1426928_1428113_-\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	2.226e-154
NZ_CP006569.1\|WP_025421458.1\|1425051_1426461_+\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP006569.1\|WP_025421456.1\|1418921_1420442_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.29054e-150
NZ_CP006569.1\|WP_025421447.1\|1408521_1408737_+\|hypothetical-protein	gnl\|CDD\|378970	pfam12843, QSregVF_b, Putative quorum-sensing-regulated virulence factor. QSregVF_b is a family of short Pseudomonas proteins that are potential virulence factors. The structure of UniProtKB:Q9HY15 a secreted protein has been solved and deposited as Structure 3npd, from pfam13652. It is predicted that these two adjacent proteins form a single transcriptional unit based on the prediction that together they interact with their adjacent protein PotD, which is the putrescine-binding periplasmic protein in the polyamine uptake system comprising PotABCD. These two adjacent proteins are predicted to be quroum-sensing-regulated virulence factors.	1.08774e-33
NZ_CP006569.1\|WP_025421444.1\|1404212_1404986_-\|sulfate-transporter-CysZ	gnl\|CDD\|179898	PRK04949, PRK04949, putative sulfate transport protein CysZ; Validated.	1.40901e-146
NZ_CP006569.1\|WP_025421453.1\|1414833_1415277_+\|acetyltransferase	gnl\|CDD\|182510	PRK10514, PRK10514, putative acetyltransferase; Provisional.	1.26607e-47
NZ_CP006569.1\|WP_038668317.1\|1416194_1417652_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	1.44132e-103
NZ_CP006569.1\|WP_025421460.1\|1428489_1429728_+\|Mn(2+)-uptake-NRAMP-transporter-MntH	gnl\|CDD\|234815	PRK00701, PRK00701, divalent metal cation transporter MntH.	0

>NZ_CP006569.1|WP_025421453.1|1414833_1415277_+|acetyltransferase
MITIRARTVTDNPPLVALWERSVRASHHFLRETDIDALRTLVAQRYLPALDVWVAEEGQHGLRGFIGLSDNHVEMLFIEAAARGGGIGQRLLDYAVALRGDLTLDVNEQNHQARGFYQHYGFVQTGRSEVDAQGNPFPLLHMQWQKR
>NZ_CP006569.1|WP_025421452.1|1413844_1414294_+|hypothetical-protein
MNARGILLSGLLLLTHTASAGDKVNYHRGNAGLQAFSVTVNNQGHLPLACQATTAHWYSVELGTLAPGATLSTRLWKNPVTGEVFILNQSQDRLPLQRAWCGIAGDAWRTRADIALPIRRSPTVAAIALRCAADADRVACRAAAPAAEK
>NZ_CP006569.1|WP_025421451.1|1412726_1413752_-|BMP-family-protein
MKFTGWKIGVGALALTSLLYPACYAAEINTIAILTPEPGTDYGWNQQGINAAREAGKQEGVKVLVADNLGYGDVRPTLRDLADDGAQLFIAHASGYNQAAPEIGAQTGIPVAITDSPSSLKAGRVADYTVSGQEGAWLAGTLAAKMSRSGTLGIVVSGEPPAWNAQAAAFVLGARAARPAIKIRYAVIGPAAYSDAAGGKRVTASVIAAGADVIFGEGNGSSFGMLQAVETTPAQDGGKVWFIDVIGDKSPIDKGHLLSSVLWNLTPVYTAMIRDLKNNQFGSHNYQTSLANGAIGLLKTPHIPDDIWAQVQAVRDRIISGEITVPADYDASTLHALLAGQ
>NZ_CP006569.1|WP_051440216.1|1411087_1412722_-|ABC-transporter-ATP-binding-protein
MADANTADTDDALPAGAPLVRLHAVTKAFPGIIANKAISLALWPGEVHVLLGENGAGKSTLVALLSGMLRPDSGRIEVAGAARQIDSPRRALALGIGTVFQHPMLVPTLTLTENLALGDAWWRPPARRRYAAAIARLGASLGVTLDPCVPVSTLSLGEQQQAEILRAVLRGSRVLILDEPTALLTPQDAERLGLLMRRLVAQGLAVVFITHKLNEALAWGDRLSVLRRGRKVGEIPPARLQALSPQMARGKVLEWMFHPTGEDAPPPADATSVSLPDDGEQAAAQTTPERFRGITGATPLLVAQHLSVADPRVPLRDITFSVAGGEILAIAGIDGNGQTQLAEALAGQRALSAGQIWLAGQSLHDCSVRERRRRGLSYITDDRLGEGTVGAFPVAENLLLKQIGAPPFWRGGIGRPARINAFARRRIRAFDIRPPDPGTLIDTLSGGNRQKVLLARELNDRARAVIFAKPTYGLDLHNSLAIRERIRQTAAQGVAVVLISTDLDELLALANRVAVLRRGQIVGMVANDTDARRRIGMLISGEAR
>NZ_CP006569.1|WP_025421449.1|1409981_1411091_-|ABC-transporter-permease
MRAPSPRRNGTAAGLRRLCLETGLTLLPIGLALLMAGLLLWLMGVDPLAYYGFILRKGLLAPSGWQASLTRMGPLLLIAASLMVAFSAGLWNLGGDGQFMLGAVLASAIAPALLSHGVPLSITLFLALLAGALAGVLWGLLPAALKIWRNINEIITSLMMSFLGVSLANVLVKLLLADPATTVPQTRNLPWEQRLPMLFGGQVSSGLLLGLLAVLLTHAVINHTAFGLRIRVMGANPRAAIHAGLPVGALTLAVFALSAGLAGLAGAVEIIGIQGNVRADWNPAYSLVVVPLVFLAQFNGFGSIALVFVFSVLSIGSESAARRMGVPNHFTLLTVALLLIVPGLTRLAVARLRQALRHRALRNIPQDGA
>NZ_CP006569.1|WP_025421448.1|1409029_1409962_-|ABC-transporter-permease
MEGLTSGFVTSLLMGAIVAGIPLLLAGLGEQLSEKAGVLNIGLEGMMLAGAWLGFLVAWRHDSMALGLWAGAAGGMMVAALMAGLCLWLRLNQIVIGIALTLGAEGATALLQQMAFSHSYPRLGGVNTLSVPWLANLPVFGKALFVQPLVVYLAVGCVPLLAWLYRASNAGLALQAAGDKPAALDAAGVSVQGTRTLAVLTTGALAGLGGAYMAQIGAGIFVPFMTQGNGFIAIVLAMLARGRPLWVLAGALLFGTCLSLTTALQVLGVNLPTDVIQMLPFITVMLVLVVFGRRAALPAALGTLWTRGAR
>NZ_CP006569.1|WP_025421447.1|1408521_1408737_+|hypothetical-protein
MEKEDLVAIANTAMPFGKYQGRMLIDLPEPYLLWFARKGEFPEGRLGQLMSLALAIKIEGLDSLITPLKQR
>NZ_CP006569.1|WP_025421446.1|1406474_1408499_+|NAD-dependent-DNA-ligase-LigA
MEQIEQQILRLREQLRHWEYLYYVESAPEVPDSEYDRVMAELRELEANRPDLLTADSPSQRVGGQAQNSFGQVRHEVPMLSLDNVFEEPGFLAFDKRVRDRLKRDDDMTYCCELKLDGLAVSLLYENGELVRAATRGDGTTGEDITANVRTIRTIPLRLKDNGDLPRLLEIRGEVFMSEAGFQRLNETAKREGGKVFANPRNAAAGSLRQLDPAITAKRPLTFYCYGVGLLEDGALPESHWERLQQFKAWGVPVSDRVSRCTGSAAVLAFYQQVHEARATLGFDIDGVVIKVDSLALQQRLGFVARAPRWAIAYKFPAQEQLTRVRDVEFQVGRTGAITPVARLEPVLVSGAMVSNATLHNADEVERLGLMIGDTVIVRRAGDVIPQIVGVVASERPEGARPVAFPSHCPVCGSDVERVEGEAVLRCTAGLVCAAQRKEALKHFVSRRAMDIDGMGDKIIDQLVERELVKTPADLFRLTKEILTRLERMGPKSAQNLLDALENAKQTTFARFLYALGIREVGEATAANLAAAYGTLDALTAADIDSLTGVQDIGKIVATHVRHFFEESHNLEVIRELLSPTIGIHWPAPVAASVAAGDNPFAGKTIVLTGSLSTLSRDEAKDRLVALGARVSGSVSAKTDLLIAGEAAGSKLSKAQQLNIPIMDEAEMMRLLGD
>NZ_CP006569.1|WP_025421445.1|1405207_1406221_+|cell-division-protein-ZipA
MMQDLRLILIVVGAVAIIALLLHGLWTSRKERSAVFRDRPVKRLKQERQDQDEPPLSERDEGVGEVRVTRVRHHDDADVGRIDDDAPFSRPAARPAHAGEGQRDDDVDPLLDEGFGQSAPGAARPHREPPQIRTAEPAMPARAQSAPGDDAEYDDDPLLPAAARAAAPQNEYRPSAPSAALDPVDEDAAQPSPVREKETVLVLHVAAHNGTVLGGEELLQSVLQAGFQFGEMNIFHRHLNPAGSGPVLFSLANMVKPGSFNPDDMADFTTPGISMFMMVPSYGDAHQNFKLMLQSAQRIADDCGGVVLDDERRMMTPQKLDGYKARIRQVLDANAGA
>NZ_CP006569.1|WP_025421444.1|1404212_1404986_-|sulfate-transporter-CysZ
MAQNDMQNETTSRSGVHYFFAGWRLIMLPGIKRYVLLPLLVNIALLGGAFWWLYRQLSVWIPQLMSYVPHWLHWLNYLLWPLCVLAVLLVFGYFFSTVANVIAAPFSGLLAERLESRLTGHDAPDSGMVALMSDTPRMLHREWVKLCYYLPRALILLALHFIPALGQTLVPVLWFLFSAWMLAIQYCDYPFDNHKVPFPAMRAALRRHKVANLQFGALVSLFTLIPVVNLVILPVAVCGATAMWVDNYRAGHTLSGS
>NZ_CP006569.1|WP_038668312.1|1415732_1416179_+|MarR-family-transcriptional-regulator
MKHFAPEQLEEVFQLGRNIHRLNSDKDRLLETWLLPHDITAAQCKVMLLMCREGLETSAELCRRMNLDSGATSRMLDRLENKNLIVRVRCTDDRRQMRLSLTDTGRVFCRQLPSIITHTLNDLMAPLTPAEFKEFARLLNKLVGPAGI
>NZ_CP006569.1|WP_038668317.1|1416194_1417652_+|efflux-transporter-outer-membrane-subunit
MPLRIRLLPLLSAMMLAGCALPYGLHTEGRALDANTLAGQQTFSSAKLSSASWPTADWWNSLGDSNLDALIRRALQNSPDLQVADARARQASASVMAAEAARMPTLDASAGITRARNARVDDYNGQGKQYGTVRTLSADFNYTFDLWGGQRAAWEAAVGRANAGEVDRQAARLTLAANVARAYNNYGEAHAMLDLAQQDLNRTHTMLGLAQRRFTAGLDSKFQYQQTESLEAAAQATLTAARQQVTAAGIRLAVLLGQGPDAARTLPRPQLIAPAAVSLPATLPAELLGRRPDLIAARWRVEAAAKDIKVSRTAFYPNLNLSAAAGTKSLLGDAFFGAPSRFFTIGPALSLPIFDGGRLRADLAGSNADYDLAVAQYNQSLVSALGDIGDAITRLASLETQVQQQTRARDIARASWDNAMQRYSAGIGNYLDALSVEQQLIQAERDLASINAQRTDTAIVLMQALGGGFQTPASLPAAPVVAQNN
>NZ_CP006569.1|WP_025421455.1|1417673_1418909_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MAESQTTPQQNAANTRADNAGAAPARNKGKRKMMLLLLLAIVVICLVAFGLYYWLHGRFYESTDDAYVTGNLVQITPQVAGTVTTIAADDGDYVKQGQLLVRLDPSDTIVAQESAEANLARVVRQVRGMYSNVDNYKAMVAARKVELQRARTDYQRRANLARDGAISQEELSHARDALTSAETSLTSAQQQLNTTFALVDDTTIASHPDVKDAAASLRSAYLNHVRSTLVAPVSGFVAKRSVQVGSRVQPGAALMAVVPLDDVWIDANFKETQLLSMRIGQPVDINADLYGGDITYHGKVESLGVGTGSAFSLLPAQNASGNWIKIVQRLPVRIRLDPDNLDHHPLRVGLSTNVTVDMHNQDGPVLAPRPLDKPRYNTDVYEHQLREADSLVTRIIHQNGVQARDAGQGQQ
>NZ_CP006569.1|WP_025421456.1|1418921_1420442_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MSEQGFRPPSLVLATIGLSLATFMQVLDTTIANVALPTISGNLGVSSEQGTWVITSFAVSNAIALPLTGWMSRRMGQTKLFLASVLLFIITSFLCGIAQNMTQLVIFRALQGFFAGPLYPMAQTLLLSIYPAAKRGMALSLLAMVTVVAPIVGPLAGGWITDNYTWPWIFFINVPIGVFAAMLVLAQLKDRPETTVTQPIDYVGLALLVLGVGLLQVVLDKGNDLDWFESVFIIVGTLISVISLVALVIWELTDKHPIIDLRLFKYRNFSFGTLALVLGYSGFFGINLLLPQWLQTQLGYTPVWAGLAAAPIGILPVFLSPLVGRYAHKFDLRLLAGGSFLVIGISCFMRSDFTTDVDYYHIAMIQGFMGIGVALFFMPTTSILLSSLPPKDIAEGSGLATFLRVLGGSFASSLTTWIWHRREIFHHAHLTEDITAYSPATQSYIEGLGGNSQSTMAQLDKLVEGQAYMLSTVDYFTLLGWIFFALILVIWLAKPPFSPQGGGGGH
>NZ_CP006569.1|WP_025421457.1|1420794_1423362_-|peptidase-M60
MHSVTQLKSIYTLTRPDWLDAAGMSKGIHHDHQHLGIILGANQTLRVRQVDTAFSSMLTLRLLNDGSKTEASYNVGRDWVEASVNAASVPFIETPYVTGAPVVEFEYPETSKILPVYRKGENEAAFFERWNSQDAELAIVDSGYALILVPKVSKPALQASGNVGSIDALITYYEGIFSFYNALCGLSFEAEHDSDWNITNRYLMKADKDDSNGGYYGGNWTAESSASVSNFWLTPQASNWGSLHEIAHGYEGHFMTGKHFSVGEVWNNIYAASYQDMMLGERKYQDGWLYNYGNKAKVEKTIFQLIAKGKPLNQWDLRSKLYFFMLMVDKAGKNAFTHFNQQYRKSCNTSDFIPYEHSLLDLLSESFAVAGEQVDVTPFIQLTGGDVTQPQRDRNKFSHAKAVYPLYQLVDKPQLEAVKNQLKLDSTLRLVDATQLKATGLKGNVSLRFNIDDFAQIYGKDLILLEGARYAYKIGIDSPTLTLRELPIGVYTLRLPTGKDRKYQPTTDYLTVKQGDNAAEITFVRKHVSPIISQEINFLGISDELFATLLVDRVQGKLIIDVFTTTPHYYFPGVTYAKIVVRNPQGTITFTKEIPGTEATLSHDELIFSVGDQIEIFHKEPTRLRVNPPYPDIIDSKNLTNVLTIAEYGLINTDLQGDPGQALLTRLDNAALRLRGFYQAYHAAYSPFKDDIYLAIQAFDSPEREQLLVAYKDCLPADNTPPSDNVGYKFMFIGAGFNDRQFLGGILDLVKKTLTIKISAGIPHSYFSSVYASIAYEDADGNSLYREAVIGNQNQQARSIVLPLSGYGGEVIRLFHEEPDDRLIITNEMQHVRLAERGKQQHYRITTVGLERIDI
>NZ_CP006569.1|WP_025421458.1|1425051_1426461_+|glutamate--tRNA-ligase
MKIKTRFAPSPTGYLHVGGARTALYSWLFARNLGGEFVLRIEDTDLERSTQPAIEAIMDGMNWLNLDWDEGPYFQTKRFDRYNAVIDDMLSHGSAYKCYCSKERLETLREAQMARGEKPRYDGRCRDSHDHHAADEPCVVRFSNPQDGSVVFNDLIRGPIEFSNQELDDLIIRRTDGSPTYNFCVVVDDYDMAITHVIRGEDHINNTPRQINILKALGAPVPDYAHVSMILGDDGKKLSKRHGAVGVMQYRDDGFLPEALLNYLVRLGWSHGDQEIFSVDDMKRLFSLDAVSKSASAFNTEKLLWLNHHYINHLPADYVATHLVWHIEQQGIDTRTGPQLAELVKLLGERCKTLKEIAASCRYFYEDFSEFDVDAAKKHLRPVAAPALQAVRAKLAALDAWTPASVHAAIEQTAEELQVGMGKVGMPLRVAVTGAGQSPALDVTVHAIGQSRSLARIDLALDFIAQRAQ
>NZ_CP006569.1|WP_025421459.1|1426928_1428113_-|NupC/NupG-family-nucleoside-CNT-transporter
MSRTLHFVLALAVVAILAMLVSRDRKSIRVRFIIQLLAIEILLAYFFLNSHIGLGFVQGFSALFDKLLGFAAEGTGFVFGNMNKQGLAFFFLNVLCPIVFISALIGILQHIRVLPFVIRIIGTVLSKINGMGKLESFNAVSSLILGQSENFIAYKDILGKMSERRMYTMAATAMSTVSMSIVGAYMTMLAPKYVVAALVLNMFSTFIVLSLLNPYRVEKEEDLQMSHLHEGQSFFEMLGEYILAGFKVAIIVAAMLIGFIALISAVNALFSLLFGISFQGILGYIFFPFAWVMGVPAHEALQVGSIMATKLVSNEFVAMIDLQKVAGELSPRSVGILSVFLVSFANFSSIGIVAGAIKGLNEHQGNVVSRYGLKLVYGSTLVSVLSAAIAGLVI
>NZ_CP006569.1|WP_025421460.1|1428489_1429728_+|Mn(2+)-uptake-NRAMP-transporter-MntH
MVDSRAADNANRAARKVKLSLLGPAFIAAIGYIDPGNFATNIQAGASFGYRLLWVVVWANIMAMLIQLLSAKLGIATGKNLAEHIRDRFPRPAVWAYWVQAEIIAMATDLAEFIGAAIGFKMLLGVTLLQGAIITGVVTFLILMLQNRGQKPLEVVIGGLLLFVAAAYIAELFYSRPVLSELGAGMLWPTLPNGEAVFLAAGVLGATIMPHVIYLHSSLTQNSREGSRAERYSSTKLDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGIADLDEAYLTLSPLLNHTAATVFGLSLVAAGLSSTVVGTMAGQVVMQGFVHFHIPLLLRRVITMLPSFVVILLGLDPTRILVLSQVLLSFGIALALVPLLVFTGNRQLMNELVNRPLINTLGWLIVAVVVTLNIYLLIGTAMGH
>NZ_CP006569.1|WP_025421461.1|1429729_1430719_-|L-glyceraldehyde-3-phosphate-reductase
MVYQASPSRYETMEYHRCGNSGLKLPAVSLGLWHNFGDATLLDTSRQMLRHAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFTPYRDELVISTKAGYTMWQGPYGDWGSKKYLVASLNQSLRRLGLDYVDIFYHHRPDPDTPLEETMAALDLLVRQGKALYIGLSNYPAPLAERAFNLLRELGTPCLIHQPKYSMFERWVEPQLLSSLASHGVGAIAFSPLAGGVLTDRYIHGIPEDSRAASQSVFLSGAQLTEEKMAKVRRLNAVAAARGQKLAQMALAWVLRGDRVTSVLIGASKTAQIDDAVAMLSNRQFSERELAEIEAILA
>NZ_CP006569.1|WP_025421462.1|1430893_1431586_+|aspartate/glutamate-racemase-family-protein
MKTLGLLGGMSWESTVPYYRLINQGVSERLGGLHSASLVLASVDFADIARMQSAGAWQEAGEVLSERAQALRQAGAQGIVLCTNTMHKVADIITQRCSLPLLHIADATAVRLHRAGVRRVGLLGTRFTMEEAFYRDRLSAPHGLEVVVPGPDERQRVHDIIFTELCLGILRDDSRRALSQIIAGLQFEGVEGIVLGCTEIGLLLSQDQVSVPLFDTTAIHAAAAVEFALG

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Crispr_ID: NZ_CP006569_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006569_3

1432780-1432899

Orphan

Consensus_repeat	Method
CAGCGCAGGCCGGCGTCCTTCGCCGCGTTTGGCACCACGGGCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006569_3

>merge|NZ_CP006569|3|1432780-1432899|CRISPRCasFinder
CAGCGCAGGCCGGCGTCCTTCGCCGCGTTTGGCACCACGGGCGGCGAAAATTTACCTCGTGCGTTTTCTCTGCCACAGCGCAGGCCGGCGTCCTTCGCCGCGTTTGGCACCATGGGCGGC

>NZ_CP006569|3|3|1432780-1432899|CRISPRCasFinder
CAGCGCAGGCCGGCGTCCTTCGCCGCGTTTGGCACCACGGGCGGC	GAAAATTTACCTCGTGCGTTTTCTCTGCCA
CAGCGCAGGCCGGCGTCCTTCGCCGCGTTTGGCACCATGGGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006569.1\|WP_025421468.1\|1437762_1438080_-\|quaternary-ammonium-compound-efflux-SMR-transporter-SugE	unknown	unknown	gnl\|CDD\|171110
NZ_CP006569.1\|WP_025421466.1\|1436032_1437277_+\|alanine-transaminase	unknown	unknown	gnl\|CDD\|181268
NZ_CP006569.1\|WP_025421472.1\|1440695_1441409_-\|PAS-and-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|197715
NZ_CP006569.1\|WP_025421461.1\|1429729_1430719_-\|L-glyceraldehyde-3-phosphate-reductase	unknown	unknown	gnl\|CDD\|381377
NZ_CP006569.1\|WP_158500149.1\|1439417_1439558_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006569.1\|WP_148296348.1\|1437378_1437453_-\|membrane-protein-YpdK	unknown	unknown	unknown
NZ_CP006569.1\|WP_025421473.1\|1442556_1442910_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006569.1\|WP_025421455.1\|1417673_1418909_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|185090
NZ_CP006569.1\|WP_025421463.1\|1431752_1432718_+\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NZ_CP006569.1\|WP_025421465.1\|1433807_1435484_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP006569.1\|WP_025421462.1\|1430893_1431586_+\|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl\|CDD\|224707
NZ_CP006569.1\|WP_158500150.1\|1440115_1440292_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006569.1\|WP_025421457.1\|1420794_1423362_-\|peptidase-M60	unknown	unknown	gnl\|CDD\|367432
NZ_CP006569.1\|WP_025421464.1\|1433041_1433770_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP006569.1\|WP_071882005.1\|1438641_1438830_-\|general-stress-protein	unknown	unknown	unknown
NZ_CP006569.1\|WP_025421456.1\|1418921_1420442_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP006569.1\|WP_025421458.1\|1425051_1426461_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP006569.1\|WP_025421459.1\|1426928_1428113_-\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NZ_CP006569.1\|WP_038668317.1\|1416194_1417652_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NZ_CP006569.1\|WP_025421460.1\|1428489_1429728_+\|Mn(2+)-uptake-NRAMP-transporter-MntH	unknown	unknown	gnl\|CDD\|234815

Protein	Function_ID	Function_description	E-value
NZ_CP006569.1\|WP_025421468.1\|1437762_1438080_-\|quaternary-ammonium-compound-efflux-SMR-transporter-SugE	gnl\|CDD\|171110	PRK11431, PRK11431, quaternary ammonium compound efflux SMR transporter SugE.	3.35094e-35
NZ_CP006569.1\|WP_025421466.1\|1436032_1437277_+\|alanine-transaminase	gnl\|CDD\|181268	PRK08175, PRK08175, aminotransferase; Validated.	0
NZ_CP006569.1\|WP_025421472.1\|1440695_1441409_-\|PAS-and-helix-turn-helix-domain-containing-protein	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	2.51697e-08
NZ_CP006569.1\|WP_025421461.1\|1429729_1430719_-\|L-glyceraldehyde-3-phosphate-reductase	gnl\|CDD\|381377	cd19151, AKR_AKR14A2, Salmonella enterica aldo-keto reductase (AKR) and similar protein. Salmonella enterica AKR is a founding member of aldo-keto reductase family 14 member A2 (AKR14A2).	0
NZ_CP006569.1\|WP_025421455.1\|1417673_1418909_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|185090	PRK15136, PRK15136, multidrug efflux MFS transporter periplasmic adaptor subunit EmrA.	1.72474e-154
NZ_CP006569.1\|WP_025421463.1\|1431752_1432718_+\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	0
NZ_CP006569.1\|WP_025421465.1\|1433807_1435484_-\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	0
NZ_CP006569.1\|WP_025421462.1\|1430893_1431586_+\|aspartate/glutamate-racemase-family-protein	gnl\|CDD\|224707	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane].	4.52123e-115
NZ_CP006569.1\|WP_025421457.1\|1420794_1423362_-\|peptidase-M60	gnl\|CDD\|367432	pfam03272, Mucin_bdg, Putative mucin or carbohydrate-binding module. This family is the putative binding domain for the substrates of enhancin, and other similar metallopeptidases. This is not the enzymically active, peptidase, part of the proteins - see pfam13402.	9.6649e-43
NZ_CP006569.1\|WP_025421464.1\|1433041_1433770_-\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	6.78046e-65
NZ_CP006569.1\|WP_025421456.1\|1418921_1420442_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.29054e-150
NZ_CP006569.1\|WP_025421458.1\|1425051_1426461_+\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP006569.1\|WP_025421459.1\|1426928_1428113_-\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	2.226e-154
NZ_CP006569.1\|WP_038668317.1\|1416194_1417652_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	1.44132e-103
NZ_CP006569.1\|WP_025421460.1\|1428489_1429728_+\|Mn(2+)-uptake-NRAMP-transporter-MntH	gnl\|CDD\|234815	PRK00701, PRK00701, divalent metal cation transporter MntH.	0

>NZ_CP006569.1|WP_025421463.1|1431752_1432718_+|glucokinase
MTNYVLVGDVGGTNARLALCDVDTGEISHIHTYSGDDYDTLERVIRHYLTGQNVAVKEACIAIACPITDDWVEMTNHSWAFSINAMKASLALEQLEIINDFTAVSMAIPMLTEKDVIQFGGGQAIAGKPIAIYGAGTGLGVSHLIQAEKRWISLPGEGGHVDFAPNSEEEDNILSVLRAELGHVSAERVLSGPGLVNLYRAIVKADGRLPENLLPKQVTEQALADSCIDSRRALSLFCVLMGRFGGNLALNLGTFGGVYIAGGIVPRFLDFFRASGFRAAFEDKGRFKDYLLDIPVYLIRHEQPGLLGAGAHMRQLMGHQL
>NZ_CP006569.1|WP_025421462.1|1430893_1431586_+|aspartate/glutamate-racemase-family-protein
MKTLGLLGGMSWESTVPYYRLINQGVSERLGGLHSASLVLASVDFADIARMQSAGAWQEAGEVLSERAQALRQAGAQGIVLCTNTMHKVADIITQRCSLPLLHIADATAVRLHRAGVRRVGLLGTRFTMEEAFYRDRLSAPHGLEVVVPGPDERQRVHDIIFTELCLGILRDDSRRALSQIIAGLQFEGVEGIVLGCTEIGLLLSQDQVSVPLFDTTAIHAAAAVEFALG
>NZ_CP006569.1|WP_025421461.1|1429729_1430719_-|L-glyceraldehyde-3-phosphate-reductase
MVYQASPSRYETMEYHRCGNSGLKLPAVSLGLWHNFGDATLLDTSRQMLRHAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFTPYRDELVISTKAGYTMWQGPYGDWGSKKYLVASLNQSLRRLGLDYVDIFYHHRPDPDTPLEETMAALDLLVRQGKALYIGLSNYPAPLAERAFNLLRELGTPCLIHQPKYSMFERWVEPQLLSSLASHGVGAIAFSPLAGGVLTDRYIHGIPEDSRAASQSVFLSGAQLTEEKMAKVRRLNAVAAARGQKLAQMALAWVLRGDRVTSVLIGASKTAQIDDAVAMLSNRQFSERELAEIEAILA
>NZ_CP006569.1|WP_025421460.1|1428489_1429728_+|Mn(2+)-uptake-NRAMP-transporter-MntH
MVDSRAADNANRAARKVKLSLLGPAFIAAIGYIDPGNFATNIQAGASFGYRLLWVVVWANIMAMLIQLLSAKLGIATGKNLAEHIRDRFPRPAVWAYWVQAEIIAMATDLAEFIGAAIGFKMLLGVTLLQGAIITGVVTFLILMLQNRGQKPLEVVIGGLLLFVAAAYIAELFYSRPVLSELGAGMLWPTLPNGEAVFLAAGVLGATIMPHVIYLHSSLTQNSREGSRAERYSSTKLDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGIADLDEAYLTLSPLLNHTAATVFGLSLVAAGLSSTVVGTMAGQVVMQGFVHFHIPLLLRRVITMLPSFVVILLGLDPTRILVLSQVLLSFGIALALVPLLVFTGNRQLMNELVNRPLINTLGWLIVAVVVTLNIYLLIGTAMGH
>NZ_CP006569.1|WP_025421459.1|1426928_1428113_-|NupC/NupG-family-nucleoside-CNT-transporter
MSRTLHFVLALAVVAILAMLVSRDRKSIRVRFIIQLLAIEILLAYFFLNSHIGLGFVQGFSALFDKLLGFAAEGTGFVFGNMNKQGLAFFFLNVLCPIVFISALIGILQHIRVLPFVIRIIGTVLSKINGMGKLESFNAVSSLILGQSENFIAYKDILGKMSERRMYTMAATAMSTVSMSIVGAYMTMLAPKYVVAALVLNMFSTFIVLSLLNPYRVEKEEDLQMSHLHEGQSFFEMLGEYILAGFKVAIIVAAMLIGFIALISAVNALFSLLFGISFQGILGYIFFPFAWVMGVPAHEALQVGSIMATKLVSNEFVAMIDLQKVAGELSPRSVGILSVFLVSFANFSSIGIVAGAIKGLNEHQGNVVSRYGLKLVYGSTLVSVLSAAIAGLVI
>NZ_CP006569.1|WP_025421458.1|1425051_1426461_+|glutamate--tRNA-ligase
MKIKTRFAPSPTGYLHVGGARTALYSWLFARNLGGEFVLRIEDTDLERSTQPAIEAIMDGMNWLNLDWDEGPYFQTKRFDRYNAVIDDMLSHGSAYKCYCSKERLETLREAQMARGEKPRYDGRCRDSHDHHAADEPCVVRFSNPQDGSVVFNDLIRGPIEFSNQELDDLIIRRTDGSPTYNFCVVVDDYDMAITHVIRGEDHINNTPRQINILKALGAPVPDYAHVSMILGDDGKKLSKRHGAVGVMQYRDDGFLPEALLNYLVRLGWSHGDQEIFSVDDMKRLFSLDAVSKSASAFNTEKLLWLNHHYINHLPADYVATHLVWHIEQQGIDTRTGPQLAELVKLLGERCKTLKEIAASCRYFYEDFSEFDVDAAKKHLRPVAAPALQAVRAKLAALDAWTPASVHAAIEQTAEELQVGMGKVGMPLRVAVTGAGQSPALDVTVHAIGQSRSLARIDLALDFIAQRAQ
>NZ_CP006569.1|WP_025421457.1|1420794_1423362_-|peptidase-M60
MHSVTQLKSIYTLTRPDWLDAAGMSKGIHHDHQHLGIILGANQTLRVRQVDTAFSSMLTLRLLNDGSKTEASYNVGRDWVEASVNAASVPFIETPYVTGAPVVEFEYPETSKILPVYRKGENEAAFFERWNSQDAELAIVDSGYALILVPKVSKPALQASGNVGSIDALITYYEGIFSFYNALCGLSFEAEHDSDWNITNRYLMKADKDDSNGGYYGGNWTAESSASVSNFWLTPQASNWGSLHEIAHGYEGHFMTGKHFSVGEVWNNIYAASYQDMMLGERKYQDGWLYNYGNKAKVEKTIFQLIAKGKPLNQWDLRSKLYFFMLMVDKAGKNAFTHFNQQYRKSCNTSDFIPYEHSLLDLLSESFAVAGEQVDVTPFIQLTGGDVTQPQRDRNKFSHAKAVYPLYQLVDKPQLEAVKNQLKLDSTLRLVDATQLKATGLKGNVSLRFNIDDFAQIYGKDLILLEGARYAYKIGIDSPTLTLRELPIGVYTLRLPTGKDRKYQPTTDYLTVKQGDNAAEITFVRKHVSPIISQEINFLGISDELFATLLVDRVQGKLIIDVFTTTPHYYFPGVTYAKIVVRNPQGTITFTKEIPGTEATLSHDELIFSVGDQIEIFHKEPTRLRVNPPYPDIIDSKNLTNVLTIAEYGLINTDLQGDPGQALLTRLDNAALRLRGFYQAYHAAYSPFKDDIYLAIQAFDSPEREQLLVAYKDCLPADNTPPSDNVGYKFMFIGAGFNDRQFLGGILDLVKKTLTIKISAGIPHSYFSSVYASIAYEDADGNSLYREAVIGNQNQQARSIVLPLSGYGGEVIRLFHEEPDDRLIITNEMQHVRLAERGKQQHYRITTVGLERIDI
>NZ_CP006569.1|WP_025421456.1|1418921_1420442_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MSEQGFRPPSLVLATIGLSLATFMQVLDTTIANVALPTISGNLGVSSEQGTWVITSFAVSNAIALPLTGWMSRRMGQTKLFLASVLLFIITSFLCGIAQNMTQLVIFRALQGFFAGPLYPMAQTLLLSIYPAAKRGMALSLLAMVTVVAPIVGPLAGGWITDNYTWPWIFFINVPIGVFAAMLVLAQLKDRPETTVTQPIDYVGLALLVLGVGLLQVVLDKGNDLDWFESVFIIVGTLISVISLVALVIWELTDKHPIIDLRLFKYRNFSFGTLALVLGYSGFFGINLLLPQWLQTQLGYTPVWAGLAAAPIGILPVFLSPLVGRYAHKFDLRLLAGGSFLVIGISCFMRSDFTTDVDYYHIAMIQGFMGIGVALFFMPTTSILLSSLPPKDIAEGSGLATFLRVLGGSFASSLTTWIWHRREIFHHAHLTEDITAYSPATQSYIEGLGGNSQSTMAQLDKLVEGQAYMLSTVDYFTLLGWIFFALILVIWLAKPPFSPQGGGGGH
>NZ_CP006569.1|WP_025421455.1|1417673_1418909_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MAESQTTPQQNAANTRADNAGAAPARNKGKRKMMLLLLLAIVVICLVAFGLYYWLHGRFYESTDDAYVTGNLVQITPQVAGTVTTIAADDGDYVKQGQLLVRLDPSDTIVAQESAEANLARVVRQVRGMYSNVDNYKAMVAARKVELQRARTDYQRRANLARDGAISQEELSHARDALTSAETSLTSAQQQLNTTFALVDDTTIASHPDVKDAAASLRSAYLNHVRSTLVAPVSGFVAKRSVQVGSRVQPGAALMAVVPLDDVWIDANFKETQLLSMRIGQPVDINADLYGGDITYHGKVESLGVGTGSAFSLLPAQNASGNWIKIVQRLPVRIRLDPDNLDHHPLRVGLSTNVTVDMHNQDGPVLAPRPLDKPRYNTDVYEHQLREADSLVTRIIHQNGVQARDAGQGQQ
>NZ_CP006569.1|WP_038668317.1|1416194_1417652_+|efflux-transporter-outer-membrane-subunit
MPLRIRLLPLLSAMMLAGCALPYGLHTEGRALDANTLAGQQTFSSAKLSSASWPTADWWNSLGDSNLDALIRRALQNSPDLQVADARARQASASVMAAEAARMPTLDASAGITRARNARVDDYNGQGKQYGTVRTLSADFNYTFDLWGGQRAAWEAAVGRANAGEVDRQAARLTLAANVARAYNNYGEAHAMLDLAQQDLNRTHTMLGLAQRRFTAGLDSKFQYQQTESLEAAAQATLTAARQQVTAAGIRLAVLLGQGPDAARTLPRPQLIAPAAVSLPATLPAELLGRRPDLIAARWRVEAAAKDIKVSRTAFYPNLNLSAAAGTKSLLGDAFFGAPSRFFTIGPALSLPIFDGGRLRADLAGSNADYDLAVAQYNQSLVSALGDIGDAITRLASLETQVQQQTRARDIARASWDNAMQRYSAGIGNYLDALSVEQQLIQAERDLASINAQRTDTAIVLMQALGGGFQTPASLPAAPVVAQNN
>NZ_CP006569.1|WP_025421464.1|1433041_1433770_-|response-regulator-transcription-factor
MKAIIVEDEFLAQEELRYLVEKHSHLDIVATFDDGLDVLRYLQTNEVDVVFLDINIPSLDGVLLAQSISKFSRRPAIIFITAYKEHAVEAFELEAFDYILKPYHEQRIVTMLQKLEANRPLTQAALSTPGARSSHTVNLIKDERIIVTDIHNLYYAVAQEKVTRVYTRREIYTMPMAITEFCARLPDDVFFRCHRSYAVNRDKIREIVPWFNNTYLLRLNDLEFEVPVSRGKVKAFRLMMGL
>NZ_CP006569.1|WP_025421465.1|1433807_1435484_-|sensor-histidine-kinase
MNEIFEMLLAVYERAALMLICLFLLTRTRRFRQLLQTEEHSRQEQVVVTAIFCLFAIFSNYSGIHVEGSLINVRVIAVMSGGILFGPWVGIITGAVAGLHRFAIDIHGPTSVPCLISSVVAGVVSGLIHLRVTKERRWSLGILGGMLCESLTMLLVVVWAEPTSLGLDIVAKIAVPMILGAVSIGLIVLLVQGVEDEKEVIAARQAKLALDIANKTLPYFRHINSESLTHICDIIRTDIKADAVAITNQQNILAYVGIGAEHYNIGHEIISEMTRESIESGKITIKNNDEADRTPQIHSLIIIPLWEKGVVTGSLKIYYCHAHQITYSLKVMAVGLSQIISTQIEVSRIEQLREMADRAELRALQSKINPHFLFNALNAISSSIRGKPDTARQLVINLSRYLRYNLELNDEHIDIKKELYQIQDYIAIEQARFGSKLTVIYDIDEELSFTLPSLLIQPLVENAIVHGIQPCRGNGVVVIAIKAEQERIRISVTDTGSGISEAVIEQVRRNEQPSRRIGLLNVHQRVALLYGEGLHIRRREPGTEIWFYLTTDGRKQAA
>NZ_CP006569.1|WP_025421466.1|1436032_1437277_+|alanine-transaminase
MAEFGSARRFTRIERLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGPTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISRWYADRYAVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFRELERAIRESIPTPKMMILGFPSNPTAQCVELDFFERVVALARQYNVLVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNPALVNALARIKSYHDYGTFTPLQVAAIAALEGDQECVRAIAEQYRQRRNVLVRGLHEAGWMVENPKASMYVWAKIPDHYAALGSLEFAKKLLAEAKVCVSPGIGFGDYGDTHVRFALIENQDRIRQAVRGIKAMFRADGVLKAQAVKQPGAVKTG
>NZ_CP006569.1|WP_148296348.1|1437378_1437453_-|membrane-protein-YpdK
MRYFVMGISFMLCLWVGTFFLLLE
>NZ_CP006569.1|WP_025421468.1|1437762_1438080_-|quaternary-ammonium-compound-efflux-SMR-transporter-SugE
MSWFILFIAGLFEVIWAIGLKYTQGFTRPFPSLIVIGALCISFLLLSWAMKTLPAGTAYAVWSGIGAVGAALVGMSLLGEAVTAGRVISLCLLIAGIAGLKYFTP
>NZ_CP006569.1|WP_071882005.1|1438641_1438830_-|general-stress-protein
MAEHRGGSGNFAEDKQKASEAGRKGGQSSSSSSGGNFKNDPQKASEAGKKGGQHSHSGGRNS
>NZ_CP006569.1|WP_158500149.1|1439417_1439558_-|hypothetical-protein
MKAYWLLLTVLLLTGCSGMGGILFNLPNAGDVCPHGRDVFTNQCHD
>NZ_CP006569.1|WP_158500150.1|1440115_1440292_-|hypothetical-protein
MKILRATGQTSLLFDNGTLAMNFDELSAIGFFGPHGSDPFFESYQFSGDDDATDGRDV
>NZ_CP006569.1|WP_025421472.1|1440695_1441409_-|PAS-and-helix-turn-helix-domain-containing-protein
MVQKSDANRKKLILDSLNTIPLVSFMERCHVPWGIRDSTSHNLYTNQAGMAFLNIPDGFDFAGRSDDECPCPWSELAPEFTAHDRQAETSPAGAEIIATSYYGRDAQLAPYHIIKFPLFDKRGEILGNIWYAQKFKFISLGELHNPIKPSIITLTPPVTLFTEKEHRIIFYAIQKMSVKKIAAKLFVSHRTIENSLCKIYRKVQATSLNGLIEYCHETGLNCYVPKKLLKPGVNFLW
>NZ_CP006569.1|WP_025421473.1|1442556_1442910_-|hypothetical-protein
MIKTAYFLILLYFFSLSAHAISKYTLLCPGRNEMTVMHTHYRITTLMWDDEFFVAPLPNVLEDSYGKKRIYRFLNHDTLIADSSANFYYFIFHNGKEVRCTKGPDLSVAPLALEIVH

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Crispr_ID: NZ_CP006569_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006569_4

1738324-1738428

Orphan

Consensus_repeat	Method
GGCTGCCGAACGCGCTTGCGCGGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006569_4

>merge|NZ_CP006569|4|1738324-1738428|CRISPRCasFinder
GGCTGCCGAACGCGCTTGCGCGGGTTGGGCCACCGCCGTGGCCCTGGGGGCCGTTAGCGGCATAGGTAGGTGGCTGCCCGGGGTGCCGAACGCGCTTGCGCGGGT

>NZ_CP006569|4|4|1738324-1738428|CRISPRCasFinder
GGCTGCCGAACGCGCTTGCGCGGGT	TGGGCCACCGCCGTGGCCCTGGGGGCCGTTAGCGGCATAGGTAGGTGGCTGCCCG
GGGTGCCGAACGCGCTTGCGCGGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006569.1\|WP_025421721.1\|1748875_1749934_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NZ_CP006569.1\|WP_025421712.1\|1738618_1739296_-\|fructose-6-phosphate-aldolase	unknown	unknown	gnl\|CDD\|183653
NZ_CP006569.1\|WP_148296254.1\|1746304_1747060_-\|UTRA-domain-containing-protein	unknown	unknown	gnl\|CDD\|225099
NZ_CP006569.1\|WP_025421703.1\|1730220_1731132_-\|pyrroloquinoline-quinone-biosynthesis-protein-PqqB	unknown	unknown	gnl\|CDD\|235361
NZ_CP006569.1\|WP_025421705.1\|1733014_1733563_+\|PTS-glucitol/sorbitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|129901
NZ_CP006569.1\|WP_071882068.1\|1731189_1731264_-\|pyrroloquinoline-quinone-precursor-peptide-PqqA	unknown	unknown	gnl\|CDD\|178960
NZ_CP006569.1\|WP_025421715.1\|1743663_1744536_-\|transcriptional-regulator-LrhA	unknown	unknown	gnl\|CDD\|237907
NZ_CP006569.1\|WP_025421704.1\|1731374_1732442_-\|membrane-dipeptidase	unknown	unknown	gnl\|CDD\|366534
NZ_CP006569.1\|WP_025421707.1\|1734888_1735251_+\|PTS-glucitol/sorbitol-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|182419
NZ_CP006569.1\|WP_025421713.1\|1740406_1741936_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006569.1\|WP_025421719.1\|1747263_1748082_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_CP006569.1\|WP_025421710.1\|1736561_1737335_+\|DNA-binding-transcriptional-repressor	unknown	unknown	gnl\|CDD\|182457
NZ_CP006569.1\|WP_025421711.1\|1737327_1738296_+\|arabinose-5-phosphate-isomerase-GutQ	unknown	unknown	gnl\|CDD\|183186
NZ_CP006569.1\|WP_025421716.1\|1744936_1745308_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP006569.1\|WP_025421708.1\|1735274_1736054_+\|sorbitol-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|183489
NZ_CP006569.1\|WP_025421709.1\|1736104_1736467_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182322
NZ_CP006569.1\|WP_025421720.1\|1748078_1748840_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223673
NZ_CP006569.1\|WP_025421702.1\|1729449_1730211_-\|pyrroloquinoline-quinone-synthase-PqqC	unknown	unknown	gnl\|CDD\|235353
NZ_CP006569.1\|WP_025421714.1\|1742163_1743294_+\|lactonase-family-protein	unknown	unknown	gnl\|CDD\|378416
NZ_CP006569.1\|WP_025421717.1\|1745417_1746149_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235816

Protein	Function_ID	Function_description	E-value
NZ_CP006569.1\|WP_025421721.1\|1748875_1749934_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	1.38188e-14
NZ_CP006569.1\|WP_025421712.1\|1738618_1739296_-\|fructose-6-phosphate-aldolase	gnl\|CDD\|183653	PRK12653, PRK12653, fructose-6-phosphate aldolase; Reviewed.	8.70443e-105
NZ_CP006569.1\|WP_148296254.1\|1746304_1747060_-\|UTRA-domain-containing-protein	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	9.76877e-48
NZ_CP006569.1\|WP_025421703.1\|1730220_1731132_-\|pyrroloquinoline-quinone-biosynthesis-protein-PqqB	gnl\|CDD\|235361	PRK05184, PRK05184, pyrroloquinoline quinone biosynthesis protein PqqB; Provisional.	0
NZ_CP006569.1\|WP_025421705.1\|1733014_1733563_+\|PTS-glucitol/sorbitol-transporter-subunit-IIC	gnl\|CDD\|129901	TIGR00821, Glucitol/sorbitol_permease_IIC_component, PTS system, glucitol/sorbitol-specific, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Gut family consists only of glucitol-specific transporters, but these occur both in Gram-negative and Gram-positive bacteria.E. coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIC component. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS].	6.44005e-117
NZ_CP006569.1\|WP_071882068.1\|1731189_1731264_-\|pyrroloquinoline-quinone-precursor-peptide-PqqA	gnl\|CDD\|178960	PRK00284, pqqA, pyrroloquinoline quinone precursor peptide PqqA.	2.46771e-07
NZ_CP006569.1\|WP_025421715.1\|1743663_1744536_-\|transcriptional-regulator-LrhA	gnl\|CDD\|237907	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional.	1.4728e-115
NZ_CP006569.1\|WP_025421704.1\|1731374_1732442_-\|membrane-dipeptidase	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	5.37794e-114
NZ_CP006569.1\|WP_025421707.1\|1734888_1735251_+\|PTS-glucitol/sorbitol-transporter-subunit-IIA	gnl\|CDD\|182419	PRK10377, PRK10377, PTS glucitol/sorbitol transporter subunit IIA.	6.02505e-62
NZ_CP006569.1\|WP_025421719.1\|1747263_1748082_+\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	2.91365e-50
NZ_CP006569.1\|WP_025421710.1\|1736561_1737335_+\|DNA-binding-transcriptional-repressor	gnl\|CDD\|182457	PRK10434, srlR, DNA-binding transcriptional repressor.	1.81663e-170
NZ_CP006569.1\|WP_025421711.1\|1737327_1738296_+\|arabinose-5-phosphate-isomerase-GutQ	gnl\|CDD\|183186	PRK11543, gutQ, arabinose-5-phosphate isomerase GutQ.	0
NZ_CP006569.1\|WP_025421716.1\|1744936_1745308_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	3.48482e-31
NZ_CP006569.1\|WP_025421708.1\|1735274_1736054_+\|sorbitol-6-phosphate-dehydrogenase	gnl\|CDD\|183489	PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional.	8.30485e-180
NZ_CP006569.1\|WP_025421709.1\|1736104_1736467_+\|hypothetical-protein	gnl\|CDD\|182322	PRK10234, PRK10234, transcriptional regulator GutM.	7.5886e-47
NZ_CP006569.1\|WP_025421720.1\|1748078_1748840_+\|ABC-transporter-permease-subunit	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	4.67537e-35
NZ_CP006569.1\|WP_025421702.1\|1729449_1730211_-\|pyrroloquinoline-quinone-synthase-PqqC	gnl\|CDD\|235353	PRK05157, PRK05157, pyrroloquinoline quinone biosynthesis protein PqqC; Provisional.	7.26806e-163
NZ_CP006569.1\|WP_025421714.1\|1742163_1743294_+\|lactonase-family-protein	gnl\|CDD\|378416	pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller. This entry contains bacterial 6-phosphogluconolactonases (6PGL)YbhE-type (EC:3.1.1.31) which hydrolyze 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonising enzyme carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and muconate cycloisomerase (EC:5.5.1.1), which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold.	4.72554e-70
NZ_CP006569.1\|WP_025421717.1\|1745417_1746149_+\|SDR-family-oxidoreductase	gnl\|CDD\|235816	PRK06500, PRK06500, SDR family oxidoreductase.	1.67324e-80

>NZ_CP006569.1|WP_025421711.1|1737327_1738296_+|arabinose-5-phosphate-isomerase-GutQ
MSDERLLAFARETLDIEISEVQRMRDRLDGSIVTACRLLLACEGKVIVAGMGKSGHIGKKIAASLASTGTPAFFVHPAEALHGDLGMIDARDVVLFISYSGRARELDTLLPLLAESQIPVIALTGNLTSPLAQGAACVLNISVEREACPMGLAPTSSAVNTLMMGDALAMALMRQRDFGPEQFARSHPGGSLGAQLLNRVHHVMRRGERIPRIAVQGTVMDAMFELSRTGLGLTAVCGPADRVVGVFTDGDLRRWLVKGRALTAPIADAMTTPGYRLPLDWRAGAALEALHQQQITAAPVVDADGDLVGAINMHDLHQAGIG
>NZ_CP006569.1|WP_025421710.1|1736561_1737335_+|DNA-binding-transcriptional-repressor
MKPRQRQAAIIDYLQLHGKTSVEDLAGHFALTGTTIRKDLTQLEEEGAVIRTYGGVVLSREEGDQPIDRKTHINTAKKRQIARRAALLIKDGESLIFDAGSTVLQMVPWLAQFNNITVMTNSLSIVNELVELDNDQVILMPGGTYRKNSASFHGTLAEAAFSHFNFDKLFIGADGVDLTAGVTTFNELHAVSQAMCRAAQQRILLVDSSKFGRKSPNIVCALSAVDILITDNGIPPATLQALRDSGIEVVVVDNEDE
>NZ_CP006569.1|WP_025421709.1|1736104_1736467_+|hypothetical-protein
MSSSSVLIMFALLAWSGQILLGWRQVRRFNQALMQLQRLGCVGVGRSSGRFRSRVVMALAFDGQGSVRGGFVLRGMTVFARPQPLTQLIGLQREQLNPIVIYPKEPACQTALALAIEPKS
>NZ_CP006569.1|WP_025421708.1|1735274_1736054_+|sorbitol-6-phosphate-dehydrogenase
MGQVAVVVGGGQTLGAFLSQGLAHAGYRVAVADLHGEHARQVAEELDEQGTGEVARGWQVDATNEQSVISLAQQVDKAWGRVDLLVYSAGVAKAAPITQFRLNDFDMSLQVNLVGYFLCAREFSRLMIRDKTAGRIIQINSKSGKVGSKHNAGYSAAKFGGVGLTQSLALDLAEHGITVHSLMLGNLLKSPMFQSLLPQYAEKLGIPVEQVEQYYIDKVPLKRGCDYQDVLNTLLFYASDKASYCTGQSINITGGQVMF
>NZ_CP006569.1|WP_025421707.1|1734888_1735251_+|PTS-glucitol/sorbitol-transporter-subunit-IIA
MKTVYHTTFTRIGENARESLAENMVILFREGAPEDIEAFCFIHRHGETVGELRAGGAMILGDRTFPITAVGAVATQNLRELGHITVRFDGAGQAEFPGSVHVAGLIPSDIAIGSELTIQA
>NZ_CP006569.1|WP_025421705.1|1733014_1733563_+|PTS-glucitol/sorbitol-transporter-subunit-IIC
MIDVITHGAEWFIGLFQKGGTVFVGMVTGILPLLISLLVIMNALIVFVGQARIERLAQRCAGNPLSRYLLLPLIGTFVFCNPMTLSLGRFMPEKYKPSYYAAASYSCHSMNGLFPHINPGELFVYLGIANGLTTLGLPLGPLAVSYLLVGLCSNFFRGWITDLTTSIFERKMGIQLDRQVRL
>NZ_CP006569.1|WP_025421704.1|1731374_1732442_-|membrane-dipeptidase
MTTSISPSLPMFDGHNDALLRLWLNGAGDPAAAFVQGTPDGHLDLPRCLRGGFAGGLFAAFVPPPSYLARHAPAQALPERSDDLPTPAESRAITLAQLAILRRIEVVSGARARLCRSVADIRRCMAQGTIAMVMHLEGADALDTSLSLLEEWHTAGLRSLGPVWNRRNAFGTGIQGRFPEPPAAGAGLTPAGKRLIQRCLQLRIMVDVSHMDATGFWQTAELGGAPLVATHSNAYALCPQPRNLTDAQLAAIRQSGGFVGVNFGTAFLRADGKRTPDTGVDEIVRHIDYLLHKVGEDGVGLGSDFDGVNVPGEMADVAGLPLLAQALARQGYDRALQEKIAYGNWLRVLERTWKC
>NZ_CP006569.1|WP_071882068.1|1731189_1731264_-|pyrroloquinoline-quinone-precursor-peptide-PqqA
MKWTKPDFIDLRIGLEVTLYMSNR
>NZ_CP006569.1|WP_025421703.1|1730220_1731132_-|pyrroloquinoline-quinone-biosynthesis-protein-PqqB
MQIRILGTAAGGGFPQWNCNCRNCRRQRSGELNVPSRTQSSIAVSDDGRDWVVCNVSPDIAQQIAANPALRNDSVLRGTAIGAIILTDSQIDHCAGLLSLREGCPHDVWCTPEVYDDLTEGFPVFTLLQHWNGGLRHHALTPEQPFTVKVCPALRFTAIPLLSNAPPYSRYRDRPLPGHNIALLVEDSRSGKRLFYAPGLGEPTPALLAWMRHADCLLLDGTLWTDDEMQTAGVGTHRGQEMGHLALGGEQGLLAMFSEMPAERKIVIHINNTNPILDDASPERRRLMQQGIEVSWDGMHIEL
>NZ_CP006569.1|WP_025421702.1|1729449_1730211_-|pyrroloquinoline-quinone-synthase-PqqC
MDQTLAAPLSPAAFEQALRDKGAYYHIHHPYHIAMHNGQATRAQIQGWVANRFYYQVSIPLKDAAIMANCPDPAVRRQWIQRILDHDGREGQEGGMDAWLRLGEAVGLAPEELLSQRRVLPGVRFAVDAYVNFARRACWQEAACSSLTELFAPHIHQSRLDSWPQHYPWIDGAGYDYFRNRLSQANRDVEHGLQLALTYFRTYESQQRMLQILQFKLDILWSMLDAMSMAYELHRPPYHTVTAQPVWHHGGLV
>NZ_CP006569.1|WP_025421712.1|1738618_1739296_-|fructose-6-phosphate-aldolase
MNIYLDSGDSAAVQRVSYSLPIAGVTTNPSILARGKLAPETCLTQLRVAIGPDKPLFAQVLAETAEEMVHEARALYARDRATVVKIPVTREGLAAIGLLRGSGIPTLGTAVYAPIQGLLAALAGAAYVAPYVNRIDAQGGSGLQCVRELQSLLSQHAPDCQMLAASFKSPRQVLDCMLAGCRHVTLAVDIAEQLLQSPAVDAAVAQFKTEWEQAFGQQTIGTPQR
>NZ_CP006569.1|WP_025421713.1|1740406_1741936_+|hypothetical-protein
MVTLSGSTINYYPLHKTTTQPSSVYDPLQDKLTIIKRFFSEANVDVTNNPEAYSLQEALKHALICSAEAENIGVPTTVIIDDFKGLFVEFTRSERTHPQKSVAITLLSLKCPLVVITASIEDTLYSEKIINLLEEERQAIRKRYRTEVESMHYAALRALERKKTALTALRKDKSIEGWREYIRDELHHFDIEVRVNNLVEYKRVYNLPNVYRYFFDFKVMDFNDFICKLMKSYDFGSRYEHYYDTQTYDVDQREFAVVPKGRALGTTNIRQCVAVIIKGNKSTALAHVDLHTLQQSLEKAIIAAFPDDDTLQVRVYGPTDRVKKDEKPERLSRLQKIANENIRTVLESIKSLRCQGRNVNIASIQTNVSIEEKLLKQLEFENPLLPADWTDIITTGDDIYQDVNPPTLNPSIALRKMIRFNSNDWKMFDKPERSSNLFRYNINNFTCIDEFIKDNPQHHFSLSAEDLTSIFLLMTDIMLEDVSEQDNYDKLANGLTPAYIAYLMTQKML
>NZ_CP006569.1|WP_025421714.1|1742163_1743294_+|lactonase-family-protein
MITLSPARRFALSAALIAVGTPALAQTYAYVSNADSGTITRYKLDTQTGKLTLLGATPAAAKVMPMALSPDRQHLYSAERTQPWSVITWQIDRQTGDLQQQAVTPVAASFPYIAVDKSGRYLLGASYDSDIVTSNRIDAQGKVTALVTGSYHTGPHAHSVIPDNTNRVLFVGNLGSDRVLQLRLADNGAISALGDGYVQDEKNSGPRHSVVSPDNRYLYNLAEMAGTITQYRLGEEGALSRVQRWPNAVAAQYHLQHGKERSGNYTDPTPRIWSADIKMTPNGHFLYVSERTSSTVSGYRVDGQSGALTLIGSWAVEQQPRGIAVDDSGKWLVVSGEKSPVVGSYAIDPRTGALARVSEAPCGKDANWVTLVSVTL
>NZ_CP006569.1|WP_025421715.1|1743663_1744536_-|transcriptional-regulator-LrhA
MIHTDNLDIELLRTFVAVADLRSFARAGAQIGRTQGAISQQMQRLENLVGIALFQKEGRNKQLTQQGRQLLSYARDLLTLNDDAFRSLQDNRFSGVLRIGSPHDVSETLLPHLLSQIARWAPRLNLELEVGRSRFLMDALHRGEINMTLSTRQDPTLEGLLLRTSPTVWICSAHYVHLPEEPIPLILADHPSIYRRVAVAALDAAQVRWRLAYTTSNLLGIKAAIKARLGVTARSIEMLDPDMRVLGENDGLPRLPDTQFYLWIRPGMGSALVRQAFEVLANNLVGQKRL
>NZ_CP006569.1|WP_025421716.1|1744936_1745308_-|helix-turn-helix-transcriptional-regulator
MPTALETMLNDVNATRPILEQIANKWSVLILTVVCSQPARFNAIKRRLDPITHKALTEALRRLERNGLVSRHVIASSPVAVEYAITPLGKTLQTPFTTLIAWANQHGPDLLDAQETYDDRSTG
>NZ_CP006569.1|WP_025421717.1|1745417_1746149_+|SDR-family-oxidoreductase
MQALQGKTAVITGGNSGIGLAIARRFASEGAYVFITGRRQGELDNAVAAIGANVEAVAGDITEEANLARLFAAVQARRAGLDILVTNAGVAEYAPLEDITPQHFERTFGLNARATLFTVQGALPLMTRGGAIVLLGSIAGTTGTAGYTTYGASKAAIRAFARTWTRELAGRGIRVNTLSPGPIDTPMFEGASDALRESLVSQIPLGRMGQPEEVAAAALFLASDESRYIAGAELCIDGGLAQV
>NZ_CP006569.1|WP_148296254.1|1746304_1747060_-|UTRA-domain-containing-protein
MTMHLSEGMMSDASHTPIYIRIQQFIRQQIQSGRLQEGDRIATELTLARHFATSRATVARAIQQLVYEGVIVRRPGSGSFVSTRAITAPLQLTRVYSFEDKLSAEGAQIDYHILAFSALAASEIWAHLLHIGTGDPVYQLRRLRIVSQRRMSLEVRILPAALGQRMTVEMLQNQSVHQILAGLALPVRRVEGKIRACLADGGLAREMAVQEGSALLVRDYVLTGDNRQPLVCGESYYRPDFHIDYQVEDSH
>NZ_CP006569.1|WP_025421719.1|1747263_1748082_+|ABC-transporter-permease
MTQAVDDFTRRGPRDRLRLLCGQRRYGLIYLVSILAGMMIWLAISRHFAGFILAPPHKVIERLWELTLSARLPLALLDASRHMLLGFAIALVIALPLGMLMGRHRVIHDVFDPLVTLIYAVPSVAWAPFIMIWFGLYFEARVALVVIMCLFDMLIIIDAGTRNVDRRLLDVGRAFNATRRQQIRLILIPESLPFLFTALRIGAVRAVNAMITAELFLATVNLGAIMKQSAARFDSAGVLGVLFVLCVLGLLLQEILLILERRVCRWLPREAQ
>NZ_CP006569.1|WP_025421720.1|1748078_1748840_+|ABC-transporter-permease-subunit
MRLTYSPLLMNLTGCALALLAWQLGGMGLGDALLATPGAVALSWLALLGDAVFWRALVTMLMQMLAGYLLALAVGIPLGIAMGRSRWVMAAVKPWASMFIVVSAAALVPLFILLLGRGMLMCIAIVFVATLWYVVMTMQQAARDLPARYMNVALSFGASRHQRFRLVMLPALFPYLLVAARIGLTHSLRAMVTAEMFISTDFGGLLNDAGLELSTAPLFALIVMLMLISVTATGLLRWLAGRVAPWYASRTEH
>NZ_CP006569.1|WP_025421721.1|1748875_1749934_+|ABC-transporter-substrate-binding-protein
MLHDINRRQALRLGLGAIGALALNPLRLAQAAEGRVLKINSLASAAAVNVPLQAALRSILPTLPGYGQPAMQPTAKINQIVQEVVTGGADLGDADIASTLTAAEAGADVRIIGLSYSNTSQVIVANLDRIKTLADLGGEGVSVAVNSIGDFMYVMLQGVLAKHGIDAGKINFIEMGSSGDRMRALLAGRVDAVPMHVEQAEQLKTVKGRGTFGILVRPWQEYDNWFSAVIVTTASWLKSKENQDAAVAVLKSILTAFRRTNSDYAWYKSQVGQWASSKDLKAAGDDFLKPVWQTLTTGINAFPADMGSLTVEQVAKVIPVYQRAGALKGTVDLQTLIDRTWLDRALKELGAA

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Crispr_ID: NZ_CP006569_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006569_5

2404031-2404103

Orphan

Consensus_repeat	Method
GGCAACAGGGCAACATGTCACCATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006569_5

>merge|NZ_CP006569|5|2404031-2404103|CRISPRCasFinder
GGCTACAGGGCAACAGGGCTACATGTCACCATGATTACATAGCCGTACGGCTACAGGGCAGCATGGCCACATC

>NZ_CP006569|5|5|2404031-2404103|CRISPRCasFinder
GGCTACAGGGCAACAGGGCTACATG	TCACCATGATTACATAGCCGTAC
GGCTACAGGGCAGCATGGCCACATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006569.1\|WP_025422285.1\|2417336_2418044_-\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|226226
NZ_CP006569.1\|WP_025422271.1\|2398107_2398869_+\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	unknown	unknown	gnl\|CDD\|181605
NZ_CP006569.1\|WP_051440154.1\|2402371_2402935_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP006569.1\|WP_025422270.1\|2397194_2398031_+\|5-dehydro-4-deoxy-D-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|179169
NZ_CP006569.1\|WP_025422282.1\|2413218_2413686_-\|ATP-independent-periplasmic-protein-refolding-chaperone	unknown	unknown	gnl\|CDD\|182473
NZ_CP006569.1\|WP_025422277.1\|2405587_2408749_-\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273335
NZ_CP006569.1\|WP_025422272.1\|2398962_2399553_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|183256
NZ_CP006569.1\|WP_025422284.1\|2415793_2417089_+\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP006569.1\|WP_025422283.1\|2414106_2415567_-\|YchO/YchP-family-invasin	unknown	unknown	gnl\|CDD\|236661
NZ_CP006569.1\|WP_025422266.1\|2394328_2395201_+\|fructosamine-kinase-family-protein	unknown	unknown	gnl\|CDD\|367711
NZ_CP006569.1\|WP_025422268.1\|2395910_2396576_+\|hexitol-phosphatase-HxpB	unknown	unknown	gnl\|CDD\|236770
NZ_CP006569.1\|WP_025422273.1\|2399890_2402167_+\|catalase-HPII	unknown	unknown	gnl\|CDD\|236886
NZ_CP006569.1\|WP_025422267.1\|2395197_2395746_-\|membrane-protein	unknown	unknown	gnl\|CDD\|372875
NZ_CP006569.1\|WP_025422279.1\|2410507_2410846_-\|osmotically-inducible-lipoprotein-OsmE	unknown	unknown	gnl\|CDD\|183058
NZ_CP006569.1\|WP_025422278.1\|2408750_2409908_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|184990
NZ_CP006569.1\|WP_025422275.1\|2403042_2403624_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP006569.1\|WP_025422281.1\|2412123_2413017_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP006569.1\|WP_025422276.1\|2404157_2405585_-\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|182103
NZ_CP006569.1\|WP_025422269.1\|2396577_2396919_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380366
NZ_CP006569.1\|WP_025422280.1\|2411080_2411905_+\|ammonia-dependent-NAD(+)-synthetase	unknown	unknown	gnl\|CDD\|234831

Protein	Function_ID	Function_description	E-value
NZ_CP006569.1\|WP_025422285.1\|2417336_2418044_-\|gamma-glutamylcyclotransferase	gnl\|CDD\|226226	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism].	2.53912e-68
NZ_CP006569.1\|WP_025422271.1\|2398107_2398869_+\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	gnl\|CDD\|181605	PRK08993, PRK08993, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD.	3.74874e-164
NZ_CP006569.1\|WP_051440154.1\|2402371_2402935_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.04651e-12
NZ_CP006569.1\|WP_025422270.1\|2397194_2398031_+\|5-dehydro-4-deoxy-D-glucuronate-isomerase	gnl\|CDD\|179169	PRK00924, PRK00924, 5-keto-4-deoxyuronate isomerase; Provisional.	0
NZ_CP006569.1\|WP_025422282.1\|2413218_2413686_-\|ATP-independent-periplasmic-protein-refolding-chaperone	gnl\|CDD\|182473	PRK10455, PRK10455, periplasmic protein; Reviewed.	7.95943e-61
NZ_CP006569.1\|WP_025422277.1\|2405587_2408749_-\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
NZ_CP006569.1\|WP_025422272.1\|2398962_2399553_+\|metal-dependent-hydrolase	gnl\|CDD\|183256	PRK11648, PRK11648, metal-dependent hydrolase.	3.69916e-100
NZ_CP006569.1\|WP_025422284.1\|2415793_2417089_+\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.92833e-22
NZ_CP006569.1\|WP_025422283.1\|2414106_2415567_-\|YchO/YchP-family-invasin	gnl\|CDD\|236661	PRK10177, PRK10177, YchO/YchP family invasin.	0
NZ_CP006569.1\|WP_025422266.1\|2394328_2395201_+\|fructosamine-kinase-family-protein	gnl\|CDD\|367711	pfam03881, Fructosamin_kin, Fructosamine kinase. This family includes eukaryotic fructosamine-3-kinase enzymes. The family also includes bacterial members that have not been characterized but probably have a similar or identical function.	7.7777e-142
NZ_CP006569.1\|WP_025422268.1\|2395910_2396576_+\|hexitol-phosphatase-HxpB	gnl\|CDD\|236770	PRK10826, PRK10826, hexitol phosphatase HxpB.	6.86699e-126
NZ_CP006569.1\|WP_025422273.1\|2399890_2402167_+\|catalase-HPII	gnl\|CDD\|236886	PRK11249, katE, hydroperoxidase II; Provisional.	0
NZ_CP006569.1\|WP_025422267.1\|2395197_2395746_-\|membrane-protein	gnl\|CDD\|372875	pfam14002, YniB, YniB-like protein. The YniB-like protein family includes the E. coli YniB protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 180 amino acids in length. This family of proteins are integral membrane proteins.	4.60879e-97
NZ_CP006569.1\|WP_025422279.1\|2410507_2410846_-\|osmotically-inducible-lipoprotein-OsmE	gnl\|CDD\|183058	PRK11251, PRK11251, osmotically-inducible lipoprotein OsmE.	4.21964e-62
NZ_CP006569.1\|WP_025422278.1\|2408750_2409908_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|184990	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA.	3.5709e-108
NZ_CP006569.1\|WP_025422275.1\|2403042_2403624_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	6.42199e-12
NZ_CP006569.1\|WP_025422281.1\|2412123_2413017_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.35365e-32
NZ_CP006569.1\|WP_025422276.1\|2404157_2405585_-\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|182103	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein.	4.76613e-90
NZ_CP006569.1\|WP_025422269.1\|2396577_2396919_-\|cupin-domain-containing-protein	gnl\|CDD\|380366	cd02238, cupin_KdgF, pectin degradation protein KdgF and related proteins, cupin domain. This family includes bacterial and archaeal pectin degradation protein KdgF that catalyzes the linearization of unsaturated uronates from both pectin and alginate, which are polysaccharides found in the cell walls of plants and brown algae, respectively, and represent an important source of carbon. These polysaccharides, mostly consisting of chains of uronates, can be metabolized by bacteria through a pathway of enzymatic steps to the key metabolite 2-keto-3-deoxygluconate (KDG). Pectin degradation is used by many plant-pathogenic bacteria during infection, and also, pectin and alginate can both represent abundant sources of carbohydrate for the production of biofuels. These proteins belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	6.55963e-43
NZ_CP006569.1\|WP_025422280.1\|2411080_2411905_+\|ammonia-dependent-NAD(+)-synthetase	gnl\|CDD\|234831	PRK00768, nadE, ammonia-dependent NAD(+) synthetase.	0

>NZ_CP006569.1|WP_025422275.1|2403042_2403624_-|TetR/AcrR-family-transcriptional-regulator
MRKGAGEDFHRQRRAQIIEAAKESFAQSGFHGATMAELSQQSGLSAGQLYRYFDSKDALIDAVVRQVAGQWYRLLAEKLRALTDYAAILFPQSPFWSDWPARERVLLLETFSEASRSATLQSILRQEEQDLIDALVNHDAPPTSLQDESRRRAAIELLLTLINGAVCRTFHEEDIDSAITAAVTRFLSAAVRA
>NZ_CP006569.1|WP_051440154.1|2402371_2402935_+|TetR/AcrR-family-transcriptional-regulator
MKMNRADQILSAAETCVKQKGFHNTTVQEIAVMAGISTGLIYRYFKGKSDIIEALVNQVVERLQQKMKADSVLEGDSARLTLFAGDTVNVDTRDSIALMLAISAEASRNAHVQHIIHRAHLTLQEYAFSHFRALHANAKDSEIRTRLYIFSLIIDGVIMRKNVNIAQHNAAFWPLVDDLIRQMNSGA
>NZ_CP006569.1|WP_025422273.1|2399890_2402167_+|catalase-HPII
MSTPKDPSEAQQRLSHPAPAPDGRSSTPGLGSLAPDDGSHMPQPGPSEPGKQPTASGSAKFPNTTNAKLDLLEPHRKNGENQPLTTDQGTKISDDQNSLRAGKRGPTLLEDFIMREKITHFDHERIPERIVHARGSAAHGVFEVYRPLTEITKAGFLRDPSVKTPVYVRFSTVQGSRGSADTVRDIRGFAVKFYTQEGNFDLVGNNTPVFFIQDAHKFPDFVHAVKPEPHNEMPQGGTAHDSFWDYVSLQPETLHNVFWAMSDRGIPRSLRTMEGFGIHTFRLVNAEGQSTFVRFHWKPVAGKASLVWDEAQKIAGKDPDFHRRDLWEAIEAGDYPEWELGLQLIPEEDEHKFDFDLLDPTKLIPEALVPVEIVGKLTLNRNPDNFFAETEQVAFHPGHVVPGIDFSNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPVCPYHNFQRDGMHRQDIDTNPAAYEPNSLNDNWPRETAPAAENGGFESYHERIDGEKIRQRSDSFNEYFAHPRLFWLSQTPAEQQHIIDAFSFELGKVARPYIRERVIDLLTRVDVDLASQVAARLGYRLSDEAKNIAPPPAVNGITRDPTLSLYATGAGALKGRQVALLVSDGVDAADVLAAMQALKAEGVHAKLLASHMGNLLASDGSTLPIDGTIEGNPSITVDGVVVPNGNLDALLLDGAARHYILEAYKHLKPIALSGDARRFKPQLGLKDGDNEAGISEDGSISDPLMQAFLASLREHRVWSRLAKAAAVPA
>NZ_CP006569.1|WP_025422272.1|2398962_2399553_+|metal-dependent-hydrolase
MTAEGHFIFALASTILAKKMALTPALAQGDWWHIIAGGLLTCLLPDIDHPKSVLGQRLTWLSAPIARLCGHRGFTHSLLAIIAGILLFTLRLPPQSVIPLDAFHAMIIGYLSHIAADMLTPAGVPLLWPCRWRFRLPILSPAKGNQLERLVCIAALIFALQHPEGAPLVRHPAVPESVQALWQRVRASLLPTPLRK
>NZ_CP006569.1|WP_025422271.1|2398107_2398869_+|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD
MILERFALQGKVAVITGCDTGLGQGMAIGLAEAGCDIVGVNIVEPDETLRQVETRGRRFLSIKADLSDTAVIPRVIAQAVAAFGHIDILVNNAGIIRRQDAIEFSEKNWDDVMNLNIKSLFFIAQAAARQFIQQGRGGKIINIASMLSYQGGIRVPSYTASKSAVMGITRLLANEWAQHGINVNALAPGYMATNNTQQLREDEARSQAILERIPAGRWGLPDDLMGPAVFLASAASDYVNGFTLAVDGGWLAR
>NZ_CP006569.1|WP_025422270.1|2397194_2398031_+|5-dehydro-4-deoxy-D-glucuronate-isomerase
MQVRQSIHSDHAKHLDTEGLRREFLIENMFVADQYTMTYSHSDRIIVGGIQPVTQAVTIGDEVGKQLGVSYFLERRELGVINIGGPGRVAVDGTRYEIEHEEALYVGQGARNIRFESINAGQPALFYYNSAPAHTTYPSRKITLAEATPQTIGDNVTSNRRTIHKFIVPDVLPTCQLTMGLTKLAEGNLWNTMPCHTHERRMEVYFYFNMDPETAVFHMMGQPQETRHVIVRNQQAVISPSWSIHAGVGTKNYTFIWGMVGENQVFDDMDHLLVSELR
>NZ_CP006569.1|WP_025422269.1|2396577_2396919_-|cupin-domain-containing-protein
MKTFYLDEETPWETLGEGIKRKVMTWSDELMMVCVHFAQGAVGTPHKHQIHDQIAYVAAGRFEVTIDGEARVLVAGDAYRAVKGQVHGVVALDDNSVLIDTFSPRRDDFLPAR
>NZ_CP006569.1|WP_025422268.1|2395910_2396576_+|hexitol-phosphatase-HxpB
MATPPKQQAVIFDMDGLIIDSEPLWHQAELAVFAELGKASSLAATLPDTLGLRINEVVDLWYQASPWQGPSRREVSGRIIERALGLIEQQRPLLPGVRQALTLATNCGLKIGLASASPLFMLERVLDLFALRHYFHFIASAEQLPYSKPHPEVYLRAAAGLDVEPMRCSTLEDSFNGMIATRAARMRSIVVPDAGLRDDPRWCLAQVRLPSLLALEAAHLL
>NZ_CP006569.1|WP_025422267.1|2395197_2395746_-|membrane-protein
MTYQQAGRLAVVKRIAGWVIFIPAVISTFISVLKFIEQHSGPNQGINAVVSDFFHVIIDMMRFNTPFLNAFWHNSPQPDFSRGLFASPNTLFWFIYILVFVGLALQASGARMSRQVKHVREGVEDQMVLEQARGDSGISRAQLEQRIVMPRHTILLQFFPLYILPVIIVVAGYFAFKLLGML
>NZ_CP006569.1|WP_025422266.1|2394328_2395201_+|fructosamine-kinase-family-protein
MWHAISTLLAETLDENEISQRRVLPGGELHTAWYLRYGPHHIFVKSDGHELLQKFADEADQLALLARSKTVRVPQVYGVGSARESSFLLLEYLPPRPFDAHGAWRFGQQLARLHQWSEQPQFGLDFDNDLSTLPQPNAWQRRWSRFFAEQRIGWQLQLAAEKGLVFGDIDTLIDRVEQRLHDHQPQPSLLHGDLWPDNCANSDQGGFLFDPASYWGDRECDLATLPLFSQMPPQIYDGYQSVWPLDKDFVRRQPVYQLYYRLKDAILFGGEHVPAAAAALDSVLAAGAGD
>NZ_CP006569.1|WP_025422276.1|2404157_2405585_-|efflux-transporter-outer-membrane-subunit
MLARRIIMVAPLLLSGCLSLDPHYTRPAAPVPDRLPTGGAYASLGHAPGSNYRDIAWRDYILDDRLRQTVAMALNSSRDLREAVADVKAAKAQYGEERSNLFPTVDAELSGTRSRALTGEGNQTAISQSTQAEGSISSFELDLFGKNQSLTREQYETYLGTLAGARSTRLTVLYNTVYYWLALAADQSNLAIAQQTAQSARQSLEVTQKKLQHGIVSGVDVASAETTYQSAMADIASYQTSVAQDKNALDLVVGQRVPDAWLPNGIEQLSGALSEMPADISSQVLLNRPDVLEAEHNLKAANASIGAARANFFPSISLTTSAGVGSNALSSLFKHGAGIWSFSPSVSLPLFTGGYNTAQLNYTRAQKELYVATYEKAVQTAFQEVADALARRGTIHAQLTGHTDYVAAAGRYYHLADLRYQNGVDTYLNALDAQRELYSARTELVSTQLAYYQNLITLYKVMGGGTALAESKLAL
>NZ_CP006569.1|WP_025422277.1|2405587_2408749_-|multidrug-efflux-RND-transporter-permease-subunit
MLAGFFIRRPVFAWVIAIIIVLFGVLSINTLPVAQYPDVAPPQITIEATYTGASAETLESSVTQVIEQQLTGLDGLLYFSSTSTASTGQSKITVTFQQGTDPDIAQVQVQNKVQQAESRLPDSVTSQGVTVAKAQSDFLLIMTLYDKADKSTSSDVADYLISNMQDTLARVQGVGDVQVFGSEYAMRIWLDPAKLAAYSLMPSDVETALENQNTQVSSGQIGAQPAGKDQQLVATVRSRSRLQTPEQFRNIVLKTNSGGSIVRLADVARVEMGDEDYSTNVLANGHPAAGMAIKLAPGANALSTAEKVKSTISELQSGMPASYTVAYPLDSTEFIKVSIEEVVKTLGEAILLVVVVMFVFLQNWRTTLIPAIAVPVVLLGTFGVLSLFDYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMREEKLSPRDATAKSMKEITSALIGIALVLSAVFLPMSFFSGSTGVIYRQFSITIVSSMILSVVVALTLTPALCASFLQPHDDEHSEKGFFGWFNRHYDALQTRYENRVGRVIHGPLRYLLLYAVLLLACAVMYVRLPTGFLPTEDQGYIMVQYQLPPGATESRTRNVRSEIQQYFLNQEKDNINVGMLVNGFSFAGSGQNAGVGFIALKNWSDRKGTENEADAIALRAMKHFAGMRDAQVYVLTPPAISGLGQSNGFTFELQARPGTDRSQLLKLRDQLIANAAKDATLASVRANTLPDLPQLQVDIDDDKAETLGTSVSDINDTLGSALGGTYVNDFTDRGRVKKVYIQGDADFRSKPEDINRWFVKGTDSDGNDTMVPFSSFATSHWIYGADTLSRYNGLASYEIQGEAASGSSSGNAMNQMETLAGQLPAGSSHAWSALSYQERLSGNQAMSLYAISLVVVFLCLAALYESWSVPFSVMMVVPLGVVGSLLAITMRGLENDVYFQVALLTIIGLSSKNAILIVEFAEERYRQGQTLIAAAVHAAAMRLRPILMTSLAFAAGVLPLAVSTGAGANSRIAIGTGIIGGIITATLLAIFLVPLFFVIVRRIFPGIPEGEHPVKSTHQDTGA
>NZ_CP006569.1|WP_025422278.1|2408750_2409908_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MFLSRFLAVGLIFLVVACDRQPDTNPAGAATEVGVKTLQPQSVTLTSDLTGRVKGSLVSDVRPQVDGIIQKRLFTEGDEVKEGQALYQIDPASYQATYDEAVGQLKNAVAVVNSSKLKAQRYTALVKENGVSRQDADEAVATWQQNVASVDQYRAAVQSARIDLQRTVIKAPISGRIGISSVTPGALVEANQSDALATIRALDPIYVDLTQSSSQLLQLRRQQGTLKQEGDTVPVTVTLEDGTRYAHTGKLELTEVAVDESTGTVTLRAILPNPQHELLPGMYVRASVSNGVKANAILAPQQGITRDAKGNATALVVGQDNKVESRQVTVDRVIGSDWLVNEGLKAGDRVIVEGTSKVQTGMTVKAVEATTPSDAAQTTDGSGGE
>NZ_CP006569.1|WP_025422279.1|2410507_2410846_-|osmotically-inducible-lipoprotein-OsmE
MNNKMVLAISAAAAISFLSGCTAYDRADSYLNKPVVSDVKKGMTKEQARAIGGVPATSSTMINARGTCDSYVLGNRDGKPINYFVSYDETGKVLNKGFQSCQEYDTNPQQGQ
>NZ_CP006569.1|WP_025422280.1|2411080_2411905_+|ammonia-dependent-NAD(+)-synthetase
MALQQEIIAALGVKPTIDPAAEFRVSVDFLKAYLKKYTFVRTLVLGISGGQDSTLTGKVCQQAISELRQETGVADYRFIAVRLPHGEQKDEADCRDAIAFIQPDQVITVNIKSAIQASEATLREAGIALSDYVKGNEKARERMKAQYSIAGMTSGLVVGTDHAAEAVTGFFTKYGDGGTDINPLFRLNKRQGRAILQHLGCPEHLYLKAPTADLEEDRPALPDETALGVTYEMVDDYLEGKTIDAAAARVIENWYQRTEHKRHPPVTVFDDFWQ
>NZ_CP006569.1|WP_025422281.1|2412123_2413017_-|LysR-family-transcriptional-regulator
MRLRHIEIIHAIMASGSISGAARRLNVSQPNISRVLAHAEQQLGFALFDRRPSGLQPTSRAQRMMPEIDQLYLQLQRIDQLAQRLRAPEQLRIGAAHAIGQSLMAQVLLDYRRQAEPLPADVELVTGHHDTLCQDLLADRLDLALTFGQSLAPRLTAEVLYQADMVALVPPSVTVAAPVSLAWLCEHHLLMMQPQDPLGRVLHQTLRAQGLRSCGTLQIKTYSVIADMVLAGGGVGIVDTFTARRYAQQLQVVKIQGALPFEVQLLMTASHAADPAVLLMRSIIRRRLEQWVDAQAA
>NZ_CP006569.1|WP_025422282.1|2413218_2413686_-|ATP-independent-periplasmic-protein-refolding-chaperone
MRKSTAFALATSLMLGTVQLASAADTAAAPAAPESAKMHHHPKHGPMMEQMFKDLNLTTAQREQMRDIARDSMKNMKKPSADEHKQLHDVIAADNFDSSKAQALVTSMSQAQNERMLARLEMQNKMYNVLTPAQKQEFNKKFEARQAKMAEQGNN
>NZ_CP006569.1|WP_025422283.1|2414106_2415567_-|YchO/YchP-family-invasin
MNVFIPNRRLCAVMSYVIMGFILGAATAGPFFCPFPAVARVTPQDNDNALLSQQQSLPSLGSASVNESGSEKKLATIARQMAEVNQDENNDQTWRSYLLGEAKDRVLNRLQQKSEAMLSPLGYTQVQLNVDESGRFSGSSGQMLLPLDDQKTRGLTYGQLGLQGVDDDIVGNMGLGQRWNAGRWLLGLNVFYDQYLQHNSLRRGSVGAEARSDYLSLSSNYYYPLSAMHALNDDDDQRVRMASGYDITTQGYLPFYRQLGASVKYEQYFGQRVDVFDSGNYRANPAAVELGVSYTPVPLMTLSASHKLGDGGESAEQYQLTLNYRLGVPIYRQLSADYVAEAHSLRGSRYDQVQRNAVPVLAFKQRKSLSVFLATPPWSLQPGTSLALKVQVSARYPLTAVSWQGDTQALSLTPPADSGQPDGWSIILPPWDDAPGARNQYRLSVTVEDEKQQRVTSNWIVLKLNAPLQAAADGEEPLTFTTRDGA
>NZ_CP006569.1|WP_025422284.1|2415793_2417089_+|acyltransferase
MTQLEKERFIGLEWLRFLLGCYVMIYHTAHHYPQFNAVFGLSELTSMGFFATSAFFVLSGFLLAHVYVRGRGLREPASHFWRKRLFNLYPIHIVALVSSMLVVTFMQWLAIPPEGPGATIRFVVYDTNEILGQTHPELFRHYMDNVQLAFNSVLQLFMLQAWNPYFLTFNAPLWSLSALFFFYLLFPWAAPRLMNARNPWLWLGICMLVYLLPPLWVIWQHQYGVPYTGLLQRLPLFRVPEFFGGILAYALFKRAHLSGVVLSAAARRMMVLFIVGCFLLATVLFTHGPKYWYFLLHNGLLLPSQLMLITLCALARNPDSAWLRHWSPRLGAASLSMFALHVPLFNLFMTLEQLVRGAPGQCLNQWSECVAAAANVKLSLTGYALFLVLTVTVCVLFQERFVVRVRKWLVARFIGHPAKPVGETGVKTSGS
>NZ_CP006569.1|WP_025422285.1|2417336_2418044_-|gamma-glutamylcyclotransferase
MLTRDFLQKADCKTAFGIIDESLLLTPEQRRASLACTLSRRPDNSPVWIFGYGSLMWNPIFEAEEVRPATLFGWHRAFCLRLISGRGTSSQPGRMLALKEGGQTTGLAFRLPEDRLHEELELLWKREMLTGCYIPIWSELTLDNGDSVTALAFVMDPCHPFFEADTRSQVIAPLIACASGPLGTNAQYLFALEQELNNYGMQDDCMVELVKQVRQLIQGRAAVNQTPRDEPPLAI

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Crispr_ID: NZ_CP006569_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006569_6

2418513-2418732

Orphan

Consensus_repeat	Method
GGCGCCGACACGTCCAATCGGGCAAAGCCGCGCACGGGGACGGCGCTGGTACGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006569_6

>merge|NZ_CP006569|6|2418513-2418732|CRISPRCasFinder
GGCGCTGCACGGGCAATCGGGGTAACTACGCGCAAGGGGACGGCGCCGGCACGTCCAATCGGGCAAAGCCGCGCACGGGGACGGCGCCGGCACGTCTAATCGGGGCAAAGCCGCGCACGGGGACGGCGCCAACGCGTCCAATCGGGGCAAAGCTGCGCACGGGGATGGCGCCGACACGTCCAATCGGGCAAAGCCGCGCACGGGGACGGCGCTGGTACGT

>NZ_CP006569|6|6|2418513-2418732|CRISPRCasFinder
GGCGCTGCACGGGCAATCGGGGTAACTACGCGCAAGGGGACGGCGCCGGCACGT	CCAATCGGGCAAAGCCGCGCACGGGGACGGCGCCGGCACGTCTAATCGGGGCAAAGCCGCGCACGGGGACGGCGCCAACGCGTCCAATCGGGGCAAAGCTGCGCACGGGGAT
GGCGCCGACACGTCCAATCGGGCAAAGCCGCGCACGGGGACGGCGCTGGTACGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006569.1\|WP_025422293.1\|2426651_2427914_-\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592
NZ_CP006569.1\|WP_025422289.1\|2422785_2423640_-\|3-deoxy-8-phosphooctulonate-synthase	unknown	unknown	gnl\|CDD\|235363
NZ_CP006569.1\|WP_025422283.1\|2414106_2415567_-\|YchO/YchP-family-invasin	unknown	unknown	gnl\|CDD\|236661
NZ_CP006569.1\|WP_025422282.1\|2413218_2413686_-\|ATP-independent-periplasmic-protein-refolding-chaperone	unknown	unknown	gnl\|CDD\|182473
NZ_CP006569.1\|WP_025422291.1\|2424695_2425544_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
NZ_CP006569.1\|WP_025422294.1\|2428137_2428758_+\|lipoprotein-localization-protein-LolB	unknown	unknown	gnl\|CDD\|234578
NZ_CP006569.1\|WP_025422286.1\|2418885_2419116_-\|putative-cation-transport-regulator-ChaB	unknown	unknown	gnl\|CDD\|181967
NZ_CP006569.1\|WP_025422284.1\|2415793_2417089_+\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP006569.1\|WP_025422285.1\|2417336_2418044_-\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|226226
NZ_CP006569.1\|WP_025422287.1\|2419590_2420685_+\|sodium-potassium/proton-antiporter-ChaA	unknown	unknown	gnl\|CDD\|182580
NZ_CP006569.1\|WP_025422288.1\|2420847_2422578_+\|C4-dicarboxylic-acid-transporter-DauA	unknown	unknown	gnl\|CDD\|183265
NZ_CP006569.1\|WP_025422295.1\|2428757_2429615_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|234731
NZ_CP006569.1\|WP_025422290.1\|2423682_2424492_-\|tetratricopeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|182854
NZ_CP006569.1\|WP_025422278.1\|2408750_2409908_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|184990
NZ_CP006569.1\|WP_025422279.1\|2410507_2410846_-\|osmotically-inducible-lipoprotein-OsmE	unknown	unknown	gnl\|CDD\|183058
NZ_CP006569.1\|WP_025422281.1\|2412123_2413017_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP006569.1\|WP_025422277.1\|2405587_2408749_-\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273335
NZ_CP006569.1\|WP_025422292.1\|2425543_2426626_-\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NZ_CP006569.1\|WP_025422276.1\|2404157_2405585_-\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|182103
NZ_CP006569.1\|WP_025422280.1\|2411080_2411905_+\|ammonia-dependent-NAD(+)-synthetase	unknown	unknown	gnl\|CDD\|234831

Protein	Function_ID	Function_description	E-value
NZ_CP006569.1\|WP_025422293.1\|2426651_2427914_-\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	0
NZ_CP006569.1\|WP_025422289.1\|2422785_2423640_-\|3-deoxy-8-phosphooctulonate-synthase	gnl\|CDD\|235363	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional.	0
NZ_CP006569.1\|WP_025422283.1\|2414106_2415567_-\|YchO/YchP-family-invasin	gnl\|CDD\|236661	PRK10177, PRK10177, YchO/YchP family invasin.	0
NZ_CP006569.1\|WP_025422282.1\|2413218_2413686_-\|ATP-independent-periplasmic-protein-refolding-chaperone	gnl\|CDD\|182473	PRK10455, PRK10455, periplasmic protein; Reviewed.	7.95943e-61
NZ_CP006569.1\|WP_025422291.1\|2424695_2425544_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	8.27561e-134
NZ_CP006569.1\|WP_025422294.1\|2428137_2428758_+\|lipoprotein-localization-protein-LolB	gnl\|CDD\|234578	PRK00022, lolB, lipoprotein localization protein LolB.	6.65678e-92
NZ_CP006569.1\|WP_025422286.1\|2418885_2419116_-\|putative-cation-transport-regulator-ChaB	gnl\|CDD\|181967	PRK09582, chaB, putative cation transport regulator ChaB.	1.09612e-31
NZ_CP006569.1\|WP_025422284.1\|2415793_2417089_+\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.92833e-22
NZ_CP006569.1\|WP_025422285.1\|2417336_2418044_-\|gamma-glutamylcyclotransferase	gnl\|CDD\|226226	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism].	2.53912e-68
NZ_CP006569.1\|WP_025422287.1\|2419590_2420685_+\|sodium-potassium/proton-antiporter-ChaA	gnl\|CDD\|182580	PRK10599, PRK10599, sodium-potassium/proton antiporter ChaA.	0
NZ_CP006569.1\|WP_025422288.1\|2420847_2422578_+\|C4-dicarboxylic-acid-transporter-DauA	gnl\|CDD\|183265	PRK11660, PRK11660, putative transporter; Provisional.	0
NZ_CP006569.1\|WP_025422295.1\|2428757_2429615_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|234731	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	1.33244e-180
NZ_CP006569.1\|WP_025422290.1\|2423682_2424492_-\|tetratricopeptide-repeat-containing-protein	gnl\|CDD\|182854	PRK10941, PRK10941, tetratricopeptide repeat-containing protein.	0
NZ_CP006569.1\|WP_025422278.1\|2408750_2409908_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|184990	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA.	3.5709e-108
NZ_CP006569.1\|WP_025422279.1\|2410507_2410846_-\|osmotically-inducible-lipoprotein-OsmE	gnl\|CDD\|183058	PRK11251, PRK11251, osmotically-inducible lipoprotein OsmE.	4.21964e-62
NZ_CP006569.1\|WP_025422281.1\|2412123_2413017_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.35365e-32
NZ_CP006569.1\|WP_025422277.1\|2405587_2408749_-\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
NZ_CP006569.1\|WP_025422292.1\|2425543_2426626_-\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NZ_CP006569.1\|WP_025422276.1\|2404157_2405585_-\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|182103	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein.	4.76613e-90
NZ_CP006569.1\|WP_025422280.1\|2411080_2411905_+\|ammonia-dependent-NAD(+)-synthetase	gnl\|CDD\|234831	PRK00768, nadE, ammonia-dependent NAD(+) synthetase.	0

>NZ_CP006569.1|WP_025422285.1|2417336_2418044_-|gamma-glutamylcyclotransferase
MLTRDFLQKADCKTAFGIIDESLLLTPEQRRASLACTLSRRPDNSPVWIFGYGSLMWNPIFEAEEVRPATLFGWHRAFCLRLISGRGTSSQPGRMLALKEGGQTTGLAFRLPEDRLHEELELLWKREMLTGCYIPIWSELTLDNGDSVTALAFVMDPCHPFFEADTRSQVIAPLIACASGPLGTNAQYLFALEQELNNYGMQDDCMVELVKQVRQLIQGRAAVNQTPRDEPPLAI
>NZ_CP006569.1|WP_025422284.1|2415793_2417089_+|acyltransferase
MTQLEKERFIGLEWLRFLLGCYVMIYHTAHHYPQFNAVFGLSELTSMGFFATSAFFVLSGFLLAHVYVRGRGLREPASHFWRKRLFNLYPIHIVALVSSMLVVTFMQWLAIPPEGPGATIRFVVYDTNEILGQTHPELFRHYMDNVQLAFNSVLQLFMLQAWNPYFLTFNAPLWSLSALFFFYLLFPWAAPRLMNARNPWLWLGICMLVYLLPPLWVIWQHQYGVPYTGLLQRLPLFRVPEFFGGILAYALFKRAHLSGVVLSAAARRMMVLFIVGCFLLATVLFTHGPKYWYFLLHNGLLLPSQLMLITLCALARNPDSAWLRHWSPRLGAASLSMFALHVPLFNLFMTLEQLVRGAPGQCLNQWSECVAAAANVKLSLTGYALFLVLTVTVCVLFQERFVVRVRKWLVARFIGHPAKPVGETGVKTSGS
>NZ_CP006569.1|WP_025422283.1|2414106_2415567_-|YchO/YchP-family-invasin
MNVFIPNRRLCAVMSYVIMGFILGAATAGPFFCPFPAVARVTPQDNDNALLSQQQSLPSLGSASVNESGSEKKLATIARQMAEVNQDENNDQTWRSYLLGEAKDRVLNRLQQKSEAMLSPLGYTQVQLNVDESGRFSGSSGQMLLPLDDQKTRGLTYGQLGLQGVDDDIVGNMGLGQRWNAGRWLLGLNVFYDQYLQHNSLRRGSVGAEARSDYLSLSSNYYYPLSAMHALNDDDDQRVRMASGYDITTQGYLPFYRQLGASVKYEQYFGQRVDVFDSGNYRANPAAVELGVSYTPVPLMTLSASHKLGDGGESAEQYQLTLNYRLGVPIYRQLSADYVAEAHSLRGSRYDQVQRNAVPVLAFKQRKSLSVFLATPPWSLQPGTSLALKVQVSARYPLTAVSWQGDTQALSLTPPADSGQPDGWSIILPPWDDAPGARNQYRLSVTVEDEKQQRVTSNWIVLKLNAPLQAAADGEEPLTFTTRDGA
>NZ_CP006569.1|WP_025422282.1|2413218_2413686_-|ATP-independent-periplasmic-protein-refolding-chaperone
MRKSTAFALATSLMLGTVQLASAADTAAAPAAPESAKMHHHPKHGPMMEQMFKDLNLTTAQREQMRDIARDSMKNMKKPSADEHKQLHDVIAADNFDSSKAQALVTSMSQAQNERMLARLEMQNKMYNVLTPAQKQEFNKKFEARQAKMAEQGNN
>NZ_CP006569.1|WP_025422281.1|2412123_2413017_-|LysR-family-transcriptional-regulator
MRLRHIEIIHAIMASGSISGAARRLNVSQPNISRVLAHAEQQLGFALFDRRPSGLQPTSRAQRMMPEIDQLYLQLQRIDQLAQRLRAPEQLRIGAAHAIGQSLMAQVLLDYRRQAEPLPADVELVTGHHDTLCQDLLADRLDLALTFGQSLAPRLTAEVLYQADMVALVPPSVTVAAPVSLAWLCEHHLLMMQPQDPLGRVLHQTLRAQGLRSCGTLQIKTYSVIADMVLAGGGVGIVDTFTARRYAQQLQVVKIQGALPFEVQLLMTASHAADPAVLLMRSIIRRRLEQWVDAQAA
>NZ_CP006569.1|WP_025422280.1|2411080_2411905_+|ammonia-dependent-NAD(+)-synthetase
MALQQEIIAALGVKPTIDPAAEFRVSVDFLKAYLKKYTFVRTLVLGISGGQDSTLTGKVCQQAISELRQETGVADYRFIAVRLPHGEQKDEADCRDAIAFIQPDQVITVNIKSAIQASEATLREAGIALSDYVKGNEKARERMKAQYSIAGMTSGLVVGTDHAAEAVTGFFTKYGDGGTDINPLFRLNKRQGRAILQHLGCPEHLYLKAPTADLEEDRPALPDETALGVTYEMVDDYLEGKTIDAAAARVIENWYQRTEHKRHPPVTVFDDFWQ
>NZ_CP006569.1|WP_025422279.1|2410507_2410846_-|osmotically-inducible-lipoprotein-OsmE
MNNKMVLAISAAAAISFLSGCTAYDRADSYLNKPVVSDVKKGMTKEQARAIGGVPATSSTMINARGTCDSYVLGNRDGKPINYFVSYDETGKVLNKGFQSCQEYDTNPQQGQ
>NZ_CP006569.1|WP_025422278.1|2408750_2409908_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MFLSRFLAVGLIFLVVACDRQPDTNPAGAATEVGVKTLQPQSVTLTSDLTGRVKGSLVSDVRPQVDGIIQKRLFTEGDEVKEGQALYQIDPASYQATYDEAVGQLKNAVAVVNSSKLKAQRYTALVKENGVSRQDADEAVATWQQNVASVDQYRAAVQSARIDLQRTVIKAPISGRIGISSVTPGALVEANQSDALATIRALDPIYVDLTQSSSQLLQLRRQQGTLKQEGDTVPVTVTLEDGTRYAHTGKLELTEVAVDESTGTVTLRAILPNPQHELLPGMYVRASVSNGVKANAILAPQQGITRDAKGNATALVVGQDNKVESRQVTVDRVIGSDWLVNEGLKAGDRVIVEGTSKVQTGMTVKAVEATTPSDAAQTTDGSGGE
>NZ_CP006569.1|WP_025422277.1|2405587_2408749_-|multidrug-efflux-RND-transporter-permease-subunit
MLAGFFIRRPVFAWVIAIIIVLFGVLSINTLPVAQYPDVAPPQITIEATYTGASAETLESSVTQVIEQQLTGLDGLLYFSSTSTASTGQSKITVTFQQGTDPDIAQVQVQNKVQQAESRLPDSVTSQGVTVAKAQSDFLLIMTLYDKADKSTSSDVADYLISNMQDTLARVQGVGDVQVFGSEYAMRIWLDPAKLAAYSLMPSDVETALENQNTQVSSGQIGAQPAGKDQQLVATVRSRSRLQTPEQFRNIVLKTNSGGSIVRLADVARVEMGDEDYSTNVLANGHPAAGMAIKLAPGANALSTAEKVKSTISELQSGMPASYTVAYPLDSTEFIKVSIEEVVKTLGEAILLVVVVMFVFLQNWRTTLIPAIAVPVVLLGTFGVLSLFDYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMREEKLSPRDATAKSMKEITSALIGIALVLSAVFLPMSFFSGSTGVIYRQFSITIVSSMILSVVVALTLTPALCASFLQPHDDEHSEKGFFGWFNRHYDALQTRYENRVGRVIHGPLRYLLLYAVLLLACAVMYVRLPTGFLPTEDQGYIMVQYQLPPGATESRTRNVRSEIQQYFLNQEKDNINVGMLVNGFSFAGSGQNAGVGFIALKNWSDRKGTENEADAIALRAMKHFAGMRDAQVYVLTPPAISGLGQSNGFTFELQARPGTDRSQLLKLRDQLIANAAKDATLASVRANTLPDLPQLQVDIDDDKAETLGTSVSDINDTLGSALGGTYVNDFTDRGRVKKVYIQGDADFRSKPEDINRWFVKGTDSDGNDTMVPFSSFATSHWIYGADTLSRYNGLASYEIQGEAASGSSSGNAMNQMETLAGQLPAGSSHAWSALSYQERLSGNQAMSLYAISLVVVFLCLAALYESWSVPFSVMMVVPLGVVGSLLAITMRGLENDVYFQVALLTIIGLSSKNAILIVEFAEERYRQGQTLIAAAVHAAAMRLRPILMTSLAFAAGVLPLAVSTGAGANSRIAIGTGIIGGIITATLLAIFLVPLFFVIVRRIFPGIPEGEHPVKSTHQDTGA
>NZ_CP006569.1|WP_025422276.1|2404157_2405585_-|efflux-transporter-outer-membrane-subunit
MLARRIIMVAPLLLSGCLSLDPHYTRPAAPVPDRLPTGGAYASLGHAPGSNYRDIAWRDYILDDRLRQTVAMALNSSRDLREAVADVKAAKAQYGEERSNLFPTVDAELSGTRSRALTGEGNQTAISQSTQAEGSISSFELDLFGKNQSLTREQYETYLGTLAGARSTRLTVLYNTVYYWLALAADQSNLAIAQQTAQSARQSLEVTQKKLQHGIVSGVDVASAETTYQSAMADIASYQTSVAQDKNALDLVVGQRVPDAWLPNGIEQLSGALSEMPADISSQVLLNRPDVLEAEHNLKAANASIGAARANFFPSISLTTSAGVGSNALSSLFKHGAGIWSFSPSVSLPLFTGGYNTAQLNYTRAQKELYVATYEKAVQTAFQEVADALARRGTIHAQLTGHTDYVAAAGRYYHLADLRYQNGVDTYLNALDAQRELYSARTELVSTQLAYYQNLITLYKVMGGGTALAESKLAL
>NZ_CP006569.1|WP_025422286.1|2418885_2419116_-|putative-cation-transport-regulator-ChaB
MPYQSNSSLPDSVTGVLPKHAQDIYREAFNSAWDQYKEASERRGHESREETAHKVAWAAVKHKYHKGEDDRWHPKK
>NZ_CP006569.1|WP_025422287.1|2419590_2420685_+|sodium-potassium/proton-antiporter-ChaA
MTSATPAVKTRHKEYSLIFPLAALGVLSLWGAATAIGVLVAINLLALLGILVSAFSVVRHADVLAHRLGEPLGSLILTLSVVILEVSLISALMATGNAAPALMRDTLYSVIMIVTTGLVGFSLLLGGSKFATQSLNLAGIKQYLMAIMPLSVIVLVFPSSLPGGNFTVAQMLIVGAVSAAMYGVFLLIQTRTHQKWFIYEHEDEDDDDPHGKPSAHGSLWHGAWLIIHLIAVVVVTKVNAEPLDHLLTAIDAPKQVTGFLVALLILSPEGLGAIRAVLANEVQRAMNLFFGSILATISLTVPTVTLIAIFTGNQLTFGLSLPQTVVMLTALIVCQVSLSTGRTNVLNGAAHLALFVAYLMTIML
>NZ_CP006569.1|WP_025422288.1|2420847_2422578_+|C4-dicarboxylic-acid-transporter-DauA
MKTHYFSGIRLFSALIDACWKERYTSQRLLKDTVAGITVGIIAIPLAMALAIASGVAPQYGLYTSAVAGIAIALCGGSRFSVSGPTAAFVVILYPVSQQFGLAGLLIATLMSGLLLIIMGLARLGRLIEFIPLPVTLGFTSGIAITIGTMQVKDFFGLHTATLPEHYLGKVAGLLSALPTFTFADTLVGIVTLGVLIYWPRLGIRLPPHLPALLAGVAVMGVLWVLGMPAATIGSRFSYLLADGTHGQGIPAILPHWLLPWQLPGADGTPVALTANTLSALLPAAFSMAMLGAIESLLCAVVLDGMTGKKHQSDNELIGQGIGNVLAPFFCGITATAAIARSAANVRAGATSPVSALVHALLVLLALLVLAPALSWLPLSAMAALLLLVAWNMSEAHKVIYLLRRAPKDDIIVMLLCMSLTVLFDMVIAITVGIVLASLLFMRRIARMTRLTELPCNLPMTRVIRINGPLFFAAAERIFAELSALTPKDKYLILQWDAVPVLDAGGLQAFMQFCNKLPAGQHVLVTDIPFQPLKTLARANVMPIADRLSFCSTLPQALEYLSAPPAADALAVGQNR
>NZ_CP006569.1|WP_025422289.1|2422785_2423640_-|3-deoxy-8-phosphooctulonate-synthase
MKQLVVNIGDIQVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTEKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKIFAELKAQFGVKVITDVHEAGQAQSVADVVDVIQLPAFLARQTDLVEAMARTGAVINVKKPQFISPGQVGNIVDKFREAGNHQVILCDRGSNFGYDNLVVDMLGFNVMKQVSGGCPVIFDVTHALQTRDPFGAASGGRRAQVSELARAGMAVGIAGLFIEAHPDPANAKCDGPSALPLAKLEPFLRQMKAIDELVKSFPELDTGH
>NZ_CP006569.1|WP_025422290.1|2423682_2424492_-|tetratricopeptide-repeat-containing-protein
MSTIADFEYNQHPLSEGMLRVTQAIRPDFAIDNVRAQLQSLTEEARRQIPADLAQDDQLAQLLELFYRTWGFGGVGGVYRLSDALWLDNVLARRQGLPASLGIILLHIAQALEIPLLPVIFPTQMILRADWLDGEMWLINPINGDPLDAHTLDIWLRGNLGEGVQLDEEDLEEADNNTVVRKLLDTLKGALMDEKQMELALRASEAMLEFDPADPYEIRDRGLIYVELECDHVALNDLNYFVEQCPEDPVSEMIKVQIHSIEQKSVTLH
>NZ_CP006569.1|WP_025422291.1|2424695_2425544_-|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MTWQQWLTQAAARLRDSLSPSAKRDAEILLAQVTGATRTRLLAFGETPLTDAQCATLETLLARRERGEPVAYLIGEREFWSLRLRVSPDTLIPRPDTECLVQRSLALLPPARAEVLDLGTGSGAIALALASERPAWRITGVDRSPGAVALARDNAARLGLTNVQFHESDWFKALQAQRYSLIVSNPPYIEADDPHLAQGDVRFEPRSALVAGEDGLKDLAAICREAGPHLLPGGWLLLEHGWRQGPAVRALLAEAGFDHTATLRDYGDNERVSQGQRLPEGK
>NZ_CP006569.1|WP_025422292.1|2425543_2426626_-|peptide-chain-release-factor-1
MKPSIVAKLEALQERREEVEVLLGDPGVIADQARFRVLSKEYAQLSDVTNCFQRWRQVQEDIHTAEHLLQDPEMRDMAQEELLASRASRERLEQQLQVLLLPKDPDDERGCFLEVRAGTGGDEAALFAGDLFRMYSRFAETRRWKVEIVSASDGEHGGFKEVIAKVSHEGAYGLLKFESGGHRVQRVPETESQGRIHTSACTVAVMPEIPEAELPEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGLVVECQDERSQHKNKAKALAVLGARLRAAEVQRRQQEESSTRRNLLGSGDRSDRIRTYNFPQGRVTDHRIGLTLYRLEEVIEGKLDMLIQPIMQEYQADQLAALSETP
>NZ_CP006569.1|WP_025422293.1|2426651_2427914_-|glutamyl-tRNA-reductase
MTLLALGINHKTAPVALRERVAFSPDTLDQALGSLLAQPLVQGGVVLSTCNRTELYLSVEQQADLQEALVRWLCDYHQLEPDQVRQSLYWYLGDEAVSHLMRVASGLDSLVLGEPQILGQVKKAFAESRRGHGLSVDLERLFQKSFSVAKRVRTETEIGSHAVSVAFAACTLARQIFESLAEVTVLLVGAGETIELVARHLREHKVKRLLIANRTRDRAQRLAEEVGADVISLAEIDSQLGEADIIITSTASTLPIIGKGMVERALKQRRYQPMLLVDIAVPRDIEPEVAKLADAYLYTVDDLQAIIEKNLAQRKHAAVLAETIVAQESLDFMGWLRSQSAVEAIRDYRTQADSLRAEFEARALAALRLGADPEQVVKEMAHKLTNRLIHAPTKSLQQAAREGDAERLHILRDGLGLDTH
>NZ_CP006569.1|WP_025422294.1|2428137_2428758_+|lipoprotein-localization-protein-LolB
MPERNYAVFRLLPLASLLLAACSVHTPSGPAKSQTSPEWRSHQQSVSTLTRYQTRGAFAYLSKEQKVYARFNWQQTSADRYRLILTNPLGSTEMDLNVQPGVAQLVNNQGKRYVSDDPEVMIQKLAGMSIPLNDLRQWMLGLPGDATDFTLDARGYLHQVNYSHNGQRWTVTYQGYHDDTVPALPSNLELRQGDNRIKLKMDSWSL
>NZ_CP006569.1|WP_025422295.1|2428757_2429615_+|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MTRQWPAPAKLNLFLYVTGRRADGYHLLQTLFQFLDYGDTLSITPTVDGRIRLLNPVAGVAEEDNLIVRAARLLQRHCWATDDPAAPGADIRLEKVLPMGGGLGGGSSDAATVLVALNAQWNCGLTLATLARLGLTLGADVPVFVHGEAAFAEGIGERLTPAAPAEKWYLVAVPPVSIATPRIFGDPELRRDAPPRSLAALMAAPFQNDCEPIARKHFSAVEQHLSWLLEYAPSRLTGTGACVFAEFDTEAAARQVLSQAPAWMRGFVARGVNVSPLHRALSGAQ

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Crispr_ID: NZ_CP006569_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006569_7

2433773-2433882

Orphan

Consensus_repeat	Method
CATATCAAAGATATGGATGTCCATGCGTTTGGGTGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006569_7

>merge|NZ_CP006569|7|2433773-2433882|CRISPRCasFinder
CATATCAAAGATATGGATGTCCATGCGTTTGGGTGCCCTGTACGTTGCCGGCGCAGCCACGGCGCAACAGCTCATATCAAAGGTATGGATGTCCATGCGTTTGGGTGCCC

>NZ_CP006569|7|7|2433773-2433882|CRISPRCasFinder
CATATCAAAGATATGGATGTCCATGCGTTTGGGTGCCC	TGTACGTTGCCGGCGCAGCCACGGCGCAACAGCT
CATATCAAAGGTATGGATGTCCATGCGTTTGGGTGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006569.1\|WP_025422304.1\|2438469_2439681_+\|propionate-kinase	unknown	unknown	gnl\|CDD\|183484
NZ_CP006569.1\|WP_025422300.1\|2434145_2435261_+\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341459
NZ_CP006569.1\|WP_025422298.1\|2431535_2432120_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NZ_CP006569.1\|WP_011411828.1\|2437638_2437911_+\|EutN/CcmL-family-microcompartment-protein	unknown	unknown	gnl\|CDD\|377017
NZ_CP006569.1\|WP_148296354.1\|2429734_2430682_+\|ribose-phosphate-diphosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP006569.1\|WP_025422291.1\|2424695_2425544_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
NZ_CP006569.1\|WP_004863596.1\|2439883_2440165_+\|propanediol-utilization-microcompartment-protein-PduA	unknown	unknown	gnl\|CDD\|132899
NZ_CP006569.1\|WP_025422306.1\|2441016_2442525_+\|aldehyde-dehydrogenase-EutE	unknown	unknown	gnl\|CDD\|237956
NZ_CP006569.1\|WP_025422294.1\|2428137_2428758_+\|lipoprotein-localization-protein-LolB	unknown	unknown	gnl\|CDD\|234578
NZ_CP006569.1\|WP_025422303.1\|2437931_2438447_+\|heme-binding-protein	unknown	unknown	gnl\|CDD\|377163
NZ_CP006569.1\|WP_025422302.1\|2436071_2436890_+\|ethanolamine-utilization-protein-EutJ	unknown	unknown	gnl\|CDD\|237904
NZ_CP006569.1\|WP_038668478.1\|2436901_2437630_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|292575
NZ_CP006569.1\|WP_025422295.1\|2428757_2429615_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|234731
NZ_CP006569.1\|WP_025422297.1\|2431016_2431295_-\|stress-induced-protein-YchH	unknown	unknown	gnl\|CDD\|371229
NZ_CP006569.1\|WP_025422301.1\|2435386_2436079_+\|phosphate-propanoyltransferase	unknown	unknown	gnl\|CDD\|237899
NZ_CP006569.1\|WP_025422299.1\|2432234_2433326_+\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NZ_CP006569.1\|WP_025422293.1\|2426651_2427914_-\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592
NZ_CP006569.1\|WP_025422292.1\|2425543_2426626_-\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NZ_CP006569.1\|WP_025422290.1\|2423682_2424492_-\|tetratricopeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|182854
NZ_CP006569.1\|WP_025422305.1\|2440186_2440972_+\|propanediol-utilization-microcompartment-protein-PduB	unknown	unknown	gnl\|CDD\|185313

Protein	Function_ID	Function_description	E-value
NZ_CP006569.1\|WP_025422304.1\|2438469_2439681_+\|propionate-kinase	gnl\|CDD\|183484	PRK12379, PRK12379, propionate kinase.	0
NZ_CP006569.1\|WP_025422300.1\|2434145_2435261_+\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341459	cd08180, PDD, 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme requires iron ion for its function. Because many genes in this pathway are present in the propanediol utilization (pdu) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinate synthase-like fold.	9.68247e-168
NZ_CP006569.1\|WP_025422298.1\|2431535_2432120_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	5.24994e-105
NZ_CP006569.1\|WP_011411828.1\|2437638_2437911_+\|EutN/CcmL-family-microcompartment-protein	gnl\|CDD\|377017	pfam03319, EutN_CcmL, Ethanolamine utilisation protein EutN/carboxysome. The crystal structure of EutN contains a central five-stranded beta-barrel, with an alpha-helix at the open end of this barrel (Structure 2HD3). The structure also contains three additional beta-strands, which help the formation of a tight hexamer, with a hole in the center. this suggests that EutN forms a pore, with an opening of 26 Angstrom in diameter on one face and 14 Angstrom on the other face. EutN is involved in the cobalamin-dependent degradation of ethanolamine.	1.24295e-35
NZ_CP006569.1\|WP_148296354.1\|2429734_2430682_+\|ribose-phosphate-diphosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NZ_CP006569.1\|WP_025422291.1\|2424695_2425544_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	8.27561e-134
NZ_CP006569.1\|WP_004863596.1\|2439883_2440165_+\|propanediol-utilization-microcompartment-protein-PduA	gnl\|CDD\|132899	cd07059, BMC_PduA, 1,2-propanediol utilization protein A (PduA), Bacterial Micro-Compartment (BMC) domain. PduA is encoded within the 1,2-propanediol utilization (pdu) operon along with other homologous carboxysome shell proteins PduB, B', J, K, T, and U. PduA is thought to be required for the formation of the outer shell of bacterial pdu polyhedral organelles which are involved in coenzyme B12-dependent degradation of 1,2-propanediol. Although it has been suggested that PduA might form hexamers and further assemble into the flat facets of the polyhedral outer shell of pdu organelles, like PduU does, at present no experimental evidence directly supports this view.	5.68962e-39
NZ_CP006569.1\|WP_025422306.1\|2441016_2442525_+\|aldehyde-dehydrogenase-EutE	gnl\|CDD\|237956	PRK15398, PRK15398, aldehyde dehydrogenase.	0
NZ_CP006569.1\|WP_025422294.1\|2428137_2428758_+\|lipoprotein-localization-protein-LolB	gnl\|CDD\|234578	PRK00022, lolB, lipoprotein localization protein LolB.	6.65678e-92
NZ_CP006569.1\|WP_025422303.1\|2437931_2438447_+\|heme-binding-protein	gnl\|CDD\|377163	pfam03928, Haem_degrading, Haem-degrading. Haem_bdg is a bacterial protein that is up-regulated in response to haemin- and peroxide-based oxidative stress. It interacts with the SenS/SenR two-component signal transduction system. Iron binds to surface-exposed lysine residues of an octomeric assembly of the protein.	1.3431e-31
NZ_CP006569.1\|WP_025422302.1\|2436071_2436890_+\|ethanolamine-utilization-protein-EutJ	gnl\|CDD\|237904	PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional.	1.28635e-140
NZ_CP006569.1\|WP_038668478.1\|2436901_2437630_+\|hypothetical-protein	gnl\|CDD\|292575	pfam15953, PDU_like, Putative propanediol utilisation. This family of proteins is found in bacteria. Proteins in this family are approximately 160 amino acids in length.	0.00244319
NZ_CP006569.1\|WP_025422295.1\|2428757_2429615_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|234731	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	1.33244e-180
NZ_CP006569.1\|WP_025422297.1\|2431016_2431295_-\|stress-induced-protein-YchH	gnl\|CDD\|371229	pfam10762, DUF2583, Protein of unknown function (DUF2583). Some members in this family of proteins are annotated as YchH however currently no function is known.	5.38707e-45
NZ_CP006569.1\|WP_025422301.1\|2435386_2436079_+\|phosphate-propanoyltransferase	gnl\|CDD\|237899	PRK15070, PRK15070, phosphate propanoyltransferase.	2.76602e-116
NZ_CP006569.1\|WP_025422299.1\|2432234_2433326_+\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NZ_CP006569.1\|WP_025422293.1\|2426651_2427914_-\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	0
NZ_CP006569.1\|WP_025422292.1\|2425543_2426626_-\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NZ_CP006569.1\|WP_025422290.1\|2423682_2424492_-\|tetratricopeptide-repeat-containing-protein	gnl\|CDD\|182854	PRK10941, PRK10941, tetratricopeptide repeat-containing protein.	0
NZ_CP006569.1\|WP_025422305.1\|2440186_2440972_+\|propanediol-utilization-microcompartment-protein-PduB	gnl\|CDD\|185313	PRK15415, PRK15415, propanediol utilization microcompartment protein PduB.	2.38452e-164

>NZ_CP006569.1|WP_025422299.1|2432234_2433326_+|redox-regulated-ATPase-YchF
MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRMDQLAEIVKPQRIVPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVAGKVDPAEDIDVINTELALSDLEACERAIHRVQKRAKGGDKDAKLELSALEKCLPHLSNAGMLRTLDLSSDEKSAIRYLSFLTLKPTMYIANVNEDGFDNNPYLDKVRAIAAAEGSVVVAVCAAVESDIAELDEEERDEFMAELGLDEPGLNRVIRAGYELLNLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQTISFADFITYKGEQGAKEAGKMRSEGKEYVVKDGDVMNFLFNV
>NZ_CP006569.1|WP_025422298.1|2431535_2432120_+|aminoacyl-tRNA-hydrolase
MTIKLIVGLANPGAEYAATRHNAGAWYVELLAERYRQTLKEESKFYGYTGRLTLGGNDVRLLVPTTFMNLSGKAVAAMATFYRIAPEEILVAHDELDLLPGSARLKLGGGHGGHNGLKDIINRLGNNPLFHRLRIGIGHPGDKNKVVGFVLGKPPAAELQLIDGAIDEAVRCTEILITQDAAKAMNRLHAYRPG
>NZ_CP006569.1|WP_025422297.1|2431016_2431295_-|stress-induced-protein-YchH
MRRKSAMLVGNSLMGAGMILMVASIAVSVLNQLPQIHMPNLMASGGIMGIFVGALLWLAGARMGGHEEISDRYWWHRRFDARCQKNHNARYH
>NZ_CP006569.1|WP_148296354.1|2429734_2430682_+|ribose-phosphate-diphosphokinase
MPDMKLFAGNATPELAQRIANRLYTSLGNAAVGRFSDGEVSVQINENVRGGDIFIIQSTCAPTNDNLMELVVMVDALRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVADFLSSVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQQDLENPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVLVDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAFDNIKNSVIDEVIVCDTIPLDPAIKALPNVRTLTLSGMLAEAIRRISNEESISAMFEH
>NZ_CP006569.1|WP_025422295.1|2428757_2429615_+|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MTRQWPAPAKLNLFLYVTGRRADGYHLLQTLFQFLDYGDTLSITPTVDGRIRLLNPVAGVAEEDNLIVRAARLLQRHCWATDDPAAPGADIRLEKVLPMGGGLGGGSSDAATVLVALNAQWNCGLTLATLARLGLTLGADVPVFVHGEAAFAEGIGERLTPAAPAEKWYLVAVPPVSIATPRIFGDPELRRDAPPRSLAALMAAPFQNDCEPIARKHFSAVEQHLSWLLEYAPSRLTGTGACVFAEFDTEAAARQVLSQAPAWMRGFVARGVNVSPLHRALSGAQ
>NZ_CP006569.1|WP_025422294.1|2428137_2428758_+|lipoprotein-localization-protein-LolB
MPERNYAVFRLLPLASLLLAACSVHTPSGPAKSQTSPEWRSHQQSVSTLTRYQTRGAFAYLSKEQKVYARFNWQQTSADRYRLILTNPLGSTEMDLNVQPGVAQLVNNQGKRYVSDDPEVMIQKLAGMSIPLNDLRQWMLGLPGDATDFTLDARGYLHQVNYSHNGQRWTVTYQGYHDDTVPALPSNLELRQGDNRIKLKMDSWSL
>NZ_CP006569.1|WP_025422293.1|2426651_2427914_-|glutamyl-tRNA-reductase
MTLLALGINHKTAPVALRERVAFSPDTLDQALGSLLAQPLVQGGVVLSTCNRTELYLSVEQQADLQEALVRWLCDYHQLEPDQVRQSLYWYLGDEAVSHLMRVASGLDSLVLGEPQILGQVKKAFAESRRGHGLSVDLERLFQKSFSVAKRVRTETEIGSHAVSVAFAACTLARQIFESLAEVTVLLVGAGETIELVARHLREHKVKRLLIANRTRDRAQRLAEEVGADVISLAEIDSQLGEADIIITSTASTLPIIGKGMVERALKQRRYQPMLLVDIAVPRDIEPEVAKLADAYLYTVDDLQAIIEKNLAQRKHAAVLAETIVAQESLDFMGWLRSQSAVEAIRDYRTQADSLRAEFEARALAALRLGADPEQVVKEMAHKLTNRLIHAPTKSLQQAAREGDAERLHILRDGLGLDTH
>NZ_CP006569.1|WP_025422292.1|2425543_2426626_-|peptide-chain-release-factor-1
MKPSIVAKLEALQERREEVEVLLGDPGVIADQARFRVLSKEYAQLSDVTNCFQRWRQVQEDIHTAEHLLQDPEMRDMAQEELLASRASRERLEQQLQVLLLPKDPDDERGCFLEVRAGTGGDEAALFAGDLFRMYSRFAETRRWKVEIVSASDGEHGGFKEVIAKVSHEGAYGLLKFESGGHRVQRVPETESQGRIHTSACTVAVMPEIPEAELPEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGLVVECQDERSQHKNKAKALAVLGARLRAAEVQRRQQEESSTRRNLLGSGDRSDRIRTYNFPQGRVTDHRIGLTLYRLEEVIEGKLDMLIQPIMQEYQADQLAALSETP
>NZ_CP006569.1|WP_025422291.1|2424695_2425544_-|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MTWQQWLTQAAARLRDSLSPSAKRDAEILLAQVTGATRTRLLAFGETPLTDAQCATLETLLARRERGEPVAYLIGEREFWSLRLRVSPDTLIPRPDTECLVQRSLALLPPARAEVLDLGTGSGAIALALASERPAWRITGVDRSPGAVALARDNAARLGLTNVQFHESDWFKALQAQRYSLIVSNPPYIEADDPHLAQGDVRFEPRSALVAGEDGLKDLAAICREAGPHLLPGGWLLLEHGWRQGPAVRALLAEAGFDHTATLRDYGDNERVSQGQRLPEGK
>NZ_CP006569.1|WP_025422290.1|2423682_2424492_-|tetratricopeptide-repeat-containing-protein
MSTIADFEYNQHPLSEGMLRVTQAIRPDFAIDNVRAQLQSLTEEARRQIPADLAQDDQLAQLLELFYRTWGFGGVGGVYRLSDALWLDNVLARRQGLPASLGIILLHIAQALEIPLLPVIFPTQMILRADWLDGEMWLINPINGDPLDAHTLDIWLRGNLGEGVQLDEEDLEEADNNTVVRKLLDTLKGALMDEKQMELALRASEAMLEFDPADPYEIRDRGLIYVELECDHVALNDLNYFVEQCPEDPVSEMIKVQIHSIEQKSVTLH
>NZ_CP006569.1|WP_025422300.1|2434145_2435261_+|iron-containing-alcohol-dehydrogenase
MASYFFSIPKVYFGEDAIKALRQLDHKKVGIVTDSFMATSGKARYLIGEMPQASVSIFSDVKPDPSVEILQAGAAQFKAFKPDAIIALGGGSSLDAAKGIKATLEEYFPGHAIVLIAIPTTSGSGSEVTSYAIISDPQNGRKYPLIAEELVPDYAILDPHLVLSVPRQVAVDTGMDVLTHAIEALVSSGANDFSDALAEKAIALTWQYLPAIFQDEKDILARTHMHNASCMAGMAFNSAGLGLVHGLAHAIGGMLHIPHGKINAMLLPFVIDWNARHAPHALPRYLKCAAIMGIQTGTQKPTLNALIDRIREMNQRFGIPATLRDLGKDLADFESLRQSLISAALADGCTASNPCQPTAADVDLLLTHIAG
>NZ_CP006569.1|WP_025422301.1|2435386_2436079_+|phosphate-propanoyltransferase
MNHNQQQAEWITQQIIQELATRDSRFSRPEPPRAQTLEIPVGISNRHVHLSREDMDALFGYGSTLTRMKAVKQPGQFAAEETVTLRGPKGELTKVRVLGPLRSATQIEISVSDGFVLGVKAPVRMSGDLQDSPGIDLIGPRGRVTTTGGAIIAWRHIHIAPAEAEQYGLRDGMEIDVRIDGHRGGILSHVVVRVSADAVLEMHIDVEEANGFGLRNGDCVKRVLTECSYG
>NZ_CP006569.1|WP_025422302.1|2436071_2436890_+|ethanolamine-utilization-protein-EutJ
MADSPEIRRLRDLAEKITSGDCRPCQGALKVGVDPGTANIALVVLDEEDNPVAGISHPSRAVKDGVVVDFLTASRVVSSLKATLEKRLNRTLTHAATAIPPGILPGNTKVIINMVEAAGFEVTEIVDEPVAAARALNIRDGAVVDVGGGTTGISILREGNVIFSADEPTGGNLMTLVLAGALGISFADAEEMKRAPEHEEQVFAIVRPVAEKMAHLAAGWLAHYPAEVLYLVGGASSFYQFADVFRQTTGKRVIQAAHPLFVTPLGIALHSH
>NZ_CP006569.1|WP_038668478.1|2436901_2437630_+|hypothetical-protein
MDSQRLSYLLDTLIEDLLKQRRLRLQTPNKMMHVILSGEDLRSLPATLACLSALDRCGYLLDMVFSHSASQSSLRSACLEALAQRGINVKCGSEQEPPVGEPCGNVYFPALSSNSLSKIALGIRDNLVCRWAFYALCMKKTAIVTLNAECQPEQNSALPQALRARLAHYAATLVEYGFTVIGQHTPGPDHTPLVHAHKPLVTLCDVRQYQKGQTLYIATGTLITPAARDEIRDRGLIIVHGH
>NZ_CP006569.1|WP_011411828.1|2437638_2437911_+|EutN/CcmL-family-microcompartment-protein
MYLAKVTGALVSTTKHASLNGAKLLIVARLDEHYRPTGTAQVAVDFVGAGNGETVIVTTGSSARMSTSKEHSVIDAAVVGIVDSLDFNGQ
>NZ_CP006569.1|WP_025422303.1|2437931_2438447_+|heme-binding-protein
MLPDHNAELEHRITLAIARQLSPRHRALSLADAALLAKYAIDAADEANVPIVFSLVDACGQQRYFFSMDNALLISHTLAGQKAWTAVALKMPTHKLAAQVQPGASLYGLQNNAGICCFGGGLPCWSGGELLGAIGISGGTVEEDIAIASAVLTRFSLEQFSLTPFNASLSK
>NZ_CP006569.1|WP_025422304.1|2438469_2439681_+|propionate-kinase
MSLASLVLVINCGSSSLKFSAIPLNDDAPVLSGLAEKLGLADASITIKDAAGNKATERLTDASHSCALKTLFTQLEHLALLSRVCAIGHRVAHGGSQFKRSVLLTDDVISRIRELSVLAPLHNPANLMGIDAAMSLLPHLPQVAVFDTAFHQTLPPAAYTYAIPLVYQQQHQVRRYGFHGTSHRFIAAEAVARLNLDPADHGIIIAHLGNGSSVCAVKNGRSVDTSMGMTPLEGLVMGTRCGDLDFGAAAYIARCTGQTIESLYKMVNHDSGLLGLSGLSSDCRTLQEARSNGCPGATLAIDVMVHRLARHLGAHLTSLHRFDALIFTGGIGENSALVRELTVQRLAVFGVQLDTVKNAQPFAGHEGVISVPGSPIVAVIPTNEEKMIAQDAAALCCAFEGVA
>NZ_CP006569.1|WP_004863596.1|2439883_2440165_+|propanediol-utilization-microcompartment-protein-PduA
MQQEALGMVETKGLVSAIEAADTMVKSANVTLVGYEKIGSGLVTVMVRGDVGAVKAATDAGSAAAGKVGELVSVHVIPRPHIEVEKILPKAVS
>NZ_CP006569.1|WP_025422305.1|2440186_2440972_+|propanediol-utilization-microcompartment-protein-PduB
MRDNLVEQIISEVMNKQTDVSTNNKTTASFAGCGLTEFVGTALGHTIGLVIANVDHQLHDVMNIDKKYRSIGILGARTGAGPHIFAADEAIKATNSEILSIELARDTEGGGGHGCLIIFGASDVSDVRRAVEVALSEIERTMGDVYGTPAGHLEFQYTARASYALHKALGAPLGKSFGMTCASPAAIGVVVADAAAKAAVIEPVGYASPAKGTSFSNEVIFTFAGDSGAVRQAVIAARDVGKQLLATLDPTPIKSTTTPYI
>NZ_CP006569.1|WP_025422306.1|2441016_2442525_+|aldehyde-dehydrogenase-EutE
MNDLEITQAVSRVLSKYTKSAPQAQAHTPPALSTAPDRDNIEAIVASVLASRVSAEPAAALAACDGAFATMDEAITAVQHAQIQYRHCSMQDRARFVAGIRQLFLQEEVLQAISRMAVEETGMGNYADKVIKNRVAAQKTPGVEDLVTGAVSGDSGLTLTEYSAYGVIGSITPTTNPTETIINNAIGMLAAGNTVIFSPHPRSRHVSLHCIALINQELARLGAPANLVVTVTKPSIDNTNALINDPRINMLVATGGPAIVKTVMSSGKKAVGAGAGNPPVVVDETANIEKAARDIINGCSFDNNLPCVAEKEVIVVNDVADYLIHRMKKSGAWLLCDKQHIQQLQSLVLNEKGTGPNTAFVGKDARYLLQQIGISVPEEIKVVLIETERDHPFVVHELMMPILPVVRVENVDEAIELAVKVEHGNRHTAMMHSTNVEKLTKMARLIQTTIFVKNGPSYAGLGVGGEGHTTFTIAGPTGEGLTSARTFARHRRCVMVEALNIR

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Crispr_ID: NZ_CP006569_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006569_8

2602956-2603036

Orphan

Consensus_repeat	Method
CACCGCCCGAATAGCGGCAGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006569_8

>merge|NZ_CP006569|8|2602956-2603036|CRISPRCasFinder
CACCGCCCGAATAGCGGCAGAGGGGCTGAGTGTTTACGCCGGCGCTTTGGCACGGCAGCACCGCCCGGATAGCGGCAGAGG

>NZ_CP006569|8|8|2602956-2603036|CRISPRCasFinder
CACCGCCCGAATAGCGGCAGAGG	GGCTGAGTGTTTACGCCGGCGCTTTGGCACGGCAG
CACCGCCCGGATAGCGGCAGAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006569.1\|WP_025422437.1\|2600853_2601765_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP006569.1\|WP_025422441.1\|2605320_2607129_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225914
NZ_CP006569.1\|WP_025422439.1\|2603106_2604054_-\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240633
NZ_CP006569.1\|WP_025422442.1\|2607192_2607876_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP006569.1\|WP_025422431.1\|2590577_2593991_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239160
NZ_CP006569.1\|WP_025422443.1\|2607900_2609265_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273326
NZ_CP006569.1\|WP_071882021.1\|2609736_2610303_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|284781
NZ_CP006569.1\|WP_025422438.1\|2601879_2602875_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369561
NZ_CP006569.1\|WP_025422446.1\|2611628_2612192_+\|alkyl-hydroperoxide-reductase-subunit-C	unknown	unknown	gnl\|CDD\|182423
NZ_CP006569.1\|WP_025422433.1\|2596150_2597071_-\|delta(1)-pyrroline-2-carboxylate-reductase-family-protein	unknown	unknown	gnl\|CDD\|235996
NZ_CP006569.1\|WP_025422429.1\|2587923_2589246_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270451
NZ_CP006569.1\|WP_025422448.1\|2614273_2615533_+\|four-carbon-acid-sugar-kinase-family-protein	unknown	unknown	gnl\|CDD\|225930
NZ_CP006569.1\|WP_025422447.1\|2612271_2613840_+\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942
NZ_CP006569.1\|WP_051440160.1\|2598484_2599687_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP006569.1\|WP_025422434.1\|2597646_2598288_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP006569.1\|WP_025422440.1\|2604176_2605310_-\|mandelate-racemase/muconate-lactonizing-enzyme-family-protein	unknown	unknown	gnl\|CDD\|239432
NZ_CP006569.1\|WP_025422430.1\|2589570_2590473_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176104
NZ_CP006569.1\|WP_148296277.1\|2599900_2600857_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP006569.1\|WP_025422445.1\|2610436_2611459_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|183405
NZ_CP006569.1\|WP_038668500.1\|2594162_2595560_+\|short-chain-fatty-acid-transporter	unknown	unknown	gnl\|CDD\|224942

Protein	Function_ID	Function_description	E-value
NZ_CP006569.1\|WP_025422437.1\|2600853_2601765_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.82119e-69
NZ_CP006569.1\|WP_025422441.1\|2605320_2607129_-\|hypothetical-protein	gnl\|CDD\|225914	COG3379, COG3379, Uncharacterized conserved protein [Function unknown].	3.1627e-09
NZ_CP006569.1\|WP_025422439.1\|2603106_2604054_-\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|240633	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase. Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	4.32564e-143
NZ_CP006569.1\|WP_025422442.1\|2607192_2607876_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	5.50244e-46
NZ_CP006569.1\|WP_025422431.1\|2590577_2593991_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239160	cd02759, MopB_Acetylene-hydratase, The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	1.26626e-100
NZ_CP006569.1\|WP_025422443.1\|2607900_2609265_-\|MFS-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.8234e-124
NZ_CP006569.1\|WP_071882021.1\|2609736_2610303_+\|hypothetical-protein	gnl\|CDD\|284781	pfam07437, YfaZ, YfaZ precursor. This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.	2.29426e-28
NZ_CP006569.1\|WP_025422438.1\|2601879_2602875_+\|alpha/beta-hydrolase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	2.61784e-60
NZ_CP006569.1\|WP_025422446.1\|2611628_2612192_+\|alkyl-hydroperoxide-reductase-subunit-C	gnl\|CDD\|182423	PRK10382, PRK10382, alkyl hydroperoxide reductase subunit C; Provisional.	6.25815e-139
NZ_CP006569.1\|WP_025422433.1\|2596150_2597071_-\|delta(1)-pyrroline-2-carboxylate-reductase-family-protein	gnl\|CDD\|235996	PRK07340, PRK07340, delta(1)-pyrroline-2-carboxylate reductase family protein.	1.64218e-138
NZ_CP006569.1\|WP_025422429.1\|2587923_2589246_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.43886e-111
NZ_CP006569.1\|WP_025422448.1\|2614273_2615533_+\|four-carbon-acid-sugar-kinase-family-protein	gnl\|CDD\|225930	COG3395, COG3395, Uncharacterized protein conserved in bacteria [Function unknown].	2.20248e-149
NZ_CP006569.1\|WP_025422447.1\|2612271_2613840_+\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
NZ_CP006569.1\|WP_051440160.1\|2598484_2599687_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.17884e-70
NZ_CP006569.1\|WP_025422434.1\|2597646_2598288_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.91205e-11
NZ_CP006569.1\|WP_025422440.1\|2604176_2605310_-\|mandelate-racemase/muconate-lactonizing-enzyme-family-protein	gnl\|CDD\|239432	cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).	2.36776e-131
NZ_CP006569.1\|WP_025422430.1\|2589570_2590473_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176104	cd08412, PBP2_PAO1_like, The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily. This family includes the C-terminal substrate domain of a putative LysR-type transcriptional regulator from the plant pathogen Pseudomonas aeruginosa PAO1and its closely related homologs. The LysR-type transcriptional regulators (LTTRs) are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of N2 fixing bacteria, and synthesis of virulence factors, to a name a few. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.41376e-57
NZ_CP006569.1\|WP_148296277.1\|2599900_2600857_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.1112e-21
NZ_CP006569.1\|WP_025422445.1\|2610436_2611459_+\|AI-2E-family-transporter	gnl\|CDD\|183405	PRK12287, tqsA, pheromone autoinducer 2 transporter; Reviewed.	7.65271e-69
NZ_CP006569.1\|WP_038668500.1\|2594162_2595560_+\|short-chain-fatty-acid-transporter	gnl\|CDD\|224942	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism].	1.64944e-129

>NZ_CP006569.1|WP_025422438.1|2601879_2602875_+|alpha/beta-hydrolase
MYSESVNRLLEQWRTSAAPLERALKGEPGADWPEARENYLAALATLFPAPPAVHIADTMLAGQPTSLITPSQAEQPAGFITPPRPGQPTGLAPRSQPHARRVLLYLHGGGYASGGRRGYHGLGGRFARRLNAQVYIPDYRLAPEHPFPAAIDDAFAAYRALLADGAEPASIMLAGDSAGGALVVTLLRKIRDAGLAQPAGGVALSPWADISQSGGSAVSREGRDPLCGVAFLNLLARNYLGAVAATHPDASPVFADVSGIAPVMIQVGENEVMLSDALRLAARLGEQRVRVTLEVWPAMFHVWHLCADVLPEAERAIANAAAFLLGTQADR
>NZ_CP006569.1|WP_025422437.1|2600853_2601765_-|LysR-family-transcriptional-regulator
MEITSLQAFIAVVKAGSFAAAAKKRGLTRSAIGKSVAKLEAHLGVRLFHRTTRSLTLTTDGQLFYERCAQAIQELAEAEALIKQEKPYPKGTLKITLPVTYGRVHILPVVSDFVRRWPEVDVEINFSDAVSDLIEEGFDLAIRLGKPPADTSQLIIRTLARYSSQMVAAPDFLAAKGMPPSVEALDGYDRLMYGTRRAPLPWQLRMPDGDLHTVAGREKVYFDNAEAVRDAALAGMGIALLPEFITRAAVADGRLVPLFSECRTRDVTAYLIYPSKKHLAARIRCFIDVLVAERGDAAVRSPA
>NZ_CP006569.1|WP_148296277.1|2599900_2600857_+|alpha/beta-hydrolase
MITLIRTCYGALLSAALLFAAPAAAQDRFLPPAGFTSAYQTINHVRLHYVKGGQGPLVLLVHGFGQSWYEWRTLMPLLAAQHTVIAVDLPGLGDSAPPVSGYSGAAIADALYRLALHPSQGQPFSLVAHDIGIWNTYPLAVKHPRHIDKVVFMEAPIPDKRLYDFPAFSPQGESLVWHFSFFAAGDNLAETLIAGHEKTFLTHFIRSHATRQAAFTPQLLDGYAAAYAKPSSLHASFEYYRALNISIAQNAVLGQHPLPMPVMAIGGGGHGGMGQFQVDQMRHYATRVTGHVLPGCGHWLPEECPATLNPLVVDFLAR
>NZ_CP006569.1|WP_051440160.1|2598484_2599687_+|MFS-transporter
MTQWPSVKASRIADQGALPVLALLALAMTGFICILTETLPAGLLPQIGAGLHISPALAGQMVTAYAAGSLIAAIPLTLVTRTWPRRQVLLATVLGFLLFNALTAVTSQVAVLLTARFLAGAAAGLAWSLLAGYARRMVPPAQQGRAMALAMIGTPVALSLGVPIGTWLGTLLDWRMSFAAMSLLSLLLMAWIVLAVPNFPGQRDRRQARPGTVLRNPGVQAVLAVVFTWMLAHNILYTYVAPLVTPAGLANRVDSVLLIFGLAALAGIVITGRVIDRHLRRAVLASLSGFALAALVFALNGVSPVLMYAGVAVWGLTFGGAATLLQTALADAAGESADVALSLNVVTWNSAIALGGLAGGLLLTHGGVSTFPPVVILLVLTGLAIAWRASAHGFVAGRRH
>NZ_CP006569.1|WP_025422434.1|2597646_2598288_-|TetR/AcrR-family-transcriptional-regulator
MMRTGRPRTFDREAAVSQAMHLFWEHGYESTSLAQLKAAIGRGITAPSFYAAFGSKEALFREAVDRYLTTYGRVTDPLWQAELPPRAAIETALLRSARMQCEPGHPQGCMVALGVMTACSAANKPLMQPLADSRQRTRSGLQRCLARGVETGELQRNSDIPALTVAFDGFLLGISTLARDGIPLAAIEGGITQIMSLWDNNRAANPPRQAAGQ
>NZ_CP006569.1|WP_025422433.1|2596150_2597071_-|delta(1)-pyrroline-2-carboxylate-reductase-family-protein
MTPDPYQVFDRKQTADLLPFKPLVEALRQAVADYTAGRILSPERMVVPLNNKGVMLSMPAVAPDLAIHKLVNVVPDNRQLGLPTLHGQVAVFDAQNGVPLFVLDGPEVTGRRTAAVSMLGIIALLPEPPREILLIGSGTQSRYHLLAIAALYPACRVWVRGTSAARAQAFCDELRPLHGDLHPCVSDAIPDNVSVVITLTTSQRPVYNAAARAGLLIIGVGAFKPEMAEIGAVTLSGSDIYLDDPDGARHEAGDLIQANIDWRATFSLAQGLTAPPESTRPIVFKTVGTAAWDLAAGRVAKQRLGK
>NZ_CP006569.1|WP_038668500.1|2594162_2595560_+|short-chain-fatty-acid-transporter
MENIAIGVSNWSEKWFPEAYVFAALAVVVVVLAAMAMGVPLASAARGFGDGYWSLIPFTMQMALVAISGYIVAVSPPAAKLIMRLAALPRGAKGAVVLIAAVSLGSSLFNWAISLVFSGLLARAMARRADLTMDYRAAGAAAYLGMGATWALGISSAPAQLMANPASLPTGLLEISGVIPFTDTIFTWQSLLMTLILIIISLWVAYLSAPTGARIRTAADLGVDLTEPSMAVNKPQRPGEWLEYSPLVTLLLALLSVLWLYTEFTSSNPILVISNLNTYNFLFLTLGMILCWRPIRFIRAFSKAVPSVAGVLIQFPLYGGIAFIMTKTVNADGETLSHLLASGFVSVASSESYAAVMGIYSAVLGFFIPSGGGKWLIEAPYVLQAANELRVNLGWAVQVYNAAEALPNLINPFWMLPLLGVLGLRARDIVGFTFTQLIVHLPLVLLLLWLFTATFHYVPPMVPAK
>NZ_CP006569.1|WP_025422431.1|2590577_2593991_+|molybdopterin-dependent-oxidoreductase
MTGKVVKGYCTLCRSRCGTLNHIADDRLIAVSADASHPTGQAMCLKGKAAPELVDSSERLRYPLRRTRPKGAADPGWQRISWDEALAELAGQMAAIKARSGAHAFAFGVTTPSGTPLSDSIDWIERLIRSYGSPNTCYATEICNWHKDVAHTFTFGCGMPTADYPHSDLIMLWGHNPANTWLAQAHAIGEGRRNGARLLVIDPRETALAQQADVWLRIRPGTDAALAMGLANLLLADGEFDAQFIRRWSNAPALVRDDNGQFLRAGDVGLQPADALTYWDRHANAVRVLPRLEAVEGEWDETAAALRGRFHLATDTATLTCRPAFALYARACAAYTPARTAALTWVSTHDLRRAADLLAAAHRVAYHAWSGVAQQTNATQTDRAIACLYALTGSFDAEGGNRIFAKPPYRPVNGLDLIDPRQREKALGYAERPLGPPAQGWIAGRDLYEAILTGKPYAIEGMLAFGTNILVSQGDTALGVEALTKLPFYAHCDLFLNPSAHYADIVLPVNTPWEREGLRIGFEISSRAETLIQLRPQMVSSRGEARSDNDIVFALANRLGLQETFFGGTLEQGWNAMLAPTGLTVACLRAQPGGVTVPVAPRERHYRAIGFATETGKVELYSERLLKHGYPPLPTFDDATLTQPDTRFPYVLTSAKNGFFCHSQHRSLASLRRKAADPVIEIAAALARQKGIAEQDWVRVTTRLGSARFRARLRDSLHPGVLVGEFGWWQDCVPLGQPGMPLQGEGNSHYNGLVDGARRDPISGATPLRAFACDVAREVSHALAPARWQGYRPFIVQQLHQERQDVTRVTLAPADGGHVPAFQPGQHVTLRVALNGEEHAAGEAAVFAVRAYSLIGSALAPDAACYHIAVRHLKETDAQGNSREGAVSAFINRHLRPGDRLELMAPGGHFVIPYRSPRPLVFYAGGIGITPFLSALETAADAGSRAQILLLYANRDPLSHAFDQRIAALQAHLPGLRIIHRYSHHPAEPALEGRLNVSLVADAYFARRALHYLCGPPAMMAAITEQLLAKGVARFAIFQEAFRAPAAAVIASDRPFNIHFQRSGQRHVWTRESGPLLSFAERLGIPLPSGCRVGQCESCAVRILQGEVKHLHAAAPDEPDTCLTCQAIPISDLTLDA
>NZ_CP006569.1|WP_025422430.1|2589570_2590473_-|LysR-family-transcriptional-regulator
MRPTVRQLQHFIALAHCGQVSKAALRCHISQSSMTASLQRLEQMLGSALFWRGPAGIVLTPAGQRFLHHAQRILADLDQAMDEISQTSPALQGPVRIGLTETVSAYLMASLIAKIQQNFPLLDVHYGEHDRQTLEAMLETGQLDLALMLTANISPSEHLAYDVLTRSPRMLWAQPEHPLILAGRVTLADVAAHDYILLDMDEHITVLDRYWSSRGLRPRITFQSRSIEAVRSLVAAGEGVSILSNIVYRAWSLEGQRIARRPVSDSVPTMDIGVAWCARRQTGQAYRALIDFIRTLIPAA
>NZ_CP006569.1|WP_025422429.1|2587923_2589246_+|ABC-transporter-substrate-binding-protein
MHLPLTQRLPALTFIISLTLCVSARAKENIDFMFPAPVDGKLTMEMTRVIKKFNDTQDEVAVRGIFTGNYDTTKIKAETAQKAGQPPALVIMSANFTTDLALKDEILPMDELFRFGSDKASTFLTREFWPAMQQNAQVMGVTYAIPFHNSTPILYYNKTLFEQAGIRQPPQDWRELLEDAKKLTDKSKGQWGIMLPSTNDDYGGWIFSALVRANGGDYFNQSYPGEVYYNTPTTVGALRFWQNLIYRDNVMPSGVLNSKQISAAFFSGKLGMAMLSTGALGFMRENTKDFELGVAMLPAKQQRAVPIGGASLVSFKGISDGQKKAAYRFLSYLVSPEVNGAWSRFTGYFSPRKAAYDLPVMKAYLAHDPRAAIALAQLKYAHPWYSTYETVGVRKAMEDQLAAVVNDKSVTPEAAAKAAQEKADSLLQPYVAQTALAPVE
>NZ_CP006569.1|WP_025422439.1|2603106_2604054_-|2-hydroxyacid-dehydrogenase
MTKTLHVLIAAETLPASLLDAVKRTYTVSTGDAARDPAWSATYGAEIDVILTNGVTGVTAELLRRLPKVKLIASNGVGVDKIDLAAARARGIVVTNTPSVLNDCVADHAMALLLDISRRVSEADRYVRAGLWRTRGRFPLGTKIGGKVCGIAGLGNIGRAFAARAAAFGMDIHYYNPHSQPAVPYRRHDSLRSLAAAADYLVLTLPGGDATRHAVEETVLAALGPRGYLINVARGSVVKESALLDALDRQLIAGAALDVFADEPNVPPALLDKANVVLSPHIASATRETMAAMADLVLQNLHAFARGEAVLTPVN
>NZ_CP006569.1|WP_025422440.1|2604176_2605310_-|mandelate-racemase/muconate-lactonizing-enzyme-family-protein
MKITSVTTHLLSAKLSQPFAYSRARYDTRTAMLVEIMTDEGITGWGECYGPARMTKAVVDELAGMIIGSDALNSEFIWQDLYARLRDHGQKGLLIEGLSGIDIALWDIRGKYFNVPAYQLLGGAMRTEVQAYATGLYRRDSGDPLSYLAEEAVGYVEQGFKAMKLKVGFGVREDIRVTQTLRDTLGPDVALMIDANHAYDAVAAIALGRAVEELDIGWFEEPVPPEDLAGYRRVKEAIAIPLAGGECEFTRYGFRDVLSTGAMDIIQPDICAAGGLTECKKIADMAQAFGVRTNPHVWGSGIGIAASLQWMALIPTQTPLSLTPVQPLLEFDQTEHPIRQAILQQPIVHHHGRVAIPSGPGLGIDVDRRALAAFAVA
>NZ_CP006569.1|WP_025422441.1|2605320_2607129_-|hypothetical-protein
MRKVIVFGVDGLSMPLLKRYAAQGALPNIARMLQQGAATELLPFISAWGDVNWVAFMAGQGLGTAWRGQALPADNHQTGNLLDQMTRQGLKAALVHFPETVVADAGHFSFAPYWGRSAPWAAEHFKPMGHTTRYQARTGDKHIKQQKLGWPPNGTLAYHDKGAWQPLEKGADGGYALTLQGQRGNTLTLPLGEQEGKPVIWIGDQAVALAEGEWSPWCSLRALNVSGSVRFYLGCYRPERDEVEILQAQVTDPDQLCGASEQARALLAHAGPFFSKWVVKASPQEDYPQATYQEGDEQSLWLADTALTLTQQQGYALWATVHRLVDESHHNCLGQCDPASPFFDPAQAARYDAVMRDCYQILDKTMGKLMAQMDDETVLMLASDHGAVPNAYMCDIYRYLAKHQLVVLDEQLKPDMARSQVYLKDERGGLEIFVNLAGREATGIVSPADYDAVCAKTLHALGSWHVLEQGQLRNAVSLALLKDDAAGIGFWGPCAGDIVFAYNAGFVWGVSRGGEDICPVEVPGANHGPQKPTAATAMSSNYGALVMMGAGVRAGYYHDRATLGPYTMVDPAATIAHLLGLPLATLDGRVMHSLLADGHTHP
>NZ_CP006569.1|WP_025422442.1|2607192_2607876_-|GntR-family-transcriptional-regulator
MSTAETPRIKQSLSFIAYEKIKAMILNMELQPGSSLTEMWLIGKLDMSRTPIREALYRLQQERFVELTRHKGWYVSEIKLRDIQELFVIREALEGICARHATARISDEALTKMEAYLDSLEAPLLANEEAVVDPGDTLHDLIFTYADNQLINTMMAIHLERLRMFHVIASNLPGRKLQSWREHREILYALKARDEDRVEQTMRRHIRSSLDSLLQDLLQKNQTLNAL
>NZ_CP006569.1|WP_025422443.1|2607900_2609265_-|MFS-transporter
MQWENKETVAAASSATGAKKTNVRWMVVAVLFFVTLINYADRASISLAGPGMAKELGLSVVDMGFIFSAFGWAYVIFQLPGGWLLDRFGSKMIYSLSILLWSLFTLMTGLAGFVTGATAVMVIFILRFLVGAAESPSFPANSRIVASWFPASERGTAAAIFNSAQYGSTVFFAPLMGWLAHTYGWHSVFTVLGLIGIAFLPVFRKLVHSPNRHTMVNAAELAYMEQGGALVNIDPDKQERAAHKGPRLSYLKQLLSSRMMLGIYFAQYCLNAIGFFFITWFPVYLVQEKHMSIMKAGMVAAIPAVCGFVGGIMGGFVSDMLIRRGMSLSLARKIPIVGGMVLCCIMVLCNYTDSESAVIFIMAMSFLGKGIGGMGWTVNADTAPKEIAGLSGSVLNTFSNSSSITTPVITGYILQVTGSFHAVLWFVIAHAVVVMLCYLFVVGKIKRFILTDTP
>NZ_CP006569.1|WP_071882021.1|2609736_2610303_+|hypothetical-protein
MRVTTTTRPALIGCALMAMLSIPAARAMDGMVSTGTHFTDVNIGLGQQSSGLYINGGWVKNNQNGREVAGAETGINLPVGPAMFNLGVQANYIKGSTGAGEGVVFPVGAGVKLPLVHGVGVYASAYSASRQLSNSAKNYLDVDGGVSWTPIDLVTLKAGYRYIGMDGKNNRPNERLVEGPYVAGQLNF
>NZ_CP006569.1|WP_025422445.1|2610436_2611459_+|AI-2E-family-transporter
MEKATLSPDRACVNLACLILFILGVHLAAPVLVPLLVALCLTLVLMRPINGLVSLKIPRALAVIAVSGGILLALLMTLGTIMAALPELRQLSSYLPLLLADRLQGVPALLQRVGMTLTVESLWAIFDPAQLFTLATRAVGRISGMLTGIVMVFMLVVFMLLDAPALSVKCRRLLRCPSPQWTALQQGLDSVTRYLALKTLVSLFIGLAVWGALLLLNVKFAFIWGVLALVLNFIPLVGSIIAAIPPLLLAFLFNGPATGLGLLAALLLINLVFSFLWEPVLMGRRLDLSLCTVFLSLLVWQSLLGLTGALLAVPLTLAVKLALELTPGGRGVALLMSGKD
>NZ_CP006569.1|WP_025422446.1|2611628_2612192_+|alkyl-hydroperoxide-reductase-subunit-C
MSLINTKIKPFSNQAFKNGEFIQVTDKDVEGKWSVFFFYPADFTFVCPTELGDVADHYAEFQKLGVDIYSVSTDTHFTHKAWHGSSETIAKIQYAMIGDPTGTLTRNFENLREDEGLADRGTFIVDPQGIIQAIEVTAEGIGRDASDLLRKVKAAQYVASHPGEVCPAKWQEGDATLAPSLDLVGKI
>NZ_CP006569.1|WP_025422447.1|2612271_2613840_+|alkyl-hydroperoxide-reductase-subunit-F
MLDTTMKTQLKAYLEKLTKPVELVATLDEGAKSAEIRGLLTDIADLSDKVSWREDNQLPVRKPSFRVANPGVDHGPRFAGSPLGHEFTSLVLALLQTGGHPSREAQSLLDQIRQLDGEFHFETYYSLTCHNCPDVVQALNLMAILNPRIHHTAIDGGAFQNEIQERNIMGVPAVFMNGESFGQGRMTLSEIVNKIDTGAAARAAQALNQREVYDVLIVGSGPAGAAAAVYSARKGIRTGLLGERFGGQVLDTVDIENYISVPKTEGARLATSLKAHVDEYDVDVIDVQSASRLIPAAAPGQPHQIETASGARLTARSLIIATGARWRNMNVPGEELYRTRGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGLVEHVTLLEFAPAMRADAVLQAKLRSLNNVDILLNAQTLEVTGDGTKLTGLRYKDRVSHGEHELAVAGIFVQIGLLPNTQWLEGTVERNQTGEILIDAKCETSVKGIFAAGDCTSVPYKQIIIAAGEGAKASLSAFDYLIRNTPVV
>NZ_CP006569.1|WP_025422448.1|2614273_2615533_+|four-carbon-acid-sugar-kinase-family-protein
MAFRLGVIADDFTGATDIASFLAAAGWRVTQVNGVPTQALSTPADAVVVSLKTRSCPAQEAVSLSLQSARWLREQGCEQLYFKYCSTFDSTAQGNIGPVTDALLAETGQTMAVLCPALPVNGRTVVHGYLFVFDQLLSESSLRHHPVTPMTDANLLRLMDAQSAGQTGLLPLASIRQGQAAIRQRLEVLQQQGCRYVVADTLDENDLAALAAALPASVLLTGGSGLGGAIAAHATGQHAAAQTRETPPRAGRGVVLSGSCSQMTNRQVAWYQQHAPARALDIARCRQNAEDYAREMAQWVSAQPDFPAPLLYATDAPEVVQRLRQRYPGEDIGAMIEACFARIATLLCEQGFSKFIVAGGETSSLIAQKLGVTAFTLGDTIAPGVPWVRDLHRPLWLALKSGNFGTTDFFSKAQELYHD

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Crispr_ID: NZ_CP006569_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006569_9

3156200-3156333

Orphan

Consensus_repeat	Method
CCGCTGCGGGCACCGCCGTTGCCGGA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP006569_9

>merge|NZ_CP006569|9|3156200-3156333|CRISPRCasFinder
CCGCTGCGGGTGCCGCCGTTACCGGCATAATTGCCGCCACGGCCGCTGCGGGCACCGCCGTTACCGGAAGCACCACCGCTGCGGGCACCGCCGTTGCCGGAAGCGCCGCCGCTGCGGGCACCGCCGTTGCCGGA

>NZ_CP006569|9|9|3156200-3156333|CRISPRCasFinder
CCGCTGCGGGTGCCGCCGTTACCGGC	ATAATTGCCGCCACGG
CCGCTGCGGGCACCGCCGTTACCGGA	AGCACCACCGCTGCGGGCACCGCCGTTGCCGGAAGCGCCG
CCGCTGCGGGCACCGCCGTTGCCGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006569.1\|WP_025422899.1\|3161009_3161255_-\|molybdopterin-synthase-sulfur-carrier-subunit	unknown	unknown	gnl\|CDD\|182985
NZ_CP006569.1\|WP_025422888.1\|3150257_3150971_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223836
NZ_CP006569.1\|WP_025422903.1\|3164259_3166269_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP006569.1\|WP_025422895.1\|3157890_3158643_-\|L-cystine-ABC-transporter-ATP-binding-protein-YecC	unknown	unknown	gnl\|CDD\|183063
NZ_CP006569.1\|WP_025422892.1\|3154090_3154897_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369778
NZ_CP006569.1\|WP_025422889.1\|3150960_3151719_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP006569.1\|WP_025422898.1\|3160517_3161009_-\|molybdopterin-synthase-catalytic-subunit-MoaE	unknown	unknown	gnl\|CDD\|182642
NZ_CP006569.1\|WP_025422904.1\|3167125_3167836_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274567
NZ_CP006569.1\|WP_025422891.1\|3152548_3153376_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270407
NZ_CP006569.1\|WP_025422886.1\|3149404_3149887_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP006569.1\|WP_025422897.1\|3159655_3160366_-\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414
NZ_CP006569.1\|WP_025422893.1\|3155016_3155964_-\|tRNA-dihydrouridine(16)-synthase-DusC	unknown	unknown	gnl\|CDD\|236713
NZ_CP006569.1\|WP_025422902.1\|3163121_3164033_+\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	unknown	unknown	gnl\|CDD\|211689
NZ_CP006569.1\|WP_025422883.1\|3144656_3147095_-\|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family	unknown	unknown	gnl\|CDD\|274418
NZ_CP006569.1\|WP_025422885.1\|3148395_3149307_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP006569.1\|WP_025422884.1\|3147316_3148090_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|184516
NZ_CP006569.1\|WP_025422890.1\|3151715_3152537_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP006569.1\|WP_025422900.1\|3161251_3161734_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
NZ_CP006569.1\|WP_025422901.1\|3161753_3162740_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NZ_CP006569.1\|WP_025422896.1\|3158639_3159638_-\|D-cysteine-desulfhydrase	unknown	unknown	gnl\|CDD\|179673

Protein	Function_ID	Function_description	E-value
NZ_CP006569.1\|WP_025422899.1\|3161009_3161255_-\|molybdopterin-synthase-sulfur-carrier-subunit	gnl\|CDD\|182985	PRK11130, moaD, molybdopterin synthase small subunit; Provisional.	1.23182e-48
NZ_CP006569.1\|WP_025422888.1\|3150257_3150971_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.352e-46
NZ_CP006569.1\|WP_025422903.1\|3164259_3166269_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP006569.1\|WP_025422895.1\|3157890_3158643_-\|L-cystine-ABC-transporter-ATP-binding-protein-YecC	gnl\|CDD\|183063	PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional.	2.65304e-172
NZ_CP006569.1\|WP_025422892.1\|3154090_3154897_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369778	pfam08242, Methyltransf_12, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	8.91228e-05
NZ_CP006569.1\|WP_025422889.1\|3150960_3151719_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.59632e-50
NZ_CP006569.1\|WP_025422898.1\|3160517_3161009_-\|molybdopterin-synthase-catalytic-subunit-MoaE	gnl\|CDD\|182642	PRK10678, moaE, molybdopterin synthase catalytic subunit MoaE.	9.67785e-85
NZ_CP006569.1\|WP_025422904.1\|3167125_3167836_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|274567	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	3.21157e-90
NZ_CP006569.1\|WP_025422891.1\|3152548_3153376_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270407	cd13689, PBP2_BsGlnH, Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold. This group includes periplasmic glutamine-binding domain GlnP from Bacillus subtilis and its related proteins. The GlnP domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.15932e-111
NZ_CP006569.1\|WP_025422886.1\|3149404_3149887_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	7.7791e-14
NZ_CP006569.1\|WP_025422897.1\|3159655_3160366_-\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	2.99826e-72
NZ_CP006569.1\|WP_025422893.1\|3155016_3155964_-\|tRNA-dihydrouridine(16)-synthase-DusC	gnl\|CDD\|236713	PRK10550, PRK10550, tRNA dihydrouridine(16) synthase DusC.	0
NZ_CP006569.1\|WP_025422902.1\|3163121_3164033_+\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	4.46585e-109
NZ_CP006569.1\|WP_025422883.1\|3144656_3147095_-\|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family	gnl\|CDD\|274418	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.	0
NZ_CP006569.1\|WP_025422885.1\|3148395_3149307_-\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.10311e-34
NZ_CP006569.1\|WP_025422884.1\|3147316_3148090_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|184516	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase.	1.26187e-136
NZ_CP006569.1\|WP_025422890.1\|3151715_3152537_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	2.8807e-135
NZ_CP006569.1\|WP_025422900.1\|3161251_3161734_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	1.79016e-98
NZ_CP006569.1\|WP_025422901.1\|3161753_3162740_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	0
NZ_CP006569.1\|WP_025422896.1\|3158639_3159638_-\|D-cysteine-desulfhydrase	gnl\|CDD\|179673	PRK03910, PRK03910, D-cysteine desulfhydrase; Validated.	8.95338e-180

>NZ_CP006569.1|WP_025422893.1|3155016_3155964_-|tRNA-dihydrouridine(16)-synthase-DusC
MRVVLAPMEGVLDALVRELLCEINDYDLCITEFLRVVDGLLPEKSFYRLCPELRRDSRTPDGTPVRVQLLGQSPPWLAENAWRAAALGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQAAKAIRAAVPADLPVSVKVRLGWDSSSRSLDIADAVEQAGASEIAVHGRTKADGYRAESIDWPAIAAIRQRLRIPVIANGEVMDWRSGQSCLAVSGCQSLMIGRGALSVPNLSRVVKDRAPPLCWSQVVVLLQKYSRMEKQGDTGLYHVARIKQWLNYLRKHYPEAGELFSTLRALKTSSAIGDVLCRLSDQAQ
>NZ_CP006569.1|WP_025422892.1|3154090_3154897_-|class-I-SAM-dependent-methyltransferase
MKDNALRKTVILQNLPLHLPGLEISPLFRPATDKALHNVCYTDYTSAEDSRQKHAHYEHDDIVDIDFIWHPHATLESCVPGHQRFDWAVASHVLEHVPDPLGWILEVLAVLNDGAIFSLVLPNKRYCFDRFRQTSSAAQWLQWWLTRQRIPAPQQLYDFLRNCTSDDGEMYERLKDLTPEAYQNTRCPHYTQQQALEFVLNAWTTGHYFDAHCSVFTPESAAALLAEVVELGILNVAVSAPQQYEDEFYIQLTKLGEPALPHPGPGAS
>NZ_CP006569.1|WP_025422891.1|3152548_3153376_-|ABC-transporter-substrate-binding-protein
MAYFRQNSRLIRAAGALLMLSLAPLAARADQLADIQRAGVVRVATFDANPPFGAIDAKTHRIVGYDVDFARAIADALGVKLALVPTNPANRIPLLQSGKADLIIADITITPERAQVIDFSTPYFVTGQQFLVPAASSDKLEDYASARIGAVKGTTGEQALHHRFPNARVLAYDDIPLALSALRNGNVKAITQDSTILAGLLAGAPDKASYKILPALLSEEQIGIGVKKGEDALLNAVNQQLIALEHSGEAQRIYNSWFGPQSPAPQPRSFTITSH
>NZ_CP006569.1|WP_025422890.1|3151715_3152537_-|amino-acid-ABC-transporter-ATP-binding-protein
MVKSLYVPAATLPPGAGDVPVAVEFRRVSKVFGQQPVLRDINFHVNAGEVVAICGPSGSGKSTLIRLINQLETLSSGEIFVHQRATAGLRGRRLRALRTGIGFVFQQFNLYSHLTALDNVALALIKIQKLSVAAAHQHAREKLRQVGLADKAQHFPHQLSGGQQQRVAIARALATDADIILFDEPTSALDPEMIGEVLAVMRDLAGSGMTMMVVTHEMQFAREIADRVVFMDGGEILEQAEPALFFTRPQHPRAQRFLERVLSPLGVGEPTPL
>NZ_CP006569.1|WP_025422889.1|3150960_3151719_-|amino-acid-ABC-transporter-permease
MIWHPDWAGVLSGQPLAWIGTGFVTTLLVTLVGSLLATVMMLLLLALRMMPGRSGRLLVAGWVSLFRNTPLLVQLFFWYFAAWSALPVEWRDYLADDHRWATLPGNVPWLTPEFICAAWGLAVFSAAYLLEELQAGLNALPAGQREAAIAQGFSRLAMLRYILLPQGVRNAWQPLVGQYLNLMKLSSLASAIGFGELTYYISQIESYNAHALEGFAVGTALYLLLGLAMGAILLRLGPRPPRPGGREAGHEL
>NZ_CP006569.1|WP_025422888.1|3150257_3150971_-|ABC-transporter-permease-subunit
MNFNWAVVQDNLTYLLWGRVAEGEPGGLLLTILIALAAGVIALALGVLLAALAWRYGGWTRRLLFVWADLIRGIPLIFVIFWLYFLLPVAFGHSLPGAVTVTLALAWFTSAAVMHATLAGLRALPTGQVEAGLASGLSHWHVLRLILLPQAWPNLLPSWTGLLTSLIKDTSLAFIVNVPELTTVAGQVNSRLQIYPAEIFLLVGALYYVLCASLTALAAWSGRSAGLRRGGERRPGA
>NZ_CP006569.1|WP_025422886.1|3149404_3149887_+|MarR-family-transcriptional-regulator
MNQDHVDRVLEQWRSQRPDLDCLPMGLVGRLARMNNLIGAQVNALHARAGLEPVEFDILATLRRSGEEVTPTRLYQTLMLSSGAMSVRLDKLLARGLIYRQPHEHDRRSCKVGLTDAGLALIDSAMTAHVKNEQRLLAPLDVAQRQQLTALLRLWLLANE
>NZ_CP006569.1|WP_025422885.1|3148395_3149307_-|EamA-family-transporter
MPILLALLAPILWGSTYATVGLFLQEQSPVWVAVWRALPAGILLLMIHPTKPPLPAKKMLALSFCNIAAFFLLLFIAAYRLPGSIAGTLSATMPLQVMLLRWLQEGKRPSWWMALLSLAGIAGVALLFNPSSSPDPVGVAAALAATLLIAQSTLWMSRWQYRDALALTAWQLLLGGMMLLPVALTLTGPPALPRPHAWPGLIWLVLANSALAYWCWVWALNRFGPAVMSIVSLLNPLSAVLLGVMLLPERLSWPQWLGIALILLAVLLMKIPTAPRRPVRAKAVRGVPPAAAADRPEGSSKQR
>NZ_CP006569.1|WP_025422884.1|3147316_3148090_+|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase
MTPATTATAEKRLVIVRHGESLWNRENRFTGWTDVKLTERGRIEAIEAARLLKQHGYRFDFACTSLLVRAVHSLWLLLDELGQSWLPEEKSWRLNERHYGALEGLNKAVTAERYGHEQVMAWRRGYRAAPPPLLPDDPRHPGRDARYRRLAVASQPLSESLAATEQRVINYWREVIVPRLRRGEHVLLVSHSNVIRALVKHLDGLEEDALTALYIPTGVPIVYEFDDKIAPRQRYFLGDEQDIANRIAAVIRTGSKK
>NZ_CP006569.1|WP_025422883.1|3144656_3147095_-|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family
MLRRLFSLPGLTGLLICVCGLFFLVVGLWLLSLGGSAYYLPAGILLSVSGFLIIERRILGLWIYLLTFVLTALWALYEVGLDGWKLMPRLLVLAVLGLWCSMPFITRPLTLSRRQRVLAAVAGLFYLLVGAGVIGAGYITSERLYVQHAPLPAAAAAAAAETETDRTGRNEWRHYGRTPAGERYSPLTQLTPDNVAQLAPAWAIHTGDVMQPGEDKKGREFNFEATPIKVANRLYLCTPHRQVLALNATTGKTLWTYDPHNDTRANEYLACRGVAYYQSPTPTNAPCDRRIISTTADAKLIALDADTGRLCQDFGAGGRVNLTDLMGKVPPGFHFITSQPLVVNDRVVLGGWIYDNQARGEPSGVVRAFDPQSGKLAWAWDMGRSDPTAPLKPGETYTRGTPNGWGTYTADPALGLVYIPLGNATPDYYGAQRRPFDDKYSSAIVALDLATGKERWHFQTVHHDVWDFDLPIGPSLVDLPQPGGGTVPALVQTTKMGQLFLLDRRTGKPLAQVEERPVPQADPFPGERLSPTQPYSTGMPTFAPANLTEKDLWGATPFDQLWCRVQFRRFGYQGQYTPPGLGTRIAYPAFDGVMDWYGASIDPARHVLIANTSYIPFIAEGVTEQKALRRGLMQPWAGWESNQPYPKPKEFAVGPQYGTPYAEIVRPWLSPLGAPCNAPPWGKLAAIDLQSRKISWERPVGTTRDMNILNTHTNAALPTGIFTMGGNIITAGGLIFMGATADDYLRAFDEASGKELWRGRLPAGGQATPITYLGADGRQYVVIAAGGHGGLGTRTGDSVMAWALPARRAAGK
>NZ_CP006569.1|WP_025422895.1|3157890_3158643_-|L-cystine-ABC-transporter-ATP-binding-protein-YecC
MSAIEVKGLVKSFNDHRVLNGIDLAVNPGEVLAIVGPSGSGKTTLLRSINLLETPDGGSIQVGDITIDANRPLNGQKGQIRALRQQVGFVFQNFNLFPHRSVLDNIIEGPLVVKKEPREEVVARARELLAKVGLSGKEQAFPKRLSGGQQQRVAIARALAMRPAVILFDEPTSALDPELVGEVLSTIRALAEERRTMVIVTHEMGFARDVADRAIFMDEGNIVEQGPAREVFAHPGHERTRLFLNKFLGA
>NZ_CP006569.1|WP_025422896.1|3158639_3159638_-|D-cysteine-desulfhydrase
MCDLAQRLAAFPRLDIIGPPTPLEHLPRLSSFLARDIFIKRDDLTPLGLGGNKLRKLEFLAADALRQGADTLLTAGAIQSNHVRQTAALAAKLGLHCVALLENPTGTDDGNYLTNGNRLLLDLFQCEVILCEALTQPVQQLADAALRLEAQGFRPYVVPVGGSNALGSLGYAGCALEIAHQCQGVIQPAAVVVPSGSGGTHAGLAVGLSAVLPETALVGVTVSRRAEQQRPLIAGLIAQASERLSQAPPVADISLWDEYYAPGYGVANDEGREAIALLARLEGIVLDPVYTGKAMAGLIDGLDRGRFPDGPLVFVHTGGAPALFAYHHLETR
>NZ_CP006569.1|WP_025422897.1|3159655_3160366_-|Bax-inhibitor-1/YccA-family-protein
MDRFPRSQGSIVERANSAVQPFMAQVYGWMTCGLLLTAFVAWYASRTPVLLQFIFSSQITFFGLIIAQLALVFVISGMINRLSGAVATSLFMLYSALTGLTLASIFIVYTASSIASTFVVTAGMFGAMTLYGYTTKRDLSSFGNLLFMALIGIVLASLVNIWLKSTALMWAVTYIGVLVFVGLTAYDTQKLKNMGAQLSLENKDQFRKYSIVGALSLYLDFINLFLMLLRIFGNRR
>NZ_CP006569.1|WP_025422898.1|3160517_3161009_-|molybdopterin-synthase-catalytic-subunit-MoaE
MDATLIEVGTADFDVAALYAWLSASDTDGAVVTFTGKVRNHNLGADVSTLTLEHYPGMTEKALAEIAAQARARWPLTRVALLHRVGELGAGERIVFVGVSGAHRAAAFSAAEYMMDLLKTRAPFWKRETTPAGSRWLDARASDQREAERWREDLTPGETDGIG
>NZ_CP006569.1|WP_025422899.1|3161009_3161255_-|molybdopterin-synthase-sulfur-carrier-subunit
MITVLFFAQVRELTGVERLTLEAGFPTVEALRQALAGRGDRWALALEPGKLLAAVNQALVPVDHPLGAGDEVAFFPPVTGG
>NZ_CP006569.1|WP_025422900.1|3161251_3161734_-|cyclic-pyranopterin-monophosphate-synthase-MoaC
MSQLTHITERGDAHMVDVSAKADTVREARACAYVTMAPATLAMILDGQHHKGDVFATARIAGIQAAKRTWELIPLCHPLLLSKVEVLLTADTERHRVRIEALCRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFTGDDA
>NZ_CP006569.1|WP_025422901.1|3161753_3162740_-|GTP-3',8-cyclase-MoaA
MSQLIDAFERRFYYLRLSITDVCNFRCTYCLPDGYRPQGTRNTGFLTLDEIRRVTRAFAELGTEKVRLTGGEPSLRRDFTEIIATVRANPAIRTVAVTTNGYRLARDVAAWRDAGLTALNVSVDSLDARQFQAITGQDKFHQVMAGIDAAFEAGFDKVKVNTVLLRDVNDIHLDTFLAWIKPRPLQLRFIELMETGEGNALFRERHVSGELIRQRLEQRGWRCQPRGRTDGPALVFRHEDYRGEIGLIMPYAKDFCASCNRLRVSSVGKLHLCLFGDGGIPLRDLLESDGALEALKTRIAGGLNHKKQTHFLHQGNTGITRNLSYIGG
>NZ_CP006569.1|WP_025422902.1|3163121_3164033_+|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK
MRNRTLADLDQVVALGGGHGLGRVMSALSFLGSRLTGIVTTTDNGGSSGRIRQSEGGIAWGDTRNCLNQLIAEPSIASAMFEYRFGGQGELAGHNLGNLMLKALDNLSVRPLEAINLIRNLLKVNASLIPMSEQPVDLQATALSGDTVYGEVAIDRLNELPLQLKLTAPVPATREALLAIAGADLIIIGPGSFLTSLMPLLLVEDLTQALRRTPAPMIYLDNLGRELSVAAANMTLAQKVRMMEEAIGREKVIDGVIVGPGTATDDLAERTIIQRPLAADDEPHHHDRGLLRQALDLALQSLG
>NZ_CP006569.1|WP_025422903.1|3164259_3166269_-|excinuclease-ABC-subunit-B
MSKAFKLVSSFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLAPNKTLAAQLYGEMKAFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVIVVASVSAIYGLGDPDAYLKMMLHLTRGMIVSQRSIVNRLSELQYTRNDQAFQRGTFRVRGEVIDIFPAESDEVALRVELFDDEVERLSLFDPLTGHVDQEVPRYTIYPKTHYVTPRERLVQAMEDIKVELAERRQMLLANGKLLEEQRLSQRTAFDLEMMNELGYCSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPMKFEEFAALAPQTIYVSATPGPYELEMCGNEVIDQLVRPTGLLDPQIEVRPVTTQVDDLLSEIRRRVQVNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIETVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDKITPSMARAIEETERRREKQHAYNLANGIVPQALNKQIADIMELGQSPAHAKHKKRKAMEAAAKYGDLTPKALEQKIRELETRMQQHAQNLEFEEAASVRDQIHALREQFIAVS
>NZ_CP006569.1|WP_025422904.1|3167125_3167836_+|ABC-transporter-ATP-binding-protein
MLRMHAVNQFYGPRQILRDIHLELPHGQCTCLLGRNGVGKTTLINCIMGHVPVSSGSVTWQLRGEEAQDLLAHPAEARASLGIGYVPQGRQVFSQLSVEENLHVALLAGRNHTRQVPEMVHDLFPFLYAMRQQRAGELTAGQQQQLAIARALMPKPELLILDEPTGGLLPAAAQAFGDILRRMQHDFGLTLLLVEQQLPFGVHTGDRYCLLEGGRNVAQGSLDEQDNALIQSYLAS

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Crispr_ID: NZ_CP006569_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006569_10

3383048-3383139

Orphan

Consensus_repeat	Method
CCAACAGCAGCGCCAGCACCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006569_10

>merge|NZ_CP006569|10|3383048-3383139|CRISPRCasFinder
CCAACAGCAGCGCCAGCACCGCCATACCGGCTACCACCGACCAGAGCAGCGGGCTTGGCCCCACCAACCACAGCAGGAGCCCCAGCAGCAGC

>NZ_CP006569|10|10|3383048-3383139|CRISPRCasFinder
CCAACAGCAGCGCCAGCACCGCC	ATACCGGCTACCACCGACCAGAGCAGCGGGCTTGGCCCCACCAACC
ACAGCAGGAGCCCCAGCAGCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006569.1\|WP_025423114.1\|3386447_3387302_+\|co-chaperone-YbbN	unknown	unknown	gnl\|CDD\|225660
NZ_CP006569.1\|WP_025423105.1\|3375801_3376521_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP006569.1\|WP_038668653.1\|3388472_3388931_+\|NfeD-family-protein	unknown	unknown	gnl\|CDD\|224501
NZ_CP006569.1\|WP_025423109.1\|3379315_3381547_-\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|377178
NZ_CP006569.1\|WP_025423107.1\|3377315_3377825_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
NZ_CP006569.1\|WP_025423100.1\|3371033_3372194_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NZ_CP006569.1\|WP_025423113.1\|3385619_3386396_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181198
NZ_CP006569.1\|WP_025423111.1\|3384298_3384985_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182569
NZ_CP006569.1\|WP_025423115.1\|3387558_3388476_+\|SPFH/Band-7/PHB-domain-protein	unknown	unknown	gnl\|CDD\|223407
NZ_CP006569.1\|WP_025423101.1\|3372472_3373345_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|236760
NZ_CP006569.1\|WP_025423104.1\|3375296_3375791_+\|peptidylprolyl-isomerase-B	unknown	unknown	gnl\|CDD\|182734
NZ_CP006569.1\|WP_025423108.1\|3377821_3378892_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP006569.1\|WP_081730516.1\|3390264_3391293_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|287960
NZ_CP006569.1\|WP_025423117.1\|3389161_3389584_-\|Cu(I)-responsive-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182320
NZ_CP006569.1\|WP_025423103.1\|3373646_3375032_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP006569.1\|WP_025423102.1\|3373347_3373560_+\|ribosome-associated-protein-YbcJ	unknown	unknown	gnl\|CDD\|183166
NZ_CP006569.1\|WP_025423119.1\|3394424_3395225_+\|conjugal-transfer-protein-TraB	unknown	unknown	gnl\|CDD\|226258
NZ_CP006569.1\|WP_025423120.1\|3395303_3395786_+\|Cys-tRNA(Pro)/Cys-tRNA(Cys)-deacylase-YbaK	unknown	unknown	gnl\|CDD\|182634
NZ_CP006569.1\|WP_025423106.1\|3376659_3377082_-\|ASCH-domain-containing-protein	unknown	unknown	gnl\|CDD\|119345
NZ_CP006569.1\|WP_162149617.1\|3384955_3385591_+\|multifunctional-acyl-CoA-thioesterase-I/protease-I/lysophospholipase-L1	unknown	unknown	gnl\|CDD\|182521

Protein	Function_ID	Function_description	E-value
NZ_CP006569.1\|WP_025423114.1\|3386447_3387302_+\|co-chaperone-YbbN	gnl\|CDD\|225660	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones].	5.83183e-107
NZ_CP006569.1\|WP_025423105.1\|3375801_3376521_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	1.13248e-145
NZ_CP006569.1\|WP_038668653.1\|3388472_3388931_+\|NfeD-family-protein	gnl\|CDD\|224501	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	1.91254e-33
NZ_CP006569.1\|WP_025423109.1\|3379315_3381547_-\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|377178	pfam03971, IDH, Monomeric isocitrate dehydrogenase. NADP(+)-dependent isocitrate dehydrogenase (ICD) is an important enzyme of the intermediary metabolism, as it controls the carbon flux within the citric acid cycle and supplies the cell with 2-oxoglutarate EC:1.1.1.42 and NADPH for biosynthetic purposes.	0
NZ_CP006569.1\|WP_025423107.1\|3377315_3377825_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	1.46594e-85
NZ_CP006569.1\|WP_025423100.1\|3371033_3372194_+\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	9.10192e-46
NZ_CP006569.1\|WP_025423113.1\|3385619_3386396_+\|SDR-family-oxidoreductase	gnl\|CDD\|181198	PRK08017, PRK08017, SDR family oxidoreductase.	1.18152e-167
NZ_CP006569.1\|WP_025423111.1\|3384298_3384985_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|182569	PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional.	1.00383e-147
NZ_CP006569.1\|WP_025423115.1\|3387558_3388476_+\|SPFH/Band-7/PHB-domain-protein	gnl\|CDD\|223407	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].	1.14806e-73
NZ_CP006569.1\|WP_025423101.1\|3372472_3373345_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
NZ_CP006569.1\|WP_025423104.1\|3375296_3375791_+\|peptidylprolyl-isomerase-B	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	3.1766e-122
NZ_CP006569.1\|WP_025423108.1\|3377821_3378892_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	1.92716e-163
NZ_CP006569.1\|WP_081730516.1\|3390264_3391293_-\|hypothetical-protein	gnl\|CDD\|287960	pfam11047, SopD, Salmonella outer protein D. SopD is a type III virulence effector protein whose structure consists of 38% alpha-helix and 26% beta-strand.	5.96959e-14
NZ_CP006569.1\|WP_025423117.1\|3389161_3389584_-\|Cu(I)-responsive-transcriptional-regulator	gnl\|CDD\|182320	PRK10227, PRK10227, HTH-type transcriptional regulator CueR.	3.29112e-75
NZ_CP006569.1\|WP_025423103.1\|3373646_3375032_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP006569.1\|WP_025423102.1\|3373347_3373560_+\|ribosome-associated-protein-YbcJ	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	3.56362e-30
NZ_CP006569.1\|WP_025423119.1\|3394424_3395225_+\|conjugal-transfer-protein-TraB	gnl\|CDD\|226258	COG3735, COG3735, Uncharacterized protein conserved in bacteria [Function unknown].	3.18525e-73
NZ_CP006569.1\|WP_025423120.1\|3395303_3395786_+\|Cys-tRNA(Pro)/Cys-tRNA(Cys)-deacylase-YbaK	gnl\|CDD\|182634	PRK10670, PRK10670, Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK.	2.20204e-97
NZ_CP006569.1\|WP_025423106.1\|3376659_3377082_-\|ASCH-domain-containing-protein	gnl\|CDD\|119345	cd06553, ASCH_Ef3133_like, ASC-1 homology domain, subfamily similar to Enterococcus faecalis Ef3133. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.	1.58913e-55
NZ_CP006569.1\|WP_162149617.1\|3384955_3385591_+\|multifunctional-acyl-CoA-thioesterase-I/protease-I/lysophospholipase-L1	gnl\|CDD\|182521	PRK10528, PRK10528, multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional.	6.34947e-120

>NZ_CP006569.1|WP_025423109.1|3379315_3381547_-|NADP-dependent-isocitrate-dehydrogenase
MTTTSKIIYTLTDEAPALATYSLLPIIRAFTQSLGIAVETRDISLGGRILANFPEHLQSDQRLSDHLAELGQLAVTPEANIIKLPNISASLPQLKAAIKELQTQGYAVPDYVDEPNTDAQKEAKARYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKHPHRMGEWSASSQSHVAHMHEGDFYGSEKSALIERDGNVSITLVGRDGAKQVLKAKTAVNAGEIIDAAVMSKRALSSFIAQQITDAKRQGVLLSLHLKATMMKVSDPIMFGIVVSEFYKEVLARYNDKLKTLGFDANNGIGDLYAKIKELPAAEQTEITQAIEALYTERPSLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGKMWGPDGQLHDTKAIIPDRCYAGVYQAVIEDCKQHGAFDPKTMGSVPNVGLMAQKAEEYGSHDKTFQIPADGVVQVADEAGNVLLAHPVEAGDIWRMCQAKDAPIQDWVKLAVNRARESNTPAVFWLDPARAHDARMIEKVQRYLQENDTDGLDIRILSPVDATRFSIERIRAGKDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFVQENHLRWDSLGEFLALAASLEHVGIAAGNSKAKVLAKTLDQATGKFLDANKSPSRKVGELDNRGSHFYLALFWAQALAEQNEDTALKQQFTELARTLADNEQKIVSELNQVQGNAVDIGGYYHPDPALTSKAMCPSATLNAALQAVGA
>NZ_CP006569.1|WP_025423108.1|3377821_3378892_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKPVCVLGNGQLGRMLRQAGEPLGIAVYPVGLDAEPESVPFGQSVITAEIERWPETALTRELARHPGFVNRDIFPRLADRLTQKQLLDQLRLATAPWAPLAGAAQWPEVFVSFGNLAIVKRRVGGYDGRGQWRLHPGEEATLPQECYGSCIVEQGIAFDGEVSLVGARSADGVQVFYPLTHNFHQDGILRASVVFPATDSGLQQQAENMLGAILHELDYVGVMAMECFIVGDRLLINELAPRVHNSGHWTQNGASISQFELHLRAILALPLPAPVVSAPAAMVNIIGSDVNIDWLADSLVHLHWYQKEVRAGRKVGHLNLSHPDSAALSRSLQRLATLLPAEYQHGIDWARQKLAG
>NZ_CP006569.1|WP_025423107.1|3377315_3377825_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MQSNHATAKIAIVMGSQSDWSTLQFAAEILTALNVPFEAEIVSAHRTPDKLFRFAEQAADNGYAVIIAGAGGAAHLPGMLAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILALHDAALADRLSQWRQRQTDEVLSHPDPREQA
>NZ_CP006569.1|WP_025423106.1|3376659_3377082_-|ASCH-domain-containing-protein
METTPKESAPLTVTYPGAAYWAFGDSAQMADELGALVVGGIKTATCCSLQAYQQDASSPRIGDYSVILDGRERPLAVIRTTALRLLRFCDVTAEMAAKEGEGDLSLAYWRETHRAFFERAGHWSEEMALVVEEFMLVETL
>NZ_CP006569.1|WP_025423105.1|3375801_3376521_+|UDP-2,3-diacylglucosamine-diphosphatase
MSTLFVADIHLCAQEPAITAGFLHFLRTRAVAAQALYILGDLFEVWIGDDDPNPLHHEIAVALRALGQRGIPCYFIHGNRDFLLGQRYASACGMTLLPAQQVMQLDGLRVVILHGDTLCTDDSDYQRFRRRVHQRWLQRLFLSLPLRLRLRIADRMRANSLRVNAGKTADIMDVNAQAVMAVLAHTGATVMIHGHTHRPAIHELPGERRRAVLGAWHRQGSAIEVTAKGVTLHEFPFGS
>NZ_CP006569.1|WP_025423104.1|3375296_3375791_+|peptidylprolyl-isomerase-B
MVTLHTNHGDIVIKTFAEKAPLTVENFLNYCRSGFYDNTIFHRVINGFMIQGGGFVPGMEQKATQAPVKNEANNGLKNTRGTLAMARTNDPHSATAQFFINVVDNDFLNFRSERPDGWGYCVFAEVTEGLDVVDKIKGVATGRSGMHQDVPKDDVIITHVTIAE
>NZ_CP006569.1|WP_025423103.1|3373646_3375032_-|cysteine--tRNA-ligase
MLKIFNTLTRQKEEFKPIHAGKIGMYVCGITVYDLCHIGHGRTFVAFDVVTRYLRYRGYEVNYVRNITDIEDKIIRRAAENGEPFHQLTDRMIQEMHLDFDQLNILRPDHEPRATHYMDAIIELVGQLLAREHAYVATNGDVMFAVDSDSDYGLLSRQDLAQLQAGARVEVAEVKRNPMDFVLWKMSKPGEPSWPSPWGDGRPGWHIECSAMNSRQLGHHFDIHGGGSDLIFPHHENEIAQSTCAHDGPYVNVWMHAGMVMVDREKMSKSLGNFFTVRDVLRYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDAAAAPAGGENFVAQFTAAMDDDFNTPEAYSVLFDIAREVNRLKSEQPAAAQGMAATLRQLAGVLGLLEQDPAAFLQQGAGGDVDENAEITALIQQRNDARKARQWALADEARDKLTALGIVLEDGPQGTTWRRG
>NZ_CP006569.1|WP_025423102.1|3373347_3373560_+|ribosome-associated-protein-YbcJ
MTTFSLEGHPYIALCDLLKISGWCDSGAAAKLVIDEGRVTVNDAVETRRRCKITVGQRVAYAGQQVTIAD
>NZ_CP006569.1|WP_025423101.1|3372472_3373345_+|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MVAKIIDGKAVAQQVRSEVAARVQERLKAGKRAPGLAVVLVGGDPASQIYVASKRKACEDVGFISLSYDLPSTVTEAELLALIDRLNADRRVDGILVQLPLPAGIDNISVLERIAPDKDVDGFHPYNVGRLCQRAPLLRPCTPRGIVTLLERYRIDTFGLNAVVVGASNIVGRPMSLELLLAGCTVTVTHRFTRDLRRHIENADLLVVAVGKAGFIPGEWIKPGAVVMDVGINRLDSGKVVGDVDYANAAERAAYITPVPGGVGPMTVATLIQNTLQACEDYHDTSAPEA
>NZ_CP006569.1|WP_025423100.1|3371033_3372194_+|site-specific-integrase
MSIFRRGSVWYGSYTTPGGKRIKESLGTEERKQAQELHDRRKAELWRIERLGDFPDVTFEEACVRWLEEKAHKKSIDADKGRIGFWLLHFEGVRLKDISEAKIYAAVSKMMNRKSEERWNQRAVAMAKKGVDIVAYKPKAVSTSTKAKHLALMKAMMRAAERDWKWIEKSPVIKVPQERNKRVRWLEPAEAQRLIDECPEPLKSTVEFALATGLRRSNIVDLKWQQIDLQRKVAWIEPEDSKSGRAIGVALNGTAEAVLRKQIGRHQNWVFVHTESAKRSDGTTTATVRKTRVDSNTAWRAALKRAGIEDFRFHDLRHTWASWLIQAGVPLSALQEMGGWESIEMVQRYAHLAPNHLTEHARQIDAIFDSRVPNLSHGENMKAGGG
>NZ_CP006569.1|WP_025423111.1|3384298_3384985_-|ABC-transporter-ATP-binding-protein
MPAENVLEVHHLSKHVGQGEHHISILTGVELVVKPAQTIALIGESGSGKSTLLGILAGLDDGSDGAVHLLGHDLTALNEERRAALRARHIGFVFQSFMLVPTLTALENVQLPALLRGEGERQSREQAVTLLTQLGLGQRLSHLPAQLSGGEQQRVALARAFSGRPQILFADEPTGNLDRATGDRIADQLFSLNRDFATTLILVTHDRQLAARCERRLRLQDGRLEEVA
>NZ_CP006569.1|WP_162149617.1|3384955_3385591_+|multifunctional-acyl-CoA-thioesterase-I/protease-I/lysophospholipase-L1
MNFKNVFRWHFPFLILLSLVSVRALAADTLLVLGDSLSAGYRMPAARAWPALLAARWQQDDNAIRVVNASISGDTATQGVARLPALLRQHKPRWVVIELGGNDGLRGFPPSQIEQDLVKAITLSQQAGAQPLLMQIRLPPNYGKRYTETFSAIYPALASRYAVPLLPFFMEQVYLRPEWMQDDGIHPNPDAQPFIAQWMADRLLPLLKHES
>NZ_CP006569.1|WP_025423113.1|3385619_3386396_+|SDR-family-oxidoreductase
MQKAVLITGCSSGIGLVAARYLRARGYRVLAACRQTRDVARLATEGFEAVALDLDDPQSVDAAADEVLRLTGNRLYGLFNNAGYGMYGRLDTLSRSQLEQQFSANLFGIHQLTRRLLPAMVPHGEGRIIQTSSVMGLVCTPGRGAYAASKFALEAWSDTLRMELYGSGVQVSLIEPGPIATSFSTNLTHTRTDQPVTNPAIARRFTLPPEAVLPKLRHALESPRARLRYPVTLVAHALTGLRRLLPGRCLDWLLRGKH
>NZ_CP006569.1|WP_025423114.1|3386447_3387302_+|co-chaperone-YbbN
MLNATVVEINETNLQQTLEQSMQVPVLFYFWSQRSPHCEQLTPVLDKLAQEYAGQFVLAKVDCDEQQHVAAQFGLRAIPTVYLFKEGQPLDGFQGPQPEEAVRELLTRALPDPAELQLQEATALVQAGDFAGALPLLKALWQEPKPASEAGLLLAETYLQLNRPDDAQAVLDQFPLQDKDTRYQGLLAQIELLRQAADTPEIQQLQQQVQLAPHDAALAVQLALQLHQVGRNEEALELLMGHLKNDLGAADGEARKILMDILAALGTGDALAGKYRRQLYSLLY
>NZ_CP006569.1|WP_025423115.1|3387558_3388476_+|SPFH/Band-7/PHB-domain-protein
MLMVIPVLVVLALIVVAAGIKIVPQGYQWTVERFGRFTQALKPGLNLVVPFMDRIGRKINMMEQVLDIPSQEIISKDNANVTIDAVCFIQVVDAARAAYEVSNLEQAILNLTMTNIRTVLGAMELDEMLSQRDSINIRLLQIVDEATNPWGIKVTRVEIRDVRPPAEMIAAMNAQMKAERTKRADILEAEGVRQSAILRAEGEKQSQILKAEGERQSAFLQAEARERAAEAEARATQMVSDAIAAGNIQAVNYFVAQKYTDALQKIGSAGNSKVIMMPLDASNLLGAIGGIAELVKESQSGRSKG
>NZ_CP006569.1|WP_038668653.1|3388472_3388931_+|NfeD-family-protein
MIVEAIRAHPHNFWLILGGLLLALEMLGASGYLLWSGIAALLVGLLTWLVPLGWEWQGAIFAVLTVGSAWLWWYRLRAGDRTRPASALNQRGQQLIGLRTRLSEPIINGFGRLRVGDSTWRVQASEDLPAGTWVEVYATEGITLRVRRAVAQ
>NZ_CP006569.1|WP_025423117.1|3389161_3389584_-|Cu(I)-responsive-transcriptional-regulator
MNISSVAKKTGLTPKAIRFYEQKGLVSPPARRENGYRSYNARHLEELTLLRQARQVGFTLEECRELVALFNDPGRHSADVKRRTLTKVREIEAHIAELDQMRQHLLALAASCPGDQGAECPIMDNLAGCCHRPPSVESAH
>NZ_CP006569.1|WP_081730516.1|3390264_3391293_-|hypothetical-protein
MAISVKVDIGQQPLAINSSRIGRLLSADKDYATHIGIWDRIKDYFRPYNKSEVLEHLYHLIHSDNTPIPQDEEGKFAHLHVALNAFANLKALAKDDDKALFQVKENHYRGVDFYIGATCVKSLDKHQPDDSPVSLLAAYYLQQVNRHPEVKSSIGQTVQDILANDTQTAWGETAPSRLLIDMWRLSGESIIDGQPIFNGVTRMTEEEITDATNRLYHKLTPLQRAALVEVGSQSGFADVNLGLQSFPNAFIEHFALGGISTSVALQYHPESAELSVRQITRRLMNDEEHQHFVINGPKPDIYPHLQMDVALTISAEGQVECVDFHASEHVETARYPAGATLG
>NZ_CP006569.1|WP_025423119.1|3394424_3395225_+|conjugal-transfer-protein-TraB
MRKVLRRLASLLGDLTPATFPWPGMDVSLASGRQFHLVGSIHMGTSAMAPLPARLLERLERAQALIVEADITASPPLTSIGEAQIPLANRLSAAHYDRVCQLSEDYQLDLAALDGLPPWHVALLLQSRQAERLGLRADFGIDYQLIQAARANDQPVIELEGPEEQLALLRRLPDQGVALLADTLTHWHTNARLLQVMIGWWLESRPVDVRQAFPSTFSHDLYSYLMTDRNHRWKSTLQQLPPGTYVVAVGALHLYGADNLPGLLRQ
>NZ_CP006569.1|WP_025423120.1|3395303_3395786_+|Cys-tRNA(Pro)/Cys-tRNA(Cys)-deacylase-YbaK
MTPAVTLLEKKRIPFILHAYEHDANETHFGEEAVQKLGLSADRVYKTLLVCLNGEARQLAVAVTPVSLQLDLKKVARALGAKKAEMADAQLAQKTTGYLVGGISPLGQKKRLPTVIDAPAQAFATMFVSGGKRGLDIELAPADLQKSLDALFADIAKREV

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Crispr_ID: NZ_CP006569_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006569_11

3482330-3482443

Orphan

Consensus_repeat	Method
GCCGGCGGCAACGCCATCAGGACCGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006569_11

>merge|NZ_CP006569|11|3482330-3482443|CRISPRCasFinder
GCCGGCGGCAACGCCATCAGGACCGTATAGGCGCCGTGGGCAACCTTTGCCCACGGCAACTGCACCCCAGCCACCGTTGTCGCCTCTGCCGGCGGCAACGCCATCAGGACCGTA

>NZ_CP006569|11|11|3482330-3482443|CRISPRCasFinder
GCCGGCGGCAACGCCATCAGGACCGTA	TAGGCGCCGTGGGCAACCTTTGCCCACGGCAACTGCACCCCAGCCACCGTTGTCGCCTCT
GCCGGCGGCAACGCCATCAGGACCGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006569.1\|WP_025423180.1\|3472353_3473457_-\|cobalamin-independent-methionine-synthase-II-family-protein	unknown	unknown	gnl\|CDD\|180601
NZ_CP006569.1\|WP_025423187.1\|3482640_3483558_-\|fructokinase	unknown	unknown	gnl\|CDD\|236565
NZ_CP006569.1\|WP_025423193.1\|3489043_3490594_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|369639
NZ_CP006569.1\|WP_051440183.1\|3466802_3467819_-\|LD-carboxypeptidase	unknown	unknown	gnl\|CDD\|132882
NZ_CP006569.1\|WP_025423195.1\|3491005_3492220_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273323
NZ_CP006569.1\|WP_025423183.1\|3476167_3476857_-\|phosphate-response-regulator-transcription-factor-PhoB	unknown	unknown	gnl\|CDD\|182277
NZ_CP006569.1\|WP_025423186.1\|3478531_3482278_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|182330
NZ_CP006569.1\|WP_025423194.1\|3490696_3491029_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006569.1\|WP_025423191.1\|3486869_3487631_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224332
NZ_CP006569.1\|WP_025423188.1\|3483750_3484776_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274969
NZ_CP006569.1\|WP_025423177.1\|3468340_3468943_+\|peroxiredoxin-C	unknown	unknown	gnl\|CDD\|184962
NZ_CP006569.1\|WP_025423185.1\|3477308_3478535_+\|exonuclease-subunit-SbcD	unknown	unknown	gnl\|CDD\|182871
NZ_CP006569.1\|WP_025423189.1\|3485277_3486195_+\|recombination-associated-protein-RdgC	unknown	unknown	gnl\|CDD\|234726
NZ_CP006569.1\|WP_025423181.1\|3473659_3474628_-\|phosphate-ABC-transporter-substrate-binding-protein-PstS-family-protein	unknown	unknown	gnl\|CDD\|270371
NZ_CP006569.1\|WP_025423190.1\|3486461_3486758_-\|pyrimidine/purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|182565
NZ_CP006569.1\|WP_025423178.1\|3469091_3470459_-\|proline-specific-permease-ProY	unknown	unknown	gnl\|CDD\|182566
NZ_CP006569.1\|WP_025244430.1\|3487992_3488184_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182421
NZ_CP006569.1\|WP_025423179.1\|3470533_3471850_-\|branched-chain-amino-acid-transport-system-II-carrier-protein	unknown	unknown	gnl\|CDD\|185331
NZ_CP006569.1\|WP_025423182.1\|3474627_3475965_-\|phosphate-regulon-sensor-histidine-kinase-PhoR	unknown	unknown	gnl\|CDD\|182895
NZ_CP006569.1\|WP_025423192.1\|3488293_3488818_-\|shikimate-kinase-AroL	unknown	unknown	gnl\|CDD\|235153

Protein	Function_ID	Function_description	E-value
NZ_CP006569.1\|WP_025423180.1\|3472353_3473457_-\|cobalamin-independent-methionine-synthase-II-family-protein	gnl\|CDD\|180601	PRK06520, PRK06520, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase.	0
NZ_CP006569.1\|WP_025423187.1\|3482640_3483558_-\|fructokinase	gnl\|CDD\|236565	PRK09557, PRK09557, fructokinase; Reviewed.	0
NZ_CP006569.1\|WP_025423193.1\|3489043_3490594_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|369639	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	1.6285e-54
NZ_CP006569.1\|WP_051440183.1\|3466802_3467819_-\|LD-carboxypeptidase	gnl\|CDD\|132882	cd07025, Peptidase_S66, LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment of preformed D-Ala-D-Ala dipeptides. Some enzymes possessing LD-carboxypeptidase activity also act as LD-transpeptidase by replacing the terminal D-Ala with another D-amino acid. MccF contributes to self-immunity towards microcin C7 (MccC7), a ribosomally encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. Its possible biological role is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that MccF is involved in microcin degradation or sequestration in the periplasm.	2.81945e-57
NZ_CP006569.1\|WP_025423195.1\|3491005_3492220_-\|MFS-transporter	gnl\|CDD\|273323	TIGR00890, Uncharacterized_MFS-type_transporter_YhjX, oxalate/formate antiporter family transporter. This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.1125e-104
NZ_CP006569.1\|WP_025423183.1\|3476167_3476857_-\|phosphate-response-regulator-transcription-factor-PhoB	gnl\|CDD\|182277	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB.	8.35746e-143
NZ_CP006569.1\|WP_025423186.1\|3478531_3482278_+\|AAA-family-ATPase	gnl\|CDD\|182330	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.	0
NZ_CP006569.1\|WP_025423191.1\|3486869_3487631_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	4.80247e-29
NZ_CP006569.1\|WP_025423188.1\|3483750_3484776_-\|hypothetical-protein	gnl\|CDD\|274969	TIGR04086, hypothetical_protein, putative membrane protein, TIGR04086 family. Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. The function is unknown.	1.08778e-05
NZ_CP006569.1\|WP_025423177.1\|3468340_3468943_+\|peroxiredoxin-C	gnl\|CDD\|184962	PRK15000, PRK15000, peroxiredoxin C.	4.79472e-135
NZ_CP006569.1\|WP_025423185.1\|3477308_3478535_+\|exonuclease-subunit-SbcD	gnl\|CDD\|182871	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.	0
NZ_CP006569.1\|WP_025423189.1\|3485277_3486195_+\|recombination-associated-protein-RdgC	gnl\|CDD\|234726	PRK00321, rdgC, recombination associated protein; Reviewed.	0
NZ_CP006569.1\|WP_025423181.1\|3473659_3474628_-\|phosphate-ABC-transporter-substrate-binding-protein-PstS-family-protein	gnl\|CDD\|270371	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.674e-72
NZ_CP006569.1\|WP_025423190.1\|3486461_3486758_-\|pyrimidine/purine-nucleoside-phosphorylase	gnl\|CDD\|182565	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase.	2.84485e-59
NZ_CP006569.1\|WP_025423178.1\|3469091_3470459_-\|proline-specific-permease-ProY	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NZ_CP006569.1\|WP_025244430.1\|3487992_3488184_-\|hypothetical-protein	gnl\|CDD\|182421	PRK10380, PRK10380, hypothetical protein; Provisional.	1.22381e-25
NZ_CP006569.1\|WP_025423179.1\|3470533_3471850_-\|branched-chain-amino-acid-transport-system-II-carrier-protein	gnl\|CDD\|185331	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ.	0
NZ_CP006569.1\|WP_025423182.1\|3474627_3475965_-\|phosphate-regulon-sensor-histidine-kinase-PhoR	gnl\|CDD\|182895	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR.	0
NZ_CP006569.1\|WP_025423192.1\|3488293_3488818_-\|shikimate-kinase-AroL	gnl\|CDD\|235153	PRK03731, aroL, shikimate kinase AroL.	5.71013e-101

>NZ_CP006569.1|WP_025423186.1|3478531_3482278_+|AAA-family-ATPase
MKILTLRLKNLNALQGEWKIDFTAAPFDRSSLFAITGPTGAGKTTLLDAISLALYHQTPRLKDNPGPELMTRHTAEALAEVEFAVKGVGYRAFWSQRRAKNQPDGNLQGVKVELARISDGLILADKISDKKRLIAELTGLDFARFTKSILLAQGDFAAFLNADAKSRAGLLEELTGTDIYGRISADVFERNKAVRTELAQWEARAGAIEMLTGEQQAALEDELTQRRQEEQRLNAQRHVRQRHQAWLNERTQRQTALAQTQQASLQAAQQVQAAAPDLARLAAAEPAEALRPLLDQQRRDAQACTRAEGELAQLQQRQQQDQARLQPLAQALRLADEQLAAHEEDQRRHQQIIEEQLIPLDQQIATLRQQQEDLKRQLVPLQQRHRQESAALATQQQALHQARQQAQEESDWLDRHAACRLWGEQLPLWREQFARRDEALTHCRDLEQRVAQQRLRLTALQTEGQQRLTESQRLAQQREALSLSFAEAQRQREEQVHAQSGTTFETRWKRRQGQRPHYLLLTTLLPQLSGLADRLRQEESQQSQRLQTRFMLSQEQTALHASLEDKTRLLRQTKTTLELERRIVRLEDERRALRAGEPCPLCGATQHPAINAYQTLSPGRTEQQLQQQQTEVDQCAAAKIEGDTRLHLLVTQCQQGEETLTALAHQRNELQQRWRQAVEQLAIAPDENLRLPELATLTPEALRAAADALAAYEREETQLAQRLEQLQQATLAWQSARDALSAAELVHDRSLSALALNGQQQRDLEENLQASTLSLTQQQTDLARLNEEIAAALDAAALTVPEPMQTAAWLDARRELWLRWQQRHEQAQRRLSQITSLNGSVDALMQTVADLTQRQAALTQALTATDAELAGAGRQRHALAGDVTTVEFGARLRRTGERLRQVQLQAGQQLQAAQRQLHELAGSLSALARQRQTLAQQASSSTSQLQQALSTSSFADSAALDAALLPTGERDALREHRDRLNAQQQRTDARQQQAAEALAQVEAARPPTLSPEEDDAAVAERLAELDDQLRQLARRQGEIQQQLGSHQQRQREQHLLLRQIEESRDRCQDWAYLNELIGSKEGDKFRKFAQGLTLEHLIYLANQQLARLHGRYQLQRKTHEELELEVVDTWQADAIRDTRTLSGGESFLVSLALALALSDLVSHKTGIDSLFLDEGFGTLDAQTLDIALDALDTLNASGKMIGVISHVEAMKERIPVQIKVSKINGLGISRLQRQFAVADNAPVKEGDD
>NZ_CP006569.1|WP_025423185.1|3477308_3478535_+|exonuclease-subunit-SbcD
MRIIHTSDWHLGQSFFTKNRADEHQAFLTWLISQVDEHQVDALIVAGDVFDTGTPPSYARELFNRFVVSLQPTGCRLVALAGNHDAVATLNESRALLACLNTRIVAGGNGEDQVWVLDDRHGAPGAVLCAVPFLRPRDILVSRGGLSGGEKQQALLDAIAERYQQLYLRAQRLRDALPSPVPIIATGHLTTVGASTTDSVRDIYIGALDAFPARLFPPADYIALGHIHRPQIIGGNDCIRYCGSPIPLSFDEAGQPKQVNLVTFQDGLPPRITPLTVPETQPMRLIKGPVDEIERQLRGYADYRGERPVWLDIEVVADGYLTDIQQHLQALAEPLPVEVVLLRRSREQRSSGLHPLQQETLSELSVSEVFERRLALEEAPDEPRCQRIRGLFEQVVGDVHDGREGAEA
>NZ_CP006569.1|WP_025423183.1|3476167_3476857_-|phosphate-response-regulator-transcription-factor-PhoB
MARRILVVEDEAPIREMLCFVLEQNGFQAIEAEDYPSAVNLLAEPYPDLVLLDWMLPGGSGIQFIKQMKREALSREIPVVMLTARGEEEDRVRGLEVGADDYITKPFSPKELLARIKAVLRRISPMEAEERIELQGLSLDPASHRVTANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALESGGHDRMVQTVRGTGYRFSGRY
>NZ_CP006569.1|WP_025423182.1|3474627_3475965_-|phosphate-regulon-sensor-histidine-kinase-PhoR
MLEPITWRRLLLEGVLFCLPALLLSLFIGHLGWLLALSLLAALMRNYYFQLRLSHWLWRNPGRAPPAGGGSWISLFYGLHRMQLRQRRRRRELAMLFKRFRSGADSLPDALVMLTGDGHIFWCNGLAQQLLSFRWPEDNGQPILNLLRYPEFNDYLQRQAFQRPLTLQLNNQHWVEFRVMPYTDDQLLMVVRDVTQMRQLEGARRNFFANASHELRTPLTVLQGYLEMMTDDSLDAHMRQRAVQTMQDQSRRMERLVAQLLELSRIEAAPQGETHTPVDMPTLLKRLQASVEGLSQGQHPLVLRVNPRLWINGNEEQLRSAVSNLMYNAVIHTPPGTRIEVSWQRSAEGATFQVSDNGPGIAPEHLPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDARLDISSAPGEGTRFGFTLPARLITLPPRVDPSVSPLSPQARE
>NZ_CP006569.1|WP_025423181.1|3473659_3474628_-|phosphate-ABC-transporter-substrate-binding-protein-PstS-family-protein
MRGFSLLAGALFASCLLGGHSAALRAQPVTPAAPIPLLTGTLTSTGSDTLASLMSGWAADFSRRYPEVGVQIQAMGSAAAAAALAAGTAQLGPMSRPMSELEIAGFRQRYGYAPLALPVAQDALVVMVNQANPLEAISQRQLDAIFSVTRQCGQAAPIRRWGDVGLTGEWRTLSLLRYGRNTASGTQGFFRLRVLCGGDMQPTVNELPGSAAVAQAVAASVNAIGYTSMGFHARGVKRLAIIDAAGHTLTADAQTLRRGEYPFTRPLFLYVNKPPGKSLDPLTLAFLARVLSAEGQEQVSQAGYVPLTQSQRLTARRAAGLP
>NZ_CP006569.1|WP_025423180.1|3472353_3473457_-|cobalamin-independent-methionine-synthase-II-family-protein
MQRTQAPFRADVVGSLLRPAAIKQARQRFTDGEIDAAQLRAVEDNEIARVVAEQRALGLQVVTDGEFRRAWWHMDFFEGLDGVEGYQPDHGIQFQGVQTKARSVKVTGKLGFRHHPMLEDFRFLKSVAGDAVPKMTIPSPSVLHFRGGRAAIDRAVYPDLAEYFDDLAQTWRDAIAAFYAAGCRYLQLDDTVWGYLCSEDQKRQMRERGDDPDALAQIYAEVLNKALAGKPKDLVVSLHVCRGNFRSTWISEGGYEPVAPILFGQVKVDAFFLEYDTERAGGFEPLRFIKPGHQQAVLGLITSKTPTLEDPQAVLARIREASQYVSLDQLCLSPQCGFASTEEGNMLSEQQQWDKLKLVLDIARRAW
>NZ_CP006569.1|WP_025423179.1|3470533_3471850_-|branched-chain-amino-acid-transport-system-II-carrier-protein
MTKRLTSKDILALGFMTFALFVGAGNIIFPPMVGLQSGQHVWLAAAGFLITAVGLPVITVIALARVGGGIDALSSPIGHKAGLLLAVVCYLAVGPLFATPRTATVSFAVGVAPFAGNGELPLLIYSLIYFAVVIGISLYPGRLLDTVGHVLAPLKIIALAVLGIAAMLWPAGQPLPVSAGYSHLPFSSGFVNGYLTMDTLGAMVFGIVIVNAARSRGVASAHLLTRYTVLAGLIAGIGLTAVYLTLFKLGSGSGVLVPGAQNGAEILHAYVQYIFGAAGSGFLTVLITIACLVTAVGLTCACAEFFSEHTGMGYGKWVFLLGLFSMVVSNLGLSHLISISVPVLTAIYPPCIVLILLSFTLRWWHSSARLVAPGMLVSLVFGCLDGIKVSAYPDILPAWVDRLPLSAQGLAWLPPTLVMLVVAAAYDQSRGRQQISVL
>NZ_CP006569.1|WP_025423178.1|3469091_3470459_-|proline-specific-permease-ProY
MQSSTPSLKRGLSTRHIRFMALGSAIGTGLFYGSADAIQMAGPSVLLAYLIGGLAAYVIMRALGEMSVENPNAGSFSRYAQDNLGPMAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPLVPHWVWVLSVVLFIGAINLLSVKAFGELEFWFSFFKVATIIVMILAGIGIILWGIGNGGQPTGVANLWRHGGFFSHGVGGMILSLQMVMFAYGGIEIIGITAGEARDPERSIPRAINSVPWRILLFYVGTLAVIMSIYPWNQVGTGGSPFVLTFQNLGIPVAAGLLNFVVLTASLSAINSDVFGVGRMLHDMAGQGHAPRIFRRVSRHGIPWITVLVMMMAMLVAVYLNYLMPENVFLMIASLATFATVWVWIMILCSQIAFRRRLKPEQVRALKFPLPGGAITAGLGVVFLLFIIGLIGYFPTTRVSLYVGAVWVLLLLLGYRWVTTKRVTAS
>NZ_CP006569.1|WP_025423177.1|3468340_3468943_+|peroxiredoxin-C
MVLVTRQAPDFTAAAVLGTGEIVDNFNLKAHIQGKPAVIFFWPMDFTFVCPSELIAFDKRYAEFQKRGVEIIGVSFDSEFVHNAWRQVPTDKGGIGPVKYPMVADIKREIIKAYGIEHPDAGVALRGSFLIDKDGIVRHQVVNDLPLGRNIDEMMRMVDALQFHEEHGEVCPAQWEKGQEGMGASPEGVAKYLSENLTRL
>NZ_CP006569.1|WP_051440183.1|3466802_3467819_-|LD-carboxypeptidase
MAACCLCLSLHAGTIMAKTVHLISSSSEYDEHNIPDIVTAFKRQGFQVNRQYLDQQVSDFGYVNTDRARAENLVKALTDDDVEYLWFVRGGSGALNLLPHLFANLTNIHGAREKILVGFSDVTAIHDFINKHVGWRSVHGIVAANNKDIYQRQGEKGINMNTGLRQTFDAITHGVSYPGILPLNTPARAGVSGVLMGGNLTLLQSLFSTRYEKYLRDEILLLEDTGVTYKQLDRALHQLQYKKDFTPNAIIFGQFYPLSASDEERLIFKSVIRDFADATPIPVYYYPYFGHGATNNPMLLKHQAVITCPAEQEYCTLRQPAIRPEPKRGQQRNARAVE
>NZ_CP006569.1|WP_025423187.1|3482640_3483558_-|fructokinase
MRIGIDLGGTKIEVIALDDEGQAILRKRVATPRDDYPGTVETIAALVERVEQETGQRGSVGVGIPGTLSPYTGKVKNANSVWLNGQRLDKDLQTRLQRSVRMANDANCMAVSEATDGAGIGMSTVFAVIIGTGCGSGIALNGKVHSGGNGVAGEWGHNPLPWMDEDERRIMQEVPCYCGKSGCTETFISGTGFMQDYARLSGQQRSGAEIVHLAAEGDKWAERALSNYERRLAKALAQVINLLDPDVVVLAGGMSNVDRLYDSLPSLITPWVFGNECQTPIRKAVHGDSSGVRGAAWLWPQEEAR
>NZ_CP006569.1|WP_025423188.1|3483750_3484776_-|hypothetical-protein
METRDVAICANRVSWGSLFSGVLTAFSISLLLALLGSALGFSMVDPWAQRPAGGIGTTMTLWTAAALLLSLLAGGFVAGRLAMMAGVTHGFLTWALSLLLAIIISGFIISGALRLAGNMLGAAGSAAGNIVTAVGNNSDELAGALNNGLGKLTLDDSLPADASPKNISDALQNSEVEALHPDYLQRQLKEIRAEVSQAVAEAMRAPERSEQIMAGLAERLKQRTDAVADDIKRDDVHQALANSNRTMTPEALNQATDKVMRDKQQAAETIKQRIDTLQQNVSHAREDLQRWREEMKQRADKAAAASAKSALWLFITLLLGAIVSAAGGWWGVRSGDRYHVL
>NZ_CP006569.1|WP_025423189.1|3485277_3486195_+|recombination-associated-protein-RdgC
MLWFKNVMIYRLNRPIELSVEQIEQQLSAFAFTPCGSQDMAKSGWVPPMGAKSDVLTHAIPGHVLLCLRKEEKILPSSVIKQELQGKIDKLENEQSRKLRKTEKDALKDEVLHTLMPRAFSRFGQTFLWLDQVNNLVLVDAGSAKKAEDCLALLRKSIGSLPVVPLTMEKPIEMTLTEWVRSGDPAAGFAIQDEAELKALLEEGGIVRCKKQDLSSDEIAVHIEAGKLVTKLALDWRERVQFVLGDDGTVKRLKFADTLREQNDDIDRDDFAARFDADFTLMTGELAALITELIAGLGGEAQRQG
>NZ_CP006569.1|WP_025423190.1|3486461_3486758_-|pyrimidine/purine-nucleoside-phosphorylase
MLKVNDYFAGKVKSIGFDAASTGRASVGVMEAGEYTFTTGQPEEMTVVSGALKTLLPGANDWQVFMPGESFYVPAHSEFCLQLAETSSYLCRYLSHSR
>NZ_CP006569.1|WP_025423191.1|3486869_3487631_-|helix-turn-helix-domain-containing-protein
MSTLENAAAVLTLFVQPGTDALPESLSFSDMARRLTLPKSTLSRLLIAMESQGLLARDPHNRHYRVGHLLRSLSPPAPQSGPATLAERAAQALHQLSARYRCTGYLCMLHRDKVRIVDRFQSSAAAPAIYAVGSHLPAMNTAVGRALLACFSEREVIARLMPRQGRLGGFNQPGIVRLLQRLSVVRGQGWDFNRNETRPGYSALATALADSERREQFGLCLSFVNAGDKGAFPTDKLAGLQSATRMIAQRIYQ
>NZ_CP006569.1|WP_025244430.1|3487992_3488184_-|hypothetical-protein
MASKPPYPREAHIVKKEKGPAGKSKTVYELRADHPHPNTLISEHDTEQEALDSKERYEDESKS
>NZ_CP006569.1|WP_025423192.1|3488293_3488818_-|shikimate-kinase-AroL
MTQPLFMVGARGCGKTTVGQALARVLGYAFTDTDEMLWRSTGKTVAEIVADEGWAGFRAKESEILTSVTQGQTVVATGGGIILSAANRHFMRARGTVVYLHVSAQELARRLQAYPDEEQRPSLTGKPMIEEIADVLAAREKLYQEAAHHILDASQAPDDVVYAILQQLYPSAAS
>NZ_CP006569.1|WP_025423193.1|3489043_3490594_-|FAD-dependent-oxidoreductase
MAYEQIMSLSSLSQMTPSKITVGETDILVIRRGDEVYALEATCPHSGAPLEKGALCEDKLVCPWHKSVFAITESRPGSLLEPPSLRALKRFPVKVEQDAVWIDPHPLDEATPLQTADKQPTYVVLGTGAGGSAAIKALREMGFTGRLVVVEREKQAPYDRTALSKFVPQGDMDIHDVPSLLPESYYQQQQIERINGNVEELDSQRRRLRLEDGKTLSYDRLLLATGATPQRPDLPGKALRGVEVLRSWEQAATLVATVEREHRLVIIGNSFIGMEVAAALRKQAVEVTVVSPHPLPFEKQFGTELGRFFRRRHQEKGVTFVDGEPAAFEGEKSVSAVTLKDGQRIEATLVLLATGVAPATRFIHDLPLNDDGSLTVDRTMKVSADIFAIGDIATFPLDGNPTRIEHWRVAQQHGRVAAGAMMDKPHPYDAVPFFWTQHYGVRYEYLGHAAKWDQQEIIGSPDEDNFVSLYGLKGNLVAVVAAGRMRTTGVLLIKMGDKLGFAEAQRIVADTREAES
>NZ_CP006569.1|WP_025423194.1|3490696_3491029_+|hypothetical-protein
MGQDEVGGNGAAQAKASRNGAVRTKTYDNGAAPTEVCDNGTAHAKTSRNGAVRTKTYDNGAAPTEVCDNGTAHAKTGDNGKSPPEGGLLPDRDTPPTGCRGKLLFAVGMP
>NZ_CP006569.1|WP_025423195.1|3491005_3492220_-|MFS-transporter
MKTQSSRFIRWFTLAGTIITQFALGSVYTWSLFNGPLAQKLGQPISQVAFAFGLLSMAMAVASTTAGKFQERFGVRKVTIGAGVLLGIGLCLTGWSNSIIMLWLCAGILVGLADGIGYLLTLSNCVKWFPERKGLISACAIGAYGLGSLGFKYINSQLLDRYSLPLTFVLWGGIAVIMVVAGALMMKDAPRQEIRQRAGVRDYTLAESMRMPQYWLLALMFVTACMSGLYVIGVAKDIGENLVHLSTAVAANAVTIIAVANLSGRLVLGVLSDKMSRLRVVSLAQVIAMAGMSMLLFVHLNETLFFISLACVAFSFGGTITVYPSLVSDFFGLNNLTKNYGIIYLGFGVGSIIGSLVASLFGGFMVTFQLIAALLVIALMISLTLRQPGAVDKRGYRLGHAHGE

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Crispr_ID: NZ_CP006569_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006569_12

3505968-3506049

Orphan

Consensus_repeat	Method
GGCGCTAAAAAGGCGTCCAGGAGACACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006569_12

>merge|NZ_CP006569|12|3505968-3506049|CRISPRCasFinder
GGCGCTAAAAAGGCGTCCAGGAGACACCCAGGCGTAATAACCCTTTTCATTTCAGGCGCTACAAAGGCGTCCAGGAGACACC

>NZ_CP006569|12|12|3505968-3506049|CRISPRCasFinder
GGCGCTAAAAAGGCGTCCAGGAGACACC	CAGGCGTAATAACCCTTTTCATTTCA
GGCGCTACAAAGGCGTCCAGGAGACACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006569.1\|WP_025423215.1\|3512518_3512794_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006569.1\|WP_025423205.1\|3502841_3503864_+\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
NZ_CP006569.1\|WP_025423212.1\|3510017_3510731_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377029
NZ_CP006569.1\|WP_081730468.1\|3508802_3509750_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227311
NZ_CP006569.1\|WP_025423200.1\|3498210_3498471_-\|DUF1471-domain-containing-protein	unknown	unknown	gnl\|CDD\|369322
NZ_CP006569.1\|WP_025423217.1\|3514408_3515848_+\|D-aminoacylase	unknown	unknown	gnl\|CDD\|238622
NZ_CP006569.1\|WP_025423207.1\|3505092_3505950_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP006569.1\|WP_025423203.1\|3501680_3502079_+\|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtJ	unknown	unknown	gnl\|CDD\|182471
NZ_CP006569.1\|WP_038668670.1\|3497272_3497974_-\|extensin-family-protein	unknown	unknown	gnl\|CDD\|369129
NZ_CP006569.1\|WP_025423216.1\|3512960_3514199_-\|amino-acid-deaminase	unknown	unknown	gnl\|CDD\|143492
NZ_CP006569.1\|WP_025423214.1\|3511396_3512023_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP006569.1\|WP_025423201.1\|3498713_3499442_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP006569.1\|WP_025423210.1\|3508022_3508784_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP006569.1\|WP_025423206.1\|3503989_3504289_-\|anti-adapter-protein-IraP	unknown	unknown	gnl\|CDD\|371250
NZ_CP006569.1\|WP_025423202.1\|3500021_3501182_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349916
NZ_CP006569.1\|WP_025423198.1\|3495038_3497138_-\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
NZ_CP006569.1\|WP_025423213.1\|3510870_3511332_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|185076
NZ_CP006569.1\|WP_025423209.1\|3506843_3507803_-\|D-2-hydroxyacid-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|240646
NZ_CP006569.1\|WP_025423208.1\|3506058_3506856_+\|N-formylglutamate-amidohydrolase	unknown	unknown	gnl\|CDD\|226441
NZ_CP006569.1\|WP_025423204.1\|3502065_3502395_+\|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtI	unknown	unknown	gnl\|CDD\|182618

Protein	Function_ID	Function_description	E-value
NZ_CP006569.1\|WP_025423205.1\|3502841_3503864_+\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	2.69221e-80
NZ_CP006569.1\|WP_025423212.1\|3510017_3510731_+\|hypothetical-protein	gnl\|CDD\|377029	pfam03374, ANT, Phage antirepressor protein KilAC domain. This domain was called the KilAC domain by Iyer and colleagues.	1.36614e-31
NZ_CP006569.1\|WP_081730468.1\|3508802_3509750_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	7.05423e-30
NZ_CP006569.1\|WP_025423200.1\|3498210_3498471_-\|DUF1471-domain-containing-protein	gnl\|CDD\|369322	pfam07338, DUF1471, Protein of unknown function (DUF1471). This family consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some members of this family are annotated as ydgH precursors and contain two copies of this region, one at the N-terminus and the other at the C-terminus. The function of this family is unknown.	3.37261e-14
NZ_CP006569.1\|WP_025423217.1\|3514408_3515848_+\|D-aminoacylase	gnl\|CDD\|238622	cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.	6.43432e-146
NZ_CP006569.1\|WP_025423207.1\|3505092_3505950_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.26662e-56
NZ_CP006569.1\|WP_025423203.1\|3501680_3502079_+\|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtJ	gnl\|CDD\|182471	PRK10452, PRK10452, multidrug/spermidine efflux SMR transporter subunit MdtJ.	2.72123e-58
NZ_CP006569.1\|WP_038668670.1\|3497272_3497974_-\|extensin-family-protein	gnl\|CDD\|369129	pfam06904, Extensin-like_C, Extensin-like protein C-terminus. This family represents the C-terminus (approx. 120 residues) of a number of bacterial extensin-like proteins. Extensins are cell wall glycoproteins normally associated with plants, where they strengthen the cell wall in response to mechanical stress. Note that many family members of this family are hypothetical.	3.15065e-74
NZ_CP006569.1\|WP_025423216.1\|3512960_3514199_-\|amino-acid-deaminase	gnl\|CDD\|143492	cd06818, PLPDE_III_cryptic_DSD, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties of cryptic DSDs are still poorly understood. Typically, DSDs catalyze the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia.	1.9237e-177
NZ_CP006569.1\|WP_025423214.1\|3511396_3512023_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.70886e-13
NZ_CP006569.1\|WP_025423201.1\|3498713_3499442_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.98802e-15
NZ_CP006569.1\|WP_025423210.1\|3508022_3508784_+\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.88817e-69
NZ_CP006569.1\|WP_025423206.1\|3503989_3504289_-\|anti-adapter-protein-IraP	gnl\|CDD\|371250	pfam10796, Anti-adapt_IraP, Sigma-S stabilisation anti-adaptor protein. This family is conserved in Enterobacteriaceae. It is one of a series of proteins, expressed by these bacteria in response to stress, that help to regulate Sigma-S, the stationary phase sigma factor of Escherichia coli and Salmonella. IraP is essential for Sigma-S stabilisation in some but not all starvation conditions.	1.29294e-29
NZ_CP006569.1\|WP_025423202.1\|3500021_3501182_+\|amidohydrolase	gnl\|CDD\|349916	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NZ_CP006569.1\|WP_025423198.1\|3495038_3497138_-\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0
NZ_CP006569.1\|WP_025423213.1\|3510870_3511332_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|185076	PRK15121, PRK15121, MDR efflux pump AcrAB transcriptional activator RobA.	2.33127e-39
NZ_CP006569.1\|WP_025423209.1\|3506843_3507803_-\|D-2-hydroxyacid-dehydrogenase-family-protein	gnl\|CDD\|240646	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	9.0088e-169
NZ_CP006569.1\|WP_025423208.1\|3506058_3506856_+\|N-formylglutamate-amidohydrolase	gnl\|CDD\|226441	COG3931, COG3931, Predicted N-formylglutamate amidohydrolase [Amino acid transport and metabolism].	9.09651e-87
NZ_CP006569.1\|WP_025423204.1\|3502065_3502395_+\|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtI	gnl\|CDD\|182618	PRK10650, PRK10650, multidrug/spermidine efflux SMR transporter subunit MdtI.	5.28234e-52

>NZ_CP006569.1|WP_025423207.1|3505092_3505950_+|MurR/RpiR-family-transcriptional-regulator
MDDAPEAPQLIQRLRTGLAQLSPTERKVARALLADYPSAGLDSVQSLAQQAQVSAPSVVRFARRLGFRGFVELQQALRAELSWRSNGPLQLLDRRQTAGCHAELMETSLQATCHAISQSLRHIPAFDMQQAIELLSQGGKRVTLGGGRFSQSLAIYLERHLRQLRPQVMLLPEVPHQRILPIVDAGRQDIFVLFDFRRYQRTMATLAQQVTERGATLILVTDSHLSPLAAHAQVVLPVQVESCWPFDTHAAAFVLTETLAAGVLARLGDQALERMAQWEQLDPQA
>NZ_CP006569.1|WP_025423206.1|3503989_3504289_-|anti-adapter-protein-IraP
MKNLVIDLLIKMAKADVQTKELTAQVEAQSLLLAALVLTVGKGIPASMSSNIQKAILSAPEASAEILSSDADLLLAHFDRLISVSHFVEENADSQLAHH
>NZ_CP006569.1|WP_025423205.1|3502841_3503864_+|magnesium-transporter
MHYSSQPSTVTAVGEKIMDHAVAYYMSDQYIAISGALSAGDARQYLLDHLTDNAIPPQIYIVDKDNYLEGLLSVKRLFTEDNADVPVASLMTRDYVAVAPEQDREQVAEMLGNHLNGPVPVVRHAKLIGELGEREIAALLRDEYTEDAQRQGASLPLDEPYLSSSPWRLWRKRISWLMLLFVAEAYTGTVLKAFSDELEAAIALAFFIPLLIGTGGNSGTQITSTLVRAMALGEVSLRNLPAVLRKEIPTSFLVAISIGLVAWIRAWILNVGPQVTLVVCLTLIAITIWTAIVSSIIPLLLKRLRIDPAVVSAPFIATFIDGTGLIIYFEIAKLVMHDLG
>NZ_CP006569.1|WP_025423204.1|3502065_3502395_+|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtI
MQQFDLYHSAFLALAVVLEIFANILLKMSDGFRKLWLGMLSLLAVLGAFSALSQAVKGIDLSVAYALWGGFGIAATIAAGWIMFNQRLSGRGWAGLVLLLIGMVVIKLA
>NZ_CP006569.1|WP_025423203.1|3501680_3502079_+|multidrug/spermidine-efflux-SMR-transporter-subunit-MdtJ
MIYWIFLALAITAEVIGTLSMKYATVNGEMTGHIVMYIMITASYILLSLAIKRVALGVAYALWEGIGILFITLFSVMWFDEPFSLTKLTGLAILVVGIVMLKSGTRKAHGDNASRGDSGLSARQKERHHATV
>NZ_CP006569.1|WP_025423202.1|3500021_3501182_+|amidohydrolase
MRIPAALIDDAIRWRHQLHAIPELGYQETLTAGNIAEWLESFGLQVHTGLGGTGIVATLENGPGPAIGLRADMDALPIAEMSGVPYQSRHPGRMHACGHDGHSAILLGAARSLCLTRRFSGTLHFIFQPAEENLAGARAMIDDGLFRRFPMQGIYGLHNWPGLPAGHVGINAGAMMASLDTFEITLTGRSCHAAMPETGDDPLIAAAHLLLALQTITARHISPTDSAVLSVTQINGGVALNVIPDHAVLRGTFRCLQTPVRDRVKTLISDLVAALPPSFGVSGEVTFSVGYPVTRNHAAEAEKLRAIAVNTLGAERVHGNIPPSMASEDFAFMLDACPGAYFWLGADGETPSRPLHSASYDFNDALIEPGIALWHAIVETLLPQQP
>NZ_CP006569.1|WP_025423201.1|3498713_3499442_+|TetR/AcrR-family-transcriptional-regulator
MSSKTAVTALRGRGRPKHFDADAALDVALRLFWQHGFEATSMHDLVAATGAKAPTLYHAFGNKEGLFRAAMERYLQRFVRKMKPCLDNPHRSVAGATEDFLTACVAQFTGEGLPPGCFLICTSSALSADSQPIAALLRSHNMLPEQLLRDFYRERQIAGELPPSTDTVRLAKYLACQLQGMAVQARDGVSRRQLCTLVALIMALWPQLARLPAASPAVAHGVDEMSLGADSSEGVDRRAYRR
>NZ_CP006569.1|WP_025423200.1|3498210_3498471_-|DUF1471-domain-containing-protein
MKNVTYAIAALMLSTLSFVGFAAQLVQQAPADQQKVGVVSATVNNSNLSQLQAELAAQADANGAKSYKITSASGENNLHGTAVIYQ
>NZ_CP006569.1|WP_038668670.1|3497272_3497974_-|extensin-family-protein
MVRFLLVIAVLAALVVGGYPWIDRHLPPGYRPFAPLSVDDPPTWVTRMKLKRIKQDPAACMALLTQAQAAGRITFRQQRSSEGDCPLDNPVRVTRFGPVALSASFLASCPLALSSTMFVGQAAAPEAQTLLGKRLVRIDHVGSFACRNIYHRAEGRRSEHASADALDVAAFRFSDGSRLTIGGDYRRQNDGGQYLRTLFSASCAYYGNALGPDYNAAHASHFHLGMRGFGLCR
>NZ_CP006569.1|WP_025423198.1|3495038_3497138_-|elongation-factor-G
MARRTPIERYRNIGISAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQEQERGITITSAATTAYWKGMAGDLPAHHINIIDTPGHVDFTIEVERSMRVLDGAVMVYDAVGGVQPQSETVWRQANKYHVPRIAFVNKMDRTGADFFRVRDQISERLKGVAVPVQIPVGAEEQFQGVVDLVKMKMIVWDETSLGVKFTYDAIPADLLPLAETWHNRMVEAAAEANEALLEKYLNGEPLSEQELKAALRQRTIANEIVPMLCGSAFKNKGVQALLDAVVDYLPSPIDVRAISGHDEADREAVRHASDSEPFSALAFKIMTDPFVGQLIFFRVYSGVASTGDTIYNPVKGKKERLGRLLQMHANERKDIREVRAGDIVATVGMKDVTTGDTLSDPAQAIILERMVFPEPVISQAIEPKTKGDQEKMGIALSRLMQEDPSFRVRTDEESGQTIISGMGELHLEILMDRLRREFNVEVAVGKPQVAYRETITQSVESVEGKFVKQSGGRGQYGHVVLNLTPQPAGQGYAFIDDIKGGVVPREYIPAVDKGIQETLVTGVLGGYPVVDVKVALVFGSYHEVDSNENAFRMAASMAFKEGMRRASPVLLEPMMAVEVETPEEFMGNVMGDLSSRRGMVQGMEDIAGSKLIRAEVPLAEMFGYSTVLRSMSQGRATYTMEFKHYAAAPRQVAEEVIKARQR
>NZ_CP006569.1|WP_025423208.1|3506058_3506856_+|N-formylglutamate-amidohydrolase
MNAALPPPLLALDEPEPAGIARPGAASPFVILCDHAGKRIPRLLDSLGLPRREIARHIGWDIGALGVAQGLSARLQATLVYQRYSRLVIDCNRQPDAPSAIPTVSEQTPIPGNRALTPADRAARRAAIFDPYHQAINALLHRRLACAKPTCLIAMHSFTPAFMGLSRPWQIGVLFDRQPAFAREVLRLLQRAGDWVVGENQPYALDDTDYAVPVYAYGHRLPYVEIEIRQDLIADVGGQRAWAARLAQLLPMAWQCWQANGAQVS
>NZ_CP006569.1|WP_025423209.1|3506843_3507803_-|D-2-hydroxyacid-dehydrogenase-family-protein
MSLRCAILDDYQHVALTLADWAFNGASVDVFSLTTHYEDEAALAAQLVDCAIIVVMRERTPLTASLMDRLPALRMVVTSGMRNAAIDLDAARARDITVCGTASDSAPPMELTWALILGLARHIVPENQALRQNGPWQHSLGLTLKGKRLGLLGLGKIGGAMARVAQAFGMEVVAWSRHLDAESAAAAGVTLAASKEALLAASDIVSIHLVLSERTRGLIGAAELAQMKPGALLINTSRAAIVERDALITALEQGRIAGAGLDVFEVEPLPAQDRLRQLPNVLATPHLGYVSDSNYRLYFREAVEDIQAWLNGAPVRQLT
>NZ_CP006569.1|WP_025423210.1|3508022_3508784_+|SDR-family-oxidoreductase
MSTFLSTPNEVAGKVVLVTGAASGIGRSIAELMHQRGARVIAEDVQPEVNQLAAENLIPLVADITADGAAEQAVTLAQNAFGRLDILVNCAGRILYKPLIELTREEWQWQMETNVTGAFLHSREAMKVMMQQRNGAIVNIASYAAYFAFPGIAAYTASKGALVQLTRTQALEAIAYGIRVNAIGVGDVVTNILNHFREDGREFLAEHGRNAPIGRAAQPQEIAEIAAFLASDRASFMVGSVVMADGGISVQIG
>NZ_CP006569.1|WP_081730468.1|3508802_3509750_-|helix-turn-helix-domain-containing-protein
MAPGFAPEHLAQRASRAVRVDTGQTTPLGLEAHIPGERIAGNEAHLQPDILVQIFRRQRTEQSVQVPAVAEPLLVWILTGCARVEERGVGERWQAKDVSAGDFYLTATDVPYEMRWQAHGPEPFEVMHVYLGVSLLEEAVAQVQGRPCRIREAAGERDEVISQLLALCRRELLRRHDTSTTFIAGLAQCLAVHLARFYVKAGAGTGMRRPALQAFRLQKATAEMEARLSQPFDLAVIAQAAGLSKYHFSRQFKNATGLSPSNYFIRLRMRRARQLLADTRRSIIDIGLEVGYSSPGHFSQVFRREVGVSPSHYRQ
>NZ_CP006569.1|WP_025423212.1|3510017_3510731_+|hypothetical-protein
MMISAAGFVAHHQTVAMSSRELADLTGATHGEVKRLIVSLDSGKRLSQPLRTADYLLANGQPRQEYLLDQRDSLTVVALLSPSFTPVVLDRWQARETTHDLPDFTNPAAAARAWAEEFERRQAAEKHLATLAPKARFFDRYVAVEGAMGFRQVCKLLRVKESEFRQFLLERQIMYRLAGVLTPYQQHLDAGRFELHTGTSGSRYTFAQARFTAKGVKWIADLWAAHAATPQAKSAAA
>NZ_CP006569.1|WP_025423213.1|3510870_3511332_-|helix-turn-helix-domain-containing-protein
MSHAGIVQDLIAWIEANLEQPLDIDHVAERAGFSKWYLQRMFKHHTGYPLANYIRRRRLSESACRLATGNEAILSVALAVGFDSQQSFSRSFKREYGESPGMYRRMAGKRQGGIPPCCARPPQPMQEVEQGVQQARVRLHHAFPPGEARVEER
>NZ_CP006569.1|WP_025423214.1|3511396_3512023_-|TetR/AcrR-family-transcriptional-regulator
MKEYTATLCGLRGPTDHCIRDQIVSAANEHFSHYGYGKTTVSDLAKAIGFSKAYIYKFFDSKQAIGEAICSRCMNVALEAVGEAMRNAGSAAEKFCRLFDLLVGNAAKLFVNERKLYDIAVYAAAERWPSSLAYEQEIRTLLRQIIQEGRENGEFEQQTPLDECCQAVYLVMQPFINPLLLQHHLDLLPQGPEQLSRLVLRSLKHQDA
>NZ_CP006569.1|WP_025423215.1|3512518_3512794_+|hypothetical-protein
MKTGIFVLPVLLMATPVYALYADDTRNAARHAAGLDTVSVIDTRQLTRDTPSDAMAEHVAAPCKPDIVPPGKFRRRSLDGKDGKLSKLGLF
>NZ_CP006569.1|WP_025423216.1|3512960_3514199_-|amino-acid-deaminase
MKYHDVAGVAHKAAIMHRPDDRPVNLLLEDVCLPAVAVKSQSLENNITWMQRYADARGVSLAPHGKTTMTPWIFRRQTALGAWAIGVGSAWQASVAMQSGARRVLMVNQLVGRANMQLVSRLKNDYPACHFFCCVDSEANASALSTFFAARGQRLDILIELGVPGGRCGCRSSEEAEALAERVTTLPGLTLHGIELYEGVIHDEDPRPRVEQLLRDAAALALSFSRHQWVKGEMILTGAGSSWYDVVCNIWHETPLPDGCRLVIRPGCYVTHDGGIYQQAQDAVMARDPIACGLGGDLLSALELIAMVQSVPEPGRAVVNFGKRDSAFDAGLPQPVAHYRQGQALPFTPGAFTTVDIMDQHAMLTLVPGSEVQVGDILVFTTSHPCLTFDKWKMLFLIDSDYNVLEEMETCF
>NZ_CP006569.1|WP_025423217.1|3514408_3515848_+|D-aminoacylase
MEYDYLFKHVTVIDGSGGPEYRADVAVAGDRIAAIAPTLHAAARTVIDGQDRVLAPGFIDVHTHDDINVIRMPAYLPKISQGITTVIVGNCGISAAGTTLKGEVPDPMNLLGEADQFIYPTVDHYARAVSDARPAVNVGTLVGHTALRNNHMDDLFRPARDNEIAAMRRDLREALRQGALGLSTGLAYATAFASTTEEVMALAEELTDAGGLYTTHLRSEFAPILDAMDEAFRIGRHGRVPVLISHHKCAGAQNWGRTRETLKLFDKVRLEQDVSCDCYPYSASSSTLDKKQITDEFDIVITWSTPHPEVAGRKLAEIAAEWSMTLQEAGAKLMPAGAIYYNMDEQDVRRVLSYPVTLIGSDGLPNDPMPHPRLWGAFPRVLGHYSRDEKLFPLTTAIHKMTGLSAARFNLSGRGLVREGYFADLVLFDPQTVAARATFAEPQQPAAGIDTVMVNGSISYGETGGAIGRAGRFLRRAPN

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Crispr_ID: NZ_CP006569_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006569_13

3801970-3802063

Orphan

Consensus_repeat	Method
GGCCGTAGCCTAAGCCAAACGCATGCCATAGCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006569_13

>merge|NZ_CP006569|13|3801970-3802063|CRISPRCasFinder
GGCCGTAGCCTAAGCCAAACGCATGCCATAGCTGCATGTCATAGCTGAAGGCAAGGACGCGGCCGTAGCCTAAGCCAAACGCATGCCGTAGCTG

>NZ_CP006569|13|13|3801970-3802063|CRISPRCasFinder
GGCCGTAGCCTAAGCCAAACGCATGCCATAGCTG	CATGTCATAGCTGAAGGCAAGGACGC
GGCCGTAGCCTAAGCCAAACGCATGCCGTAGCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006569.1\|WP_081730474.1\|3813891_3818364_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373366
NZ_CP006569.1\|WP_025423445.1\|3793103_3794213_+\|excisionase-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|133390
NZ_CP006569.1\|WP_025423443.1\|3790343_3790886_-\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|185321
NZ_CP006569.1\|WP_025423441.1\|3787357_3788014_+\|carbonate-dehydratase	unknown	unknown	gnl\|CDD\|182460
NZ_CP006569.1\|WP_158500166.1\|3818582_3819605_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275380
NZ_CP006569.1\|WP_148296318.1\|3788752_3789742_+\|F-box-protein	unknown	unknown	gnl\|CDD\|197608
NZ_CP006569.1\|WP_025423446.1\|3794442_3794790_+\|YacC-family-pilotin-like-protein	unknown	unknown	gnl\|CDD\|370620
NZ_CP006569.1\|WP_025423452.1\|3802494_3803478_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|287960
NZ_CP006569.1\|WP_025423455.1\|3807117_3809784_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl\|CDD\|236500
NZ_CP006569.1\|WP_025423453.1\|3803527_3804955_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
NZ_CP006569.1\|WP_025423449.1\|3796677_3797043_-\|YacL-family-protein	unknown	unknown	gnl\|CDD\|235372
NZ_CP006569.1\|WP_025423454.1\|3805185_3807102_-\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|236999
NZ_CP006569.1\|WP_025423450.1\|3797272_3799870_-\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	unknown	unknown	gnl\|CDD\|236424
NZ_CP006569.1\|WP_025423457.1\|3811243_3812611_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182324
NZ_CP006569.1\|WP_038669837.1\|3791232_3792798_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|235000
NZ_CP006569.1\|WP_025423456.1\|3809911_3810676_-\|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR	unknown	unknown	gnl\|CDD\|181879
NZ_CP006569.1\|WP_025423461.1\|3819820_3820675_-\|beta-lactamase-regulator-AmpE	unknown	unknown	gnl\|CDD\|374997
NZ_CP006569.1\|WP_025423447.1\|3794899_3795763_+\|polyamine-aminopropyltransferase	unknown	unknown	gnl\|CDD\|234843
NZ_CP006569.1\|WP_025423448.1\|3795791_3796586_+\|adenosylmethionine-decarboxylase	unknown	unknown	gnl\|CDD\|235480
NZ_CP006569.1\|WP_025423462.1\|3820691_3821249_-\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	unknown	unknown	gnl\|CDD\|236984

Protein	Function_ID	Function_description	E-value
NZ_CP006569.1\|WP_081730474.1\|3813891_3818364_+\|hypothetical-protein	gnl\|CDD\|373366	pfam14891, Peptidase_M91, Effector protein. This family of proteins contains an HEXXH motif, typical of zinc metallopeptidases. The family includes the E. coli effector protein NleD, which cleaves and inactivates c-Jun N-terminal kinase (JNK).	1.79687e-07
NZ_CP006569.1\|WP_025423445.1\|3793103_3794213_+\|excisionase-family-DNA-binding-protein	gnl\|CDD\|133390	cd04762, HTH_MerR-trunc, Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.	4.24101e-10
NZ_CP006569.1\|WP_025423443.1\|3790343_3790886_-\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|185321	PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase; Provisional.	2.5945e-105
NZ_CP006569.1\|WP_025423441.1\|3787357_3788014_+\|carbonate-dehydratase	gnl\|CDD\|182460	PRK10437, PRK10437, carbonic anhydrase; Provisional.	4.13143e-161
NZ_CP006569.1\|WP_158500166.1\|3818582_3819605_+\|hypothetical-protein	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	3.14091e-26
NZ_CP006569.1\|WP_148296318.1\|3788752_3789742_+\|F-box-protein	gnl\|CDD\|197608	smart00256, FBOX, A Receptor for Ubiquitination Targets.	0.00020441
NZ_CP006569.1\|WP_025423446.1\|3794442_3794790_+\|YacC-family-pilotin-like-protein	gnl\|CDD\|370620	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS). This family comprises lipoproteins from four gamma proteobacterial species: PulS protein of Klebsiella pneumoniae (P20440), the OutS protein of Erwinia chrysanthemi (Q01567) and Pectobacterium chrysanthemi, and the functionally uncharacterized E. coli protein EtpO. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family. In the pilotin from this four-helix protein from enterohemorrhagic Escherichia coli, the straight helix alpha2, the curved helix alpha3 and the bent helix alpha4 surround the central N-terminal helix alpha1. These helices create a prominent groove, mainly formed by side chains of helices 1,2 and 3 suggesting this groove is important as a binding site.	2.84599e-09
NZ_CP006569.1\|WP_025423452.1\|3802494_3803478_+\|hypothetical-protein	gnl\|CDD\|287960	pfam11047, SopD, Salmonella outer protein D. SopD is a type III virulence effector protein whose structure consists of 38% alpha-helix and 26% beta-strand.	0.00144962
NZ_CP006569.1\|WP_025423455.1\|3807117_3809784_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0
NZ_CP006569.1\|WP_025423453.1\|3803527_3804955_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP006569.1\|WP_025423449.1\|3796677_3797043_-\|YacL-family-protein	gnl\|CDD\|235372	PRK05248, PRK05248, hypothetical protein; Provisional.	2.03267e-56
NZ_CP006569.1\|WP_025423454.1\|3805185_3807102_-\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|236999	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated.	0
NZ_CP006569.1\|WP_025423450.1\|3797272_3799870_-\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	gnl\|CDD\|236424	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated.	0
NZ_CP006569.1\|WP_025423457.1\|3811243_3812611_+\|amino-acid-permease	gnl\|CDD\|182324	PRK10238, PRK10238, aromatic amino acid transporter AroP.	0
NZ_CP006569.1\|WP_038669837.1\|3791232_3792798_-\|oxidoreductase	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	9.53844e-134
NZ_CP006569.1\|WP_025423456.1\|3809911_3810676_-\|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR	gnl\|CDD\|181879	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR.	1.86287e-174
NZ_CP006569.1\|WP_025423461.1\|3819820_3820675_-\|beta-lactamase-regulator-AmpE	gnl\|CDD\|374997	pfam17113, AmpE, Regulatory signalling modulator protein AmpE. AmpE is a family of bacterial regulatory proteins. AmpE in conjunction with AmpD sense the effect of beta-lactam on peptidoglycan synthesis and relay this signal to AmpR. AmpR regulates the production of beta-lactamase.	1.28116e-178
NZ_CP006569.1\|WP_025423447.1\|3794899_3795763_+\|polyamine-aminopropyltransferase	gnl\|CDD\|234843	PRK00811, PRK00811, polyamine aminopropyltransferase.	1.89899e-178
NZ_CP006569.1\|WP_025423448.1\|3795791_3796586_+\|adenosylmethionine-decarboxylase	gnl\|CDD\|235480	PRK05462, PRK05462, adenosylmethionine decarboxylase.	0
NZ_CP006569.1\|WP_025423462.1\|3820691_3821249_-\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	gnl\|CDD\|236984	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD.	4.8819e-128

>NZ_CP006569.1|WP_025423450.1|3797272_3799870_-|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase
MLEDYRKHVAERAAQGIVPKPLDAVQMAALVELLKNPPAGEEAYLLDLLTNRVPPGVDEAAYVKAGFLAAVAKGEASSPLVTAEKAIDLLGTMQGGYNISPLVDALDKDALAPIAARALKSMLLMFDNFYDVEEKARAGNAHAQDVMTSWAEAEWFLSRPPLAEKMTVTVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNARDGIIPDQPGNVGPIQQIEALNGKGFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPYVPNKRGGGVVLGSKIAPIFFNTMEDAGALPIEVDVSDLNMGDVIDIYPFAGEIRHHETGALLASFTLKTDVLVDEVRAGGRIPLIIGRGLTARARESLGLSPSTIFRHARDVAASDKGYTLAQKMVGRACGVPGVRPGQYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVQTHHTLPDFIMNRGGVSLRPGDGIIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGAMQPGITLRDLVHAIPYYAIKQGLLTVEKKSKKNIFSGRILEIEGLPELKVEQAFELADASAERSAAGCTIKLDQAPITEYLNSNIVLLKWMISEGYGDRRTLERRIKGMESWLANPSLLSADADAEYAAVIEIDLAEISEPILCAPNDPDDARLLSDVAGSKIDEVFIGSCMTNIGHFRAAGKLLDSHKGQLPTRLWVAPPTKMDAAQLTEEGYYSVFGKSGARMEIPGCSLCMGNQARVTDGATVVSTSTRNFPNRLGNGADVYLASAELAAVTSLLGRLPTVEEYLQAMALVDQTAVDTYRYLNFDRLSEYTDKADQVIFQTAV
>NZ_CP006569.1|WP_025423449.1|3796677_3797043_-|YacL-family-protein
MDYEFLRDVTGQVIVKFSMGHEAIGHWLNDEVKGDMALLADVERRLLSLSGSLAQWQHIGHEYTLLIDAEEVMVRANGISVECDDLEEGLSYYDEESLSLCGSDDFLLMLKRYRQFMHTGG
>NZ_CP006569.1|WP_025423448.1|3795791_3796586_+|adenosylmethionine-decarboxylase
MQKLKLHGFNNLTKSLSFCIYDICYAKTADDRDGYIAYIDEQYNANRLTEILSETCSMIGANILNIARQDYEPQGASVTILVSEEPVDPGSIDTSEHPGPLPESVVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDIVTMDYRVRGFTRDINGVKHYIDHEINSIQNFMSKDMKALYHMMDVNVYQENIFHTKMMLKDFDLKHYLFNARPDDLSADERKAITDLLYKEMQEIYYGRNLPVI
>NZ_CP006569.1|WP_025423447.1|3794899_3795763_+|polyamine-aminopropyltransferase
MSNQETWHETLHDHFGQYFTVDNVLYRETTGQQDLVIFENAALGRVMALDGVVQTTERDEFIYHEMMAHVPLVAHGNAKKVLIIGGGDGGMLREVSRHPGVEQITMVEIDAGVVTFCQKYLPSHNAGAFDDPRFTLVIADGVDFVSQSSEKFDVIISDCTDPIGPGESLFTSDFYQGCARCLNQDGIFVAQNGVCFLQQEEAVNSHRKLRHYFSDVSFYQAAVPTYYGGIMTFAWASQNPALRQLDTATLAARIDKTGLTCRYYNAAIHNGSFALPQYLLNALSACR
>NZ_CP006569.1|WP_025423446.1|3794442_3794790_+|YacC-family-pilotin-like-protein
MKNTLLVMLLLGLLGISSAAQALTENEAEDMADLTAVFVYLKNNCGYADMPNEQIRRAILIFAQQNRWDLSNYAAYDMRALGEDSYRDLSGIPVPSAKKCESLATNSLGLLAYAK
>NZ_CP006569.1|WP_025423445.1|3793103_3794213_+|excisionase-family-DNA-binding-protein
MANDILTTTQAAQLLGISVRTAQLFIEGGALASWKTPGGHRRVHRADVLAFMAKKNDRAAKLSSARVILLASPARRPLLEGLLSTVGEGAVDTVDDVYATAFAIGHRLPAVVVVDLADARAERLSLLSHLAAHPALGQTRLMAVNDADADATATDANRAPPSVQVTSAEQLPLVIRDALSDITPPIERMALPVSFPLAANESQRLEALDRSGLVDTAPEAAFDRLTWLASQNLRMPVALMTLLTPTRQWFKSRQGLKLTQTPRSWAFCNHTVLQKEVFAVNDLSRETLFADNPAVANPPNFRFYAGAPIVDPDGFALGSLCVIDYQPRALDAQQAQTLLALAELASDEVRLRAVNRQWRWACDRLERQA
>NZ_CP006569.1|WP_038669837.1|3791232_3792798_-|oxidoreductase
MTTDVGGNEVHGRFDFIVCGAGPSGSVVAARLAENPHVRVLLVEAGGGDDVPEVMDPAQWPLNLGSERDWAFVAQPNSHLNGRAIPLNMGKVLGGGSSINVCVWARGHQNDWENYAADAGDKGWGYESVLGIYRRIEDWQGAPDPLRRGVGGLVHVQSAGNPQPIARAMVDAARSLGMPAFDSPNGKMMEGRGGVAINDVIIKNGRRSSIFRSYVYPLMGRPYLTVLTRTLVSKLIYQGKSVVGVEVIEASATRRYWAEHEVILSLGAIHTPKVLMQSGIGPADELQRHGIPVVQHLPGVGQNHQDHVSFGCIFEYRTPQPIGHGGSEATLYWKSEAGLARPDMFHCQVEFPVPSAETAALGVPEHGWTMFAGLAHPKSRGLLLLSGPDVDDPIRIEANTLSHPDDLRMAFVNIALCRELGNSSVFHRLVKGESLPGNLSPQAMKAYVRNSAVTYWHQCCTAKMGRDAMSVVNSRLKVYGIDRLRLADASILPNVPSGNTTAPCVVIGERAADMIKADHRL
>NZ_CP006569.1|WP_025423443.1|3790343_3790886_-|hypoxanthine-phosphoribosyltransferase
MKHHVEVMISEQEIAKRIAELGQSISEHYRDSGSEMVLVGLLRGSFMFMADLCRAVTVSHEVDFMTASSYGSGMSSSRDVKILKDLDEDIRGKDILIVEDIIDSGNTLSRVREILALRQPKSLAICTLLDKPDRREVKVTVEWVGFTIPDEFVVGYGIDYAQRYRHLPYVGKVVTAVEPA
>NZ_CP006569.1|WP_148296318.1|3788752_3789742_+|F-box-protein
MDVNLTPAIANTASPQNRLSNTPPGLPEAINVGNTAVKLCLVTPSKKNINDLPPEMLEHIFKYIGNDKFNVRLTCHAFNDVVDEMLTEDELFKIAHGERLRESGFNAKLINQLIKQSEQGKNFVLKNCQTLHKAGFDMGKIFTLAQKETKIQSFVINNFKVLNKMGADMEYIYYLASQDPSTQTFMVDNGHALLKMGFSLFHALTLSQKSIEVHNFILTHFDRLHEAGLDRVNIEHLAGRSVAEQNFVLKHVKFLHDAGVSVNLILYLSTQEETVQNFIVKNVHYLYGEGFDTEFIFTFARLGERERAFLLAERSKALGRDFSKLNLNL
>NZ_CP006569.1|WP_025423441.1|3787357_3788014_+|carbonate-dehydratase
MKDISTLISNNQDWSKLLHEEDPGFFEKLSLAQKPRFLWIGCSDSRVPAEKLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHYGCGGIQAAIDNPELGLIDNWLLHIRDLWYKHSSLLGELHPEDRANILSEINVIEQVYNLGHSTIMRSAWKRGQKVTIHGWVYALHDGLLRDLEITATSRETLEQRYRQGMATLLQRYGS
>NZ_CP006569.1|WP_025423452.1|3802494_3803478_+|hypothetical-protein
MDIISSPPLSIILNSGWALTSSRITRIIQARTLDDASHMGLIDRLYDRFFRQGGKRAAITRLYRQLSQPGAGEPHDLTPTTMVARFMQLRAYANSEYRKVFQLSLRYDPLGQAPWSYLMQIGDYQIYQSPPLDYRLDNHLAEVCTMKVCLSLDDVLAEIREQLTPERYIQSQIESMADAPAVRQKLHAVLDDPAYGRENLLGITNGDDSACIVAHYRHDSLAFANRCATHDEFRGSRLKTALLTTDYPNLRALCLVGYMTKEDTLLKYLARPHLLQLVDYIGDAIHRPEVRRLLARFPVGETTACELFNLTPPDNDASAARQPLGAQ
>NZ_CP006569.1|WP_025423453.1|3803527_3804955_-|dihydrolipoyl-dehydrogenase
MSTEIKTQVVVLGAGPGGYSAAFRCADLGLETVLVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALSKNGIVFGEPQTDIDKVRTWKEKVVNQLTGGLSGMAKARKVKVVNGYGQFTGANTLQVEGENGTTTITFDNAIIAAGSRPIQLPFIPHDDPRVWDSTDALALTTVPKRLLVMGGGIIGLEMATVYHALGSEIDVVEMFDQVIPAADKDVVKVFTKRISSHFNLMLETKVTAVEAKEDGVYVSMEGKKAPSEAQRYDAVLVAIGRVPNGKLLDAGQAGVEVDDRGFIRVDKQMRTNVPHIYAIGDIVGQPMLAHKGTHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYEVATFPWAASGRAIASDCQDGMTKLIFDKESHRVIGGAVVGVNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEVYEGTITDLPNAKAKKKK
>NZ_CP006569.1|WP_025423454.1|3805185_3807102_-|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase
MAIEINVPDIGADEVEVTEVLVSVGDKVDAEQSLITVEGDKASMEVPSPQAGVVKELKVAVGDKVTTGKLIMVFEEAEGGAEKPAAAPKQADSAPAAKPAAAGGAAQSKEVNVPDIGGDEVEVTEVLVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKELKVNTGDKVNTGSLIMVFEVAGGGSDAAPAEAEAPQAQQQSAPAQSGGSQDVNVPDIGGDEVEVTEVMVKVGDKISAEQSLITVEGDKASMEVPAPFAGTVKEIKINVGDKVSTGSQIMVFEVEGAAPAPAAAKESAAAVAPAPASDANKSAAAAPSPAQGKGEFAENDAYVHATPVIRRLAREFGVNLAKVKGTGRKGRILREDIQAYVKEAVKRAEAAPAAAGGGTLPGLLPWPKVDFSKFGDTEEVELGRIQKISGANLHRNWVMIPHVTQFDEADITEVEAFRKQQNAEAEKKKLDVKITPLVFIMKAVAKGLEELPRFNSSLSEDAQKLTLKKYINIGVAVDTPNGLVVPVFRDVNKKGIVELSRELAEISKKARAGKLTSSDMQGGCFTISSLGGIGGTAFTPIVNAPEVAILGVSKSSIKPVWNGKEFAPRLMLPLSLSYDHRVIDGADGARFISFINNVMSDIRRLVM
>NZ_CP006569.1|WP_025423455.1|3807117_3809784_-|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MSERLYNDVDPIETRDWLQAIESVIREEGIERAQFLIDQVLDEARKGGVSIAQGAAGRNYINTIPVEEEPEYPGNLELERRIRSAIRWNAVMTVLHASKKDLELGGHMASFQSSATIYEVCFNHFFRARNDKDGGDLVYFQGHISPGVYARAFLEGRLSEDQMNNFRQEVHGKGLSSYPHPKLMPEFWQFPTVSMGLGPISAIYQAKFLKYLDHRALKDTSNQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFIINCNLQRLDGPVTGNGKIINELEGVFGGAGWEVIKVVWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKNGAYVREHFFGKYPETAALVKDMSDDEIWALNRGGHDPKKIYAALQKAKKTTGKPVVILAHTIKGYGMGVTAEGMNIAHQVKKMNMEGVRYFRDRFNLSTITDDKIEALPYITFAEGSEEHTYLHERRKALHGYLPSRLKDFTKPLELPTLEDFAPLLEEQKKEISTTIAFVRVLNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYREDEKGQILQEGINELGAASSWLAAATSYSTNDLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLTRMYGDKPENVYYYLTTLNENYAMPAMPKGAEEGIRKGIYRLETLEGGKGKVQLMGSGAILRHVREAAQILSKEYGVGSDVYSVTSFTELARDGQDCERWNMLHPTETPRVPYVATVLNDAPAVASTDYMKLFAEQIRNFIPASEFRVLGTDGFGRSDSRENLRHHFEVDASYVVVAALGELAKRGDIGADVVAQAISKFGIDADKVNPRLA
>NZ_CP006569.1|WP_025423456.1|3809911_3810676_-|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR
MAYSKIRQPKLSDVIEQQLEYLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQGGGTFVQSNLWQSFSDPLTELLAEHPESQYDLLETRHALEGIAAYYAALRGTEQDFEHIRECHQAIQAAQDSGDLDAEADAVMNYQIAVTEAAHNAVLLHLVRCMGPMLENNVRQNFELLYSRREMLAQVSSHRAGIFAAIVAREPEKAREASHRHLAFIEEILLDLGREHSRRERSLRRLQQRKD
>NZ_CP006569.1|WP_025423457.1|3811243_3812611_+|amino-acid-permease
MEGQQRAETLKRGLKNRHIQLIALGGAIGTGLFLGIAQTIQMAGPSVILGYAIGGVIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGNFAGFASGWNYWVLYVLVAMAELSAVGIYMQYWWPGLPTWVSAAVFFLLINAINLANVKLYGEMEFWFAIIKVIAIVAMIVFGAWLLLSGRGGPEASVTNLWAQGGFFPHGGKGLLMAMAVIMFSFGGLELVGITAAEADDPAHSIPKATNQVIYRILIFYIGALAILLSLYPWGKVVEGGSPFVLIFQALNSYWVANILNLVVLTAALSVYNSCVYSNSRMLYGLARQGNGPQSLARVDRRGVPVAALGVSAVATAICVLLNYLMPGQAFGLLMALVVSALVINWSMISLAHWKFRRKKAQQGVVPRFPALWYPLGNCLCLLFMAGILAIMLLTPGMAISVYLIPVWLVVLGIGFALKTSGQRAAAR
>NZ_CP006569.1|WP_081730474.1|3813891_3818364_+|hypothetical-protein
MKKFTVNNQYRKPIGKHVNWADDKQKSQLPFDDQVKLLASQPGLHSRNVTRHNVANLTLLAMTYLTNVQNSSLSAASSTPNPRALAFNDKGGNVNFKAPKPEIPSHENRLNHRPFPVEKGKSGTMIDIKKREMINNLSGSSNETRERTRTKTESHSLSFPQAEAMSVKAHSHPDRNSIRSSLIDCLKNSATAVAQQHAHVAVAEKNLPNSRASVTPAKTPVAWPSPAAKDKPEALNLPAKHAIPRQTTKKPLPAPERDPLKHSLLPKARPLRHAPQLQVGSRRARSLYGQNTLSDLEPPHPAVQQNDDRNIDHSAESGPDKTRHHKRERRALLNDIENVLDMLAVYRKQNHNELLSRSMSQWQNQQLAAWLNFPFSARNAKHIVANTLLFLVQDQVKQHAVAQKLLYSAGNYGGDDNEPLTVAEDEKVIYYWLSANLFPESIEQFILDTISSLQAENYKKRQGVVSVADLGMKITTEINRMFDFLNHEQQNVIADYLLHHTVSVDFPLFKIPEWQTLDVMSFDTQLIHVGLKYADIQNADPKRLNQNEYKAIGIALYEGIMTAKIPAMLAEHFLLPARIDIFYLSQTQPYRHREIVEWEHKKRLSNYFKHLGHHIQSNNIIEDYINIQKLWRTREQIAQSIKDDCLKKTEHHTLNNEIKGKFCIKKFYDNKGKVRKYYDLLPNDLEMYHMLVESMTKHYGQVIDLVLRNAFYNLSENEILFLAQATLSQIEATEYVITRERDKFNLSHRSSYRCKPHRLLLKAEMSAEARWYSIDFNGAPSVILRENNLDRYCNQDNPFRDRHDGNAKRSIYDPRIFPLNPNNSINNLKSHSEPIDVFFAGVVKHFKQQYFTVLYDSGFSQTAFEKFIGFLTSLIPFYNCAEEIENKHVAAATIDCSIDILSLIPGVGSLGKMLANLGRKTVLNLLRKTSIKAWTPRVLKKNIRKAFISALKSEYKMTEKYMKALTKAFMRQIDPGFELIYSIGRSGVRNIRKVLREFNHIPHVSSALYKLEKFSPMQPFLQGATSGKPLVVKHGQTRLSLLALEGRQFLQHPLYLANSVSTERFIRKKYVLSQLNYPLRVGPGELKNFGHCIAKRDGIKRKCVKAFNYLSLNQKLIRADNHLRLNDLIQASPFLHQSYKLLGLTKKRAIPAFANSYENYLTKLFSVSTIGALDSLSEVEIIERWIEFNVKHAAKPALDELKSFTIKTLAHSEVFVAEQTIRIRYRRLHGAITSLSTTPVARYANGPNSRAKVYDPSASANPIQAPTAGEEASTATHGIIIHGNQRFQTEVIKHLDTINTLPSGKRLIERLEHKKVDIIPPSYSDVRRVVSKQGEKVFLSDNSCNGKSIIFDPENDIMGTNVEDLANEPWRARNPAIALYHEMLHSYFHYHHQNIYDLTGKKVFKVNGGSTLLDEARITGTVYKHKGHEFNFYDSGYLSTIDDDTKYFTENNFRKELAQLYRHDHYYIRPVYGSGAEQIRIKQYKIKLSK
>NZ_CP006569.1|WP_158500166.1|3818582_3819605_+|hypothetical-protein
MFKFLTNMYEKRFPSRGYVPVMDVEDTNNEIPRPLPLVLEQQLQIWMQNGMQRKEQRAAAGNKIRQCHHAKEETIDLSHFNLSEWPPYLPPTLRKIDASHNAFQQFPPASLVQLESLDLSHNRLTQLPAVYSAPLSRLNISHNALSSLPTPLYESLEHLRVNNNPLNSLDSLSSASLKWLEARNCGLQHFSATTPALTHLDLSENHITSPPPAWPETLQRLKLSHNKLTHLGRLPDSVGQLNADDNLLVELPNPPPKNLRFIDISHNQLRRLFDPEKALLQVLKADHNLINTVPAAFSRKECDTRLWLSDNPLTEETKNRLRVSNRAISAFDSALPRIVL
>NZ_CP006569.1|WP_025423461.1|3819820_3820675_-|beta-lactamase-regulator-AmpE
MTLFTLLLVLAWERFFKHGEHWQLDRWLERPFSRLRETSLAQTLILVLCWMLLVAVCLRLASGWLYSLPLQLLWIVLGVLCIGAGGIRRHYRDYLIAAARGDGDASKAMSEELALIHGLPVEGAPVERLRELQNALLWINFRFYLAPLFWLVIGGPWGPVPLAGYAFLRAWQTWLARRSTPMKRARSGIDLLLHWLDWLPVRLAGAAYALLGHGEKALPAWFASLWDIHSSQYQVLTRLAQFSLAREPHLDAVQTPRAAVSLAKKVTLVIVVVVALLTIYGALV
>NZ_CP006569.1|WP_025423462.1|3820691_3821249_-|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD
MRLDNGWIAGVRRVPSPHCDDRPATVVPTLLVVHNISLPPGRFGGPWIDRLFTGTLDPAIDPYFATIWRLRVSAHCLIRRDGEVVQYVPFHRRAWHAGVSCYQGRERCNDFSIGIELEGTDTLGYTDAQYRALVDVTRLLLRHYPITPARITGHSDIAPERKTDPGPSFSWRDFRQLLSTQADDI

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Crispr_ID: NZ_CP006569_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006569_14

4143649-4143765

Orphan

Consensus_repeat	Method
AACCGGCTCATGCACCGAGCGCCGGTAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006569_14

>merge|NZ_CP006569|14|4143649-4143765|CRISPRCasFinder
CATTGACTCACGCACCGAGCGCCGGCAATTCCCCGGCAAAACAGAACCGGCTCATGCACCGAGCGCCGGTAATGACCCAGCAAAACAGAACCGGCTCACGCACCGAGCGCCGGTAAT

>NZ_CP006569|14|14|4143649-4143765|CRISPRCasFinder
CATTGACTCACGCACCGAGCGCCGGCAAT	TCCCCGGCAAAACAGAACCGGCTCATGCACCGAGCGCCGGTAATGACCCAGCAAAACAG
AACCGGCTCACGCACCGAGCGCCGGTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006569.1\|WP_025423725.1\|4141597_4142419_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
NZ_CP006569.1\|WP_025423728.1\|4143787_4144807_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NZ_CP006569.1\|WP_025423726.1\|4142559_4142919_-\|bifunctional-dihydroneopterin-aldolase/7,8-dihydroneopterin-epimerase	unknown	unknown	gnl\|CDD\|183219
NZ_CP006569.1\|WP_025423723.1\|4139333_4139954_+\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|182809
NZ_CP006569.1\|WP_025423717.1\|4130778_4131444_+\|epimerase	unknown	unknown	gnl\|CDD\|187560
NZ_CP006569.1\|WP_025423737.1\|4155333_4155669_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006569.1\|WP_038668790.1\|4154028_4155330_-\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_CP006569.1\|WP_025423734.1\|4151045_4151342_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225495
NZ_CP006569.1\|WP_025423720.1\|4133039_4134473_-\|bifunctional-D-glycero-beta-D-manno-heptose-7-phosphate-kinase/D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase-HldE	unknown	unknown	gnl\|CDD\|183085
NZ_CP006569.1\|WP_025423731.1\|4147499_4149347_+\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549
NZ_CP006569.1\|WP_025423730.1\|4145599_4147348_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_CP006569.1\|WP_025423733.1\|4150734_4151046_+\|toxin-HigB-2	unknown	unknown	unknown
NZ_CP006569.1\|WP_025423722.1\|4137635_4138931_-\|inorganic-triphosphatase	unknown	unknown	gnl\|CDD\|225569
NZ_CP006569.1\|WP_025423732.1\|4149461_4149962_-\|G/U-mismatch-specific-DNA-glycosylase	unknown	unknown	gnl\|CDD\|182301
NZ_CP006569.1\|WP_001144069.1\|4145256_4145472_+\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NZ_CP006569.1\|WP_025423718.1\|4131468_4132122_-\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	unknown	unknown	gnl\|CDD\|235119
NZ_CP006569.1\|WP_025423721.1\|4134754_4137568_-\|bifunctional-[glutamate--ammonia-ligase]-adenylyl-L-tyrosine-phosphorylase/[glutamate--ammonia-ligase]-adenylyltransferase	unknown	unknown	gnl\|CDD\|236836
NZ_CP006569.1\|WP_148296325.1\|4153311_4153668_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006569.1\|WP_025423724.1\|4140055_4141303_+\|multifunctional-CCA-addition/repair-protein	unknown	unknown	gnl\|CDD\|182810
NZ_CP006569.1\|WP_025423716.1\|4129866_4130649_-\|4,5-DOPA-dioxygenase-extradiol	unknown	unknown	gnl\|CDD\|182598

Protein	Function_ID	Function_description	E-value
NZ_CP006569.1\|WP_025423725.1\|4141597_4142419_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	1.28822e-111
NZ_CP006569.1\|WP_025423728.1\|4143787_4144807_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0
NZ_CP006569.1\|WP_025423726.1\|4142559_4142919_-\|bifunctional-dihydroneopterin-aldolase/7,8-dihydroneopterin-epimerase	gnl\|CDD\|183219	PRK11593, folB, bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase.	2.32038e-63
NZ_CP006569.1\|WP_025423723.1\|4139333_4139954_+\|SH3-domain-containing-protein	gnl\|CDD\|182809	PRK10884, PRK10884, SH3 domain-containing protein; Provisional.	3.26391e-138
NZ_CP006569.1\|WP_025423717.1\|4130778_4131444_+\|epimerase	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	8.63228e-64
NZ_CP006569.1\|WP_038668790.1\|4154028_4155330_-\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.35162e-154
NZ_CP006569.1\|WP_025423734.1\|4151045_4151342_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225495	COG2944, COG2944, Predicted transcriptional regulator [Transcription].	5.03601e-20
NZ_CP006569.1\|WP_025423720.1\|4133039_4134473_-\|bifunctional-D-glycero-beta-D-manno-heptose-7-phosphate-kinase/D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase-HldE	gnl\|CDD\|183085	PRK11316, PRK11316, bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE.	0
NZ_CP006569.1\|WP_025423731.1\|4147499_4149347_+\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
NZ_CP006569.1\|WP_025423730.1\|4145599_4147348_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_CP006569.1\|WP_025423722.1\|4137635_4138931_-\|inorganic-triphosphatase	gnl\|CDD\|225569	COG3025, COG3025, Uncharacterized conserved protein [Function unknown].	9.18112e-129
NZ_CP006569.1\|WP_025423732.1\|4149461_4149962_-\|G/U-mismatch-specific-DNA-glycosylase	gnl\|CDD\|182301	PRK10201, PRK10201, G/U mismatch-specific DNA glycosylase.	9.34677e-99
NZ_CP006569.1\|WP_001144069.1\|4145256_4145472_+\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	8.25342e-17
NZ_CP006569.1\|WP_025423718.1\|4131468_4132122_-\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	gnl\|CDD\|235119	PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional.	2.26447e-156
NZ_CP006569.1\|WP_025423721.1\|4134754_4137568_-\|bifunctional-[glutamate--ammonia-ligase]-adenylyl-L-tyrosine-phosphorylase/[glutamate--ammonia-ligase]-adenylyltransferase	gnl\|CDD\|236836	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase.	0
NZ_CP006569.1\|WP_025423724.1\|4140055_4141303_+\|multifunctional-CCA-addition/repair-protein	gnl\|CDD\|182810	PRK10885, cca, multifunctional CCA addition/repair protein.	0
NZ_CP006569.1\|WP_025423716.1\|4129866_4130649_-\|4,5-DOPA-dioxygenase-extradiol	gnl\|CDD\|182598	PRK10628, PRK10628, LigB family dioxygenase; Provisional.	3.14672e-167

>NZ_CP006569.1|WP_025423726.1|4142559_4142919_-|bifunctional-dihydroneopterin-aldolase/7,8-dihydroneopterin-epimerase
MDIVFIEQLTVMAVIGVYDWEQQRLQKLVFDLEMGWDNRPAARSDDVADCLSYADVTEAVLSLVNGKRFALVERVAEETAERLMTQFKLPWIRVKIGKPGAVPQAANVGVVIERGRRKV
>NZ_CP006569.1|WP_025423725.1|4141597_4142419_-|undecaprenyl-diphosphate-phosphatase
MADMHEWVIAFILGVVEGLTEFLPVSSTGHMILVGSLLGFTDDKAKTFEVIIQLGSILAVVVVFWRRLFGLIGIHFGQVPHEGIGSGRLRLGHILLGMIPAVVLGLVFHEQIKAIFAPQYVMYALVVGGLLLLAGEWLKPKQPRAAGIDDLTYLQAFLIGCFQCLALWPGFSRSGATISGGLLVGVSRYAASEFSFILAVPMMLGATVLDLYKSLPFLAWQDFPMFAIGFVTAFVVALLAIKFFLQIIKRISFVPFAIYRFILAAVVYWVLVG
>NZ_CP006569.1|WP_025423724.1|4140055_4141303_+|multifunctional-CCA-addition/repair-protein
MKKYLVGGAVRDGILQLPVTERDWVVVGATPQDMLAQGYQQVGKDFPVFLHPKSREEYALARTERKSGQGYTGFICYSSPEVTLEEDLRRRDLTINAIARDDQGNLIDPYQGQRDIRQRWLRHVSDAFGEDPLRVLRVARFAARFAHLNFRIAPETLALMQHMTNELPLLAPERVWKETERALATRNPQVYFQVLRDCGALKTLFPEVDALFGVPAPAKWHPEIDTGIHTLMTVSMAARLSDDIAVRFATLCHDVGKALTPRELWPSHHGHGPAGVKVVEGLCQRLKVPNPLRDLAKIVAQYHDLLHGAESLTPKTLVKLFSAIDVWRRPERLEQMILASEADARGRTGFENHPYPQGDFLREAFRVAASVIARDVITAGFNGAEIGEELTRRRQQALASWKRQQASSDTETIQD
>NZ_CP006569.1|WP_025423723.1|4139333_4139954_+|SH3-domain-containing-protein
MLKLRHIYFAALGLGLACAASADEQRYVSDDLLTYIHSGPGNQYRIVGTLNSGDAVTLIGQNDDAGFAQVRDEKGRTAWIPLDQLSAQPSLRTRVPALEQQVQDLTQKLNTLDASWNQRTADMQKKVATSDGVINDLKKQNQALKDQLTTAQKKVNAAAVQLDDKQRTIIMQWFMYGGGVAGVGLLLGLLLPHIIPRRKKDNRWMN
>NZ_CP006569.1|WP_025423722.1|4137635_4138931_-|inorganic-triphosphatase
MNEEIELKFIVQPETLPALRQRLSATGHDGHALRQLTNTYFETDGFDLRRHGIGLRIRQVDGQYEMTMKTAGQVIGGLHQHPEYNVPLPGPMLELQRLPAQAWPEGLSPAALQSRLKPLFTTDFAREKWRVTQGESQIEVALDRGEVSAGSLSEPICELEMELLSGNARDLFTFARTLSDAGGLRLGSLSKAARGYHLQRGNPARAIRPLPLLNPAARATVEEGMSAALHLALDHWQYHEELWLRDDPQAKVGVMEGITLIRETFRVMGNLVRRKATTALRALLADIMPLIAAERADPQAICYLPVYLQTKLALTSWLMFSVWQNTADEATRKKLAGAYRQFADMTLARCGAELKVAFGRTLSDEEYLQQLPRLERRLMAFHVLSGAYRPTEVVAYLMHWKALHQSIVQQGPEDREHLRRQALAQVGFWLK
>NZ_CP006569.1|WP_025423721.1|4134754_4137568_-|bifunctional-[glutamate--ammonia-ligase]-adenylyl-L-tyrosine-phosphorylase/[glutamate--ammonia-ligase]-adenylyltransferase
MMTRPLPPILQQQGQQTAAALPAPADDAAISALAMSDFISDALITHPAWLQELAAQPPRPGEWRDYAGLLASRLAAVDDETALMRELRLFRRRTLVRIGWAQILGLCDTGETLTQLSQLAETLIIAARDWLWQACCREWGTPCGADGTPQPLLILGMGKLGGGELNFSSDIDLIFAYPENGFTRGGRRELDNAQFFTRLGQRVIKALDQPTVDGFVYRVDMRLRPFGDSGPLVLSFAALEDYYQEQGRDWERYAMIKARLMGGDGDRYSQELRSMLRPFIFRRYIDFSVIQSLRNMKQMIAREVRRRGLKDNIKLGAGGIREIEFIAQVFQLIRGGREPRLQARALLPTLAAIGELGLLAPAQSARLGAAYLYLRRLENLLQGINDQQTQTLPADALNQARLAWGMDEADWPQLTRRLAAHMQAVRAVFDELIGDDAPDAEDNDTPGAAAALWLEPMSQASEADVAGIPWPRLAQHVADFRRDVAKRTLGPRGREVLDALMPRLLTHIGDGDTADVAFERLAPVLLSIVSRTTYLELLLEYPGALGHLIRLCAASPMIASQLARHPLLLDELLDPATLYHPPAPSAYGDELRQYLLRVPEEDEEQQLEALRQFKQAQQLRIAAADIAGVLPVMQVSDHLTYLAEAMIHAVIQQAWKSMVARHGRPSHLGAGQDAGFAVIGYGKLGGWELGYSSDLDLVFLHQCPDDAITDGPRVIDGRQFYLRLAQRVMHLFSTRTPAGVLYEVDARLRPSGAAGMLVSTLAAFEDYQLNEAWTWEHQALVRARMVYGTSALQEGFNAIRRRVLCRGRDPATLRREVSEMRAKMRQHLASKQSDVFDIKTDEGGITDIEFLAQYLVLRHAAEKPELTRWSDNVRIFELMAQHGIIDGDDADGLRASYTTLRDTLHHLALQALPGRVPVSQFARERALIGRCWRQWLD
>NZ_CP006569.1|WP_025423720.1|4133039_4134473_-|bifunctional-D-glycero-beta-D-manno-heptose-7-phosphate-kinase/D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase-HldE
MKVTLPDFRRAGVLVVGDVMLDRYWYGPTSRISPEAPVPIVKVDAIEERPGGAANVAMNIAALGCHSRLVGLTGIDDAARALGARLSEVAVTCDFVAVATHPTITKLRVLSRNQQLIRLDFEQGFDDVDAAPMLERIQLALPKTGALVLSDYAKGALARVREMITLARAAGVPVLVDPKGTDFSRYQGATLLTPNLSEFEAVAGACKDEETLVSRGMKIIADYQLSALLITRSEQGMTLLQPGKEPLNLPTQAQEVYDVTGAGDTVIGVLAAALAAGNSLEESCFLANAAAGVVVGKLGTSTVSPIELENAIRGRAETGFGVMTESELKQAVALARQRGEKVVMTNGIFDILHAGHVSYLANARRLGDRLIVAVNSDDSTKRLKGESRPVNPLAQRMTVLAALEAVDWVVPFSEDTPQRLIADVLPDVLVKGGDYQPHQIAGSKEVWDNGGEVLVLNFEDGCSTTNIINAIKRGERG
>NZ_CP006569.1|WP_025423718.1|4131468_4132122_-|3,4-dihydroxy-2-butanone-4-phosphate-synthase
MNQTLLSEFGSPLQRVENALEALRNGRGVLVLDDEDRENEGDMIFAAENMTVEQMALTIRHGSGIVCLCLTEERRQQLALPMMVERNSSHYQTAFTVTIEAAEGVSTGVSAADRLTTIRAAIKDNAKPTDLNRPGHVFPLRAQPGGVLVRGGHTEAAVDLTTLAGLKPAGVLCEVTNDDGTMAHAPEIVAFARHHGMPVLTIEDLVTYRRALAREVS
>NZ_CP006569.1|WP_025423717.1|4130778_4131444_+|epimerase
MKTALLFGASGLVGGNLLSILLGHRAYGQVIAVVRRELPLRHPQLIQLIGDIDTLPAQADALAAQDVFIALGTTRKNSPDRRDYYRIDHDYPLLAARLALEQGARSLSLVSAVGASVGSYASYLRIKGETERDIIALRAAQTHLFQPGMILGERQERRPLERGLNRVWPRLDPLLRGRAKKYRAITAADIAAAMVAAAQLSTDEVMIYTWQEMRSLALAAH
>NZ_CP006569.1|WP_025423716.1|4129866_4130649_-|4,5-DOPA-dioxygenase-extradiol
MSSPRMPALFLGHGSPMNVLEDNRYTHTWQQLGQTLPRPKAIVAISAHWYTQGTAVTAMAQPRTLHDFGGFPQALFDKRYPAPGSPALAQHVQSLLAPVAVHADTGEWGLDHGTWGVLIKMYPEADIPVVQLSIDATRDAAYHFALGRKLAALRDEGVMLVASGNVVHNLRTVRWQDEAEPYPWALSFDQFVRENLSAQEEPHPLIAYRQHQDAALSNPSPEHFLPLLYVLGSRIGDEPVTVPVDGITLGSISMLSVQVG
>NZ_CP006569.1|WP_025423728.1|4143787_4144807_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MHVLGIETSCDETGVAIYDQHQGLLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQAALAQAGMQASDIHGVAYTAGPGLVGALMVGATVGRALAYAWRVPAVAVHHMEGHLLAPMLEANPPAFPFVALLVSGGHTQLIAVTGIGEYRLLGESIDDAAGEAFDKTAKLLGLDYPGGPMLARLAQQGVPGRYTFPRPMTDRPGLAFSFSGLKTFAANTVRAGADDHQTRADIARAFEDAVVETLMIKCRRALDLTGFSRLVMAGGVSANHSLRASLGEMMRQRGGEVFYARPEFCTDNGAMIAYAGMVRLQGGTREDLAVSVRPRWPLEELPALGA
>NZ_CP006569.1|WP_001144069.1|4145256_4145472_+|30S-ribosomal-protein-S21
MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY
>NZ_CP006569.1|WP_025423730.1|4145599_4147348_+|DNA-primase
MAGRIPRVFINDLLARTDIVDLIDARVKLKKQGKNFHACCPFHHEKTPSFTVNGEKQFYHCFGCGAHGNAIDFLMNYDRLEFVESIEELAAQHGLEVPYETGSGPNQQERHQRQSLYQLMDKLSGFYQQALKAPTATQADHYLQRRGLSEAVIAHFAIGFAPPGWDNVIKRFGRSAEDRAALNDAGMLVVNDTGRTYDRFRERIMFPIRDKRGRVIAFGGRILGEGQPKYLNSPETDIFHKGRQLYGLYEAQRQHPELSRLLVVEGYMDVVALAQFGIDYAVASLGTSTTADHIQLLYRATDRVICCYDGDRAGREAAWRALENALPYLSDGRQLRFMFLPEGEDPDTLVRKIGKEAFEQRIEQAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLIGQVPGETLRLYLRQQLGNKLGILDDSQLEKLLPKAALKANISPQPRIKRTTMRILIGLLVQHPRLSALVPTVQGLEQANLPGVPLFIELVEACQAQPGLTTGQLLEHYRESKFSSQLETLATWNHMIIDEMIEATFVDTLASLYDSILEHRQEALIARDRTHGLTAEERQELWSLNQALAKKT
>NZ_CP006569.1|WP_025423731.1|4147499_4149347_+|RNA-polymerase-sigma-factor-RpoD
MEQNPQSQLKLLVTRGKEQGYLTFAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLLLAETTSDTDEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLITGFVDPNAEEDMAPTATHIGSELSADEIADDDDEDEEDGDDDSTDDDNSIDPELARQKFVELREQYEITRNVIKTNGRSHAKSAAEILNLSDVFKQFRLVPKQFDYLVNNMRAMMDRVRTQERLIMKLCVEISKMPKKNFVTLFAGNETSESWFKAALAMNKPWSEKLHEVDDDVHRSLQKLRQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD
>NZ_CP006569.1|WP_025423732.1|4149461_4149962_-|G/U-mismatch-specific-DNA-glycosylase
MMEDILRQGLRVVFCGINPGLSSAHKGVHFANPNNRFWKTIHLAGFTSSQLRPEEEQRLLETGCGITMLVARPTTEASELSLAEYRQGGERLMAKIETYQPQALAILGKQAYCQAFQVRNAPWGRQERRIGVTQLWVLPNPSGLNRMSGDALLAAYRALADTLPPY
>NZ_CP006569.1|WP_025423733.1|4150734_4151046_+|toxin-HigB-2
MLFIETHIFTEDVKELLNDDEYREFQQFMADNPDWGDVIQNTGGLRKIRWAARGKGKRGGVRVIYYHKVTESQIRLLLIYKKGVQDDLSEGDKRQLRALTEGW
>NZ_CP006569.1|WP_025423734.1|4151045_4151342_+|helix-turn-helix-domain-containing-protein
MEKKLFERLKESMMQMNEIIEGSREPSRETNVIAVKVKAIRTATGLSQSGFAKLISVNVDTLKNWEQGRREPTGPAKALLKAIERDPLHVIPALSAKP
>NZ_CP006569.1|WP_148296325.1|4153311_4153668_+|hypothetical-protein
MNNFYRLMFALIFLPLMSLGITKQSNAYQLKGKVTGLLATNDKCYVAIHDDNDKYYSDQWHLAKSDAICHFAKMAYLMNISVITEVDIDFAPANANNIQSIEISNRKVTWPPYTEDNK
>NZ_CP006569.1|WP_038668790.1|4154028_4155330_-|MHS-family-MFS-transporter
MSDPKRSALASTVGTALEWYDFALYGMASALIFPYVFFPEMSGAYGVLASFATFGVGFFARPFGGLIVGSLGDKLGRRGMLFFTLVLMAVSTTLIGLIPAYHTIGLWAPILLVICRLGQGFAAGGEYSGAVLLSAEHAGKKNRGLFASIPGAGNALGSIIASLAIIAVQQMPKEEMISWGWRIPFVASFVIGIVGIWIRIGVAESPEFNAAKATHPAKRLPLFEIIQRKPRNFIGAFLLSIGPNVTSYLPSAFALTYLVAHVGVDKSVGVMGVMICNFIKFITVPSAGALSDKFGAKKVFLAGAFGLGVLMVPFFLLLNTGEQGLIWLGMFLIYCLCNDAMLGAQAAMLSEAFPPHIRYTGMASSRELAGAIAGGTLPFIAVALQSSAGGEWWPIAVYAISLAILAAIGALLLNQGHHDWQDQPTRNETATEY
>NZ_CP006569.1|WP_025423737.1|4155333_4155669_-|hypothetical-protein
MKEFYTSVIELRQPISRQFSSEPYECGWANEALFFLTVHPDIADFNTIVVRPKISPDGVHWVNAPGDATLISEPGLTAIAQSHFGGWLRLELSLEGAAQTAMITLHLALKG

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Crispr_ID: NZ_CP006569_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006569_15

4674094-4674195

Unclear

Consensus_repeat	Method
TCGCGCCAGCGAAACTTTCGCCACGGAGAAA	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP006569_15

>merge|NZ_CP006569|15|4674094-4674195|CRISPRCasFinder
TCGCGCCAGCGAAACTTTCGCCACGGAGAAAGGATGACATCGCACGGCCCTCAGCCGGCATTCGAGCCGCTTCGCGCCAGCGAAACTTTCGCCACGGGAAAA

>NZ_CP006569|15|15|4674094-4674195|CRISPRCasFinder
TCGCGCCAGCGAAACTTTCGCCACGGAGAAA	GGATGACATCGCACGGCCCTCAGCCGGCATTCGAGCCGCT
TCGCGCCAGCGAAACTTTCGCCACGGGAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006569.1\|WP_025424146.1\|4675192_4675630_-\|D-tyrosyl-tRNA(Tyr)-deacylase	unknown	unknown	gnl\|CDD\|235383
NZ_CP006569.1\|WP_025424156.1\|4685096_4686509_+\|nitrogen-regulation-protein-NR(I)	unknown	unknown	gnl\|CDD\|182842
NZ_CP006569.1\|WP_025424144.1\|4672322_4674014_+\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|282957
NZ_CP006569.1\|WP_025424155.1\|4684038_4685088_+\|nitrogen-regulation-protein-NR(II)	unknown	unknown	gnl\|CDD\|182947
NZ_CP006569.1\|WP_025424152.1\|4679381_4680155_+\|DNA-binding-transcriptional-repressor-DeoR	unknown	unknown	gnl\|CDD\|182644
NZ_CP006569.1\|WP_025424139.1\|4665749_4666025_+\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744
NZ_CP006569.1\|WP_038668862.1\|4670797_4672183_+\|uracil-xanthine-permease	unknown	unknown	gnl\|CDD\|225142
NZ_CP006569.1\|WP_025424147.1\|4675583_4676495_-\|virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|179313
NZ_CP006569.1\|WP_025424136.1\|4662343_4662745_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319923
NZ_CP006569.1\|WP_025424145.1\|4674214_4675156_-\|fatty-acid-biosynthesis-protein-FabY	unknown	unknown	gnl\|CDD\|370533
NZ_CP006569.1\|WP_025424149.1\|4677415_4678747_-\|L-fucose:H+-symporter-permease	unknown	unknown	gnl\|CDD\|340952
NZ_CP006569.1\|WP_025424135.1\|4660992_4661937_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP006569.1\|WP_025424134.1\|4660072_4660993_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP006569.1\|WP_025424142.1\|4668396_4670481_+\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
NZ_CP006569.1\|WP_025424138.1\|4665071_4665695_+\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NZ_CP006569.1\|WP_025424140.1\|4666045_4668151_+\|bifunctional-GTP-diphosphokinase/guanosine-3',5'-bis-pyrophosphate-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236843
NZ_CP006569.1\|WP_025424154.1\|4682480_4683899_+\|glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|181884
NZ_CP006569.1\|WP_025424153.1\|4680300_4682112_-\|ribosome-dependent-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NZ_CP006569.1\|WP_025424148.1\|4676550_4677138_-\|glucose-1-phosphatase	unknown	unknown	gnl\|CDD\|181872
NZ_CP006569.1\|WP_025424137.1\|4664262_4664688_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670

Protein	Function_ID	Function_description	E-value
NZ_CP006569.1\|WP_025424146.1\|4675192_4675630_-\|D-tyrosyl-tRNA(Tyr)-deacylase	gnl\|CDD\|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	1.28152e-93
NZ_CP006569.1\|WP_025424156.1\|4685096_4686509_+\|nitrogen-regulation-protein-NR(I)	gnl\|CDD\|182842	PRK10923, glnG, nitrogen regulation protein NR(I); Provisional.	0
NZ_CP006569.1\|WP_025424144.1\|4672322_4674014_+\|AsmA-family-protein	gnl\|CDD\|282957	pfam05170, AsmA, AsmA family. The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.	2.2313e-20
NZ_CP006569.1\|WP_025424155.1\|4684038_4685088_+\|nitrogen-regulation-protein-NR(II)	gnl\|CDD\|182947	PRK11073, glnL, nitrogen regulation protein NR(II).	0
NZ_CP006569.1\|WP_025424152.1\|4679381_4680155_+\|DNA-binding-transcriptional-repressor-DeoR	gnl\|CDD\|182644	PRK10681, PRK10681, DNA-binding transcriptional repressor DeoR; Provisional.	1.25954e-170
NZ_CP006569.1\|WP_025424139.1\|4665749_4666025_+\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	4.81688e-22
NZ_CP006569.1\|WP_038668862.1\|4670797_4672183_+\|uracil-xanthine-permease	gnl\|CDD\|225142	COG2233, UraA, Xanthine/uracil permeases [Nucleotide transport and metabolism].	3.64397e-143
NZ_CP006569.1\|WP_025424147.1\|4675583_4676495_-\|virulence-factor-BrkB-family-protein	gnl\|CDD\|179313	PRK01637, PRK01637, virulence factor BrkB family protein.	2.89948e-162
NZ_CP006569.1\|WP_025424136.1\|4662343_4662745_-\|VOC-family-protein	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.94657e-37
NZ_CP006569.1\|WP_025424145.1\|4674214_4675156_-\|fatty-acid-biosynthesis-protein-FabY	gnl\|CDD\|370533	pfam09500, YiiD_C, Putative thioesterase (yiiD_Cterm). This entry consists of a broadly distributed uncharacterized domain often found as a standalone protein. The member from Shewanella oneidensis is described from crystallography work as a putative thioesterase because it belongs to the HotDog clan of enzymes. About half of the members of this family are fused to an Acetyltransf_1 domain pfam00583.	8.37954e-64
NZ_CP006569.1\|WP_025424149.1\|4677415_4678747_-\|L-fucose:H+-symporter-permease	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.30556e-128
NZ_CP006569.1\|WP_025424135.1\|4660992_4661937_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.21036e-106
NZ_CP006569.1\|WP_025424134.1\|4660072_4660993_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.06497e-86
NZ_CP006569.1\|WP_025424142.1\|4668396_4670481_+\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP006569.1\|WP_025424138.1\|4665071_4665695_+\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	1.1005e-131
NZ_CP006569.1\|WP_025424140.1\|4666045_4668151_+\|bifunctional-GTP-diphosphokinase/guanosine-3',5'-bis-pyrophosphate-3'-pyrophosphohydrolase	gnl\|CDD\|236843	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase.	0
NZ_CP006569.1\|WP_025424154.1\|4682480_4683899_+\|glutamate--ammonia-ligase	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	0
NZ_CP006569.1\|WP_025424153.1\|4680300_4682112_-\|ribosome-dependent-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NZ_CP006569.1\|WP_025424148.1\|4676550_4677138_-\|glucose-1-phosphatase	gnl\|CDD\|181872	PRK09456, PRK09456, ?-D-glucose-1-phosphatase; Provisional.	3.61184e-145
NZ_CP006569.1\|WP_025424137.1\|4664262_4664688_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	9.60218e-18

>NZ_CP006569.1|WP_025424144.1|4672322_4674014_+|AsmA-family-protein
MKFIGKLLISLLLILLLLIVLIYMLLQTTWGAGWLGRQLTRHSGYQVSLGNINHSWTQFREIQLDNVSLGKKGALPTLVAKRVVAELGTQQLTDPWHVNRLQLQDGTLNLDPAAPAWPLQADTLQLNGMAVRAPHGEWRLNGQNVNAGISPWRPQAGYPLGRQARFQLSARSLTLNGVPAQNVLVQGEINNQALTLDNLGADLYQGELTGTARRATDGSWQVDSLRLSNVRLQSDKTLHDFLRQVFSVPKITLRRADLIDARMEGLNWAFNDLDLTLRDMTFQDGDWSAQDGSLSFNASDLINGGVHLTDTLANMTFSPQGVEIRQFSGRWERGLLRTSGRWLRQEHRLALDELMIAGLEYTLPANWRASWLQSLPPWLAGVSVERLSANRNLIIDITPAFPFQITALDVTGRQLVLARDHQWGVWSGSMTLNGSDATFNKTDVRQPSLTLDATGDTLNISELSAFTGEGLLEATAAFSQRPARDFTLSLNGRAVAANVLHNWGWPTLPLTGNVNLKLQLRGQMTAAAPLKPSLNGTLQAQSTTGQTLNQTLRHGEVTAAPAP
>NZ_CP006569.1|WP_038668862.1|4670797_4672183_+|uracil-xanthine-permease
MTSPVINTAPASADSAPSELIYRLDDRPPLPQTLFAACQHLLAMFVAVITPALLICQALGLPADDTRHIISMSLFASGLASLLQIKTWGPVGSGLLSIQGTSFNFVTPLIMGGLALKNGGADVPTMMAALFGTLMVASCTEILLSRVLHLARRIITPLVSGIVVMIIGISLIQVGLTSIGGGFAALNDHTFGAPKNLMLAGVVLLVIILLNRQRNPYLRVASLVIAMVVGYLLAWATGMLPPSAPATAQPLIVVPTPLYYGLGFDWNLLVPLMLVFMVTSIETIGDITATSDVSEQPVRGPLYMQRLKGGVLANGLNSMLSAVFNTFPNSCFGQNNGVIQLTGVASRYVGFVVALMLIALGLFPAVSGVVQHIPEPVLGGATIVMFGTIAASGVRIVSRERLNRRAIMIIALSLAIGLGVSQQPLILQFAPQWLKTLLSSGIAAGGITAIILNILFPPEKN
>NZ_CP006569.1|WP_025424142.1|4668396_4670481_+|ATP-dependent-DNA-helicase-RecG
MTEGRLLNAIPLNTLSGIGPSLVSKFARLGLESLQDLLLHLPARYEDRTKLYPIGEALPGMTVTVQGEVLNSDISFGRKRMLTCRLRDDSGVLTLRFFHFNAAMKNSLSPGQWVTAYGEIRRGQLGGEIIHPEYHVISERSQVTLAAALTPVYPTTEGVRQATLRSAIDQALKLLDITPVPELLPPELSGALMSLADALRMLHRPPPEISLDDLALGRHPAQRRLILEELLAHNLSMLAVRAGVQKDRALPLRADNLLSRRFLAALPFSPTGAQRRVVAEITQDLARDVPMMRLVQGDVGSGKTLVAALAALCAISDGRQVALMAPTELLAEQHAQNFRDWFAPLGIEVGWLAGKQKGKARQAQQEAISDGRVSMVVGTHAIFQEQVRFAGLALVIIDEQHRFGVHQRLALWEKGVAQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRAEIIQRVRQACLQEQRQAYWVCTLIEESDVLEAQAAEATWQELQSALPELRVGLVHGRMKALEKQQLMQAFKAGEVQLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKSPLSKTAQSRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGNAEFRVADLLRDQAMIPEVQRLARHIHQHHPDSARALIERWMPERVRYTFA
>NZ_CP006569.1|WP_025424140.1|4666045_4668151_+|bifunctional-GTP-diphosphokinase/guanosine-3',5'-bis-pyrophosphate-3'-pyrophosphohydrolase
MYLFESLNLLIQRYLPEDQIKLLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMRLDHETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVVLIKLADRTHNMRTLGALRPDKRRRIARETLEIYSPLAHRLGIHHLKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILAEIEGRLTEAGIPCRVSGREKHLYSIYCKMHLKEQRFHSIMDIYAFRVIVSEVDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEQGETGTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQSLTSGQTVEIITAPGARPNAAWLNFVVSSKARAKIRQMLKNLKRDDSVSLGRRLLNHALGGSRKLVEMAPENIQRELDRMKLATLEDLLAEIGLGNAMSVVIAKNLQGDRSNLTPPVGPRTLPIKGADGVLITFAKCCRPIPGDPIIAHVSPGKGLVVHHESCRNIRGYQKEPEKFMPVEWEMVSEQEFIAEIKVDMFNHQGALANLTASINAANSNIQSLNTEEKDGRVYSAFIRLTTRDRIHLANIMRKIRIMPDVIRVNRNRN
>NZ_CP006569.1|WP_025424139.1|4665749_4666025_+|DNA-directed-RNA-polymerase-subunit-omega
MARVTVQDAVEKIGNRFDLVLVAARRARQIQVGGKDPLVAEENDKYTVIALREIEEGLITNQILDLRDRQEQQEQEAAEIQAVTAIAEGRR
>NZ_CP006569.1|WP_025424138.1|4665071_4665695_+|guanylate-kinase
MIQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRAMRPGEAHGQHYFFVPVAEFERMIAEDAFLEHAQVFGNYYGTSRETIEQVLATGVDVFLDIDWQGAQQIRGKMPDARSIFILPPSKEELDRRLRGRGQDSEEVIARRMAQAVAEMTHFAEYDYLIVNDDFNTALLDLKTIIRAERLRLERQKLRHDALISKLLAD
>NZ_CP006569.1|WP_025424137.1|4664262_4664688_+|MarR-family-transcriptional-regulator
MDKSTDISVMVESLSRIYHRLRKEVNGQLVNEGLSMSKMKILHLITTGKTSATDIKNYMGFSSRTVVTVLDALEKEEMLQRQQSPTDRRVKYVYITEKGREKLRIAEQTHKVILDRMFAPLSEMQLEKFSEVCNVLEAQQK
>NZ_CP006569.1|WP_025424136.1|4662343_4662745_-|VOC-family-protein
MFSHIQLGVRDLTRMQQFYDSVLAELGLVRVAEERAGEAGVIWRRADRRWPQFVLRAPLNGLPATWANGSQVSFAAPSPDAAAAAWSVALTLGAINEGEPGLRPQYAPDFYGAYCRDPEGNKLCFVYADGVNG
>NZ_CP006569.1|WP_025424135.1|4660992_4661937_-|ABC-transporter-permease
MLIYLLRRLLLAASVMLVAVSLLFCLVFLVPGDPASVALGPRASEAQKQALRVTMGLDQPAPVQIGRFLARVVRGDLGEDVLTHRPVAQLIARALPNTLVLALCAIGWAMALGIPLGCWAALRQNSWADRIIGVLSISVIALPAFVVAIYALLIFSVTLKWFPAIGAGHRGDVASQLHALVLPSLTVALGWIGYLSRLVRASMLEVLKENHIRTFRAFGMPDRLIALRYALPIAVVPVVSVLGVGIGSLLSGAVLTEIVFARPGLGKLAFDSVISRNFPVVMGTVVVTSGLYVLANLIADVINTCLDPRVRQEL
>NZ_CP006569.1|WP_025424134.1|4660072_4660993_-|ABC-transporter-permease
MIELSTPVAGSPAQNAATPPRMGLYRVLRQVWSTGIGRFALICVVALMLCALFAPWLAPHNPIAIKAVLRLKGPSMAYWLGNDQLGRDILSRLIYGTRIAMMVAFAGTGGALLLGSLLGLVAGYGPRQLDTLLMLLCDSLMSIPMILFALAVVTLAGSSLATIILIIITFMVPGYFRVVRSQTRVLKRMEYIVAARAMGASPVSVVVRHLIPNLTGTLLVMVAMDIPAVIAIESGLSFLGQGIQPPDASWGTVLNDGYSYIRQAPHMVIAAGMPIVLATLGFTFLGEALRDALDPRTHSHTGGDRP
>NZ_CP006569.1|WP_025424145.1|4674214_4675156_-|fatty-acid-biosynthesis-protein-FabY
MYHLRVPETEQELQQYYQFRWEMLRKPLHQPPGSERDAYDGMAHHQMVVDEQGQPVAVGRLYVNADNEASIRFLAVHPQVQDKGLGTLVAMTLESVARQEGVKRVVCSAREDAVAFFAKLGFVNQGEIITPSTTPIRHFLMIKPIVTLDDILHRPDWCGQLQQAWYQHIPLSEKMGVRISQYTGQKFMTTMPESGNQNPHHTLFAGSLFSLATLTGWGLIWLLLRERQLGGTIILADAHIRYIKPVIGRPGAVADLGSLSGDLDRLAQGRKARVQLEVELYGNDIKGAIFEGVYLVLPPSLDIPLERGGSNAG
>NZ_CP006569.1|WP_025424146.1|4675192_4675630_-|D-tyrosyl-tRNA(Tyr)-deacylase
MIALIQRVTQASVTIDNEVAGAIGPGLLILLGVERQDDEQRAAKLCERVLAYRIFSDEQGKMNLNVHQSGGSVLVVSQFTLAADTDRGLRPGFSRGAAPADARRLYDDFTDRCRQAGIRTETGRFGADMQVALVNDGPVTFWLQV
>NZ_CP006569.1|WP_025424147.1|4675583_4676495_-|virulence-factor-BrkB-family-protein
MTGLRLKKLMPVLHFIRHLGKRVYRDDITVLAGHLAYVSLLSLVPLVTVIFALFAAFPVFSDVSIELRHFIFTNFMPATGDVIQRYLEQFILNSSRMTAVGTCGLIVTALLLIYSVDTVLNSIWRSKNKRPIIFSFAVYWMVLTLGPLLAGASMVLSSYLFSLTWLNASGVSGVMTLLLRVFPLLLSCASFWLLYSLVPTVRVPARDALVGALVAGALFELGKKAFGLYVTLFPSYQLIYGVLAVIPILFLWVYWSWCIVLLGAEITASLSEHRQVAAHHAAQIARNSDDSVDTTGHAGQRHH
>NZ_CP006569.1|WP_025424148.1|4676550_4677138_-|glucose-1-phosphatase
MLYIFDLGNVVIDIDFNRVLGVWSNFSRVPLATLQKEFVMGEAFEQHERGDITDEAFAAKICGELGIALSFEQFTAGWQAVFVGLRPEMVEILTRLREQGHRVVILSNTNRLHCDYWPSQYPEVQECVDKLYLSQDLGMRKPDPAIYRYVLEQEGATADGSVFFDDNADNIAAARQVGIRSVHVTDREVVPAFFA
>NZ_CP006569.1|WP_025424149.1|4677415_4678747_-|L-fucose:H+-symporter-permease
MPQPTVQLADGYLNRTPIFQFILLSCLFPLWGCAASLNDILITQFKSVFALSDFASALVQSAFYGGYFLIAIPASLVIRSSSYKLAIILGLTLYIIGCALFYPAARMATYTMFLAAIFAISIGLSFLETAANTYSAMIGHRDYATLRLNISQTFYPVGALMGIVLGKYLVFDEGDSLESRMASMTAQQIHAFRLTMLENTLEPYKYLIMVLLGVLLLFMLTRFPHCKPQAVQRHAAPGMAETLRYLAGNQRFRRGVLAQFLYVGLQVAVWSFTIRLALTLGADNERHASNFMIYSFIGFFIGKFIANCLMTRCNVQKVLIAYSVIGVAMLAYVMLVPNFSAVYAAVGVSALFGPCWATIYTGTLKTVENRYTEVAGAVIVMSIVGAAIVPALQGYVSDYLGSMQRSFGVSLLCFAFVGYYFWGELRHQERRRTALPAAAQGKF
>NZ_CP006569.1|WP_025424152.1|4679381_4680155_+|DNA-binding-transcriptional-repressor-DeoR
MEMRREERINRLRQALKRTDKLHLKDAAALLGVSEMTVRRDLSAESTSVVLLGGYVVTAPHNNPVTRYFVSDQQARHVDEKAQAGRLAAALVEPDETLFFDCGTTTPFIIDAIDDDLPFTAVCYSLNTFLALREKPRCNAILCGGRYHPANATFTPLTTHSPLDDICPTKSFFSAAGLCLQSGATCFHFDELALKQRALAMAQHAILVVDHGKFDCVRPARIGPLTAFSALITDRRPDQKFVDYCRQQAIMLRYDGI
>NZ_CP006569.1|WP_025424153.1|4680300_4682112_-|ribosome-dependent-GTPase-TypA
MIENLRNIAIIAHVDHGKTTLVDKLLQQSGTLGDRNDATERVMDSNDLEKERGITILAKNTAINWRDYRINIVDTPGHADFGGEVERVMSMVDSVLLLVDAMDGPMPQTRFVTQKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLGATDEQLDFPIVYASALNGIAGLEHEEMADDMTPLFESIVKNVEAPKVDVDGPFQMQISQLDYNSYVGVIGVGRIKRGSVKPNQNVTVVDSEGKRRNGKVGQVLGHMGLQRIESKLAEAGDIIAITGLGELNISDTICDPAQVEALPPLTVDEPTVSMSFGVNTSPFCGKEGKYVTSRQILERLNKELVHNVALRVEETEDPDTFRVSGRGELHLSVLIENMRREGFEIAVSRPKVIFRTVDGAKQEPFESVTLDIEEQHQGPVMEAMGIRKGEMRDMLPDGKGRIRLDYVIPSRGLIGFRTDFLTMTSGTGLLYSTFSHYDDVRPGEIGQRQNGVLISNGQGKAVAYALYSLQDRGRLFLGHGAEVYEGQIIGIHTRSNDLTVNCLTGKKLTNMRASGTDEATTLVPAIKMSLEQALEFIDDDELVEVTPQSIRLRKRHLTENERKRANRS
>NZ_CP006569.1|WP_025424154.1|4682480_4683899_+|glutamate--ammonia-ligase
MSVEQVMSMLKEHEVKFIDLRFTDTKGKEQHVTIPAPVKKEEVDDFFEEGKMFDGSSIGGWKGINESDMVLMPDASSAVMDPFYEESTLIIRCDILEPATMQGYDRDPRSIAKRAEDFLKSSGIADQVLFGPEPEFFLFDDIRFGTSISGSHVAIDDIEAAWNTGKAYEGGNKGHRPGVKGGYFPVPPVDSSQDLRSTMCLTMAEMGLVVEAHHHEVATAGQNEVATRFNTLTKKADEIQIYKYVVHNVAHAFGKTATFMPKPIFGDNGSGMHCHMSLSKDGNNLFSGDKYGGLSEAALFYIGGVIKHAKAINALTNPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVVASPKARRIEVRFPDPAANPYLAFSALLMAGLDGIINKIHPGDAMDKNLYDLPAEEASEIPTVAGSLEEALNALDADREFLTRGGVFTDDTIDAYIALRTEENDRVRMTPHPVEFELYYSV
>NZ_CP006569.1|WP_025424155.1|4684038_4685088_+|nitrogen-regulation-protein-NR(II)
MATGTLPEAGQILNSLITSILLLDNDLAVHYANPAAQQLLAQSSRKLFGTPLPELLGYFSLNVELMRESLDAGQGFTDNEVTLVVDGRAHILSLTAQRLPEETILMELAPMDNQRRLSQEQLQHAQQVAARDLVRGLAHEIKNPLGGLRGAAQLLAKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQQPGMHVTQSIHQVCERVFKLVSLEMPDNVTLVRDYDPSLPELTHDPDQMEQVLLNITRNSLQALGEEGGTITLRTRTAFQLTLHGVRYRLVARIDIEDDGPGIPAQLQDTLFYPMVSGREGGTGLGLSIARSLIDQNSGKIEFNSWPGHTEFSVYLPIRQ
>NZ_CP006569.1|WP_025424156.1|4685096_4686509_+|nitrogen-regulation-protein-NR(I)
MQRGIVWIVDDDSSIRWVLERALTGAGLTCTTFEGGSQVLDALATQTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAVSHYLEQQQPPRSQPASGPTADIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANQIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLELRVQEGRFREDLFHRLNVIRVHLPPLRERREDIPRLARYFLQVAARELGVEPKNLHPETETALTRLPWPGNVRQLENTCRWLTVMAAGQEVLIQDLPPELFETTAPDNVVQSLPDSWATLLAQWADRALRSGHQNLLSEAQPEMERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP006569_9	9.2\|3156268\|40\|NZ_CP006569\|CRISPRCasFinder	3156268-3156307	40	NZ_CP006569.1	3156301-3156340	2	0.95

1. spacer 9.2|3156268|40|NZ_CP006569|CRISPRCasFinder matches to position: 3156301-3156340, mismatch: 2, identity: 0.95

agcaccaccgctgcgggcaccgccgttgccggaagcgccg	CRISPR spacer
agcgccgccgctgcgggcaccgccgttgccggaagcgccg	Protospacer
***.**.*********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP006569_7	7.1\|2433811\|34\|NZ_CP006569\|CRISPRCasFinder	2433811-2433844	34	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	457430-457463	7	0.794
NZ_CP006569_2	2.1\|1415393\|30\|NZ_CP006569\|CRISPRCasFinder	1415393-1415422	30	NZ_CP024792	Nostoc flagelliforme CCNUN1 plasmid pNFSY07, complete sequence	204207-204236	8	0.733
NZ_CP006569_2	2.1\|1415393\|30\|NZ_CP006569\|CRISPRCasFinder	1415393-1415422	30	NZ_CP026682	Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM1, complete sequence	142900-142929	8	0.733
NZ_CP006569_2	2.1\|1415393\|30\|NZ_CP006569\|CRISPRCasFinder	1415393-1415422	30	NZ_CP024793	Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence	235315-235344	8	0.733
NZ_CP006569_3	3.1\|1432825\|30\|NZ_CP006569\|CRISPRCasFinder	1432825-1432854	30	NC_016115	Streptomyces pratensis ATCC 33331 plasmid pSFLA02, complete sequence	76549-76578	9	0.7
NZ_CP006569_7	7.1\|2433811\|34\|NZ_CP006569\|CRISPRCasFinder	2433811-2433844	34	NZ_CP013562	Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence	694174-694207	9	0.735
NZ_CP006569_7	7.1\|2433811\|34\|NZ_CP006569\|CRISPRCasFinder	2433811-2433844	34	NZ_CP013531	Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence	680515-680548	9	0.735
NZ_CP006569_7	7.1\|2433811\|34\|NZ_CP006569\|CRISPRCasFinder	2433811-2433844	34	NZ_CP013584	Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence	680515-680548	9	0.735
NZ_CP006569_7	7.1\|2433811\|34\|NZ_CP006569\|CRISPRCasFinder	2433811-2433844	34	NC_010997	Rhizobium etli CIAT 652 plasmid pC, complete sequence	659578-659611	9	0.735
NZ_CP006569_7	7.1\|2433811\|34\|NZ_CP006569\|CRISPRCasFinder	2433811-2433844	34	NZ_CP029832	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence	10086-10119	10	0.706

1. spacer 7.1|2433811|34|NZ_CP006569|CRISPRCasFinder matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 7, identity: 0.794

tgtacgttgccggcgcagccacggcgcaacagct	CRISPR spacer
tgtcctgcgcgggcgcagccacggcgcaacaggc	Protospacer
*** *  .** ********************* .

2. spacer 2.1|1415393|30|NZ_CP006569|CRISPRCasFinder matches to NZ_CP024792 (Nostoc flagelliforme CCNUN1 plasmid pNFSY07, complete sequence) position: , mismatch: 8, identity: 0.733

tagatttcaagctaccgtgcggcgtatggg	CRISPR spacer
tggatttcaagctaccgtgagccgttgatt	Protospacer
*.***************** * ***  .

3. spacer 2.1|1415393|30|NZ_CP006569|CRISPRCasFinder matches to NZ_CP026682 (Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM1, complete sequence) position: , mismatch: 8, identity: 0.733

tagatttcaagctaccgtgcggcgtatggg	CRISPR spacer
tggatttcaagctaccgtgagccgttgatt	Protospacer
*.***************** * ***  .

4. spacer 2.1|1415393|30|NZ_CP006569|CRISPRCasFinder matches to NZ_CP024793 (Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence) position: , mismatch: 8, identity: 0.733

tagatttcaagctaccgtgcggcgtatggg	CRISPR spacer
tggatttcaagctaccgtgagccgttgatt	Protospacer
*.***************** * ***  .

5. spacer 3.1|1432825|30|NZ_CP006569|CRISPRCasFinder matches to NC_016115 (Streptomyces pratensis ATCC 33331 plasmid pSFLA02, complete sequence) position: , mismatch: 9, identity: 0.7

gaaaatttacctcgtgcgttttctctgcca	CRISPR spacer
ccagggcgacgtcgtgcgttttctctgccc	Protospacer
  *.. . ** ******************

6. spacer 7.1|2433811|34|NZ_CP006569|CRISPRCasFinder matches to NZ_CP013562 (Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence) position: , mismatch: 9, identity: 0.735

tgtacgttgccggcgcagccacggcgcaacagct	CRISPR spacer
agtaagttcccggcgcagccacggccaattggcg	Protospacer
 *** *** ****************  * ..**

7. spacer 7.1|2433811|34|NZ_CP006569|CRISPRCasFinder matches to NZ_CP013531 (Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence) position: , mismatch: 9, identity: 0.735

tgtacgttgccggcgcagccacggcgcaacagct	CRISPR spacer
agtaagttcccggcgcagccacggccaattggcg	Protospacer
 *** *** ****************  * ..**

8. spacer 7.1|2433811|34|NZ_CP006569|CRISPRCasFinder matches to NZ_CP013584 (Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence) position: , mismatch: 9, identity: 0.735

tgtacgttgccggcgcagccacggcgcaacagct	CRISPR spacer
agtaagttcccggcgcagccacggccaattggcg	Protospacer
 *** *** ****************  * ..**

9. spacer 7.1|2433811|34|NZ_CP006569|CRISPRCasFinder matches to NC_010997 (Rhizobium etli CIAT 652 plasmid pC, complete sequence) position: , mismatch: 9, identity: 0.735

tgtacgttgccggcgcagccacggcgcaacagct	CRISPR spacer
agtaagttcccggcgcagccacggccaattggcg	Protospacer
 *** *** ****************  * ..**

10. spacer 7.1|2433811|34|NZ_CP006569|CRISPRCasFinder matches to NZ_CP029832 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.706

tgtacgttgccggcgcagccacggcgcaacagct	CRISPR spacer
ttctcgttgccggcgcagccgctgcgcagcgcgc	Protospacer
* . ****************.* *****.*.  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2922562 : 3019115

Cronobacter_phage(60.0%)

transposase,head,portal,tRNA,protease,tail,integrase,capsid,holin,terminase

attL 2937546:2937561|attR 2952688:2952703

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025422707.1\|2922562_2923465_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	6.4e-105	66.3
WP_158500159.1\|2923466_2923619_-	hypothetical protein	NA	NA	NA	NA
WP_025422708.1\|2924707_2925019_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_025422709.1\|2925018_2925315_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_025422710.1\|2925960_2926293_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_025422711.1\|2926318_2926609_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_025422712.1\|2927143_2927593_-	hypothetical protein	NA	NA	NA	NA
WP_025422713.1\|2927701_2929378_-	hypothetical protein	F1BUJ7	Cronobacter_phage	1.5e-203	62.7
WP_025422714.1\|2929374_2929914_-	hypothetical protein	F1BUJ9	Cronobacter_phage	2.6e-61	69.8
WP_025422715.1\|2929885_2930611_-	hypothetical protein	F1BUK1	Cronobacter_phage	2.1e-58	48.1
WP_025422716.1\|2930600_2931032_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	1.0e-28	47.1
WP_025422717.1\|2931034_2933131_-	hypothetical protein	F1BUK3	Cronobacter_phage	1.7e-140	74.9
WP_025422718.1\|2933140_2933728_-	hypothetical protein	F1BUK5	Cronobacter_phage	4.0e-84	76.7
WP_025422719.1\|2933720_2934905_-	hypothetical protein	F1BUK6	Cronobacter_phage	1.8e-171	75.8
WP_025422720.1\|2934901_2935231_-	DUF2590 family protein	F1BUK8	Cronobacter_phage	6.4e-39	75.2
WP_025422721.1\|2935227_2937195_-\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	2.8e-254	67.2
WP_038668558.1\|2937191_2937380_-	hypothetical protein	NA	NA	NA	NA
WP_025422722.1\|2937382_2937640_-	hypothetical protein	A5X9I7	Aeromonas_virus	1.8e-20	59.8
2937546:2937561	attL	NA	NA	NA	NA
WP_025422724.1\|2937786_2938119_-	hypothetical protein	F1BUL2	Cronobacter_phage	1.5e-32	68.2
WP_025422725.1\|2938118_2938460_-	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	2.5e-46	83.2
WP_025422726.1\|2938456_2938753_-\|holin	holin	C7BGD7	Burkholderia_phage	2.6e-15	50.6
WP_025422727.1\|2938762_2939218_-	DUF2597 family protein	F1BUL4	Cronobacter_phage	2.5e-57	72.2
WP_025422728.1\|2939214_2940342_-	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	4.2e-170	80.0
WP_025422729.1\|2940338_2941043_-	hypothetical protein	F1BUL6	Cronobacter_phage	6.6e-73	62.5
WP_025422730.1\|2941039_2941522_-\|tail	phage tail protein	F1BUL7	Cronobacter_phage	1.3e-35	48.6
WP_025422731.1\|2941518_2941971_-\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	1.2e-46	61.3
WP_025422732.1\|2942020_2942758_-\|terminase	terminase	F1BUM0	Cronobacter_phage	1.3e-60	50.4
WP_025422733.1\|2942771_2943800_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	3.7e-133	71.1
WP_025422734.1\|2943834_2944671_-\|capsid	phage capsid scaffolding protein	F1BUM4	Cronobacter_phage	1.2e-44	48.7
WP_025422735.1\|2944813_2946595_+\|terminase	terminase	F1BUM5	Cronobacter_phage	5.4e-249	70.1
WP_038668562.1\|2946591_2947611_+\|portal	phage portal protein	F1BUM7	Cronobacter_phage	2.6e-131	67.0
WP_071882023.1\|2947610_2947940_+	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	3.3e-27	59.2
WP_025422737.1\|2947974_2950632_-	hypothetical protein	A0A077K8T2	Ralstonia_phage	1.1e-237	46.3
WP_025422738.1\|2951278_2951641_+	helix-turn-helix transcriptional regulator	A0A2H4JFL3	uncultured_Caudovirales_phage	2.5e-20	50.0
WP_025422739.1\|2951649_2952651_+\|integrase	tyrosine-type recombinase/integrase	P79671	Haemophilus_phage	8.4e-106	57.9
WP_025422740.1\|2954240_2954789_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
2952688:2952703	attR	NA	NA	NA	NA
WP_025422741.1\|2954847_2956680_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_011411001.1\|2956672_2957329_-	UvrY/SirA/GacA family response regulator transcription factor	NA	NA	NA	NA
WP_025245199.1\|2957987_2958212_+	DUF2594 family protein	NA	NA	NA	NA
WP_025422742.1\|2958334_2958679_+	GlpM family protein	NA	NA	NA	NA
WP_025422743.1\|2958982_2960014_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_025422744.1\|2960999_2961185_+	GhoT/OrtT family toxin	NA	NA	NA	NA
WP_025422745.1\|2962393_2963107_+	PAS domain-containing protein	NA	NA	NA	NA
WP_025422746.1\|2963549_2965487_-	acyltransferase	C6ZR20	Salmonella_phage	1.1e-69	31.8
WP_025422747.1\|2966663_2967374_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_025422748.1\|2968194_2968452_+	DUF1883 domain-containing protein	NA	NA	NA	NA
WP_071882074.1\|2968899_2969076_-	general stress protein	Q9KX95	Enterobacteria_phage	1.9e-05	89.7
WP_025422749.1\|2969554_2970154_+	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
WP_025422750.1\|2970273_2970483_+	hypothetical protein	NA	NA	NA	NA
WP_025422751.1\|2971235_2971439_+	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_148296288.1\|2971563_2971854_-	hypothetical protein	NA	NA	NA	NA
WP_025422753.1\|2972300_2972567_-	hypothetical protein	NA	NA	NA	NA
WP_025422754.1\|2972798_2973716_-	nitrogen assimilation transcriptional regulator	NA	NA	NA	NA
WP_025422756.1\|2974819_2976379_+	hypothetical protein	NA	NA	NA	NA
WP_148296289.1\|2976531_2977602_+	hypothetical protein	NA	NA	NA	NA
WP_025422759.1\|2978008_2979994_-	hypothetical protein	NA	NA	NA	NA
WP_025422760.1\|2981194_2981854_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	6.2e-49	56.8
WP_025422761.1\|2981979_2982306_+	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA
WP_025422762.1\|2982609_2982894_-	acylphosphatase	NA	NA	NA	NA
WP_025422763.1\|2982984_2984175_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_025245018.1\|2984251_2984569_+	heat shock protein HspQ	NA	NA	NA	NA
WP_025422764.1\|2984701_2985115_-	CoA-binding protein	NA	NA	NA	NA
WP_025422765.1\|2985294_2985939_+	DUF2057 domain-containing protein	NA	NA	NA	NA
WP_025422766.1\|2986034_2986496_+	methylglyoxal synthase	NA	NA	NA	NA
WP_025422767.1\|2986567_2988622_-	DNA helicase IV	A7KV33	Bacillus_phage	7.9e-18	25.1
WP_025422768.1\|2988775_2989222_+	YccF domain-containing protein	NA	NA	NA	NA
WP_025422769.1\|2989240_2991370_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_025422770.1\|2991388_2991988_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_025422771.1\|2992183_2992690_+	cell division inhibitor SulA	NA	NA	NA	NA
WP_025422772.1\|2993042_2994125_+	porin OmpA	NA	NA	NA	NA
WP_025422774.1\|2997195_2998473_+	hypothetical protein	NA	NA	NA	NA
WP_025422775.1\|2998785_2999244_-	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_025422776.1\|2999449_3001201_+\|protease	Lon protease family protein	NA	NA	NA	NA
WP_025422777.1\|3001266_3001785_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_071882025.1\|3001884_3002049_-	ribosome modulation factor	NA	NA	NA	NA
WP_025422778.1\|3002318_3002981_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_025422779.1\|3002980_3004621_-	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_025422780.1\|3004607_3005885_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_025422781.1\|3005952_3007875_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	4.8e-49	28.8
WP_038668570.1\|3007878_3010005_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_025422782.1\|3010108_3011215_+	MOSC domain-containing protein	NA	NA	NA	NA
WP_025422783.1\|3011268_3011817_-	cell division protein ZapC	NA	NA	NA	NA
WP_025422784.1\|3011985_3012996_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_025422785.1\|3013275_3015894_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	1.8e-19	21.5
WP_148296291.1\|3016183_3017407_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_025422787.1\|3017714_3019115_+\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	3.9e-77	34.0

DBSCAN-SWA_2

3313074 : 3375032

Morganella_phage(15.52%)

tRNA,protease,tail,integrase,capsid,terminase

attL 3366676:3366694|attR 3379175:3379193

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025423019.1\|3313074_3313452_-	hypothetical protein	A0A077SK24	Escherichia_phage	7.4e-31	53.1
WP_025423020.1\|3313628_3314741_-	acyltransferase	A0A193GZ69	Enterobacter_phage	2.4e-05	25.2
WP_148296300.1\|3315850_3316033_-	hypothetical protein	NA	NA	NA	NA
WP_025423023.1\|3316218_3316932_+	PAS and helix-turn-helix domain-containing protein	Q2A088	Sodalis_phage	7.5e-16	32.0
WP_025423024.1\|3316988_3317360_-	hypothetical protein	K7P6F7	Enterobacteria_phage	5.1e-16	39.3
WP_025423025.1\|3317493_3318306_-	hypothetical protein	A0A2H4N7C5	Pectobacterium_phage	1.0e-40	39.8
WP_025423026.1\|3318305_3320711_-	hypothetical protein	A0A2H4N7A3	Pectobacterium_phage	1.8e-125	40.5
WP_148296301.1\|3320776_3321766_-	hypothetical protein	E7EKV8	Edwardsiella_phage	2.5e-25	47.8
WP_025423028.1\|3321775_3322453_-	hypothetical protein	NA	NA	NA	NA
WP_038668632.1\|3322455_3322734_-	hypothetical protein	NA	NA	NA	NA
WP_025423029.1\|3322733_3325862_-	host specificity protein J	A0A1W6JNW2	Morganella_phage	1.5e-294	48.7
WP_025423030.1\|3326026_3326248_+	hypothetical protein	NA	NA	NA	NA
WP_025423031.1\|3326379_3326721_-	hypothetical protein	E5AGC2	Erwinia_phage	1.1e-41	67.3
WP_158500162.1\|3326764_3327043_-	hypothetical protein	NA	NA	NA	NA
WP_025423033.1\|3327450_3327822_-	type II toxin-antitoxin system death-on-curing family toxin	A0A222YZ88	Escherichia_phage	3.6e-22	47.5
WP_025423034.1\|3327818_3328043_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_025423035.1\|3328196_3329117_-	hypothetical protein	NA	NA	NA	NA
WP_025423036.1\|3329165_3329498_-	hypothetical protein	NA	NA	NA	NA
WP_025423037.1\|3329579_3330143_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.3e-38	45.2
WP_025423038.1\|3330079_3330823_-	C40 family peptidase	A0A1W6JNU8	Morganella_phage	1.5e-72	52.1
WP_025423039.1\|3330832_3331537_-\|tail	phage minor tail protein L	A0A1W6JNT8	Morganella_phage	7.8e-74	57.9
WP_025423040.1\|3331558_3331888_-\|tail	phage tail protein	A0A1W6JNT2	Morganella_phage	9.7e-19	43.6
WP_025423041.1\|3332175_3335355_-\|tail	phage tail tape measure protein	A0A2H4J107	uncultured_Caudovirales_phage	1.5e-100	38.0
WP_158500163.1\|3335428_3335752_-	DUF2513 domain-containing protein	NA	NA	NA	NA
WP_025423043.1\|3335839_3336073_-	hypothetical protein	NA	NA	NA	NA
WP_025423044.1\|3336093_3336540_-	hypothetical protein	A0A1B0Z0C9	Vibrio_phage	4.5e-19	40.0
WP_025423045.1\|3336582_3337527_-	hypothetical protein	NA	NA	NA	NA
WP_148296302.1\|3337532_3337943_-	hypothetical protein	NA	NA	NA	NA
WP_025423047.1\|3337952_3338402_-	HK97 gp10 family phage protein	A0A2H5BHH1	Acinetobacter_phage	9.8e-14	33.3
WP_025423048.1\|3338401_3338758_-	hypothetical protein	A0A1Q1PUL5	Escherichia_phage	9.5e-12	38.8
WP_025423049.1\|3338759_3339242_-	hypothetical protein	G8C7P9	Escherichia_phage	9.1e-42	57.0
WP_025423050.1\|3339256_3339847_-	hypothetical protein	K7PGW6	Enterobacterial_phage	2.3e-79	68.9
WP_025423051.1\|3339828_3341280_-	glycosyltransferase family 2 protein	F1C5E6	Cronobacter_phage	8.4e-224	74.2
WP_025423052.1\|3341321_3342296_-	hypothetical protein	A0A2H4JIE6	uncultured_Caudovirales_phage	8.9e-145	78.2
WP_025423053.1\|3342307_3343006_-	hypothetical protein	A0A1W6JNU9	Morganella_phage	2.6e-45	66.5
WP_025423054.1\|3343095_3343482_-	hypothetical protein	Q6UAR9	Klebsiella_phage	3.1e-08	32.8
WP_025423055.1\|3343548_3344616_-\|capsid	minor capsid protein	A0A1W6JNT7	Morganella_phage	4.6e-62	37.9
WP_025423056.1\|3344596_3346006_-	DUF4055 domain-containing protein	A0A1W6JNV0	Morganella_phage	3.1e-175	67.6
WP_025423057.1\|3346007_3347489_-\|terminase	terminase	A0A1W6JNY3	Morganella_phage	8.5e-248	80.7
WP_025423058.1\|3347488_3348007_-\|terminase	terminase small subunit	I6PDJ6	Cronobacter_phage	2.0e-66	74.7
WP_025423059.1\|3348170_3348698_-	Rha family transcriptional regulator	G8C7W4	Escherichia_phage	1.4e-48	55.8
WP_025423060.1\|3349324_3349591_-	hypothetical protein	NA	NA	NA	NA
WP_051440240.1\|3349732_3349978_-	hypothetical protein	NA	NA	NA	NA
WP_025423062.1\|3350025_3350376_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	2.4e-23	55.0
WP_025423063.1\|3350372_3350840_-	glycoside hydrolase family protein	H9C148	Vibrio_phage	3.7e-24	41.8
WP_025423064.1\|3350836_3351100_-	hypothetical protein	NA	NA	NA	NA
WP_148296303.1\|3351096_3351504_-	hypothetical protein	NA	NA	NA	NA
WP_025423066.1\|3351649_3352060_-	type II toxin-antitoxin system HicB family antitoxin	F1C593	Cronobacter_phage	1.9e-40	61.8
WP_025423067.1\|3352108_3352285_-	type II toxin-antitoxin system HicA family toxin	A0A0M3LQ86	Mannheimia_phage	2.7e-12	60.3
WP_025423068.1\|3352479_3353214_-	DNA-binding protein	G3EN85	Psychrobacter_phage	5.3e-33	39.6
WP_038668639.1\|3353291_3353840_-	Bro-N domain-containing protein	H6WRU8	Salmonella_phage	1.1e-35	61.9
WP_051440179.1\|3353868_3354501_-	HNH endonuclease	A0A0N9ESC4	Pseudomonas_phage	1.2e-14	41.9
WP_038668642.1\|3354595_3354991_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_025423072.1\|3354998_3355388_-	antitermination protein	Q777W5	Enterobacteria_phage	1.9e-45	65.4
WP_025423073.1\|3355384_3355981_-	recombination protein NinG	A0A1P8DTE0	Proteus_phage	1.4e-63	64.9
WP_025423074.1\|3356143_3356479_-	hypothetical protein	NA	NA	NA	NA
WP_025423075.1\|3356488_3356938_-	DUF1367 family protein	A0A096XEN2	Escherichia_phage	6.9e-52	62.4
WP_025423076.1\|3356953_3357241_-	hypothetical protein	A0A2H5BQE8	Pseudomonas_phage	2.5e-07	44.4
WP_025423077.1\|3357332_3357587_-	DUF4752 family protein	E5AGF6	Erwinia_phage	1.2e-16	47.6
WP_025423078.1\|3357592_3357853_-	hypothetical protein	A0A1W6DXQ0	Salmonella_phage	1.2e-11	63.5
WP_025423079.1\|3357849_3358050_-	hypothetical protein	NA	NA	NA	NA
WP_025423080.1\|3358049_3358901_-	ATP-binding protein	K7PLU3	Enterobacteria_phage	1.2e-92	61.5
WP_025423081.1\|3358904_3359783_-	replication protein	K7PGT1	Enterobacteria_phage	1.9e-61	47.5
WP_025423082.1\|3359834_3360131_-	hypothetical protein	A0A220NRS4	Escherichia_phage	4.6e-20	57.1
WP_071882034.1\|3360275_3360491_-	helix-turn-helix transcriptional regulator	A0A0M4RTV8	Salmonella_phage	7.7e-25	78.9
WP_025423083.1\|3360606_3361275_+	LexA family transcriptional regulator	A0A0M4QWY1	Salmonella_phage	5.1e-83	66.5
WP_025423084.1\|3361608_3362232_+	DUF4065 domain-containing protein	D0UIM3	Aggregatibacter_phage	3.8e-16	39.4
WP_025423085.1\|3362231_3362609_+	hypothetical protein	NA	NA	NA	NA
WP_025423086.1\|3363324_3363573_+	hypothetical protein	NA	NA	NA	NA
WP_025423087.1\|3363580_3364072_+	hypothetical protein	A0A2H4J4Q4	uncultured_Caudovirales_phage	6.2e-38	50.0
WP_025423088.1\|3364108_3364492_+	pentapeptide repeat-containing protein	A0A220NQW1	Salmonella_phage	3.3e-34	59.2
WP_038668649.1\|3364554_3364983_+	hypothetical protein	W6MVG2	Pseudomonas_phage	4.0e-49	65.1
WP_025423089.1\|3365068_3365287_+	hypothetical protein	NA	NA	NA	NA
WP_148296304.1\|3365441_3365810_-	hypothetical protein	NA	NA	NA	NA
WP_071882035.1\|3366085_3366220_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	NA	NA	NA	NA
WP_025423090.1\|3366546_3367167_+	single-stranded DNA-binding protein	A0A1W6JP21	Morganella_phage	4.9e-64	65.2
3366676:3366694	attL	NA	NA	NA	NA
WP_025423091.1\|3367175_3367445_+	hypothetical protein	NA	NA	NA	NA
WP_025423092.1\|3367743_3368049_+	hypothetical protein	NA	NA	NA	NA
WP_025423093.1\|3368048_3368300_+	hypothetical protein	NA	NA	NA	NA
WP_025423094.1\|3368292_3368772_+	hypothetical protein	NA	NA	NA	NA
WP_025423095.1\|3368768_3369035_+	hypothetical protein	A0A0S2SYF0	Pseudomonas_phage	1.5e-06	44.0
WP_025423096.1\|3369031_3369730_+	hypothetical protein	A0A059VF56	Pseudomonas_phage	7.2e-48	47.3
WP_148296305.1\|3369803_3369977_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_025423098.1\|3370182_3370401_+	hypothetical protein	NA	NA	NA	NA
WP_051440182.1\|3370584_3370800_+	hypothetical protein	NA	NA	NA	NA
WP_148296306.1\|3370803_3371178_+	helix-turn-helix domain-containing protein	B9UDM0	Salmonella_phage	6.7e-24	51.6
WP_025423100.1\|3371033_3372194_+\|integrase	site-specific integrase	Q9T1R0	Acyrthosiphon_pisum_secondary_endosymbiont_phage	3.9e-171	73.1
WP_025423101.1\|3372472_3373345_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.0e-30	37.1
WP_025423102.1\|3373347_3373560_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_025423103.1\|3373646_3375032_-\|tRNA	cysteine--tRNA ligase	A0A2K9L6B7	Tupanvirus	9.4e-39	32.3
3379175:3379193	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP006569

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection