CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP007050	Rhizobium leguminosarum bv. trifolii WSM1689 plasmid unnamed, complete sequence	0 crisprs	NA	0	0
NZ_CP007049	Rhizobium leguminosarum bv. trifolii WSM1689 plasmid unnamed, complete sequence	0 crisprs	NA	0	0
NZ_CP007047	Rhizobium leguminosarum bv. trifolii WSM1689 plasmid unnamed, complete sequence	0 crisprs	DEDDh,csa3	0	0
NZ_CP007048	Rhizobium leguminosarum bv. trifolii WSM1689 plasmid unnamed, complete sequence	0 crisprs	NA	0	0
NZ_CP007045	Rhizobium leguminosarum bv. trifolii WSM1689 chromosome, complete genome	2 crisprs	WYL,csa3,cas3,DEDDh	1	5
NZ_CP007046	Rhizobium leguminosarum bv. trifolii WSM1689 plasmid unnamed, complete sequence	0 crisprs	csa3	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007045_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007045_1

802327-802409

Orphan

Consensus_repeat	Method
AATCGATCCAGTGAATCGATTGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007045_1

>merge|NZ_CP007045|1|802327-802409|CRISPRCasFinder
AATCGATCCAGTGAATCGATTGCAGTGGGTGAGCCGCGGTGCCGCCGAAGGCGGCAGTAATCGATCCAGTGAATCGATTGCAG

>NZ_CP007045|1|1|802327-802409|CRISPRCasFinder
AATCGATCCAGTGAATCGATTGCAG	TGGGTGAGCCGCGGTGCCGCCGAAGGCGGCAGT
AATCGATCCAGTGAATCGATTGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007045.1\|WP_155256813.1\|809875_810892_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007045.1\|WP_025393531.1\|810888_812316_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|372641
NZ_CP007045.1\|WP_025393523.1\|804138_805860_-\|DUF4166-domain-containing-protein	unknown	unknown	gnl\|CDD\|379359
NZ_CP007045.1\|WP_025393518.1\|799958_800513_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|222980
NZ_CP007045.1\|WP_011650811.1\|789410_789908_+\|DUF721-domain-containing-protein	unknown	unknown	gnl\|CDD\|227679
NZ_CP007045.1\|WP_025393521.1\|802558_802906_-\|dehydrogenase	unknown	unknown	gnl\|CDD\|226318
NZ_CP007045.1\|WP_025393516.1\|798791_799070_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007045.1\|WP_025393520.1\|801280_802192_+\|DUF1499-domain-containing-protein	unknown	unknown	gnl\|CDD\|377828
NZ_CP007045.1\|WP_025393522.1\|802989_803217_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|368980
NZ_CP007045.1\|WP_025393519.1\|800548_800941_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007045.1\|WP_003546063.1\|799697_799943_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007045.1\|WP_025393515.1\|796045_798754_+\|pyruvate,-phosphate-dikinase	unknown	unknown	gnl\|CDD\|236446
NZ_CP007045.1\|WP_025393527.1\|808354_808819_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007045.1\|WP_020665237.1\|790623_791400_+\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|372611
NZ_CP007045.1\|WP_025393526.1\|807657_808353_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007045.1\|WP_025393525.1\|806320_807238_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293836
NZ_CP007045.1\|WP_025393517.1\|799375_799573_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007045.1\|WP_025393524.1\|805856_806306_-\|DUF393-domain-containing-protein	unknown	unknown	gnl\|CDD\|225556
NZ_CP007045.1\|WP_155256812.1\|808819_809704_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224113
NZ_CP007045.1\|WP_025393514.1\|791718_795180_+\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|224117

Protein	Function_ID	Function_description	E-value
NZ_CP007045.1\|WP_025393531.1\|810888_812316_-\|ATP-binding-protein	gnl\|CDD\|372641	pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.	6.06415e-10
NZ_CP007045.1\|WP_025393523.1\|804138_805860_-\|DUF4166-domain-containing-protein	gnl\|CDD\|379359	pfam13761, DUF4166, Domain of unknown function (DUF4166). This domain is often found at the C-terminus of proteins containing pfam03435.	3.46343e-30
NZ_CP007045.1\|WP_025393518.1\|799958_800513_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|222980	PHA03095, PHA03095, ankyrin-like protein; Provisional.	6.44301e-20
NZ_CP007045.1\|WP_011650811.1\|789410_789908_+\|DUF721-domain-containing-protein	gnl\|CDD\|227679	COG5389, COG5389, Uncharacterized protein conserved in bacteria [Function unknown].	4.55653e-72
NZ_CP007045.1\|WP_025393521.1\|802558_802906_-\|dehydrogenase	gnl\|CDD\|226318	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown].	1.79729e-30
NZ_CP007045.1\|WP_025393520.1\|801280_802192_+\|DUF1499-domain-containing-protein	gnl\|CDD\|377828	pfam07386, DUF1499, Protein of unknown function (DUF1499). This family consists of several hypothetical bacterial and plant proteins of around 125 residues in length. The function of this family is unknown.	5.2524e-06
NZ_CP007045.1\|WP_025393522.1\|802989_803217_-\|DUF1127-domain-containing-protein	gnl\|CDD\|368980	pfam06568, DUF1127, Domain of unknown function (DUF1127). This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.	3.75024e-05
NZ_CP007045.1\|WP_025393515.1\|796045_798754_+\|pyruvate,-phosphate-dikinase	gnl\|CDD\|236446	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional.	0
NZ_CP007045.1\|WP_020665237.1\|790623_791400_+\|DsbA-family-protein	gnl\|CDD\|372611	pfam13462, Thioredoxin_4, Thioredoxin.	5.14832e-48
NZ_CP007045.1\|WP_025393525.1\|806320_807238_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293836	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	2.19438e-90
NZ_CP007045.1\|WP_155256812.1\|808819_809704_-\|AAA-family-ATPase	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.43234e-28
NZ_CP007045.1\|WP_025393524.1\|805856_806306_-\|DUF393-domain-containing-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	7.41824e-33
NZ_CP007045.1\|WP_025393514.1\|791718_795180_+\|chromosome-segregation-protein-SMC	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0

>NZ_CP007045.1|WP_025393520.1|801280_802192_+|DUF1499-domain-containing-protein
MAIRYDRPVSSAARSSRLIGAFSLVLALAVIIAHRFGGLATPYLVLLLIVAAGCALLAAMLAAIGLRSLWMTGAEGGLAALAALIYAAFPLALGAYATERYLTLPDIYDVSTDPVSAPDWLSYPYFDQIWLKRKVQVTPEDREKQLTAYPELTGRRYEGALDRVLEAVRKVAKMSGMTITESSGDTEPGRDPEDRPVKPPQPGDDAVADAPDIIPVPTPRPYDDDVAKLIRGVNGVTLQGTTRTLILGLRFDFIIRLREEAETTFVDIRVASRYGQHDLGFSAEIAGDYLKALDAELLGIAGG
>NZ_CP007045.1|WP_025393519.1|800548_800941_-|hypothetical-protein
MISPEMAASPQASALGGIDHQSEPMLPMELLELELSLEGYAGGDPGFCEAVRQAAARSGGELLFDLPAGGLVHDCSRIAVLRIPEDGQEMRVVLALLDGNGTEIRMQAPNEETAPLVRFADAFIEVLERI
>NZ_CP007045.1|WP_025393518.1|799958_800513_+|ankyrin-repeat-domain-containing-protein
MLGFFLRVIAVLALSFSSATATNAEVAEKFHDAVQVGDVTTVRAMLAADPSLAISVDEYRFQPIHLLDMYFEREILELLLANGADINARNDEGISILHIITDPEAVNLLIEKGADIEARDNHGRTPLIVQMLNRQNGPDVIAALLENGANPNAKDDSGVTAFDIARQSGDEDLIGLMTRSGTRN
>NZ_CP007045.1|WP_003546063.1|799697_799943_+|hypothetical-protein
MALRDRFSKKLNCPQCGNEGFAEASEVDDPKRKHPDFKVDQLPRGFGVQRPSNHQENFVIKCECGRKFPFRSVAEAAAERR
>NZ_CP007045.1|WP_025393517.1|799375_799573_-|hypothetical-protein
MPNRDPIPTPNADTPRGPTPTPGIPDRIQEKPPLTPAQDPADTKNPQDPPLNPALLPIGDPAGAA
>NZ_CP007045.1|WP_025393516.1|798791_799070_-|hypothetical-protein
MRFRLLITVLATIVAGLSACQTMTPEERRAADEQRCLSYGFRRGTDGFATCLQRIDLDRRAESRAQSAEMMNRMAWDLNGPYVYRDRWRYRY
>NZ_CP007045.1|WP_025393515.1|796045_798754_+|pyruvate,-phosphate-dikinase
MTKWVYRFGDGQAEGRARDHGILGGKGANLAEMCALGLPVPPGLTIVSDACNTYYKNGRHIEDAVKAEVRAGIAAIEAITGRRFGSVSQPLLLSVRSGARVSMPGMMDTVLNLGLNDETVQALGHDAGDARFAWDSYRRFIQMYADVVMGLGNDAFEEILEDEKAKLGHEFDTELSASEWQHIVSLYKKLIEEELEQEFPQDPEVQLWGAVGAVFSSWMSARAVTYRQLHNIPEAWGTAINIQAMVFGNLGNASATGVAFTRNPSTGERALYGEFLVNAQGEDVVAGIRTPQSITEDGRISSGSEKPSMEKLMPEAFRELCRICTDLEIHYRDMQDIEFTIERGKLWMLQTRSAKRSTRAAMKIAVDMVDEGVITEDEAVLRIEPSSLDQLLHPTIDPRVTRQVIGSGLPASPGAATGAIVFTAEEAVEAEAEGRKVILLRVETSPEDIHGMHAAEGILTTRGGMTSHAAVVARGMGIPCVVGAGTMRIDQRNERLLGVGVTLKKGDIITIDGSAGQVLKGEVPMIQPALSGDFGRIMGWADRARRMTVRTNADTPADALAARSFGAEGIGLCRTEHMFFEGERIHVMREMILAVDEKGRRLALDKLLPMQRLDFTGLFTVMHGLPVTIRLLDPPLHEFLPKTDDEVAEVAFAMGMEASVLRQRVDALHEFNPMLGHRGCRLAISYPEIVEMQARAIFEAAVAAAKETGAAVVPEIMVPLVGLRTELDYVKAHIDAVAGDVMNEAGMKIDYLVGTMIELPRAALRAHVIAEAAEFFSFGTNDLTQTTFGISRDDASAFIPTYQRKGIIEHDPFISLDFDGVGELISIAAERGRRTRNDMKLGICGEHGGDPASIRFCETIGLDYVSCSPFRVPIARLAAAQAVIAGGLEEIRRGPKDLRATV
>NZ_CP007045.1|WP_025393514.1|791718_795180_+|chromosome-segregation-protein-SMC
MKFNKLRLVGFKSFVEPTEFIIERGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASGMDDVIFSGSGNRPARNTAEVALYLDNAERTAPAAFNDSDEIQVTRRIEREQGSLYRINGKESRAKDVQLLFADASTGARSPSMVGQGRIGELIQAKPQARRQLLEEAAGISGLHSRRHEAELRLRAAEGNLERLDDVTSQLESQIESLKRQARQANRFKTLSADIRAREAMLLHIRWVQAKEAEAEADSALNQATSVVAEKAQMQMEAAKNQAIASLKLPELREGEARAAAALQRLQIARSQLEEDAGRILRRRDELTRRLAQLAEDISREQRLVADNAVILARLDAEEAEISEILADSGRYAEETREAFEEAAAKLADSERIFTQLTAERAEAAAGRNQLERAIRDLADRRMRLERQMDEANQELSAIGEKISGLPDPDEKRAIVEAGEIAVADAEAAVQVVDQALAAARQTEALSRAPVEQARSSLNALETEARTISRMLAAGAAAGKFPPVADELKVDRGFETALGAALGDDLESPLEAEAPAHWSDNGDGAGDPALPSGVAPLLAHVRAPTALTRRLRQIGLVAEGDAERLMAALKPGQRLVTKEGAVYRWDGHVTGADAPSAAALRLAQKNRLAELEGEAALARDVLAEAEERQAAAAEAIRAEERRLAEARDMSRLSARHLAEARDALVAAERASGDLIRRRDVVSEAASQLRSQLEEIAIQEENARIELEDAPDLTDIDERLRFQQAEVATDRGALAESRARHESLARENEARQRRIIAIGQERETWRQRAASAEDHVATLREREEEARDEAAELELAPDEFDDKRRALLSELQKAEEARRQASDLLAEAERIQREADQKATTALSELAECRERRGRAEERLVSAREKRQESESRIREVLNVAPHEALQLTGRPTMQSLPDPREVERELERLRIERERLGAVNLRADEEQKELSEKLEALIKERDDVIDAIRKLRGAIQSLNREGRERLIAAFDIVNAQFQRLFTHLFGGGTAELQLIESDDPLEAGLEILARPPGKKPQTMTLLSGGEQALTAMALIFAVFLTNPAPICVLDEVDAPLDDHNVERYCNLMDEMAASTETRFVIITHNPITMARMNRLFGVTMAEQGVSQLVSVDLQMAERLREIA
>NZ_CP007045.1|WP_020665237.1|790623_791400_+|DsbA-family-protein
MQMSEMQLTKRRLLSGIAIAAAAVALVACNDSKDAADASSSGKTMADGTNVDTMQTAATSATEMPESDGDVDMAEVLKPGVLPEMALGKADAPVKIVEYMSMTCPHCAHFHNTVFDTIKQKYVDSGKVQFIIREFPFDPRAAAAFMLARCNSSNPEQLSTPEQYFPMVSMLFKQQQVWAAADDGRAALLQMSKLAGFTEDSFTKCLTNQKLLDEVNATRERGSKDFGVNATPTFLINGKRYSGDMPVDTLSKLIDSLL
>NZ_CP007045.1|WP_011650811.1|789410_789908_+|DUF721-domain-containing-protein
MSYPRKGAKQISELANGLIDPVLARRAGINTALLGSWSEIAGEDFADCTRPEKIAWARGGDETGGFRPGVLTIACEGARALFLTHAQGELIQRINSFFGFAAVHQIRIVQKPVSQAIRRSRTPPPLKGEAARKLEGMMEGIENDKLRQAIQRLGTAVMGKRGNQR
>NZ_CP007045.1|WP_025393521.1|802558_802906_-|dehydrogenase
MRYLCLFYIDQTLADAASKKEWAEIDRESLASNEELQRSGHYLASNALADPKTAKTLRVRAGKVSWTDGPFAETKEHLGGFLLIEAKNLAEAMEIAERDSLARMGAIEVRETAGF
>NZ_CP007045.1|WP_025393522.1|802989_803217_-|DUF1127-domain-containing-protein
MAATKHSEHVELQSPHLSVVGTLQAVWMLLKHQRRYRRSLSELSRFDSRLLRDIGLEPPEISAGKIAEQQGTLAG
>NZ_CP007045.1|WP_025393523.1|804138_805860_-|DUF4166-domain-containing-protein
MSDERFCLLIIGGYGTFGGRLAQLLGDEPRLRLLVAGRSLEKADDFVADLRTPKDGAEGLGSNNLGALVQAVAFDRDGDLPEQLTRMRPHLVIDASGPFQSFGKDGYKVAEACIDLGIDYADIADSTGFVAGIGGLDAAAKAKGTFALSGLSSLPALSFAALDAMAPHFSRIESVSAGIAPSPHVKIGLNVVRAIATYAGKKVPVLRNGRAAPGRGLIDAMRVTVAPPGVKPLRSRKFLLVDAPDLTLLPARFAGLQSTFTGVGTEPQLLQRMLSLAARLVRLRLLPSLQPFARLLQRASHAFAIGDHRGGMFVRVGGVDHAGQRLSCGWHLIAEGDDGPFIPVIAVDALVRRLLTGIRPESGARPAAGELRLEDFEAAFRRFSITTGITMENEEARQPLYQRILGSAWERLPPAISALHAGGARVASGRARIERGGGLLARIVAGVIGFPRAGKDVPVTVRFVPDGDREVWTRDFGGTVFRSLQVEGKGRDRHLLAEVFGPFRVLMALVPDGGKLRLVVRGWRFCGIPLPLFLAPGGDTYEEELDGRFHFHVEIGGRLTGLVVRYTGWLVAE
>NZ_CP007045.1|WP_025393524.1|805856_806306_-|DUF393-domain-containing-protein
MGRAEYSYREDPDVPDFADDRPLIVFDGECVFCSGWVKFALKHDKKQRYRFLAAQTPLGAALYRHYGLHARDYETNILIENGRAFFKSDGSIRMVAGLGFPFSLVKIFRLLPRRAADALYEFIARNRLKIAGRQSCMVPTPEQRSRFIA
>NZ_CP007045.1|WP_025393525.1|806320_807238_-|MBL-fold-metallo-hydrolase
MDSPAFDLAFEPAYGQAVPVVSGVERITAENPGPFTFFGTNSYIVGSSSVAVIDPGPEDEAHFQALMAALSGRTVTHIVVSHTHRDHSPLARRLQAATGAVTVGRGPHRPARPLRDGEINPFSESSDLSFVPDIALSDGETISGDGWSLSAVLTPGHTANHAAFALEGRNILFSGDHIMAWSTSIVAPPDGSMADYMESLDRLIEREDGLLLPGHGGPVTEPATFLPALKAHRLKREQAVLARVQAGDRGIAEMVKAIYRDTDPKLHGAAALSVLAHIEDLLERGEIAADGPPSLAASYRPAQGR
>NZ_CP007045.1|WP_025393526.1|807657_808353_-|hypothetical-protein
MPDFQSEVGNLKAALVSRLESSGSELAEAAYKAALPQIEWLDYLRKSELTGVADEFLTGLRASIVESLGCLAAGLVRPAIFAMRGQIDIALGWLYFKDHPVEWDKVVRTGDGFMLKRDVMQYLEENISSFKPRFTAVSVFKTRSESDPYRLLSAYVHGQSPATLPIYEGLETLIWKSSLCEDGVKLQAEVSEYVNDVLVAYFGSKWASIPKNRIEALEVRMGAGNIVKAFT
>NZ_CP007045.1|WP_025393527.1|808354_808819_-|hypothetical-protein
MTNSVGRILLLLASSNTSREDLRTFSRWLHNEHPDELARRVQGIRSYADRDAAGPEKPVASQPQTSKLRDEVEELLVAKAGLRRVEAAALLREMMVQDGRIEPSFLPWNSGSFGQWLNKLAKASSQSDVLHFASRISRDRSSSNTSAWPLKSQN
>NZ_CP007045.1|WP_155256812.1|808819_809704_-|AAA-family-ATPase
MAEKKKFVPVVAVLNMKGGVGKTTMSAHVFRVLFEDKRAGTLLLDLDPQFNLTQTLFTREAYDKLRAEKNTISSVMEPPSDLGLFSVKTTSEPPPDPEKLAQTKFHFAGAQPPVELAIIPGDFQLAKYSLMDDNKQLGSVRDRFMKFVEKAKETYRVVVIDCNPSSSFLTLCALQACTHVLVPVRPDRYSVLGLEILSEFIDGVPTISPKPHLIIAMNGMPRTRKRETSAIEAELRAHDKFGSKTLANVLKVSSHLIAKTDYTGFATDRKGSWTKVLRSEIAALAGELSTKIGL
>NZ_CP007045.1|WP_155256813.1|809875_810892_-|hypothetical-protein
MSGSAIPYHLRPHKAVDRRLFVDLLTRLERWRPLHNYAYVSMGAYPLEDHKIVHRILGIKRLLAFDYDEEVVNRQKFNRPIARCRCIQAASKDVVDNFDHILKDNKIDDAAGVIVWLDYTDPNEIQHQIREFQDLIDKLRVGDVVRVTVNAHFSEYADPIPQGQAQPKKTERQQKTFQKLQSKIGEYLPSDASSADMTPAGLALLLSKSFGNAVHKAFQPTSANTFKPLSVTRYADGLQMLTMTGAVIKRAEEQALTSALDLKNWPFASKDWSSIHHLVVPALTLRERLFLEREVGGRPDRIVKKLGFSSTADVSIKDFLKSYKDYYRFYPTLLSADV
>NZ_CP007045.1|WP_025393531.1|810888_812316_-|ATP-binding-protein
MAAERTQIGEAKASPTKDFFVKMLTRDIDLQDALLDLLDNCVDGIVRSGAATDDKPKPYQNYRATVTLCKDHFSIEDNCGGIPYDIAVKSAFAMGRPPGTAELSSHATVGMYGIGMKRAIFKLGTEALVESRHDKAFTVEFSSKWMSSDDWTNLPMYALSEDKIPAGVTRIVVYKLNDEVAACFHDKQWVDDFRKVVAQHYSIILSKGFAVDIGSPEELGEGKGHVNPDVFQLLNSEKKEDGTAIAPYVYLGKLGDVSVEIYAGLYRELTKQELESEEGTRGSFDEAGWTVACNDRVVIWKDKTKLTGWGEATVPNYHGQFIAITGIVLLQSDQPKQLPLTTTKRGIDAASNVYLDVKDLMREATKSLTAFTNRWKKFPDQLEEIYKGTEYVDLPKLRAQATETASAAIRKYPDFKKSDPQYPVPPQEKTSSRVSFVALKKDVEHLANHFFDDAKTKPGIVGEAAFNHVLEETRK

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Crispr_ID: NZ_CP007045_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007045_2

1744211-1744296

Orphan

Consensus_repeat	Method
GCCGCACCGAAGAAGAAGGCTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007045_2

>merge|NZ_CP007045|2|1744211-1744296|CRISPRCasFinder
GCCGCACCGAAGAAGAAGGCTGCCGCCAAGGCCGAAGCAGCTGACGCCGGTGAAGGCGAAGAAGCCGCGCCGAAGAAGAAGGCTGC

>NZ_CP007045|2|2|1744211-1744296|CRISPRCasFinder
GCCGCACCGAAGAAGAAGGCTGC	CGCCAAGGCCGAAGCAGCTGACGCCGGTGAAGGCGAAGAA
GCCGCGCCGAAGAAGAAGGCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007045.1\|WP_025394346.1\|1741819_1742410_+\|GDYXXLXY-domain-containing-protein	unknown	unknown	gnl\|CDD\|379571
NZ_CP007045.1\|WP_025394354.1\|1753538_1753712_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007045.1\|WP_025394351.1\|1750834_1751659_-\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NZ_CP007045.1\|WP_025394356.1\|1753977_1754472_-\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|234639
NZ_CP007045.1\|WP_025394355.1\|1753708_1754041_+\|membrane-protein	unknown	unknown	unknown
NZ_CP007045.1\|WP_025394350.1\|1749484_1750672_-\|alpha-hydroxy-acid-oxidizing-protein	unknown	unknown	gnl\|CDD\|376451
NZ_CP007045.1\|WP_003539017.1\|1739262_1739406_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|227744
NZ_CP007045.1\|WP_025394348.1\|1745121_1746891_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|214792
NZ_CP007045.1\|WP_025394347.1\|1744612_1745035_+\|ketosteroid-isomerase	unknown	unknown	gnl\|CDD\|226158
NZ_CP007045.1\|WP_025394353.1\|1752751_1753411_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP007045.1\|WP_025394345.1\|1740719_1741823_+\|DUF2157-domain-containing-protein	unknown	unknown	gnl\|CDD\|227209
NZ_CP007045.1\|WP_003539019.1\|1739700_1739847_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|227744
NZ_CP007045.1\|WP_025394352.1\|1751666_1752503_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP007045.1\|WP_025394349.1\|1747858_1749265_-\|Si-specific-NAD(P)(+)-transhydrogenase	unknown	unknown	gnl\|CDD\|235373
NZ_CP007045.1\|WP_025394342.1\|1736248_1737106_+\|phytoene/squalene-synthase-family-protein	unknown	unknown	gnl\|CDD\|224478
NZ_CP007045.1\|WP_025394344.1\|1737735_1739169_-\|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO	unknown	unknown	gnl\|CDD\|235416
NZ_CP007045.1\|WP_025394341.1\|1733314_1735855_+\|protein-translocase-subunit-SecDF	unknown	unknown	gnl\|CDD\|237805
NZ_CP007045.1\|WP_003539009.1\|1735859_1736246_+\|membrane-protein	unknown	unknown	gnl\|CDD\|226260
NZ_CP007045.1\|WP_003539006.1\|1732921_1733269_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|224775
NZ_CP007045.1\|WP_025394343.1\|1737177_1737645_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP007045.1\|WP_025394346.1\|1741819_1742410_+\|GDYXXLXY-domain-containing-protein	gnl\|CDD\|379571	pfam14345, GDYXXLXY, GDYXXLXY protein. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 171 and 199 amino acids in length. It contains a conserved GDYXXLXY motif.	5.1446e-43
NZ_CP007045.1\|WP_025394351.1\|1750834_1751659_-\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	4.92437e-108
NZ_CP007045.1\|WP_025394356.1\|1753977_1754472_-\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	1.57961e-54
NZ_CP007045.1\|WP_025394350.1\|1749484_1750672_-\|alpha-hydroxy-acid-oxidizing-protein	gnl\|CDD\|376451	pfam01070, FMN_dh, FMN-dependent dehydrogenase.	1.48326e-157
NZ_CP007045.1\|WP_003539017.1\|1739262_1739406_-\|DUF1127-domain-containing-protein	gnl\|CDD\|227744	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown].	1.01998e-10
NZ_CP007045.1\|WP_025394348.1\|1745121_1746891_-\|radical-SAM-protein	gnl\|CDD\|214792	smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.	7.71688e-21
NZ_CP007045.1\|WP_025394347.1\|1744612_1745035_+\|ketosteroid-isomerase	gnl\|CDD\|226158	COG3631, COG3631, Ketosteroid isomerase-related protein [General function prediction only].	1.61082e-06
NZ_CP007045.1\|WP_025394353.1\|1752751_1753411_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.54004e-09
NZ_CP007045.1\|WP_025394345.1\|1740719_1741823_+\|DUF2157-domain-containing-protein	gnl\|CDD\|227209	COG4872, COG4872, Predicted membrane protein [Function unknown].	2.41715e-43
NZ_CP007045.1\|WP_003539019.1\|1739700_1739847_-\|DUF1127-domain-containing-protein	gnl\|CDD\|227744	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown].	2.31468e-08
NZ_CP007045.1\|WP_025394352.1\|1751666_1752503_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	7.14323e-163
NZ_CP007045.1\|WP_025394349.1\|1747858_1749265_-\|Si-specific-NAD(P)(+)-transhydrogenase	gnl\|CDD\|235373	PRK05249, PRK05249, Si-specific NAD(P)(+) transhydrogenase.	0
NZ_CP007045.1\|WP_025394342.1\|1736248_1737106_+\|phytoene/squalene-synthase-family-protein	gnl\|CDD\|224478	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism].	1.30301e-57
NZ_CP007045.1\|WP_025394344.1\|1737735_1739169_-\|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO	gnl\|CDD\|235416	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed.	0
NZ_CP007045.1\|WP_025394341.1\|1733314_1735855_+\|protein-translocase-subunit-SecDF	gnl\|CDD\|237805	PRK14726, PRK14726, protein translocase subunit SecDF.	0
NZ_CP007045.1\|WP_003539009.1\|1735859_1736246_+\|membrane-protein	gnl\|CDD\|226260	COG3737, COG3737, Uncharacterized conserved protein [Function unknown].	5.48545e-60
NZ_CP007045.1\|WP_003539006.1\|1732921_1733269_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|224775	COG1862, YajC, Preprotein translocase subunit YajC [Intracellular trafficking and secretion].	1.38952e-31

>NZ_CP007045.1|WP_025394346.1|1741819_1742410_+|GDYXXLXY-domain-containing-protein
MNSFIAKLQSGKGYLLSAVIVAGLQTLVLGTIIQSRASILSYGAEVLLKTAPVDPRDFLRGDYVVLNYDISSVPVQTVSGGIPAEAGERVLWVRLKKQEDGFWTVTESSFRELPPQPETVILRSQPFYSGGLAAGDSMRVEYGIERYYVPEGEGKPIEEARNGGNVAIAVRVSADGSAQIRSLLVDGKPVYDEPLY
>NZ_CP007045.1|WP_025394345.1|1740719_1741823_+|DUF2157-domain-containing-protein
MYRGRLERDLSLWVGKGLLGQETAGALLAEYDSRPASFSLGRVLMALAAVLLAAAILLVVASNWEAIPRLVRVGGILALIWFVHIAAARMLARGATAAAGGLLVIGAMSFGGAISLVGQMYHLSGDEQTVMYLWFAIATISAILFRSGAVTVVAGFLSWASFAVYLQNNDTHWIGFNPWMAPAMAVIVIGLVRYTGAERARHLAYLLLIGWLAWLYTLYEEIAVALAFAIGGMAAFVLTALPLRPIASLVRSAGAAPAFYSFLVAVIGFLLLHIEIEDGWWLVVLGVVTLAASVLAIVLRGRDNGAVRYLAYATFAAEMLYLASVTVGSILGTSSLFLFSGLVVALVAWMVIRLERRFSANAQGERA
>NZ_CP007045.1|WP_003539019.1|1739700_1739847_-|DUF1127-domain-containing-protein
MNFSRSFNNWRKYRQTVTELGRMTNRELHDLGIDRSDIHRVAREASHR
>NZ_CP007045.1|WP_003539017.1|1739262_1739406_-|DUF1127-domain-containing-protein
MNPIRIARSWLSYRRTLNELGGLSNQTLSDIGVSRYDIRNIASRSFR
>NZ_CP007045.1|WP_025394344.1|1737735_1739169_-|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO
MNTISSYSPIHVVGGGLAGSEAAWQIASSGVPVILHEMRGVRGTDAHKTDGLAELVCSNSFRSDDATSNAVGVIHAEMRMAGSLIMAAADRCQVPAGGALAVDRDGFSEAVTKAVHDHPLITVVREEVTGLPPKDWDLAIVATGPLTAPSLASAIQTETGEDSLAFFDAIAPIVYRESIDMDICWYQSRYDKVGPGGTGKDYINCPMDEAQYNAFVDALISGDTVGFKEWEGTPYFDGCLPIEVMAERGRETLRHGPMKPMGLTNAHNPTVKAYAVVQLRQDNALGTLYNMVGFQTKLKYGAQADIFRMIPGLENAEFARLGGLHRNTYINSPTLLDPSLTLKSRPGLRFAGQITGCEGYVESASVGLMAGRFAAAERKGEAISLPPATTALGSLLGHITGGHLVTDEEPGKRSFQPMNINFGLFPELQPGSILKPEGVKRFRGKDKTIMKRQLIARRALADCATWLGQESTLAESA
>NZ_CP007045.1|WP_025394343.1|1737177_1737645_+|hypothetical-protein
MGIIVWCVLFAIVVFFAFVATRMAVQNKEDGLHDTGLAIIEFGRAFPNEAIRQLQATENGQAVFVRLHDNKAGFMRNMSRHFSCHLIEPGRVRVVGSETGRGLVIDFLDAPHHNGDFEFASAKEASEVSLWLLGNYIAEPDKDLPPGNISAANKQ
>NZ_CP007045.1|WP_025394342.1|1736248_1737106_+|phytoene/squalene-synthase-family-protein
MTEAHIATNQEICLAMLRDSDRDRYLACLLSPEEKRGALAALYAFNAELARIRDLVHEPLPGEVRLQYWHDLLEGSAHGSTAANPVAAALLIAIETHRLPRKTLIDMIEARTFDLYDDPMETRLSLEGYAGETASALIQLASLVLSPEEAARSADAAGHAGVAQAVAGLLLLMPLHRRRGQIYIPLQILTATGLDRDAFLAGEDRPRISAAIEAFAGLGREHLAKARAAGPIAPAVFPAFLPATLAEPVLVKAQKRGALLLDRPLQPSQWRRQLRMGLAAARRKI
>NZ_CP007045.1|WP_003539009.1|1735859_1736246_+|membrane-protein
MAKGIEIRAAHFPGRAPIDAYGNGGFRFADMSHRGSILCLPSGIHGWDMDMSKPLSPENFRRVLDEAADIEVLLVGTGTELRRLPEELRLALKSRGISSDPMSTGAAVRTFNIMLAEQRAVAAALIAV
>NZ_CP007045.1|WP_025394341.1|1733314_1735855_+|protein-translocase-subunit-SecDF
MLHFSRWKTLLIWLAAFAAIVIAAPNLLTEAQRSSLPDWLRHDRVVLGLDLQGGSHIVLKVERSDIVRDRLEEVVANVRNALRGASIRYTGLTGNDQTVTVRITDAAQTQAAVDLLKPLTTAGGHSGPEVALQQGKEGQLSLQISDAGITADVASARTRSLDIVGRRIAGLGNDNFLVRPDGTDRIIVQVLGSIDVERLKNILNQPAKLSFHLIDESISGQEALNGRWPATSQVLYSLDDPPVPYLVDRTAFITGSNMVDIEPVVDPQTQDTSIAYRLDAEGKERLAQATGQNIGKHLAIVFDDQVMSSPVIDAAITGGEGKISANFSEDGVRDLAIMLRAGALPATLTSVEERSVSPRFGADSIFNGLVAGLVAVILVAALMIALYRILGLIAVASLFLNLILIVAVLSLAGATLTLPGIAGIVLIVGMAVDSNVLIYERIREEEKTAHSFAEAAGRGFSRAFATIVDANVTIFIAAIILFFLGSESIRGFAVTLAVGILTTVFTAFTLTRSIVAVWVRRRHPRHLSKSVLTHLFEHANIRFMGIRRYVFTASAVISLIAMAAFATVGLHLGVDFTGGSLIEVTAKQGNADIADLNARLNDLNLGEISVERTGGPANARIRIASQGGGENAEQSAATLVRGELQEDYDFRRVEVVGPAISGELTMMATLGVLAALAAILIYIWIRFEWQFAVGAIVATLHDVIIMLGLFVLTGIEFNLTSVAAVLTIVGYSLNDTVVVYDRMRENLKRYKKMPLPILIDASINQTLSRTVLTAATTLIALLALFLFGGEVIRTFTFAMLFGVALGTFSSIYIAAPVLIVFRLRPEAPDGEESNKTDVGVKSGTVV
>NZ_CP007045.1|WP_003539006.1|1732921_1733269_+|preprotein-translocase-subunit-YajC
MFITPAFAQSATDTATGFGGSGFEMIILFVPLMVVWYFLLIRPQRAQAKKREETLKAIRRGDQVVTGGGLVGKVTKVIDEKEVEVEIADGVRVRIVRSGISEIRVKGEPVKADAA
>NZ_CP007045.1|WP_025394347.1|1744612_1745035_+|ketosteroid-isomerase
MTAKHDMKKLVEEIYAVRDRGNVEATLALIGENCTFRMVGNTRLAPFSTESSGHAFRQAITQLITVWDLSNIRTAGIYVDEDEQMIFAHREGEVRHIPSGVSFHTEFVDKIHFRDGKPVKIVEFVDTLQVAETTKMIQVA
>NZ_CP007045.1|WP_025394348.1|1745121_1746891_-|radical-SAM-protein
MSHVLEAARRRFQLILIKPSHYDDDGYVIRWWRAMIPSNSLAALYGIAAECAERKVLGDDTAIDITVIDETNTRIDIAGLLAQFKRHDNFGMIALVGVQTNQYPRALDIARPFRDAGLPVSIGGFHVSGCLSMLDGKAVGLDACRDMGISMFAGEAEGRLDMVLRDAAAGELKPLYNFMNDLPGIGGTPVPFLPKDNIQRTLGLSTSFDAGRGCPYQCSFCTIINVQGRKSRFRSADDVEKLVRMNWAQGIHKFFITDDNFARNKDWEAIFDRLIELKERDGIPLGLMIQVDTLCHKIPNFIEKSRRAGVTRVFIGLENVNPDNLTAAKKNQNKITEYRKMLLAWKAQGIMTLAGYILGFPADTPESIRRDIAIIQEELPLDVIEFFILTPLPGSEDHQVLWKKGVEMDADLNIYDVEHVCTAHPKMSKQEWEDIYHEAWALYYSPEHMKTLLRRAVATGVPLARLVKVLVSFATTVPLENVHPLQSGLLRLKTPSERRPDLPRENPLVFWPRSAWETFRKHASLAGTIIGLTISAFLISRDAKSKTYMDQALTPVADDEEETLHLFTQTAGGAAAVSHVRKVAQLTAH
>NZ_CP007045.1|WP_025394349.1|1747858_1749265_-|Si-specific-NAD(P)(+)-transhydrogenase
MLQYDLVVVGSGPAGRRGAIQASKLGKKVLVIEQGKRVGGVSVHTGTIPSKTLRETALNLSGWRERGFYGRSYRVKEEISADDLRRRLLITLNHEVEVLEHQFARNRVQHIRGKASFIDASTLQVIKDDGETTQVTAASVLLAVGTKPFRPDYMPFDGKTVLDSDELLDIQDLPRSMVVIGAGVIGIEYATIFSALDTAVTVIDPKATMLDFIDKEIIEDFTYQLRDRNMKLLLGQKADKVERLENGKVELTLDSGRRLTTDMVLFAAGRMGATDALNLQAIGLEADSRGRLKVNPETFQTSVANVYAAGDVVGFPSLASTSMEQGRIAARVAVGAVAKEPPKYFPYGIYAVPEISTCGLTEEEMKERGIPYECGIARFRETSRGHIMGLDTGLLKLIFSLKTRRLLGVHIVGEGATELVHIGQAVLNLKGTVEYFVENTFNYPTLAEAYKIAGLDAWNRMGDIKSEL
>NZ_CP007045.1|WP_025394350.1|1749484_1750672_-|alpha-hydroxy-acid-oxidizing-protein
MTIRSGNTDRSTRLCRGVLCLDDFEIKARRHLPKPLFGYIAGATETNASLRQNAEAFQAYAFRPRVLRDVSKRSTETSLFGKTHAAPFGIAPMGISALMAYRGDIVLAQGADQSGIPMIISGSSLIPLEEIAAVSPQAWFQAYLPGEPDRIDALIDRVGAAGLRTLLLTVDTATLPNRENNVRAGFSTPLRPGLRLAWQGISHPRWTTGTFLRTIVRHGIPHFENSYATRGAPIISSNVMRDFGRRDHLNWNHLERIRNRWSGKLVVKGIMHPDDAARAVDTGADGVIVSNHGGRQLDGTVSPLQVLPQIASRVGDSVAVMVDGGFRRGTDIMKALALGACFVFVGRPFLYAAAVAGLPGVLKAADILKTELHSNMALLGVTKVGDISADYITRA
>NZ_CP007045.1|WP_025394351.1|1750834_1751659_-|DNA-repair-protein-RadC
MAKGPVSTSSDDELPFPTEPIAADERSFFGGRPQKPSAPNARTALPASLAIQEHYHGHRERLRDRFRELGDTALADYEILELLLFRLIPRRDTKPIAKALIERFGSLSGVFGAPQALLMEIKGVGEAVALDLKLISTVAHRTLKSELRSKQVLSSWSSVIQYCHAAMAHETREQFRILFLDKRNVLIADEVQGRGTVDHTPVYPREVVKRALELSATAMILVHNHPSGDPTPSRADIDMTKVIIDAAKALDITVHDHVIIGRDGHVSLKGLKLI
>NZ_CP007045.1|WP_025394352.1|1751666_1752503_-|type-I-methionyl-aminopeptidase
MVNYIEASTAPPKNTGAIRLYDAEAFEGMRKACQLTARCLDALADIVKPGLLTDEIDRFVFDFGMDHGAYPATLNYRGYTKSTCTSINHVVCHGIPNDKPLRDGDIVNIDVTFVLDGWHGDSSRMYPVGVVKRAAERLLEVTYESLMRGIAAVRPGARTGAIGEAIQTYAEAERCSVVRDFCGHGVGRLFHDSPNILHYGRANEGPELREGMIFTIEPMINLGRPHVKVLADGWTAVTRDRSLSAQYEHTVGVTSDGCEIFTLSPGGLDRPGLPSHNG
>NZ_CP007045.1|WP_025394353.1|1752751_1753411_+|TetR/AcrR-family-transcriptional-regulator
MLNEAINLENSPGTDEGPERRVRDRGATERAILAAAKGLLAEEGFQNFGINAVARRAGCDKQLIYRYYGGLDGLVEAIGTDLGTWVKDRIPEDAGGMFLLTYGDLMERLSLLLLDALRNDPLMRRILAWEISENTEQVRRLSEARSKALALWLERMRGSLAPPKGVDAAAVNAVVIAAIQHLVLAAAAGGQCAGLSLKTPKDWEKAATALKRIVRGVYG
>NZ_CP007045.1|WP_025394354.1|1753538_1753712_+|hypothetical-protein
MGAKIAKAVFLVAAMMFFAVLALDIAIPTLVLCIMALSTWLVSLDLPVARKHGGEAA
>NZ_CP007045.1|WP_025394355.1|1753708_1754041_+|membrane-protein
MKWFLIFWAGPIVFLGGWYWLSYYDMSFGIFMLSRQVHDLTFELYGKALGVPPETIPPLVARAIAMDSLVVFAILAFRKRKSIIAWWKARQALNSSPSDLASKDSLSSAP
>NZ_CP007045.1|WP_025394356.1|1753977_1754472_-|Holliday-junction-resolvase-RuvX
MTVLTIEEIAETLVPRQAIAGLDLGTKTIGLSMSDLGRRFATPRTVIRRVKFTIDAQALLDFAQSEKVAGFIIGLPMNMDGSAGPRVQATRAFVRNMEQKTALPFVYWDERLSTVAAERTLLEMDVSRAKRAERIDSAAASFILQGALDRLSLLARSDGDEFSA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP007045_1	1.1\|802352\|33\|NZ_CP007045\|CRISPRCasFinder	802352-802384	33	NZ_LR134452	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 10, complete sequence	56374-56406	8	0.758
NZ_CP007045_1	1.1\|802352\|33\|NZ_CP007045\|CRISPRCasFinder	802352-802384	33	NZ_CP023549	Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence	620382-620414	11	0.667

1. spacer 1.1|802352|33|NZ_CP007045|CRISPRCasFinder matches to NZ_LR134452 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 10, complete sequence) position: , mismatch: 8, identity: 0.758

tgggtgagccgcggtgccgccgaaggcggcagt	CRISPR spacer
cacgagcggcgcggtaccgccgaaggcggcggt	Protospacer
.. * * * ******.**************.**

2. spacer 1.1|802352|33|NZ_CP007045|CRISPRCasFinder matches to NZ_CP023549 (Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.667

tgggtgagccgcggtgccgccgaaggcggcagt	CRISPR spacer
ctccgcccccgctgtgccgccgaaagcggcagc	Protospacer
.       **** ***********.*******.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1336405 : 1345562

Enterobacteria_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025394022.1\|1336405_1337704_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	9.8e-99	51.5
WP_003547190.1\|1337713_1338190_+	transcriptional repressor NrdR	NA	NA	NA	NA
WP_025394023.1\|1338193_1339531_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	4.3e-33	39.4
WP_025394024.1\|1339530_1340142_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	3.4e-17	34.9
WP_025394025.1\|1340159_1341029_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.6e-95	58.7
WP_025394026.1\|1341039_1341927_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_025394027.1\|1341929_1342985_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	9.8e-97	52.4
WP_025394028.1\|1342991_1343570_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A218MN57	uncultured_virus	2.1e-32	44.9
WP_025394029.1\|1343594_1345562_-	hypothetical protein	F2Y0P4	Organic_Lake_phycodnavirus	3.3e-05	36.4

DBSCAN-SWA_2

1411570 : 1422328

Bacillus_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025394084.1\|1411570_1412986_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.0e-12	34.1
WP_017959926.1\|1413260_1413896_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	9.5e-63	59.2
WP_025394085.1\|1414192_1415470_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	7.9e-133	58.6
WP_025394086.1\|1415874_1418292_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.2e-203	49.2
WP_003547346.1\|1418498_1418774_+	HU family DNA-binding protein	A0A172Q061	Acinetobacter_phage	7.1e-07	34.1
WP_025394087.1\|1420117_1422328_+	esterase-like activity of phytase family protein	E3SJA5	Synechococcus_phage	1.1e-78	40.8

DBSCAN-SWA_3

1619175 : 1692513

Rhizobium_phage(33.33%)

protease,capsid,portal,tRNA,head,integrase,terminase,tail

attL 1637062:1637077|attR 1662694:1662709

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025394223.1\|1619175_1619913_-\|tRNA	alanyl-tRNA editing protein	NA	NA	NA	NA
WP_025394224.1\|1619919_1620957_-	cysteine synthase A	NA	NA	NA	NA
WP_025394225.1\|1621183_1621843_+	cupin domain-containing protein	NA	NA	NA	NA
WP_025394226.1\|1621941_1622775_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_025394227.1\|1622775_1624035_-	class I SAM-dependent methyltransferase	A0A2I2L5L3	Orpheovirus	2.2e-42	34.2
WP_025394228.1\|1624597_1624924_-	hypothetical protein	NA	NA	NA	NA
WP_025394229.1\|1625134_1625452_+	hypothetical protein	NA	NA	NA	NA
WP_025394230.1\|1625504_1625990_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_025394231.1\|1626126_1626546_+	DUF2000 domain-containing protein	NA	NA	NA	NA
WP_025394232.1\|1626665_1627343_+	HAD family hydrolase	NA	NA	NA	NA
WP_025394233.1\|1627380_1630038_-	nitrate reductase	NA	NA	NA	NA
WP_018073330.1\|1630038_1630374_-	nitrite reductase small subunit NirD	NA	NA	NA	NA
WP_025394234.1\|1630378_1632829_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_025394235.1\|1632847_1634116_-	NarK/NasA family nitrate transporter	NA	NA	NA	NA
WP_025394236.1\|1634597_1635878_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_018241751.1\|1635912_1636500_-	ANTAR domain-containing response regulator	NA	NA	NA	NA
WP_025394237.1\|1636832_1638665_+	TRAP transporter large permease subunit	NA	NA	NA	NA
1637062:1637077	attL	NA	NA	NA	NA
WP_025394238.1\|1638677_1639676_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_080685794.1\|1639759_1639939_+	hypothetical protein	NA	NA	NA	NA
WP_025394239.1\|1639962_1640622_+	peroxiredoxin	NA	NA	NA	NA
WP_038614065.1\|1640819_1641776_+	lytic transglycosylase domain-containing protein	A0A0A0P1R1	Enterobacteria_phage	6.5e-07	35.6
WP_025394240.1\|1641867_1642824_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_025394241.1\|1642908_1644174_-	glycerate kinase	NA	NA	NA	NA
WP_025394242.1\|1644310_1645708_-	dipeptidase	NA	NA	NA	NA
WP_025394243.1\|1645725_1646784_-	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	5.7e-20	52.7
WP_025394244.1\|1646791_1647583_-	ABC transporter permease	NA	NA	NA	NA
WP_025394245.1\|1647579_1648404_-	ABC transporter permease	NA	NA	NA	NA
WP_025394246.1\|1648536_1649577_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_025394247.1\|1651776_1652076_+	hypothetical protein	NA	NA	NA	NA
WP_025394248.1\|1652118_1653210_-	PHB depolymerase family esterase	NA	NA	NA	NA
WP_025394249.1\|1653552_1653960_+	low affinity iron permease family protein	Q19XG2	Mycobacterium_phage	3.3e-08	40.5
WP_025394250.1\|1654060_1654414_-	low affinity iron permease family protein	NA	NA	NA	NA
WP_025394251.1\|1654561_1656679_-	catalase	A0A2K9L572	Tupanvirus	7.6e-141	49.5
WP_025394252.1\|1656874_1657774_-	hypothetical protein	NA	NA	NA	NA
WP_025394253.1\|1658056_1658326_-	hypothetical protein	NA	NA	NA	NA
WP_025394254.1\|1658322_1658559_-	hypothetical protein	NA	NA	NA	NA
WP_025394255.1\|1659255_1659459_-	hypothetical protein	NA	NA	NA	NA
WP_025394256.1\|1659707_1659962_-	hypothetical protein	NA	NA	NA	NA
WP_025394257.1\|1660311_1661496_+\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	6.1e-79	44.1
WP_025394258.1\|1661725_1661938_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_025394259.1\|1662029_1662767_+	hypothetical protein	NA	NA	NA	NA
1662694:1662709	attR	NA	NA	NA	NA
WP_025394260.1\|1662763_1664107_+	AAA family ATPase	Q9JMN6	Wolbachia_phage	2.7e-75	41.0
WP_025394261.1\|1664363_1664765_+	hypothetical protein	NA	NA	NA	NA
WP_025394262.1\|1664764_1665928_+	hypothetical protein	NA	NA	NA	NA
WP_025394263.1\|1666070_1666760_-	hypothetical protein	NA	NA	NA	NA
WP_167334094.1\|1666892_1667054_-	hypothetical protein	NA	NA	NA	NA
WP_025394264.1\|1667164_1667347_-	DUF3606 domain-containing protein	NA	NA	NA	NA
WP_038614072.1\|1667378_1667693_+	hypothetical protein	NA	NA	NA	NA
WP_025394265.1\|1667806_1668193_+	hypothetical protein	A0A0U2C0X7	Paracoccus_phage	6.7e-11	38.4
WP_025394266.1\|1668227_1670057_+\|terminase	terminase	A0A0U2C138	Paracoccus_phage	8.6e-157	49.0
WP_025394267.1\|1670056_1671310_+\|portal	phage portal protein	B4UTP1	Rhizobium_phage	2.9e-172	77.3
WP_025394268.1\|1671306_1671921_+\|head,protease	HK97 family phage prohead protease	B4UTP2	Rhizobium_phage	1.6e-43	57.9
WP_038614075.1\|1672018_1673272_+\|capsid	phage major capsid protein	B4UTP3	Rhizobium_phage	2.7e-138	62.1
WP_025394271.1\|1673322_1673535_+	hypothetical protein	NA	NA	NA	NA
WP_025394272.1\|1673497_1674037_+\|head,tail	phage head-tail connector protein	B4UTP7	Rhizobium_phage	6.8e-54	58.9
WP_025394273.1\|1674054_1674465_+	hypothetical protein	B4UTP8	Rhizobium_phage	9.2e-27	51.8
WP_025394274.1\|1674628_1674985_+\|head,tail	head-tail adaptor protein	B4UTP9	Rhizobium_phage	3.6e-11	35.3
WP_025394275.1\|1674984_1675476_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_025394276.1\|1675479_1675890_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_025394277.1\|1675929_1676364_+\|tail	phage tail protein	NA	NA	NA	NA
WP_025394278.1\|1676387_1676738_+	hypothetical protein	NA	NA	NA	NA
WP_025394279.1\|1676758_1676947_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_080685797.1\|1676943_1677420_-	YbjQ family protein	M4STD1	Rhodobacter_phage	1.8e-21	39.4
WP_025394281.1\|1677477_1680648_+\|tail	phage tail length tape measure family protein	A0A076G7H2	Sinorhizobium_phage	5.2e-61	33.0
WP_025394282.1\|1680644_1680995_+	hypothetical protein	NA	NA	NA	NA
WP_025394283.1\|1680991_1681495_+	DUF1833 family protein	A0A1B0T6D7	Thiobacimonas_phage	4.5e-15	33.9
WP_025394284.1\|1681494_1681965_+	C40 family peptidase	G8GWF9	Rhodobacter_phage	1.9e-15	35.3
WP_025394285.1\|1681879_1685521_+	hypothetical protein	G8GWG0	Rhodobacter_phage	7.5e-96	30.4
WP_025394286.1\|1685517_1686660_+	hypothetical protein	L7TMF7	Rhizobium_phage	1.9e-74	54.4
WP_025394287.1\|1686659_1687016_+	hypothetical protein	A0A0F6WBI7	Sinorhizobium_phage	1.3e-13	53.2
WP_038614080.1\|1687012_1687525_+	hypothetical protein	NA	NA	NA	NA
WP_025394289.1\|1687553_1687808_+	hypothetical protein	NA	NA	NA	NA
WP_038614812.1\|1687839_1688277_+	lysozyme	A0A0K1Y6F2	Rhodobacter_phage	2.6e-27	43.7
WP_025394291.1\|1688273_1688645_+	hypothetical protein	NA	NA	NA	NA
WP_025394293.1\|1688888_1689227_+	hypothetical protein	B4UTS1	Rhizobium_phage	2.6e-43	78.9
WP_025394294.1\|1689261_1689525_+	hypothetical protein	A0A1J0GUZ4	Halomonas_phage	9.8e-06	40.9
WP_155256821.1\|1689730_1690771_+	hypothetical protein	A0A068CDE5	Rhizobium_phage	4.5e-155	75.7
WP_025394296.1\|1691274_1692036_-	Ig-like domain-containing protein	NA	NA	NA	NA
WP_025394297.1\|1692138_1692513_-	thermonuclease family protein	G8DH70	Emiliania_huxleyi_virus	5.1e-24	49.2

DBSCAN-SWA_4

1722558 : 1735855

uncultured_Mediterranean_phage(90.91%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025394331.1\|1722558_1723572_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	2.8e-24	42.6
WP_025394332.1\|1723590_1724448_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	9.6e-34	38.1
WP_025394333.1\|1724444_1725161_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.7e-39	47.8
WP_003538990.1\|1725344_1725536_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	8.9e-09	72.1
WP_025394334.1\|1725587_1726199_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_025394335.1\|1726195_1727023_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	8.0e-54	46.5
WP_025394336.1\|1727123_1728407_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	9.1e-97	45.1
WP_025394337.1\|1728411_1729185_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.2e-23	29.5
WP_025394338.1\|1729181_1729835_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	8.4e-14	32.9
WP_025394339.1\|1729973_1731575_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV24	Clostridium_phage	8.6e-12	29.2
WP_025394340.1\|1731739_1732612_-	ATP-binding protein	NA	NA	NA	NA
WP_003539006.1\|1732921_1733269_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	1.4e-12	39.1
WP_025394341.1\|1733314_1735855_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-56	49.0

DBSCAN-SWA_5

3952304 : 3962360

Mycobacterium_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025396141.1\|3952304_3953015_+	7-cyano-7-deazaguanine synthase QueC	A0A2P1JXV3	Rhodococcus_phage	3.0e-49	48.7
WP_025396142.1\|3953014_3953371_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_025396143.1\|3953367_3954096_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	2.0e-40	38.0
WP_025396144.1\|3954112_3955345_-	adenylate/guanylate cyclase domain-containing protein	M1HLN3	Pelagibacter_phage	2.4e-14	29.4
WP_025396145.1\|3955449_3956424_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	8.1e-138	74.1
WP_025396146.1\|3956597_3958802_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	5.0e-212	52.4
WP_025396147.1\|3958780_3959185_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	1.5e-16	44.0
WP_017968025.1\|3959194_3959416_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	3.6e-17	53.4
WP_025396148.1\|3960140_3962360_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	2.5e-126	37.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP007045

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection