CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007044	Chania multitudinisentens RB-25 chromosome, complete genome	4 crisprs	cas7f,cas5f,cas8f,cas3f,cas1,csa3,DEDDh,cas3,WYL,RT,DinG	0	39	12	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007044_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007044_1

73619-74607

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTATACGGCAGTGAAC	PILER-CR
TTTCTAAGCTGCCTATGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTATACGGCAGTGAAC	CRT

16 spacers

The CRISPR arrays of NZ_CP007044_1

>merge|NZ_CP007044|1|73619-74607|PILER-CR,CRISPRCasFinder,CRT
TTTCTAAGCTGCCTGTACGGCAGTGAACAATCGGATGATCCACCACTGGGTTGGTGTATATTTCTAAGCTACCTGTACGGCAGTGGACTCATCTTTACTCGCTTTTTCATCTCTTTCTTTTTTCTAAGCGGCCTGTACGGCAGTGAACGTCCATCGCCCTGTCAACAGGGAACCGCGTAGCTTTCTAAGCTGCCTATACGGCAGTGAACACCGAGTGGTTTTAAGTGCTGCACATCTTTATTTTCTAAGCTGCCTGTACGACAGTGAACCGGAATGCTCTGAATTAGTCGGGGCCCCACTTTTTCTAAGCTGCCTGTACGGCAGTGAACATCACCGGAATCGCAAAAAACGCGATTATCTCTTTCTAAGCTGCCTATGCGGCAGTGAACGTCAAGCTGGCTCGGCTGCGTTGTAGCATCCGTTTCTAAGCTGCCTATGCGGCAGTGAACAGATGGACGCCACCGCGTTGCGCAGCTCCCTGTTTCTAAGCTGCCTATACGGCAGTGAACAACCAGAAGGAGGGCAGAATTTACGTCCATCATTTCTAAGCTGCCTATACGGCAGTGAACTCGTTATCAGCCATTATCTTCCTCGGGAAACTTTTCTAAGCTGCCTATACGGCAGTGAACTGAACAATGAAGTTCAGCCGGTTCATATCGTTTTTCTAAGCTGCCTATACGGCAGTGAACAGAATTAGCGATATTAAACAAGATGATAGTGATTTCTAAGCTGCCTATACGGCAGTGAACATTTATGCGTTTCTGTGAGGGGTGCCTGCTTATTTCTAAGCTGCCTATACGGCAGTGAACATGAATGGCCCGTATTTTTGCGTTAATGCGGTTTTCTAAGCTGCCTATACGGCAGTGAACAGGTTCTGTTGGCTGCTGCATGGCTTGATTTTTTTCTAAGCTGCCTATACGGCAGTGAACTAATCATTGACCATTTCAATAAACGGTTGGCTTTTCTAAGCTGCCTATACGGCAGTGAAC

>NZ_CP007044|1|1|73619-74607|PILER-CR
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AATCGGATGATCCACCACTGGGTTGGTGTATA
TTTCTAAGCTACCTGTACGGCAGTGGAC	TCATCTTTACTCGCTTTTTCATCTCTTTCTTTTTT
CTAAGCGGCCTGTACGGCAGTGAACGTC	CATCGCCCTGTCAACAGGGAACCGCGTAGCTTT
CTAAGCTGCCTATACGGCAGTGAACACC	GAGTGGTTTTAAGTGCTGCACATCTTTATTTT
CTAAGCTGCCTGTACGACAGTGAACCGG	AATGCTCTGAATTAGTCGGGGCCCCACTTTTT
CTAAGCTGCCTGTACGGCAGTGAACATC	ACCGGAATCGCAAAAAACGCGATTATCTCTTT
CTAAGCTGCCTATGCGGCAGTGAACGTC	AAGCTGGCTCGGCTGCGTTGTAGCATCCGTTT
CTAAGCTGCCTATGCGGCAGTGAACAGA	TGGACGCCACCGCGTTGCGCAGCTCCCTGTTT
CTAAGCTGCCTATACGGCAGTGAACAAC	CAGAAGGAGGGCAGAATTTACGTCCATCATTT
CTAAGCTGCCTATACGGCAGTGAACTCG	TTATCAGCCATTATCTTCCTCGGGAAACTTTT
CTAAGCTGCCTATACGGCAGTGAACTGA	ACAATGAAGTTCAGCCGGTTCATATCGTTTTT
CTAAGCTGCCTATACGGCAGTGAACAGA	ATTAGCGATATTAAACAAGATGATAGTGATTT
CTAAGCTGCCTATACGGCAGTGAACATT	TATGCGTTTCTGTGAGGGGTGCCTGCTTATTT
CTAAGCTGCCTATACGGCAGTGAACATG	AATGGCCCGTATTTTTGCGTTAATGCGGTTTT
CTAAGCTGCCTATACGGCAGTGAACAGG	TTCTGTTGGCTGCTGCATGGCTTGATTTTTTT
CTAAGCTGCCTATACGGCAGTGAACTAA	TCATTGACCATTTCAATAAACGGTTGGCTTTT
CTAAGCTGCCTATACGGCAGTGAAC

>NZ_CP007044|1|1|73619-74607|CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AATCGGATGATCCACCACTGGGTTGGTGTATA
TTTCTAAGCTACCTGTACGGCAGTGGAC	TCATCTTTACTCGCTTTTTCATCTCTTTCTTT
TTTCTAAGCGGCCTGTACGGCAGTGAAC	GTCCATCGCCCTGTCAACAGGGAACCGCGTAGC
TTTCTAAGCTGCCTATACGGCAGTGAAC	ACCGAGTGGTTTTAAGTGCTGCACATCTTTAT
TTTCTAAGCTGCCTGTACGACAGTGAAC	CGGAATGCTCTGAATTAGTCGGGGCCCCACTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATCACCGGAATCGCAAAAAACGCGATTATCTC
TTTCTAAGCTGCCTATGCGGCAGTGAAC	GTCAAGCTGGCTCGGCTGCGTTGTAGCATCCG
TTTCTAAGCTGCCTATGCGGCAGTGAAC	AGATGGACGCCACCGCGTTGCGCAGCTCCCTG
TTTCTAAGCTGCCTATACGGCAGTGAAC	AACCAGAAGGAGGGCAGAATTTACGTCCATCA
TTTCTAAGCTGCCTATACGGCAGTGAAC	TCGTTATCAGCCATTATCTTCCTCGGGAAACT
TTTCTAAGCTGCCTATACGGCAGTGAAC	TGAACAATGAAGTTCAGCCGGTTCATATCGTT
TTTCTAAGCTGCCTATACGGCAGTGAAC	AGAATTAGCGATATTAAACAAGATGATAGTGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATTTATGCGTTTCTGTGAGGGGTGCCTGCTTA
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATGAATGGCCCGTATTTTTGCGTTAATGCGGT
TTTCTAAGCTGCCTATACGGCAGTGAAC	AGGTTCTGTTGGCTGCTGCATGGCTTGATTTT
TTTCTAAGCTGCCTATACGGCAGTGAAC	TAATCATTGACCATTTCAATAAACGGTTGGCT
TTTCTAAGCTGCCTATACGGCAGTGAAC

>NZ_CP007044|1|1|73619-74607|CRT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AATCGGATGATCCACCACTGGGTTGGTGTATA
TTTCTAAGCTACCTGTACGGCAGTGGAC	TCATCTTTACTCGCTTTTTCATCTCTTTCTTT
TTTCTAAGCGGCCTGTACGGCAGTGAAC	GTCCATCGCCCTGTCAACAGGGAACCGCGTAGC
TTTCTAAGCTGCCTATACGGCAGTGAAC	ACCGAGTGGTTTTAAGTGCTGCACATCTTTAT
TTTCTAAGCTGCCTGTACGACAGTGAAC	CGGAATGCTCTGAATTAGTCGGGGCCCCACTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATCACCGGAATCGCAAAAAACGCGATTATCTC
TTTCTAAGCTGCCTATGCGGCAGTGAAC	GTCAAGCTGGCTCGGCTGCGTTGTAGCATCCG
TTTCTAAGCTGCCTATGCGGCAGTGAAC	AGATGGACGCCACCGCGTTGCGCAGCTCCCTG
TTTCTAAGCTGCCTATACGGCAGTGAAC	AACCAGAAGGAGGGCAGAATTTACGTCCATCA
TTTCTAAGCTGCCTATACGGCAGTGAAC	TCGTTATCAGCCATTATCTTCCTCGGGAAACT
TTTCTAAGCTGCCTATACGGCAGTGAAC	TGAACAATGAAGTTCAGCCGGTTCATATCGTT
TTTCTAAGCTGCCTATACGGCAGTGAAC	AGAATTAGCGATATTAAACAAGATGATAGTGA
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATTTATGCGTTTCTGTGAGGGGTGCCTGCTTA
TTTCTAAGCTGCCTATACGGCAGTGAAC	ATGAATGGCCCGTATTTTTGCGTTAATGCGGT
TTTCTAAGCTGCCTATACGGCAGTGAAC	AGGTTCTGTTGGCTGCTGCATGGCTTGATTTT
TTTCTAAGCTGCCTATACGGCAGTGAAC	TAATCATTGACCATTTCAATAAACGGTTGGCT
TTTCTAAGCTGCCTATACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007044.2\|WP_024913668.1\|61660_62560_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379628
NZ_CP007044.2\|WP_071882773.1\|74799_86100_-\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|237054
NZ_CP007044.2\|WP_024913660.1\|88098_88392_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
NZ_CP007044.2\|WP_024913672.1\|58474_58840_-\|DUF2620-domain-containing-protein	unknown	unknown	gnl\|CDD\|378513
NZ_CP007044.2\|WP_024913664.1\|68468_69569_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|336785
NZ_CP007044.2\|WP_024913652.1\|97450_98032_+\|phosphonate-C-P-lyase-system-protein-PhnH	unknown	unknown	gnl\|CDD\|236655
NZ_CP007044.2\|WP_024913658.1\|89040_89949_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP007044.2\|WP_024913670.1\|60081_61236_-\|YhfX-family-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|143486
NZ_CP007044.2\|WP_037407090.1\|96274_97003_+\|phosphonate-metabolism-transcriptional-regulator-PhnF	unknown	unknown	gnl\|CDD\|182227
NZ_CP007044.2\|WP_024913666.1\|64774_65926_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|283431
NZ_CP007044.2\|WP_024913671.1\|58871_60089_-\|phosphopentomutase	unknown	unknown	gnl\|CDD\|237085
NZ_CP007044.2\|WP_024913656.1\|92833_93298_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl\|CDD\|236853
NZ_CP007044.2\|WP_024913659.1\|88409_88934_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|179895
NZ_CP007044.2\|WP_024913663.1\|69676_73393_-\|DUF4132-domain-containing-protein	unknown	unknown	gnl\|CDD\|379270
NZ_CP007044.2\|WP_024913665.1\|65922_68454_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007044.2\|WP_024913657.1\|90296_92435_+\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|236436
NZ_CP007044.2\|WP_024913661.1\|86251_86887_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374267
NZ_CP007044.2\|WP_024913667.1\|62735_64778_-\|SWIM-zinc-finger-family-protein	unknown	unknown	gnl\|CDD\|309540
NZ_CP007044.2\|WP_024913669.1\|61271_61628_-\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|366350
NZ_CP007044.2\|WP_024913653.1\|97003_97447_+\|phosphonate-C-P-lyase-system-protein-PhnG	unknown	unknown	gnl\|CDD\|377702

Protein	Function_ID	Function_description	E-value
NZ_CP007044.2\|WP_024913668.1\|61660_62560_-\|hypothetical-protein	gnl\|CDD\|379628	pfam14503, YhfZ_C, YhfZ C-terminal domain. This domain is often found in association with the helix-turn-helix domain HTH_41 (pfam14502). It includes YhfZ proteins from Escherichia coli and Shigella flexneri.	2.16146e-104
NZ_CP007044.2\|WP_071882773.1\|74799_86100_-\|non-ribosomal-peptide-synthetase	gnl\|CDD\|237054	PRK12316, PRK12316, peptide synthase; Provisional.	0
NZ_CP007044.2\|WP_024913660.1\|88098_88392_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	1.71007e-40
NZ_CP007044.2\|WP_024913672.1\|58474_58840_-\|DUF2620-domain-containing-protein	gnl\|CDD\|378513	pfam10941, DUF2620, Protein of unknown function DUF2620. This is a bacterial family of proteins with unknown function.	8.32717e-55
NZ_CP007044.2\|WP_024913664.1\|68468_69569_-\|AAA-family-ATPase	gnl\|CDD\|336785	pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.	3.12772e-40
NZ_CP007044.2\|WP_024913652.1\|97450_98032_+\|phosphonate-C-P-lyase-system-protein-PhnH	gnl\|CDD\|236655	PRK10147, phnH, phosphonate C-P lyase system protein PhnH.	1.38508e-68
NZ_CP007044.2\|WP_024913658.1\|89040_89949_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.74503e-77
NZ_CP007044.2\|WP_024913670.1\|60081_61236_-\|YhfX-family-PLP-dependent-enzyme	gnl\|CDD\|143486	cd06811, PLPDE_III_yhfX_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.	0
NZ_CP007044.2\|WP_037407090.1\|96274_97003_+\|phosphonate-metabolism-transcriptional-regulator-PhnF	gnl\|CDD\|182227	PRK10079, PRK10079, phosphonate metabolism transcriptional regulator PhnF; Provisional.	5.57655e-164
NZ_CP007044.2\|WP_024913666.1\|64774_65926_-\|VWA-domain-containing-protein	gnl\|CDD\|283431	pfam05762, VWA_CoxE, VWA domain containing CoxE-like protein. This family is annotated by SMART as containing a VWA (von Willebrand factor type A) domain. The exact function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon is several bacteria.	7.53414e-39
NZ_CP007044.2\|WP_024913671.1\|58871_60089_-\|phosphopentomutase	gnl\|CDD\|237085	PRK12383, PRK12383, putative mutase; Provisional.	0
NZ_CP007044.2\|WP_024913656.1\|92833_93298_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl\|CDD\|236853	PRK11121, nrdG, anaerobic ribonucleoside-triphosphate reductase-activating protein.	3.44252e-122
NZ_CP007044.2\|WP_024913659.1\|88409_88934_-\|oxidoreductase	gnl\|CDD\|179895	PRK04930, PRK04930, glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional.	6.07434e-53
NZ_CP007044.2\|WP_024913663.1\|69676_73393_-\|DUF4132-domain-containing-protein	gnl\|CDD\|379270	pfam13569, DUF4132, Domain of unknown function (DUF4132). This domain might be involved in the biosynthesis of the molybdopterin cofactor in E.coli.	2.15884e-52
NZ_CP007044.2\|WP_024913657.1\|90296_92435_+\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|236436	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
NZ_CP007044.2\|WP_024913661.1\|86251_86887_-\|hypothetical-protein	gnl\|CDD\|374267	pfam15977, HTH_46, Winged helix-turn-helix DNA binding.	3.54956e-24
NZ_CP007044.2\|WP_024913667.1\|62735_64778_-\|SWIM-zinc-finger-family-protein	gnl\|CDD\|309540	pfam04434, SWIM, SWIM zinc finger. This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organized into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts.	0.00660404
NZ_CP007044.2\|WP_024913669.1\|61271_61628_-\|PRD-domain-containing-protein	gnl\|CDD\|366350	pfam00874, PRD, PRD domain. The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory domain found in bacterial transcriptional antiterminator such as BglG, SacY and LicT, as well as in activators such as MtlR and LevR. The PRD is phosphorylated on one or two conserved histidine residues. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria and are often characterized by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators pfam03123) or DNA (for activators), and a duplicated PRD module which is phosphorylated by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations modify the conformation and stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain. The structure of the LicT PRD domains has been solved in both the active (Structure 1h99) and inactive state (Structure 1tlv), revealing massive structural rearrangements upon activation.	0.000267548
NZ_CP007044.2\|WP_024913653.1\|97003_97447_+\|phosphonate-C-P-lyase-system-protein-PhnG	gnl\|CDD\|377702	pfam06754, PhnG, Phosphonate metabolism protein PhnG. This family consists of several bacterial phosphonate metabolism protein PhnG sequences. In Escherichia coli, the phn operon encodes proteins responsible for the uptake and breakdown of phosphonates. The exact function of PhnG is unknown, however it is thought likely that along with six other proteins PhnG makes up the the C-P (carbon-phosphorus) lyase.	5.36564e-67

>NZ_CP007044.2|WP_024913663.1|69676_73393_-|DUF4132-domain-containing-protein
MIRKLLDLVPIFGKSDVSMIEKLLQEVLLPLAECDQALPKKALRYVIDGSNTDVFLALSQVDAAKAATLLKTPGTLGWWYGGNINTGKFNTLMTQGINARHKLYAKVGESFSSEQLVRLAKVIAAACQDININRYTTELPTWVLYLLGDAFYTTFSENRKLHFEHRNGWNIKLLADIIAQETDKPAEFVLFALFDRKDINSYHTDNLGRLLKMPDIPAYLQEKKEFVRSTLIENLSASGLVQFIHYLNANTTMRDFFADVIITLATNPQKTVRRAAEPLLNTLPPASVKQHLTEILLKGAPKQRSQAADLFARQGENQDVLQAALKTETSKAVIKSLESALKRFEVVENANSIQETALPAFESLRDTLLPESAKDLLVSNYQEMLENARIRAEKEIEDNKTATHKYQWAQDYYKRLGKFDEQKCRSLIDKLNSSKADFNHEVREVLTYKNRLYNLPDFTLFHALRLLNYNSTLSSYHLNTIPDRLIANIELRQLEEVLGQCQFHEPARKVAGLFLGSYQDGLRFFSKPEQVWPFFIQHPDFIAEALQLMPDQSTQRYQTFELSRAINVLATYPSPPTQFVPRLMELALGENKTHRISAQKLLESLPNIHESAQEALTSSKQEIRITAIDWLMRLKHADSVAHLYTLLKKEKREVVRAALLTALEAFGEDISDYLSEKTLLAEAHAGLKAKPPASLAAWFDFNSLPVFHWQNKQPVDANIIHWWIVLAAKLKAPAGNALLQRYISLLSKESQQKLSELILYRFVAQDTKGPTLDEAMAEAQREAPGRLSAYKNWAKSYPEYYAQYASYTLEQVIENIKSEVLKRYLGSAINDKGLLALVCGIEGHVAVSVLRNYMRDHYPRRAQIEAMIEAVAVNNDPLIIQFLLSLSRRYRTASVQEKARLLVAHIAERNGWSADELADRTIPTAGMDDSGTLVLEYGARTFSAKLDAKQKLVLFNPEGKEIKALPAARKDDDEEQAKEAKKLFSTSKKELKQVIEQQSVRLYEAMCAQREWLSGDWQEYLFGHPVMRRLIEQLVWQELSGGEVINQFRPADDGCLLDLNDDEVTLSPNSTIRLAHAALLSEEDRQAWLAHFKDYKIKFLFAQMVNTLPALDLTQTEIEDRKGWLTDAFTLRGILTKLGYQRGPAEDGGSFSHYYKHFSSLNYYVNIGFSGSFVPEENIPAVLFDLSFEKNQQNYWNRNNSQLQQVPPILLAESYADYLKVADACAGFDPEWEKKTPW
>NZ_CP007044.2|WP_024913664.1|68468_69569_-|AAA-family-ATPase
MTEKSASVIRESAEVRFADELERLTQADKNNPKPQGWLRSPRAVRRFILGDDELNITPKFFGDDALVDRAIVTLLGKQGLMLVGEPGTAKSMLSELFAAAISGDSGLTIQGTAGTTEDHIKYSWNYALLLAEGPTQKALVSSPLYQGMVQGKIVRFEEITRCPPEIQDVLVSLMSEKQMMIPEMGDGARVNACPGFNLIGTANLRDRGVHEMSAALKRRFNFETVRPIQDPAFEIELIHTQLKRELGDLANAIVIPESVIELLVTTFQELRSGSTRDGGNIQTPDAVMSTAEAVNVAYACALEAHYLGEGVLHGGAIARQLIGVVLKDNADDIKRIRYYMDNVARERARNHEDWKAFFQASREFWR
>NZ_CP007044.2|WP_024913665.1|65922_68454_-|hypothetical-protein
MSLSSMALPARIRDALEAWQGLQAAQIYFAPVRHHSPACAYAVLSLIETVKPDHILIEGPDSFNALIPTLLDQQTCPPVAILGQAEALKKGDDTPRSAYFPFCEYSPEWQALQAGRQQAATLRFIDLPWNAQRDDEQPDTHSQSLQKERYLAHSQFISQLAKKCYCRDHDELWEHLFELRTVAALTDWQRLFHDTFIWCALARLDYEPEVLAAEGSSRREAHMLAHIQTVKQQQPHARILVVTGGFHTLALIEGLADALPRQFALTADQQQQFLAMQKRAEKDSAWLIRYSFDRLDALNGYASGMPSPAYYQKSWESLLQQRQEQAENLPTQHYRTQAGVAFLATVAQALREKHFDNPPSYLSVKQAAEQSLQLAALRNHPGPGRYDLLDGLQSAFIKGSLDESQQELWLAIKACFSGYQLGNIPVGTTTPPLVAETYARAAAFRFKLDDTLAKTTKLDIYRNTQHRLRSRFLHLLSFLDIHFARRVNGPDFLAGHQLDLLFEEWQYAWTPNVEGELIALSEKGTQLEAIALNTLLVMEEQLEAQGQNRSSQNAVTLLIQAALIGLQQRIPSLFTLLDRYIQQDFRLDSLTECGHKLLQLWRCHTLLDISDVTAIENRFHQLLPQTFFCLEHLAQGDEQQQEVHFQALLALRELIGLLPEMALSHDYRHDFYQQLARLNGKLNSVPLLKGAVDAICYLDDQADAATLTTQLDNAFSTGSDPESAVAYFVGIMRTAPELALRLPLLIDSLNRYLAGWDEQQFIGILPELRFAFSQLTPKQNANVASYIADITQSNAQDLSLHQVEFSDAQLLTALHLDQQLQQSLSAQGLWDWFGAETEKGAAS
>NZ_CP007044.2|WP_024913666.1|64774_65926_-|VWA-domain-containing-protein
MSQQDDFPEDKAQHIRRWRLVLGQYADNALGQVAFSADELKVERTLDYLYRREYQRRGMRQEAGRHGSLDASQLTAVNWLNQARKLFPSSTFERMQSQAIERYQISSFLNDPQTLRSMEPTKALAKTLMSLRGRMNEETRDAVKTIIRQVVEDILRQIQNTFRQSLTGRRNRFRRSLIANSRNFDWRKTIAANLKHYDPQQQRLVIQTPHFNSRMQQHMPWEVILCVDQSGSMASSIMYAAICASILAALPSVSVSLVVFDTQVVNLSHLAHDPVEVLMTVQLGGGTDIAGAMHYCETLIKNPKRTVFTLISDFEEGASLSRLLACTERMNSQQVKMLGLAALDDEASPVYDTAIAQKLADRGMQIAALTPDHFAQWLAEVMQ
>NZ_CP007044.2|WP_024913667.1|62735_64778_-|SWIM-zinc-finger-family-protein
MSWRTLYTHYDDDALIVFANAGLLRRARKDLDKVILTDAANGAFSSDGQEVVLAPEGIQKARCNCSAPGCCKHILAAVLWLQANAAPAAALPSAEEPSPPLLPGLLALDAVQLIKKSNKAECRLALKWWQQWQSITLRLEDNGTQLKIYLPDFDEPIIFMHASGYEGMLSSLPEQQQKAIHLAAIAKLFEQHGQSWPWPENLTETDGPRPLSDDEIALIHTVKTFIHSLLQQGLSHVSKSSATQLHLLNMSARAEGLPRLAAYLRGLSGQVALLAEKHFTLDESQVLRYLARLSAYLYQLTHAPIATLPQVRGQLRRQYNEKNDVLSLVPISANWWLADSGALGATFTFWDSDNQQLLQSTQARANRLDTQFHRQNVWSSLSFWKQTADSMMRKPFQLHHPRLSDEGTLAASGDAYAKTAPSLLSIDALQTLKTQFGTDNWQTLEHDFAQQLDDFLTPYVLYPKDYKSLAWYETEQCVVWEINDRADNAVFLRLYWGKAEQSSFEELRYITEKRLTVLAVSVQPVRKEQGIDFIPTTLWLKKEDGVELFYLDFDHYPRKKKPSMFISHIQNYMARKKQQSAILLGTVPTLAQQLSRPLLSVLEAQACTGRYGLSPQQKNDLAQCLQTANDLGMAFLASQLKHYLAQPVSQAENLLRLIWLCDRLQQLQSPLPIHLTGAEP
>NZ_CP007044.2|WP_024913668.1|61660_62560_-|hypothetical-protein
MTRRFIKKEGMALTLLARYLLGEQVGGRLKTIDELSQAFELSVGVVQNALKSLENQHYIALERRGRNGTLVQSINYAGLFSQAGIDNLVCAMPLPYTKLYEGLASGLKKQCQGISLYFAHMRGADIRIECLKNGIYDMAVTSRLAAENYLQQGDVRIALSLGEHSYVNAHHLICRQGQQDQIQRVGLDFRSPDQRLMTELFFANRQIEWVNIGYNEGLALIEKGQIDAMIWNLTEDLASHYLTSIPLAEHAIYQQATEAVVLINQDNHYIEQLLTRIVDINALLEHQRAVQAGLIDPSY
>NZ_CP007044.2|WP_024913669.1|61271_61628_-|PRD-domain-containing-protein
MEQRLQILASANLISAEVHQGMLKVVNKLEQQWGLVIRNSQGQMAITHMANALMRCARGEPVAAMDNELFSEVVESELFERLQMINNDLLSEFSIQIPESEKTYLLSNLYALHLAQAD
>NZ_CP007044.2|WP_024913670.1|60081_61236_-|YhfX-family-PLP-dependent-enzyme
MFLSALQKQNPALIEAAVALWQQGKVLPDTYLIDLDQLWENARLLLAVAKQYGLKLYAMPKQIGHNPYICQKLLDMGFAGIVAVDFKEANQLYRHRVPVAHIGHLVQPPLHLLPKILAEKPEVITVYSLEKAQQISAVAAQQNYTQPLLLKVYQPGDVLYPGQEAGFALDQLVDAIAHIQQLPNVRIVGATHFPCMLFDQARQETLATPNLATLLAGKAMIEQQGVPVEQLNAPSASSCATFPLLAEHGVTHAEPGHALTGTIPANQTGDQPERIAMLYLSEISHHFAGNSYFFGGGYYRRGHLQQALVFTGGKAQWAEVLPTDDSSIDYCLRLAGQWPIGNPVISCFRTQIFVTRSDVALVAGIQSGSPQLVATYDSFGRRYE
>NZ_CP007044.2|WP_024913671.1|58871_60089_-|phosphopentomutase
MSKFIVIVIDSFGVGAMPDVAEVRPQDIGANTCQHLLQSQPELRLATLEKLGLINALGFSANVMQANPQAVAGRALLQHEGGDTFMGHQEIMGTLPLPPLRMPFSAVIDRVEQALLAEKHQVERIAIGSLSYLWVDGAAAIGDNLEADLGQVYNISANLAVLTFEQVQAIGHIVRRCVKVGRVIAFGGLLENTQAIQAAAETRQQTYIGINAPKSGAYNRGFQVVHLGYGVDQSVQVPEQLHQVNIPTVLIGKVADIVANPHGISYEKLVDSQQIMDLTLQHVRQPGSAFICSNIQETDLAGHAQNPERYIDCLKLVDRNLASIIDSMSAEDCLVVMADHGNDPTIGHSKHTREQVPILVYQQGVKSIALGTRQTLADVGASVCEFFTAPAPQHGQSFLSLLRPR
>NZ_CP007044.2|WP_024913672.1|58474_58840_-|DUF2620-domain-containing-protein
MRFVIGGQIEKTKLAETVRRLAGDKATSVEIMGDIEAAMALKTGQADYYLGACNTGGGGALAMAIAIAGADKCITLGMPGKILSDDEISASVQAGKTAFGFTGQDIDAVVPVVIAAIFQRS
>NZ_CP007044.2|WP_071882773.1|74799_86100_-|non-ribosomal-peptide-synthetase
MHTALATPYTKLFWTEWQLAPLSTKYNMVMDQTISGGLDIHRLDRAVKRVIAKYPVLHSHLIEEGNELLWCPNGEDTVIALEKCDSLQSLARLAAQPFDLNKGPLLRYGLYQDRQNDVYEFVLVLHHITVDGFSTAELYAEISHAYNDEILPDDDIHQAGDITDKYQEYRLKLNEISTANPAEFWKKTLRGLPEINELPYIHHPDNQAVGQYIQFSLFLEKWYGLKSSIRHANEFLIFKTVWALLIARYCQSEAVHIAYPVSMESGSHLKLGAQVNTAVFPFFVHSGDNFADIYQRTLAHSRALKAKPGLRFTRWPIYEVLQNSGIRLNVSFAQAHLNNLTLALVGCQALCNHRFDNSLANAELVLEYQEQSENIVFRIRYAPDLFTPQQISAMAEQYQQLLHQVLLHPEKPVDSFPSLTPAQHHQQLFDWNTQPSAVVMAAGTLPQAIADQALQHPQRIALADDQQQLTYRELEQKSNRLARQIIKHYQHITQKDIGADTLIPFCLNRGVEMIVTMLAIMKTGAAYIPLEPQLPKQRISYILADSGAELLITEPGLQAKLQDMALPAALWVLDDVAAGDDTPLAVAPAPQQLAYVIYTSGTTGQPKGTLLEHQGVLNMVRGFQAAISRPGEALCCLQFASVVFDAHVAETYIALCGGHTLVVASEEQRHDLPALLALIEHHQVDFAILPPALLKLQPKIPECLSRMMVAGEAASQVCLDHYTRLGHRLFNGYGPSEASVCSSINLYQFNGANNIGRPLPGVRLYVLDHRQQPLPVGVVGELYIAGLGLARGYLNQPQLTQEKFIANPFAAAGETDYQRLYRSGDLVRWLPSGELEYVGRNDFQVKIRGHRIELGEIEQAFVAVTSVAHCAVVIQGRETPRIVAYYVTEITLNDEQVKRQLAELLPDYMVPAALVQLPALPLTINGKLDTRALPEPDYNQICHDYRPATTYQEKQLQAVWQQVMGLEDIGINDDFLRLGGDSITAIRLVSEMRRVGMAFRTQDLYQYRSIAGLLENVAAEAWPGTLLAEQGNLSQGIPLAPTQQWFFDQAFEQENYWNQSFLTRVPALDLGRLQQAVEALVNHHDMLRAGFTPEPQGYRQYYQAELVPHPIKHCNRAELAEAELAALFSAWQSGFDYQQGPLWQFGYVDGYQDGSARIFFACHHLIIDAVSWRILVEDLRRLYLGEALGPKSASYRQWVNALLDYAPADEAERDYWRRQCEQQRDYRAAFALSDELNLHYGQLAPEATERLVQMSAPVNEVLLAALLRTLRHYSHTGSHTLMLEGHGRDLPGGQLDVGRTLGWFTALYPVNFNLAENPQADIAQVHCALEAVPNQGIGYGVLRGRETATAHRLELRYPGVVFNYLGQFADREADWQLSAEFAGQNSHPANTSRDLLILNCWVADDQLAFRLDGMLAATALADIARQWLHEVQLLLEQGALASGNELPATLQQALQQRYAPQAIFPCNSLQQGFIYHYVSQPDDPSYRVQMVLDYFTALNPVCYRQAWEIAVARYPILRTCFNWQWQPLQVICTEIALDWQYLDYQPQQDWQASLSQLCSQQRAQAFDLQQPGLFRLRLVRISAQHSCLVYTVHHSITDGWSGQLLLDYVHQTYLKLLAGQRPDVRQETTYLQVQRYYLEQAANSRAYWQQRRVDQYQANDISYLLSVPYEPKNLVNCEQTTLKRLLPAAVFSSLQQLSQNQGVTLNVMLQFAWHKLLHVYSRQEVTLVGTTLSGRNLPIEGIAESVGLYINTLPLMVSWDNDHSCLQQLQAIQCSLNELDEHSYQPLAELSRGGAALFHTLLVFENYPNVDMHEMQVSIRSTAEKTDYPLNLLAHNEGDGLMLSLAYASAYLTEQKADTLLSLLATLLTHLPTHLCVPHHQLPLLAVTAPARQPAPAASPAVNPGLALHQNFMDYALQHPQAIAIVDALGNCSYGELYQAALVLSNQIRQCAGRDSALVAILLDKGRAQITAVLAVLMAGKAYLPMDKAWPEKRRLAIVEQAGVGIVLGDEPWQNAAFTSLLLDETGKAAGIACPQALLAPQHVAPDALAYVIFTSGSTGVPKGVAISHAAIQNTITALNARLQVGPQDAAFAISALSFDVSVYDIFGVLSVGGRLVIPTEVQRYQPQVCYQLVLQHQVTIWQSTPALFDLLLQHVEQYAAEAVSPLRVVMLGGDWVAPALAQRCHAWAAQCRFFNCWGVTESAICSTMYEVEHLESFTQSIPLGVTLANHALYVLDAALQPLPQGVAGELYIGGVGLAQGYFNDPERTSERFIFHPVSGERLYRTGDLGRVLEDGDTEFLGRVDFQVKLNGYRIELGEIERALSGVAEISQCVALVTACSPRILLYYTASQEMDKAYLHSLLAQTLPEYMRPADLIALESFPLSVSGKIDRRALPEPEPSVNPRAYVAPSSEQERLCCELWAEVLRCESVGIDDNFYSSGGNSIQAITLCNRLSQVLAREVTFALFSANPTVRQLCQQLAHPAEAQSPWPIAAQSLSRYPLSSSQMRLWFIEELIQGSHLYHVPMLFELGAEIEVDTYLLALQAVVKRHHLLRSTVVQRAEDGSTQSVLQHKPLPVERLRLEASEWEPALTAAIHRPFDLRKEYPLRHLLIERRETNGQLTRFSLLNFHHIVFDGWSANLLLAELEAHYAFLAWDAALAVPELTIQYADYARWLDCQPESERHQVRQRFWLDKMQGYQQLALPTDYPRPKEFDHRGATVPFQLDIELSEQLRNLARETGVTLHAVLLTAFTLLLGKYSNQQDIIIGAPVANRPHAQVEPLIGLFVNTLALRNVIQPEIRVDEMIRQVFANTVACQAYQDMPLETLVESLNVERDLSRQPLFQVVFSVEQAIGGQQEKPLFTPLDLSHCYQVAKFDLGLMIEDGQPRLAANLNYACALFSPETINGFIQHFQQLLRTMVQTPAVNVADLSLLSAAEQCKLLQPVVETRPSAEYARAIHDGFMQWAQEHPYDIALIDAQGRYTYGQLYQQALVLSNQIRQGNVDSSALIAVVLDKGRAQIVAVLAVLMAGCAYLPMDASWPENRRLGVIQQAGCRLVLTDHPWLHNTFTTICLDEAGRARGLPYPGKLLPPEPIMPEQLAYVIFTSGSTGVPKGVAIQHMAANNTLVDINQRLNVGPGDAALAISALSFDLSVYDIFGLLSVGGRLVIPSEKQRYQPDAWCQLMLEHRVTLWQSAPALFELLMQYVEREKIQPNHWLGRVMLSGDWIPVNLPQRCHCWAPDCRFLSAGGATEVAIWSIVYEVEKGATFQQSIPYGSALTNQHFYILDEQLSPVPAGIVGELYIGGVGLSTGYYNDLDRTSERFIRHPVTGVRLYRTGDLGRWLADGNIEFRGRIDSQVKINGYRVELGEIESTLMDFGAIKQCLVVKSTGEQERLIAYYVSEVALDHSRLLAHVQACLPGYMVPAAFIPLEAFPLNASGKIDRQRLPAPEYTHAEREYVAPESEQERQLCALWQEALQQETIGVTDDFFACGGSSILAISLCQKMSGLLAESVPVVKLFKHRTIRGMLTVESYQPIQRLNRYQPDAGNLWLIHPAIVGCEAYLNFAQALEGEINCFGVDNYNLYHQQQLGDLSAVASCYLANMERQGLLDQPRVQLLGWSLGGVIALEIAARLEARGIQQIQLYLLDSFYQAKVNYQDMPDLRRKMLAEMGIDGEAVLRALAVEAAEHAISQGQLSGRLRHTQVTLFKATQISSYYQSLVGSGATWLSEDNGVGAVCDRLKIIPLACNHHNIIDCVAEIRAVIKPLR
>NZ_CP007044.2|WP_024913661.1|86251_86887_-|hypothetical-protein
MLKIEKPHAAFNRLLNELLPHAEKVAPRQPSGVTEGLQIKNDPEFFKLFLLDKGSANLCRLEDGLIISTVFSPYVIGLSFYPGAGVYYSIELGAYSSLYQISRTRAQYLIHKLDLQKEYISAVSYKMSLLYLRDGRVLKYKSEDIVKNMLIHLMELPEDFRKNTSVLKFIEQRTTLSRSSIQRILLNLKDENRVDIINSRLVDIRNLFRSE
>NZ_CP007044.2|WP_024913660.1|88098_88392_+|GIY-YIG-nuclease-family-protein
MDEIIWHLYMLRMPGGMLYTGITTDVARRIAQHQTGKGAKALRGKGELELVFHCQIGDRSTALKLEYQVKQLSKKQKENLVAHQPMSLHDLLPSPPR
>NZ_CP007044.2|WP_024913659.1|88409_88934_-|oxidoreductase
MPRILVLTAHRFPDDSRINKALIEALCLLPNVTVHELVRVYPNYQIDVAHEQELLQTHDVIVMLFPFYWYSSPAILSEWQDAVLTYGFAYGREGTKLHGKPLQLVVTIGGSAQDYSSEGRNRYPVVDLLRPFNAMANLTGMDYLPPHLVQGVFDMSDERLAQEALSVVKLVQGF
>NZ_CP007044.2|WP_024913658.1|89040_89949_+|LysR-family-transcriptional-regulator
MSLPFDVHRLLPAFLSAAQAQNFSAAARQLGVTPAAVSKNIRVLEEKLALRLFQRNTHSVVLTEEGKALLAQVAPLWQALANTLETASGTQQQPSGTVRVSMIPGFGRQILMPLIPEFLARYPQIDLDLSLDARVVNLVGEGFDIGIGSQIAPDSRLVARPLYPMQMLLAAAPAYLARHGTPQTPADLQHHQALLHRNPASGRCVKWRLQQHGATQALDLPGRLITSQPEMLLDITLAGLGIAYLAQWYADKHFAQGTLQPVLQEYWPRPTQIWLYYASADLPPRVRAWVDFLLARVPSSTA
>NZ_CP007044.2|WP_024913657.1|90296_92435_+|anaerobic-ribonucleoside-triphosphate-reductase
MKPVVIKRDGCQVYFDEDRIKQAIERAALAAGVVDADYCATVARVVAQQMEQQPRVDIHEIQQAVENQLMAGHYKQLARTYIEYRHDRDIARELRGRLNQEIRGLVEQSNVALLNENANKDSKVIPTQRDLLAGIVAKHYAKQHILPRDVVLAHERGEIHYHDLDYSPFFPMFNCMLIDLKGMLTNGFKMGNAEIEPPKSISTATAVTAQIIAQVASHIYGGTTINRIDEILAPFVTASFHKHQEIAQQWQIPDTAGYAMARTEKECYDAFQSLEYEVNTLHTANGQTPFVTFGFGLGVSWESRMIQQSILKNRIAGLGKNHKTAVFPKLVFAIRDGLNHKFGDTNYDIKQLALECASKRMYPDILNYEQVVKVTGSFKTPMGCRSFLGTYEENGEQIHDGRNNIGVISLNLPRIALEAKGDESRFWALLDQRLLLAKKALMTRIARLEGIKARVAPILYMEGACGVRLKADDNIAEIFKHGRASISLGYIGVHETINALFGTEKHVYDNEALRAKAVAIIEHLKAATESWKAETGYGFSLYSTPSENLCDRFCRLDTSEFGVVPGVTDKGYYTNSFHLDVEKKVNPYDKLDFEAPYPPLANGGFICYGEYPNLQHNLKALEDVWDYSYTRVPYYGTNTPIDECYECGFTGEFSCTSKGFTCPKCGNHDSAKVSVTRRVCGYLGSPDARPFNAGKQEEVKRRVKHLGNGQIG
>NZ_CP007044.2|WP_024913656.1|92833_93298_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MNYHQYYPIDVVNGPGTRCTLFVAGCVHQCPGCYNKSTWRLNSGLPFTPQMEDRIIADLNDSRVPRQGLSLSGGDPLHPANVAAVLQLVKRVRAECPNKDIWLWTGYRLDELDSEQRQIVDRINVLIDGKFVQALKDPALIWRGSSNQVVHKLR
>NZ_CP007044.2|WP_037407090.1|96274_97003_+|phosphonate-metabolism-transcriptional-regulator-PhnF
MMHLSRPLTSYPTRYQQIAAQLEQELCSQYRCGDYLPPEQQLAERYQVNRHTLRRAVDELVERGWLQRRHGIGILVLMRPFNYPLHAKARFSQNLLEQGSHPTSERLLAVLRPCNGHIAAALSRAEGETIIHLRTLRRVNGIPISVIDHYLPDLDWWPALQQFHSGSLHEFIQQHIHQQLTRRQTRISARRAQAKESRLLEIATHAPLLCVRTLNTCTGSDWVAEYSVSLARADMIELTMEH
>NZ_CP007044.2|WP_024913653.1|97003_97447_+|phosphonate-C-P-lyase-system-protein-PhnG
MQALQQRQRWMSVLAHSQPAQLRNHWQALNLSPRYHSLRAPEIGLAQLQGRMGATGRRFVLGDMTVTRAVVQLENGGQGYSYITGRDKAHAELCALADALLQQPASHELLQQRLIEPLAALQQEQRQLRARSVAASRVDFFTLVRGE
>NZ_CP007044.2|WP_024913652.1|97450_98032_+|phosphonate-C-P-lyase-system-protein-PhnH
MALQAGFDQPIEQSQQAFRLILKALSEPGQTVTLPGGPAWGALNAASTAVLLTLADRETPLQLAAALKSEQVLTNIRFHTGAPLATHHAEIVLALFDAQLQAADLQALPHGSEISPELSASVVVQITALEGGPKRRLSGPGLEKPREISPQLPIALWDYLLERPQRFPLGLDIMLTCGERLLAIPRTTRVEEC

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Crispr_ID: NZ_CP007044_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007044_2

87353-87860

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGCGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGCGCGGCAGTGAAC	CRT
TTTCTAAGCTGCCTGCGCGGCAGTGAAC	PILER-CR

8 spacers

The CRISPR arrays of NZ_CP007044_2

>merge|NZ_CP007044|2|87353-87860|CRISPRCasFinder,CRT,PILER-CR
TTTTCCGGCTGCCTGTGCGGCAGTGAACTGATCAATGAGTTGTAACTATTCAGATGTATCTTTCTAAGCTGCCTGCACGGCAGTGAACTTGCTAAAATATATAACTCTTCGTTGGTATATTTTCTAAGCTACCTGTGCGGCAGTGAACGTCATCTGCCAGATTGTTCGTGTAATGCCATTTTTCTAAGCTGCCTGCGCGGCAGTGAACGCGGCATGGTTTCCCCAAGCGCGAATGATATTTTTCTAAGCTGCCTGCGCGGCAGTGAACGCACGAGCTTCACGCTCATGCTCAGGGTAAGATTTCTAAGCTGCCTGCGCGGCAGTGAACCCGGTGATACAATTTTTTCAGTTTCAGTGACATTTCTAAGCTGCCTGCGCGGCAGTGAACAAAAATCCGTTAGGCGGCGAATTGATGAAAGCTTTCTAAGCTGCCTGCGCGGCAGTGAACTAGGAAGCTCGTAGGCGAATTTTAAGCGGGGATTTCTAAGCTGCCTGCGCGGCAGTGAAC

>NZ_CP007044|2|2|87353-87860|CRISPRCasFinder
TTTTCCGGCTGCCTGTGCGGCAGTGAAC	TGATCAATGAGTTGTAACTATTCAGATGTATC
TTTCTAAGCTGCCTGCACGGCAGTGAAC	TTGCTAAAATATATAACTCTTCGTTGGTATAT
TTTCTAAGCTACCTGTGCGGCAGTGAAC	GTCATCTGCCAGATTGTTCGTGTAATGCCATT
TTTCTAAGCTGCCTGCGCGGCAGTGAAC	GCGGCATGGTTTCCCCAAGCGCGAATGATATT
TTTCTAAGCTGCCTGCGCGGCAGTGAAC	GCACGAGCTTCACGCTCATGCTCAGGGTAAGA
TTTCTAAGCTGCCTGCGCGGCAGTGAAC	CCGGTGATACAATTTTTTCAGTTTCAGTGACA
TTTCTAAGCTGCCTGCGCGGCAGTGAAC	AAAAATCCGTTAGGCGGCGAATTGATGAAAGC
TTTCTAAGCTGCCTGCGCGGCAGTGAAC	TAGGAAGCTCGTAGGCGAATTTTAAGCGGGGA
TTTCTAAGCTGCCTGCGCGGCAGTGAAC

>NZ_CP007044|2|2|87353-87860|CRT
TTTTCCGGCTGCCTGTGCGGCAGTGAAC	TGATCAATGAGTTGTAACTATTCAGATGTATC
TTTCTAAGCTGCCTGCACGGCAGTGAAC	TTGCTAAAATATATAACTCTTCGTTGGTATAT
TTTCTAAGCTACCTGTGCGGCAGTGAAC	GTCATCTGCCAGATTGTTCGTGTAATGCCATT
TTTCTAAGCTGCCTGCGCGGCAGTGAAC	GCGGCATGGTTTCCCCAAGCGCGAATGATATT
TTTCTAAGCTGCCTGCGCGGCAGTGAAC	GCACGAGCTTCACGCTCATGCTCAGGGTAAGA
TTTCTAAGCTGCCTGCGCGGCAGTGAAC	CCGGTGATACAATTTTTTCAGTTTCAGTGACA
TTTCTAAGCTGCCTGCGCGGCAGTGAAC	AAAAATCCGTTAGGCGGCGAATTGATGAAAGC
TTTCTAAGCTGCCTGCGCGGCAGTGAAC	TAGGAAGCTCGTAGGCGAATTTTAAGCGGGGA
TTTCTAAGCTGCCTGCGCGGCAGTGAAC

>NZ_CP007044|2|2|87413-87860|PILER-CR
TTTCTAAGCTGCCTGCACGGCAGTGAAC	TTGCTAAAATATATAACTCTTCGTTGGTATAT
TTTCTAAGCTACCTGTGCGGCAGTGAAC	GTCATCTGCCAGATTGTTCGTGTAATGCCATT
TTTCTAAGCTGCCTGCGCGGCAGTGAAC	GCGGCATGGTTTCCCCAAGCGCGAATGATATT
TTTCTAAGCTGCCTGCGCGGCAGTGAAC	GCACGAGCTTCACGCTCATGCTCAGGGTAAGA
TTTCTAAGCTGCCTGCGCGGCAGTGAAC	CCGGTGATACAATTTTTTCAGTTTCAGTGACA
TTTCTAAGCTGCCTGCGCGGCAGTGAAC	AAAAATCCGTTAGGCGGCGAATTGATGAAAGC
TTTCTAAGCTGCCTGCGCGGCAGTGAAC	TAGGAAGCTCGTAGGCGAATTTTAAGCGGGGA
TTTCTAAGCTGCCTGCGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007044.2\|WP_071882773.1\|74799_86100_-\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|237054
NZ_CP007044.2\|WP_024913668.1\|61660_62560_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379628
NZ_CP007044.2\|WP_025297197.1\|99091_99943_+\|alpha-D-ribose-1-methylphosphonate-5-phosphate-C-P-lyase-PhnJ	unknown	unknown	gnl\|CDD\|226154
NZ_CP007044.2\|WP_024913660.1\|88098_88392_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
NZ_CP007044.2\|WP_024913661.1\|86251_86887_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374267
NZ_CP007044.2\|WP_024913651.1\|98031_99099_+\|carbon-phosphorus-lyase-complex-subunit-PhnI	unknown	unknown	gnl\|CDD\|226153
NZ_CP007044.2\|WP_024913664.1\|68468_69569_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|336785
NZ_CP007044.2\|WP_024913652.1\|97450_98032_+\|phosphonate-C-P-lyase-system-protein-PhnH	unknown	unknown	gnl\|CDD\|236655
NZ_CP007044.2\|WP_024913658.1\|89040_89949_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP007044.2\|WP_024913670.1\|60081_61236_-\|YhfX-family-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|143486
NZ_CP007044.2\|WP_037407090.1\|96274_97003_+\|phosphonate-metabolism-transcriptional-regulator-PhnF	unknown	unknown	gnl\|CDD\|182227
NZ_CP007044.2\|WP_024913666.1\|64774_65926_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|283431
NZ_CP007044.2\|WP_024913663.1\|69676_73393_-\|DUF4132-domain-containing-protein	unknown	unknown	gnl\|CDD\|379270
NZ_CP007044.2\|WP_024913656.1\|92833_93298_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl\|CDD\|236853
NZ_CP007044.2\|WP_024913659.1\|88409_88934_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|179895
NZ_CP007044.2\|WP_024913653.1\|97003_97447_+\|phosphonate-C-P-lyase-system-protein-PhnG	unknown	unknown	gnl\|CDD\|377702
NZ_CP007044.2\|WP_024913665.1\|65922_68454_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007044.2\|WP_024913657.1\|90296_92435_+\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|236436
NZ_CP007044.2\|WP_024913667.1\|62735_64778_-\|SWIM-zinc-finger-family-protein	unknown	unknown	gnl\|CDD\|309540
NZ_CP007044.2\|WP_024913669.1\|61271_61628_-\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|366350

Protein	Function_ID	Function_description	E-value
NZ_CP007044.2\|WP_071882773.1\|74799_86100_-\|non-ribosomal-peptide-synthetase	gnl\|CDD\|237054	PRK12316, PRK12316, peptide synthase; Provisional.	0
NZ_CP007044.2\|WP_024913668.1\|61660_62560_-\|hypothetical-protein	gnl\|CDD\|379628	pfam14503, YhfZ_C, YhfZ C-terminal domain. This domain is often found in association with the helix-turn-helix domain HTH_41 (pfam14502). It includes YhfZ proteins from Escherichia coli and Shigella flexneri.	2.16146e-104
NZ_CP007044.2\|WP_025297197.1\|99091_99943_+\|alpha-D-ribose-1-methylphosphonate-5-phosphate-C-P-lyase-PhnJ	gnl\|CDD\|226154	COG3627, PhnJ, Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism].	0
NZ_CP007044.2\|WP_024913660.1\|88098_88392_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	1.71007e-40
NZ_CP007044.2\|WP_024913661.1\|86251_86887_-\|hypothetical-protein	gnl\|CDD\|374267	pfam15977, HTH_46, Winged helix-turn-helix DNA binding.	3.54956e-24
NZ_CP007044.2\|WP_024913651.1\|98031_99099_+\|carbon-phosphorus-lyase-complex-subunit-PhnI	gnl\|CDD\|226153	COG3626, PhnI, Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism].	0
NZ_CP007044.2\|WP_024913664.1\|68468_69569_-\|AAA-family-ATPase	gnl\|CDD\|336785	pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.	3.12772e-40
NZ_CP007044.2\|WP_024913652.1\|97450_98032_+\|phosphonate-C-P-lyase-system-protein-PhnH	gnl\|CDD\|236655	PRK10147, phnH, phosphonate C-P lyase system protein PhnH.	1.38508e-68
NZ_CP007044.2\|WP_024913658.1\|89040_89949_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.74503e-77
NZ_CP007044.2\|WP_024913670.1\|60081_61236_-\|YhfX-family-PLP-dependent-enzyme	gnl\|CDD\|143486	cd06811, PLPDE_III_yhfX_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.	0
NZ_CP007044.2\|WP_037407090.1\|96274_97003_+\|phosphonate-metabolism-transcriptional-regulator-PhnF	gnl\|CDD\|182227	PRK10079, PRK10079, phosphonate metabolism transcriptional regulator PhnF; Provisional.	5.57655e-164
NZ_CP007044.2\|WP_024913666.1\|64774_65926_-\|VWA-domain-containing-protein	gnl\|CDD\|283431	pfam05762, VWA_CoxE, VWA domain containing CoxE-like protein. This family is annotated by SMART as containing a VWA (von Willebrand factor type A) domain. The exact function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon is several bacteria.	7.53414e-39
NZ_CP007044.2\|WP_024913663.1\|69676_73393_-\|DUF4132-domain-containing-protein	gnl\|CDD\|379270	pfam13569, DUF4132, Domain of unknown function (DUF4132). This domain might be involved in the biosynthesis of the molybdopterin cofactor in E.coli.	2.15884e-52
NZ_CP007044.2\|WP_024913656.1\|92833_93298_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl\|CDD\|236853	PRK11121, nrdG, anaerobic ribonucleoside-triphosphate reductase-activating protein.	3.44252e-122
NZ_CP007044.2\|WP_024913659.1\|88409_88934_-\|oxidoreductase	gnl\|CDD\|179895	PRK04930, PRK04930, glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional.	6.07434e-53
NZ_CP007044.2\|WP_024913653.1\|97003_97447_+\|phosphonate-C-P-lyase-system-protein-PhnG	gnl\|CDD\|377702	pfam06754, PhnG, Phosphonate metabolism protein PhnG. This family consists of several bacterial phosphonate metabolism protein PhnG sequences. In Escherichia coli, the phn operon encodes proteins responsible for the uptake and breakdown of phosphonates. The exact function of PhnG is unknown, however it is thought likely that along with six other proteins PhnG makes up the the C-P (carbon-phosphorus) lyase.	5.36564e-67
NZ_CP007044.2\|WP_024913657.1\|90296_92435_+\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|236436	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
NZ_CP007044.2\|WP_024913667.1\|62735_64778_-\|SWIM-zinc-finger-family-protein	gnl\|CDD\|309540	pfam04434, SWIM, SWIM zinc finger. This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organized into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts.	0.00660404
NZ_CP007044.2\|WP_024913669.1\|61271_61628_-\|PRD-domain-containing-protein	gnl\|CDD\|366350	pfam00874, PRD, PRD domain. The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory domain found in bacterial transcriptional antiterminator such as BglG, SacY and LicT, as well as in activators such as MtlR and LevR. The PRD is phosphorylated on one or two conserved histidine residues. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria and are often characterized by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators pfam03123) or DNA (for activators), and a duplicated PRD module which is phosphorylated by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations modify the conformation and stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain. The structure of the LicT PRD domains has been solved in both the active (Structure 1h99) and inactive state (Structure 1tlv), revealing massive structural rearrangements upon activation.	0.000267548

>NZ_CP007044.2|WP_024913661.1|86251_86887_-|hypothetical-protein
MLKIEKPHAAFNRLLNELLPHAEKVAPRQPSGVTEGLQIKNDPEFFKLFLLDKGSANLCRLEDGLIISTVFSPYVIGLSFYPGAGVYYSIELGAYSSLYQISRTRAQYLIHKLDLQKEYISAVSYKMSLLYLRDGRVLKYKSEDIVKNMLIHLMELPEDFRKNTSVLKFIEQRTTLSRSSIQRILLNLKDENRVDIINSRLVDIRNLFRSE
>NZ_CP007044.2|WP_071882773.1|74799_86100_-|non-ribosomal-peptide-synthetase
MHTALATPYTKLFWTEWQLAPLSTKYNMVMDQTISGGLDIHRLDRAVKRVIAKYPVLHSHLIEEGNELLWCPNGEDTVIALEKCDSLQSLARLAAQPFDLNKGPLLRYGLYQDRQNDVYEFVLVLHHITVDGFSTAELYAEISHAYNDEILPDDDIHQAGDITDKYQEYRLKLNEISTANPAEFWKKTLRGLPEINELPYIHHPDNQAVGQYIQFSLFLEKWYGLKSSIRHANEFLIFKTVWALLIARYCQSEAVHIAYPVSMESGSHLKLGAQVNTAVFPFFVHSGDNFADIYQRTLAHSRALKAKPGLRFTRWPIYEVLQNSGIRLNVSFAQAHLNNLTLALVGCQALCNHRFDNSLANAELVLEYQEQSENIVFRIRYAPDLFTPQQISAMAEQYQQLLHQVLLHPEKPVDSFPSLTPAQHHQQLFDWNTQPSAVVMAAGTLPQAIADQALQHPQRIALADDQQQLTYRELEQKSNRLARQIIKHYQHITQKDIGADTLIPFCLNRGVEMIVTMLAIMKTGAAYIPLEPQLPKQRISYILADSGAELLITEPGLQAKLQDMALPAALWVLDDVAAGDDTPLAVAPAPQQLAYVIYTSGTTGQPKGTLLEHQGVLNMVRGFQAAISRPGEALCCLQFASVVFDAHVAETYIALCGGHTLVVASEEQRHDLPALLALIEHHQVDFAILPPALLKLQPKIPECLSRMMVAGEAASQVCLDHYTRLGHRLFNGYGPSEASVCSSINLYQFNGANNIGRPLPGVRLYVLDHRQQPLPVGVVGELYIAGLGLARGYLNQPQLTQEKFIANPFAAAGETDYQRLYRSGDLVRWLPSGELEYVGRNDFQVKIRGHRIELGEIEQAFVAVTSVAHCAVVIQGRETPRIVAYYVTEITLNDEQVKRQLAELLPDYMVPAALVQLPALPLTINGKLDTRALPEPDYNQICHDYRPATTYQEKQLQAVWQQVMGLEDIGINDDFLRLGGDSITAIRLVSEMRRVGMAFRTQDLYQYRSIAGLLENVAAEAWPGTLLAEQGNLSQGIPLAPTQQWFFDQAFEQENYWNQSFLTRVPALDLGRLQQAVEALVNHHDMLRAGFTPEPQGYRQYYQAELVPHPIKHCNRAELAEAELAALFSAWQSGFDYQQGPLWQFGYVDGYQDGSARIFFACHHLIIDAVSWRILVEDLRRLYLGEALGPKSASYRQWVNALLDYAPADEAERDYWRRQCEQQRDYRAAFALSDELNLHYGQLAPEATERLVQMSAPVNEVLLAALLRTLRHYSHTGSHTLMLEGHGRDLPGGQLDVGRTLGWFTALYPVNFNLAENPQADIAQVHCALEAVPNQGIGYGVLRGRETATAHRLELRYPGVVFNYLGQFADREADWQLSAEFAGQNSHPANTSRDLLILNCWVADDQLAFRLDGMLAATALADIARQWLHEVQLLLEQGALASGNELPATLQQALQQRYAPQAIFPCNSLQQGFIYHYVSQPDDPSYRVQMVLDYFTALNPVCYRQAWEIAVARYPILRTCFNWQWQPLQVICTEIALDWQYLDYQPQQDWQASLSQLCSQQRAQAFDLQQPGLFRLRLVRISAQHSCLVYTVHHSITDGWSGQLLLDYVHQTYLKLLAGQRPDVRQETTYLQVQRYYLEQAANSRAYWQQRRVDQYQANDISYLLSVPYEPKNLVNCEQTTLKRLLPAAVFSSLQQLSQNQGVTLNVMLQFAWHKLLHVYSRQEVTLVGTTLSGRNLPIEGIAESVGLYINTLPLMVSWDNDHSCLQQLQAIQCSLNELDEHSYQPLAELSRGGAALFHTLLVFENYPNVDMHEMQVSIRSTAEKTDYPLNLLAHNEGDGLMLSLAYASAYLTEQKADTLLSLLATLLTHLPTHLCVPHHQLPLLAVTAPARQPAPAASPAVNPGLALHQNFMDYALQHPQAIAIVDALGNCSYGELYQAALVLSNQIRQCAGRDSALVAILLDKGRAQITAVLAVLMAGKAYLPMDKAWPEKRRLAIVEQAGVGIVLGDEPWQNAAFTSLLLDETGKAAGIACPQALLAPQHVAPDALAYVIFTSGSTGVPKGVAISHAAIQNTITALNARLQVGPQDAAFAISALSFDVSVYDIFGVLSVGGRLVIPTEVQRYQPQVCYQLVLQHQVTIWQSTPALFDLLLQHVEQYAAEAVSPLRVVMLGGDWVAPALAQRCHAWAAQCRFFNCWGVTESAICSTMYEVEHLESFTQSIPLGVTLANHALYVLDAALQPLPQGVAGELYIGGVGLAQGYFNDPERTSERFIFHPVSGERLYRTGDLGRVLEDGDTEFLGRVDFQVKLNGYRIELGEIERALSGVAEISQCVALVTACSPRILLYYTASQEMDKAYLHSLLAQTLPEYMRPADLIALESFPLSVSGKIDRRALPEPEPSVNPRAYVAPSSEQERLCCELWAEVLRCESVGIDDNFYSSGGNSIQAITLCNRLSQVLAREVTFALFSANPTVRQLCQQLAHPAEAQSPWPIAAQSLSRYPLSSSQMRLWFIEELIQGSHLYHVPMLFELGAEIEVDTYLLALQAVVKRHHLLRSTVVQRAEDGSTQSVLQHKPLPVERLRLEASEWEPALTAAIHRPFDLRKEYPLRHLLIERRETNGQLTRFSLLNFHHIVFDGWSANLLLAELEAHYAFLAWDAALAVPELTIQYADYARWLDCQPESERHQVRQRFWLDKMQGYQQLALPTDYPRPKEFDHRGATVPFQLDIELSEQLRNLARETGVTLHAVLLTAFTLLLGKYSNQQDIIIGAPVANRPHAQVEPLIGLFVNTLALRNVIQPEIRVDEMIRQVFANTVACQAYQDMPLETLVESLNVERDLSRQPLFQVVFSVEQAIGGQQEKPLFTPLDLSHCYQVAKFDLGLMIEDGQPRLAANLNYACALFSPETINGFIQHFQQLLRTMVQTPAVNVADLSLLSAAEQCKLLQPVVETRPSAEYARAIHDGFMQWAQEHPYDIALIDAQGRYTYGQLYQQALVLSNQIRQGNVDSSALIAVVLDKGRAQIVAVLAVLMAGCAYLPMDASWPENRRLGVIQQAGCRLVLTDHPWLHNTFTTICLDEAGRARGLPYPGKLLPPEPIMPEQLAYVIFTSGSTGVPKGVAIQHMAANNTLVDINQRLNVGPGDAALAISALSFDLSVYDIFGLLSVGGRLVIPSEKQRYQPDAWCQLMLEHRVTLWQSAPALFELLMQYVEREKIQPNHWLGRVMLSGDWIPVNLPQRCHCWAPDCRFLSAGGATEVAIWSIVYEVEKGATFQQSIPYGSALTNQHFYILDEQLSPVPAGIVGELYIGGVGLSTGYYNDLDRTSERFIRHPVTGVRLYRTGDLGRWLADGNIEFRGRIDSQVKINGYRVELGEIESTLMDFGAIKQCLVVKSTGEQERLIAYYVSEVALDHSRLLAHVQACLPGYMVPAAFIPLEAFPLNASGKIDRQRLPAPEYTHAEREYVAPESEQERQLCALWQEALQQETIGVTDDFFACGGSSILAISLCQKMSGLLAESVPVVKLFKHRTIRGMLTVESYQPIQRLNRYQPDAGNLWLIHPAIVGCEAYLNFAQALEGEINCFGVDNYNLYHQQQLGDLSAVASCYLANMERQGLLDQPRVQLLGWSLGGVIALEIAARLEARGIQQIQLYLLDSFYQAKVNYQDMPDLRRKMLAEMGIDGEAVLRALAVEAAEHAISQGQLSGRLRHTQVTLFKATQISSYYQSLVGSGATWLSEDNGVGAVCDRLKIIPLACNHHNIIDCVAEIRAVIKPLR
>NZ_CP007044.2|WP_024913663.1|69676_73393_-|DUF4132-domain-containing-protein
MIRKLLDLVPIFGKSDVSMIEKLLQEVLLPLAECDQALPKKALRYVIDGSNTDVFLALSQVDAAKAATLLKTPGTLGWWYGGNINTGKFNTLMTQGINARHKLYAKVGESFSSEQLVRLAKVIAAACQDININRYTTELPTWVLYLLGDAFYTTFSENRKLHFEHRNGWNIKLLADIIAQETDKPAEFVLFALFDRKDINSYHTDNLGRLLKMPDIPAYLQEKKEFVRSTLIENLSASGLVQFIHYLNANTTMRDFFADVIITLATNPQKTVRRAAEPLLNTLPPASVKQHLTEILLKGAPKQRSQAADLFARQGENQDVLQAALKTETSKAVIKSLESALKRFEVVENANSIQETALPAFESLRDTLLPESAKDLLVSNYQEMLENARIRAEKEIEDNKTATHKYQWAQDYYKRLGKFDEQKCRSLIDKLNSSKADFNHEVREVLTYKNRLYNLPDFTLFHALRLLNYNSTLSSYHLNTIPDRLIANIELRQLEEVLGQCQFHEPARKVAGLFLGSYQDGLRFFSKPEQVWPFFIQHPDFIAEALQLMPDQSTQRYQTFELSRAINVLATYPSPPTQFVPRLMELALGENKTHRISAQKLLESLPNIHESAQEALTSSKQEIRITAIDWLMRLKHADSVAHLYTLLKKEKREVVRAALLTALEAFGEDISDYLSEKTLLAEAHAGLKAKPPASLAAWFDFNSLPVFHWQNKQPVDANIIHWWIVLAAKLKAPAGNALLQRYISLLSKESQQKLSELILYRFVAQDTKGPTLDEAMAEAQREAPGRLSAYKNWAKSYPEYYAQYASYTLEQVIENIKSEVLKRYLGSAINDKGLLALVCGIEGHVAVSVLRNYMRDHYPRRAQIEAMIEAVAVNNDPLIIQFLLSLSRRYRTASVQEKARLLVAHIAERNGWSADELADRTIPTAGMDDSGTLVLEYGARTFSAKLDAKQKLVLFNPEGKEIKALPAARKDDDEEQAKEAKKLFSTSKKELKQVIEQQSVRLYEAMCAQREWLSGDWQEYLFGHPVMRRLIEQLVWQELSGGEVINQFRPADDGCLLDLNDDEVTLSPNSTIRLAHAALLSEEDRQAWLAHFKDYKIKFLFAQMVNTLPALDLTQTEIEDRKGWLTDAFTLRGILTKLGYQRGPAEDGGSFSHYYKHFSSLNYYVNIGFSGSFVPEENIPAVLFDLSFEKNQQNYWNRNNSQLQQVPPILLAESYADYLKVADACAGFDPEWEKKTPW
>NZ_CP007044.2|WP_024913664.1|68468_69569_-|AAA-family-ATPase
MTEKSASVIRESAEVRFADELERLTQADKNNPKPQGWLRSPRAVRRFILGDDELNITPKFFGDDALVDRAIVTLLGKQGLMLVGEPGTAKSMLSELFAAAISGDSGLTIQGTAGTTEDHIKYSWNYALLLAEGPTQKALVSSPLYQGMVQGKIVRFEEITRCPPEIQDVLVSLMSEKQMMIPEMGDGARVNACPGFNLIGTANLRDRGVHEMSAALKRRFNFETVRPIQDPAFEIELIHTQLKRELGDLANAIVIPESVIELLVTTFQELRSGSTRDGGNIQTPDAVMSTAEAVNVAYACALEAHYLGEGVLHGGAIARQLIGVVLKDNADDIKRIRYYMDNVARERARNHEDWKAFFQASREFWR
>NZ_CP007044.2|WP_024913665.1|65922_68454_-|hypothetical-protein
MSLSSMALPARIRDALEAWQGLQAAQIYFAPVRHHSPACAYAVLSLIETVKPDHILIEGPDSFNALIPTLLDQQTCPPVAILGQAEALKKGDDTPRSAYFPFCEYSPEWQALQAGRQQAATLRFIDLPWNAQRDDEQPDTHSQSLQKERYLAHSQFISQLAKKCYCRDHDELWEHLFELRTVAALTDWQRLFHDTFIWCALARLDYEPEVLAAEGSSRREAHMLAHIQTVKQQQPHARILVVTGGFHTLALIEGLADALPRQFALTADQQQQFLAMQKRAEKDSAWLIRYSFDRLDALNGYASGMPSPAYYQKSWESLLQQRQEQAENLPTQHYRTQAGVAFLATVAQALREKHFDNPPSYLSVKQAAEQSLQLAALRNHPGPGRYDLLDGLQSAFIKGSLDESQQELWLAIKACFSGYQLGNIPVGTTTPPLVAETYARAAAFRFKLDDTLAKTTKLDIYRNTQHRLRSRFLHLLSFLDIHFARRVNGPDFLAGHQLDLLFEEWQYAWTPNVEGELIALSEKGTQLEAIALNTLLVMEEQLEAQGQNRSSQNAVTLLIQAALIGLQQRIPSLFTLLDRYIQQDFRLDSLTECGHKLLQLWRCHTLLDISDVTAIENRFHQLLPQTFFCLEHLAQGDEQQQEVHFQALLALRELIGLLPEMALSHDYRHDFYQQLARLNGKLNSVPLLKGAVDAICYLDDQADAATLTTQLDNAFSTGSDPESAVAYFVGIMRTAPELALRLPLLIDSLNRYLAGWDEQQFIGILPELRFAFSQLTPKQNANVASYIADITQSNAQDLSLHQVEFSDAQLLTALHLDQQLQQSLSAQGLWDWFGAETEKGAAS
>NZ_CP007044.2|WP_024913666.1|64774_65926_-|VWA-domain-containing-protein
MSQQDDFPEDKAQHIRRWRLVLGQYADNALGQVAFSADELKVERTLDYLYRREYQRRGMRQEAGRHGSLDASQLTAVNWLNQARKLFPSSTFERMQSQAIERYQISSFLNDPQTLRSMEPTKALAKTLMSLRGRMNEETRDAVKTIIRQVVEDILRQIQNTFRQSLTGRRNRFRRSLIANSRNFDWRKTIAANLKHYDPQQQRLVIQTPHFNSRMQQHMPWEVILCVDQSGSMASSIMYAAICASILAALPSVSVSLVVFDTQVVNLSHLAHDPVEVLMTVQLGGGTDIAGAMHYCETLIKNPKRTVFTLISDFEEGASLSRLLACTERMNSQQVKMLGLAALDDEASPVYDTAIAQKLADRGMQIAALTPDHFAQWLAEVMQ
>NZ_CP007044.2|WP_024913667.1|62735_64778_-|SWIM-zinc-finger-family-protein
MSWRTLYTHYDDDALIVFANAGLLRRARKDLDKVILTDAANGAFSSDGQEVVLAPEGIQKARCNCSAPGCCKHILAAVLWLQANAAPAAALPSAEEPSPPLLPGLLALDAVQLIKKSNKAECRLALKWWQQWQSITLRLEDNGTQLKIYLPDFDEPIIFMHASGYEGMLSSLPEQQQKAIHLAAIAKLFEQHGQSWPWPENLTETDGPRPLSDDEIALIHTVKTFIHSLLQQGLSHVSKSSATQLHLLNMSARAEGLPRLAAYLRGLSGQVALLAEKHFTLDESQVLRYLARLSAYLYQLTHAPIATLPQVRGQLRRQYNEKNDVLSLVPISANWWLADSGALGATFTFWDSDNQQLLQSTQARANRLDTQFHRQNVWSSLSFWKQTADSMMRKPFQLHHPRLSDEGTLAASGDAYAKTAPSLLSIDALQTLKTQFGTDNWQTLEHDFAQQLDDFLTPYVLYPKDYKSLAWYETEQCVVWEINDRADNAVFLRLYWGKAEQSSFEELRYITEKRLTVLAVSVQPVRKEQGIDFIPTTLWLKKEDGVELFYLDFDHYPRKKKPSMFISHIQNYMARKKQQSAILLGTVPTLAQQLSRPLLSVLEAQACTGRYGLSPQQKNDLAQCLQTANDLGMAFLASQLKHYLAQPVSQAENLLRLIWLCDRLQQLQSPLPIHLTGAEP
>NZ_CP007044.2|WP_024913668.1|61660_62560_-|hypothetical-protein
MTRRFIKKEGMALTLLARYLLGEQVGGRLKTIDELSQAFELSVGVVQNALKSLENQHYIALERRGRNGTLVQSINYAGLFSQAGIDNLVCAMPLPYTKLYEGLASGLKKQCQGISLYFAHMRGADIRIECLKNGIYDMAVTSRLAAENYLQQGDVRIALSLGEHSYVNAHHLICRQGQQDQIQRVGLDFRSPDQRLMTELFFANRQIEWVNIGYNEGLALIEKGQIDAMIWNLTEDLASHYLTSIPLAEHAIYQQATEAVVLINQDNHYIEQLLTRIVDINALLEHQRAVQAGLIDPSY
>NZ_CP007044.2|WP_024913669.1|61271_61628_-|PRD-domain-containing-protein
MEQRLQILASANLISAEVHQGMLKVVNKLEQQWGLVIRNSQGQMAITHMANALMRCARGEPVAAMDNELFSEVVESELFERLQMINNDLLSEFSIQIPESEKTYLLSNLYALHLAQAD
>NZ_CP007044.2|WP_024913670.1|60081_61236_-|YhfX-family-PLP-dependent-enzyme
MFLSALQKQNPALIEAAVALWQQGKVLPDTYLIDLDQLWENARLLLAVAKQYGLKLYAMPKQIGHNPYICQKLLDMGFAGIVAVDFKEANQLYRHRVPVAHIGHLVQPPLHLLPKILAEKPEVITVYSLEKAQQISAVAAQQNYTQPLLLKVYQPGDVLYPGQEAGFALDQLVDAIAHIQQLPNVRIVGATHFPCMLFDQARQETLATPNLATLLAGKAMIEQQGVPVEQLNAPSASSCATFPLLAEHGVTHAEPGHALTGTIPANQTGDQPERIAMLYLSEISHHFAGNSYFFGGGYYRRGHLQQALVFTGGKAQWAEVLPTDDSSIDYCLRLAGQWPIGNPVISCFRTQIFVTRSDVALVAGIQSGSPQLVATYDSFGRRYE
>NZ_CP007044.2|WP_024913660.1|88098_88392_+|GIY-YIG-nuclease-family-protein
MDEIIWHLYMLRMPGGMLYTGITTDVARRIAQHQTGKGAKALRGKGELELVFHCQIGDRSTALKLEYQVKQLSKKQKENLVAHQPMSLHDLLPSPPR
>NZ_CP007044.2|WP_024913659.1|88409_88934_-|oxidoreductase
MPRILVLTAHRFPDDSRINKALIEALCLLPNVTVHELVRVYPNYQIDVAHEQELLQTHDVIVMLFPFYWYSSPAILSEWQDAVLTYGFAYGREGTKLHGKPLQLVVTIGGSAQDYSSEGRNRYPVVDLLRPFNAMANLTGMDYLPPHLVQGVFDMSDERLAQEALSVVKLVQGF
>NZ_CP007044.2|WP_024913658.1|89040_89949_+|LysR-family-transcriptional-regulator
MSLPFDVHRLLPAFLSAAQAQNFSAAARQLGVTPAAVSKNIRVLEEKLALRLFQRNTHSVVLTEEGKALLAQVAPLWQALANTLETASGTQQQPSGTVRVSMIPGFGRQILMPLIPEFLARYPQIDLDLSLDARVVNLVGEGFDIGIGSQIAPDSRLVARPLYPMQMLLAAAPAYLARHGTPQTPADLQHHQALLHRNPASGRCVKWRLQQHGATQALDLPGRLITSQPEMLLDITLAGLGIAYLAQWYADKHFAQGTLQPVLQEYWPRPTQIWLYYASADLPPRVRAWVDFLLARVPSSTA
>NZ_CP007044.2|WP_024913657.1|90296_92435_+|anaerobic-ribonucleoside-triphosphate-reductase
MKPVVIKRDGCQVYFDEDRIKQAIERAALAAGVVDADYCATVARVVAQQMEQQPRVDIHEIQQAVENQLMAGHYKQLARTYIEYRHDRDIARELRGRLNQEIRGLVEQSNVALLNENANKDSKVIPTQRDLLAGIVAKHYAKQHILPRDVVLAHERGEIHYHDLDYSPFFPMFNCMLIDLKGMLTNGFKMGNAEIEPPKSISTATAVTAQIIAQVASHIYGGTTINRIDEILAPFVTASFHKHQEIAQQWQIPDTAGYAMARTEKECYDAFQSLEYEVNTLHTANGQTPFVTFGFGLGVSWESRMIQQSILKNRIAGLGKNHKTAVFPKLVFAIRDGLNHKFGDTNYDIKQLALECASKRMYPDILNYEQVVKVTGSFKTPMGCRSFLGTYEENGEQIHDGRNNIGVISLNLPRIALEAKGDESRFWALLDQRLLLAKKALMTRIARLEGIKARVAPILYMEGACGVRLKADDNIAEIFKHGRASISLGYIGVHETINALFGTEKHVYDNEALRAKAVAIIEHLKAATESWKAETGYGFSLYSTPSENLCDRFCRLDTSEFGVVPGVTDKGYYTNSFHLDVEKKVNPYDKLDFEAPYPPLANGGFICYGEYPNLQHNLKALEDVWDYSYTRVPYYGTNTPIDECYECGFTGEFSCTSKGFTCPKCGNHDSAKVSVTRRVCGYLGSPDARPFNAGKQEEVKRRVKHLGNGQIG
>NZ_CP007044.2|WP_024913656.1|92833_93298_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MNYHQYYPIDVVNGPGTRCTLFVAGCVHQCPGCYNKSTWRLNSGLPFTPQMEDRIIADLNDSRVPRQGLSLSGGDPLHPANVAAVLQLVKRVRAECPNKDIWLWTGYRLDELDSEQRQIVDRINVLIDGKFVQALKDPALIWRGSSNQVVHKLR
>NZ_CP007044.2|WP_037407090.1|96274_97003_+|phosphonate-metabolism-transcriptional-regulator-PhnF
MMHLSRPLTSYPTRYQQIAAQLEQELCSQYRCGDYLPPEQQLAERYQVNRHTLRRAVDELVERGWLQRRHGIGILVLMRPFNYPLHAKARFSQNLLEQGSHPTSERLLAVLRPCNGHIAAALSRAEGETIIHLRTLRRVNGIPISVIDHYLPDLDWWPALQQFHSGSLHEFIQQHIHQQLTRRQTRISARRAQAKESRLLEIATHAPLLCVRTLNTCTGSDWVAEYSVSLARADMIELTMEH
>NZ_CP007044.2|WP_024913653.1|97003_97447_+|phosphonate-C-P-lyase-system-protein-PhnG
MQALQQRQRWMSVLAHSQPAQLRNHWQALNLSPRYHSLRAPEIGLAQLQGRMGATGRRFVLGDMTVTRAVVQLENGGQGYSYITGRDKAHAELCALADALLQQPASHELLQQRLIEPLAALQQEQRQLRARSVAASRVDFFTLVRGE
>NZ_CP007044.2|WP_024913652.1|97450_98032_+|phosphonate-C-P-lyase-system-protein-PhnH
MALQAGFDQPIEQSQQAFRLILKALSEPGQTVTLPGGPAWGALNAASTAVLLTLADRETPLQLAAALKSEQVLTNIRFHTGAPLATHHAEIVLALFDAQLQAADLQALPHGSEISPELSASVVVQITALEGGPKRRLSGPGLEKPREISPQLPIALWDYLLERPQRFPLGLDIMLTCGERLLAIPRTTRVEEC
>NZ_CP007044.2|WP_024913651.1|98031_99099_+|carbon-phosphorus-lyase-complex-subunit-PhnI
MYVAVKGGEKAIEAAHQLQEHLRRGDESVPALSAEQIEQQLGLAVDRVMTEGGIYDRELAALAIKQASGDLVEAIFLLRAYRTTLPRLAVSEPLLTANMRLERRISAIYKELPGGQVLGPTYDYTHRLLDFALLAEGATPTAPRADEAQPESCAHVFDLLCQQQLAQAERDDGSTPDDITRHPPVYPGSRSARLQQLVRGDEGFLLALSYSTQRGYGRNHPFAGEIRSGYVSLEIVPEELGFALDIGEILLTECEMVNGFVDPPGQPAHFTRGYGLVFGRAERKAMAMAMVDRALQTTEYGESIASPAQDEEFVLAHADNVEAAGFVSHLKLPHYVDFQAELELLKRLQQGARDE
>NZ_CP007044.2|WP_025297197.1|99091_99943_+|alpha-D-ribose-1-methylphosphonate-5-phosphate-C-P-lyase-PhnJ
MNDVLTGYSLGYLDEQTKRMIRRAILKAVAIPGYQVPFGGREMPMPYGWGTGGIQITASIIGRADVLKVIDQGADDTTNAVSIRRFFQRVAGVATTERTPEATLIQTRHRIPETALQQDQILIYQVPIPEPLRFIEPRETETRKMHALEEYGVMQVKLYEDIARYGHIATTYAYPVKVNDRYVMDPSPIPKFDNPKMHMMPALQLFGAGREKRIYALPPFTKVESLDFDDHPFSVQQWDQPCALCGSRHSYLDEVVLDDQGNRMFVCSDTDFCRQQLNPEAQH

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Crispr_ID: NZ_CP007044_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007044_3

122624-123551

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR

15 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1

The CRISPR arrays of NZ_CP007044_3

>merge|NZ_CP007044|3|122624-123551|CRISPRCasFinder,CRT,PILER-CR
TATCTAAGCTGCCTGTACGGCAGTGAACTCTCGCTATGCTACGGGTGTTTCTGCCCGGATTTTCTAAGCTGCCTGTGCGGCAGTGAACCCTGAAAGACGAACTGCCAGAGGCCAGAGATTTTTCTAAGCTGCCTATGCGGCAGTGAACTTAAAAAGCTGAACGAAGAAGCCAGAAAGGCGTTTCTAAGCTGCCTATGCGGCAGTGAACCTTCCAGATGGGCTATCACAAGCTGAATACATTTTCTAAGCTGCCTATGCGGCAGTGAACTATGCGAATTTCCCGCTGATCACGTTGGCGCTTTCTAAGCTGCCTATGCGGCAGTGAACTACCGGGCTTCAAGTTGGTGGAAGGTAAGTTATTTCTAAGCTGCCTGTGCGGCAGTGAACGAAGCCATTGCACGGGCCGCAGTTATGGTCATTTTCTAAGCTGCCTGTGCGGCAGTGAACTTGTTCATGGTCTTGACCAGTTTACGGCCCGTTTTCTAAGCTGCCTGTGCGGCAGTGAACATTTCATCCCTTAACTCTTTTAATTTATCAGTTTTCTAAGCTGCCTGTGCGGCAGTGAACGGGAAACCTCTGACCCTTCCGCGATCCTGGTCTTTCTAAGCTGCCTGTGCGGCAGTGAACAAGCTCGTTTACTGCATTCATAATGTTCCGTGTTTCTAAGCTGCCTGTGCGGCAGTGAACAATTGGCTCTTTTGAACTGTATCAACGCCACATTTCTAAGCTGCCTGTGCGGCAGTGAACTGCCTCTAAAGCCTCTTTTGACAGATGTTCCAGTTTCTAAGCTGCCTGTGCGGCAGTGAACGCTGATAAAGAGGCTGGGTTGCTATCTGGTATTTTCTAAGCTGCCTGTGCGGCAGTGAACATCGGCGGATGCATACAACGGGGATCATCTGTTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP007044|3|3|122624-123551|CRISPRCasFinder
TATCTAAGCTGCCTGTACGGCAGTGAAC	TCTCGCTATGCTACGGGTGTTTCTGCCCGGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCTGAAAGACGAACTGCCAGAGGCCAGAGATT
TTTCTAAGCTGCCTATGCGGCAGTGAAC	TTAAAAAGCTGAACGAAGAAGCCAGAAAGGCG
TTTCTAAGCTGCCTATGCGGCAGTGAAC	CTTCCAGATGGGCTATCACAAGCTGAATACAT
TTTCTAAGCTGCCTATGCGGCAGTGAAC	TATGCGAATTTCCCGCTGATCACGTTGGCGC
TTTCTAAGCTGCCTATGCGGCAGTGAAC	TACCGGGCTTCAAGTTGGTGGAAGGTAAGTTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAGCCATTGCACGGGCCGCAGTTATGGTCAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGTTCATGGTCTTGACCAGTTTACGGCCCGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTTCATCCCTTAACTCTTTTAATTTATCAGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GGGAAACCTCTGACCCTTCCGCGATCCTGGTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAGCTCGTTTACTGCATTCATAATGTTCCGTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AATTGGCTCTTTTGAACTGTATCAACGCCACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGCCTCTAAAGCCTCTTTTGACAGATGTTCCAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCTGATAAAGAGGCTGGGTTGCTATCTGGTAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATCGGCGGATGCATACAACGGGGATCATCTGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP007044|3|3|122624-123551|CRT
TATCTAAGCTGCCTGTACGGCAGTGAAC	TCTCGCTATGCTACGGGTGTTTCTGCCCGGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCTGAAAGACGAACTGCCAGAGGCCAGAGATT
TTTCTAAGCTGCCTATGCGGCAGTGAAC	TTAAAAAGCTGAACGAAGAAGCCAGAAAGGCG
TTTCTAAGCTGCCTATGCGGCAGTGAAC	CTTCCAGATGGGCTATCACAAGCTGAATACAT
TTTCTAAGCTGCCTATGCGGCAGTGAAC	TATGCGAATTTCCCGCTGATCACGTTGGCGC
TTTCTAAGCTGCCTATGCGGCAGTGAAC	TACCGGGCTTCAAGTTGGTGGAAGGTAAGTTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAGCCATTGCACGGGCCGCAGTTATGGTCAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGTTCATGGTCTTGACCAGTTTACGGCCCGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTTCATCCCTTAACTCTTTTAATTTATCAGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GGGAAACCTCTGACCCTTCCGCGATCCTGGTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAGCTCGTTTACTGCATTCATAATGTTCCGTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AATTGGCTCTTTTGAACTGTATCAACGCCACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGCCTCTAAAGCCTCTTTTGACAGATGTTCCAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCTGATAAAGAGGCTGGGTTGCTATCTGGTAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATCGGCGGATGCATACAACGGGGATCATCTGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP007044|3|3|122626-123551|PILER-CR
TCTAAGCTGCCTGTACGGCAGTGAACTC	TCGCTATGCTACGGGTGTTTCTGCCCGGATTT
TCTAAGCTGCCTGTGCGGCAGTGAACCC	TGAAAGACGAACTGCCAGAGGCCAGAGATTTT
TCTAAGCTGCCTATGCGGCAGTGAACTT	AAAAAGCTGAACGAAGAAGCCAGAAAGGCGTT
TCTAAGCTGCCTATGCGGCAGTGAACCT	TCCAGATGGGCTATCACAAGCTGAATACATTT
TCTAAGCTGCCTATGCGGCAGTGAACTA	TGCGAATTTCCCGCTGATCACGTTGGCGCTT
TCTAAGCTGCCTATGCGGCAGTGAACTA	CCGGGCTTCAAGTTGGTGGAAGGTAAGTTATT
TCTAAGCTGCCTGTGCGGCAGTGAACGA	AGCCATTGCACGGGCCGCAGTTATGGTCATTT
TCTAAGCTGCCTGTGCGGCAGTGAACTT	GTTCATGGTCTTGACCAGTTTACGGCCCGTTT
TCTAAGCTGCCTGTGCGGCAGTGAACAT	TTCATCCCTTAACTCTTTTAATTTATCAGTTT
TCTAAGCTGCCTGTGCGGCAGTGAACGG	GAAACCTCTGACCCTTCCGCGATCCTGGTCTT
TCTAAGCTGCCTGTGCGGCAGTGAACAA	GCTCGTTTACTGCATTCATAATGTTCCGTGTT
TCTAAGCTGCCTGTGCGGCAGTGAACAA	TTGGCTCTTTTGAACTGTATCAACGCCACATT
TCTAAGCTGCCTGTGCGGCAGTGAACTG	CCTCTAAAGCCTCTTTTGACAGATGTTCCAGTT
TCTAAGCTGCCTGTGCGGCAGTGAACGC	TGATAAAGAGGCTGGGTTGCTATCTGGTATTT
TCTAAGCTGCCTGTGCGGCAGTGAACAT	CGGCGGATGCATACAACGGGGATCATCTGTTT
TCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007044.2\|WP_024912536.1\|132099_133530_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|182112
NZ_CP007044.2\|WP_024912534.1\|135355_136375_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380494
NZ_CP007044.2\|WP_024912538.1\|127563_130809_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
NZ_CP007044.2\|WP_024912550.1\|113325_114501_-\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
NZ_CP007044.2\|WP_024912540.1\|125266_126190_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP007044.2\|WP_024912539.1\|126186_127536_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|187866
NZ_CP007044.2\|WP_024912533.1\|136432_138658_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007044.2\|WP_024912552.1\|111104_111887_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187602
NZ_CP007044.2\|WP_024912542.1\|123680_124235_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NZ_CP007044.2\|WP_024912544.1\|117909_118839_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP007044.2\|WP_024912547.1\|115486_116323_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007044.2\|WP_024912545.1\|117136_117742_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007044.2\|WP_045784771.1\|119650_122308_+\|peptidase-M66	unknown	unknown	gnl\|CDD\|287440
NZ_CP007044.2\|WP_024912541.1\|124244_125249_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP007044.2\|WP_024912535.1\|133678_135154_-\|PTS-cellobiose/arbutin/salicin-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|182081
NZ_CP007044.2\|WP_024912548.1\|115250_115481_-\|tautomerase	unknown	unknown	gnl\|CDD\|179355
NZ_CP007044.2\|WP_024912537.1\|130805_131786_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP007044.2\|WP_024912546.1\|116326_117106_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367638
NZ_CP007044.2\|WP_024912549.1\|114588_115248_-\|HAD-IB-family-hydrolase	unknown	unknown	gnl\|CDD\|273654
NZ_CP007044.2\|WP_024912551.1\|111891_113145_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882

Protein	Function_ID	Function_description	E-value
NZ_CP007044.2\|WP_024912536.1\|132099_133530_-\|6-phospho-beta-glucosidase	gnl\|CDD\|182112	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional.	0
NZ_CP007044.2\|WP_024912534.1\|135355_136375_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380494	cd06270, PBP1_GalS-like, ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type 1 periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar binding of ABC-type transport systems.	5.91687e-113
NZ_CP007044.2\|WP_024912538.1\|127563_130809_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NZ_CP007044.2\|WP_024912550.1\|113325_114501_-\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
NZ_CP007044.2\|WP_024912540.1\|125266_126190_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	9.8613e-155
NZ_CP007044.2\|WP_024912539.1\|126186_127536_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	0
NZ_CP007044.2\|WP_024912552.1\|111104_111887_-\|SDR-family-oxidoreductase	gnl\|CDD\|187602	cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR. This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	1.52303e-57
NZ_CP007044.2\|WP_024912542.1\|123680_124235_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	5.67879e-99
NZ_CP007044.2\|WP_024912544.1\|117909_118839_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.15849e-33
NZ_CP007044.2\|WP_024912548.1\|115250_115481_-\|tautomerase	gnl\|CDD\|179355	PRK01964, PRK01964, 4-oxalocrotonate tautomerase; Provisional.	2.00019e-07
NZ_CP007044.2\|WP_045784771.1\|119650_122308_+\|peptidase-M66	gnl\|CDD\|287440	pfam10462, Peptidase_M66, Peptidase M66. This family of metallopeptidases contains StcE, a virulence factor found in Shiga toxigenic Escherichia coli organisms. StcE peptidase cleaves C1 esterase inhibitor.	6.75187e-86
NZ_CP007044.2\|WP_024912535.1\|133678_135154_-\|PTS-cellobiose/arbutin/salicin-transporter-subunit-IIBC	gnl\|CDD\|182081	PRK09796, PRK09796, PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional.	0
NZ_CP007044.2\|WP_024912541.1\|124244_125249_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP007044.2\|WP_024912537.1\|130805_131786_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NZ_CP007044.2\|WP_024912546.1\|116326_117106_-\|hypothetical-protein	gnl\|CDD\|367638	pfam03756, AfsA, A-factor biosynthesis hotdog domain. The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a HotDog domain.	5.79268e-18
NZ_CP007044.2\|WP_024912549.1\|114588_115248_-\|HAD-IB-family-hydrolase	gnl\|CDD\|273654	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled here are all bacterial. The IB subfamily includes the enzyme phosphoserine phosphatase (TIGR00338). Due to this relationship, several of these sequences have been annotated as "phosphoserine phosphatase related proteins," or "Phosphoserine phosphatase-family enzymes." There is presently no evidence that any of the enzymes in this model possess PSPase activity. OMNI\|NTL01ML1250 is annotated as a "possible transferase," however this is due to the C-terminal domain found on this sequence which is homologous to a group of glycerol-phosphate acyltransferases (between trusted and noise to TIGR00530). A subset of these sequences including OMNI\|CC1962, the Caulobacter crescentus CicA protein cluster together and may represent a separate equivalog. [Unknown function, Enzymes of unknown specificity].	4.10571e-45
NZ_CP007044.2\|WP_024912551.1\|111891_113145_-\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.19974e-42

>NZ_CP007044.2|WP_045784771.1|119650_122308_+|peptidase-M66
MTIRITKIASLMIATLATGPLSAEARTPLIFNTTTPQNDLTGAMAAQVQFAQSQILPAQPKEGDRQPTLTSLRKSLLLVRPLQADEVTPVRVQAQDANGKVLGTLTLAPPSALPETVYHLSDAPKEDVDFTPTNGSSVTISSSADLDKLSDKSASFLKERLTGKALVDIQTADGYWVQDIYLPAGAEWQDKMVRVRSNAGYSSNIYYGNKQVTVSRGQTLQFKSVNGQWFYQEELENNRITYAQNTWSGELPAEWILPGLSLTISQGKHSGELTRIRVGAPNELLLHTIDIGMLTPPRDRFDFAKDPEAHREYFQTIPVSRMIVSQYAPVHLQEVMLPDGTLLTDFDPSTGGWHTGTMREQIGKELISHGIDNANYGINNTATQGNKSYSFDAAQLVAHNSRGNYANGVQVHGGSGGAGIVTLDKSLGNEFSHEVGHNYGLGHYVDGFRGSVHRSADQINSSWGWDSDKRRFIPNFFPTRTNADACLDGECQPPFEGRKFGFDSMAGGSPFSNANRFTLYTPNSAAIIQSFLESKAVFDANSPTGFSKWDAATARMEPYEHKVEKLEQIDAPVDDLSENRLMTLFDEYSVVNIAMWDGHWTRYIRVPAASDKNQNRSLTINHKASYNSILTINGEDILIQKGVKKSFTSDGQRWQESAEIDTRVVRKPEQFGVPVTTLVGYYDPQGTLPSYIYPALHGAYGFTYSDDSTEIADGDCQLQVETDNGILHFKLTNHRAISTLMNKFHINVPTASQPSRATVLCHNQSFTERTLSSAPEGLSYTVNGRALPAKHNEGCIISNQTGDKYCLPIGERSGYSLPSWIYNHEVHVDAGSEAKVYLSDWDNLSYSRVGEFIGNVATSELKNVRAWNGMYLDFSKPKSMRVVSK
>NZ_CP007044.2|WP_024912544.1|117909_118839_+|LysR-family-transcriptional-regulator
MLEKVMRIFSKRLPTIRQLQFFIAVCDDMSFRRAAERLGVSQPPLSTQIRNLEENLGTTLFLRDTHQVSLTEAGKLFELQSRKLLNTMVDNLAEIKKHSISDQGFRAGTTKTLDFNLMPKIQHMLDELSNANTIYKDTYTSKQLLMEMLNGHLDFSIVAEKPYQNELLEFKFIYKEINLITLPSSHPASKKEFVDLKDVSDLPLYWFNRLANIDYFDKCEGIFDTLPFKLTRKPEPSDPLRMLSEISLGRGMAFIPYSMCMVSRSGITYKRMTPYYEDKFKINIYLSWRKDLKKISALNAIQKILSLEP
>NZ_CP007044.2|WP_024912545.1|117136_117742_-|hypothetical-protein
MSANYLMISRYPLKKGMEPRLAELLQPSAMKNYYLSIQGENKELLEFNSYAGFNEIQHDENNLDNILDNLTELLSGDVKRELVKYVESPIASEKCFPDSEYVQLRHVEVVPEFHSQYRSWREETIFNVVRSNKDKIESFEAYHSVFSTQPGVMFVSAFSVAPEEYMKSFTDENYQKIIQQAGDKYITGGNDGLYTRIYQKI
>NZ_CP007044.2|WP_024912546.1|116326_117106_-|hypothetical-protein
MLKNQNTDLLVVGDKFHEFAMSNDIVTLSQLDLMTKIPSKVLARNNSVVIGQGVRKDTIGNILENYHHYNQQVSNIDLHTLLQEQYPQGSNSYTHKKEEHNILIGKAKKIDKDIYTLPLIIDERCELMGDHQSGKHLQGMLLVEAFRQTFIAITEEFYPFLGDIEKYFVINSLNTSFHNFIFPIAANIIYKVNDIDVNERREKISSRIEAWQNDVLCASMEANFTVYPLDIISKKEAELAEQAIVNHFIKINSNKMIPE
>NZ_CP007044.2|WP_024912547.1|115486_116323_-|hypothetical-protein
MEINKTYIYELSITTQGPLYPPSEVIDKNGDFVVIGTLPQEGERNWGMAIVDKKTPVPTFGYVEPYLIKKDLSNASIKELSDIELFTLPLPLPSNNYPMVFAPEQCPNAGEVVRDSCSLNQAYISDYRESDGRRKINKITLADWVKAEGTLTVTVADNSRSARFDFVFSHLIPNSLYTVMSLRENDLNPAMLSRPGPLGIPNVFVTDEHGSASYWAILDNPFPSNVDEDANRIINVVVLFMSSQQSYGGAIGLYGLGGDIHAHLKLKKSDFHDITTLG
>NZ_CP007044.2|WP_024912548.1|115250_115481_-|tautomerase
MPIIKITAWPFANEKSASLLIADVTRVIHNQLGCPLDKITVYIEEISPSRWGDGGIAGDNPDFKVKSRRMCYEDGE
>NZ_CP007044.2|WP_024912549.1|114588_115248_-|HAD-IB-family-hydrolase
MRQTAFYDVDDTLINIKSMFDFFQFWASENGLISQQEQFDSQFSVLARKMSSREELNRAYYRFFKGVPLLKIEQCAERWFKNSFSNTEIFISYTLKSILAHRVLGHNIVLVSGSMTPLLKPIAQLLGITDILCTKLATDQSGVVTGEILETQTIGEGKAIVIRQYALENDINLSACFAYGDDVSDIPMLACVGHPICIGEGTALSHYASNNNWPIVRVE
>NZ_CP007044.2|WP_024912550.1|113325_114501_-|acetyl-CoA-C-acetyltransferase
MEDIVIVGAKRTAIGSFQGGLSTVPATELGTAVIKDLLQTYNLKPENVDQVIMGQVLTAGCGQNPARQAALNAGLPNNVCALTINKVCGSGMIAIQLAIQAIRHGDAEVIIAGGQENMSLSPHILLSSRQGVRVGNSNIVDSMVNDGLTDAYNGYHMGITAENVADQYSISREEQDAYSIRSHQKALAAIEEGKFKAEISPVTVIHKKGSQVIDTDEGPRVTEAARLAKLKPAFHSQGTVTAGNASSLNDGAAAVIVCSASKAKELGLTPLVKISAFANTGICPSIMGVAPISAITQCLEKINKEISQIDLFECNEAFAAQALAIKRTLAIPKEKININGGAIALGHPIGASGCRILVSLIHQLSARNLKNGIAALCVGGGEGLAMAVARV
>NZ_CP007044.2|WP_024912551.1|111891_113145_-|MFS-transporter
MEIGAIMHANNILKNTMLDSELSSLMISVIGVVLSVGSVYITQLIFQEISASFHVDVLDARYSFSVSCFIYAISFFIFGPLSDRVSAKSLSLFGCAGVIICLFICLYITRYNIFLLAMALLGFFAAAVPAALFSYTAKNTEAYKLPRAMGLMISASIVGIIFSRSIIGILSDHFSWRMAFSMYAALVIVSMLLIIIGLKENVTVRHNHKKLSDVYINAIKILMDRKIVLFLSLGFLLFFSYLGLSSFLTYYLKGAPFNLSSTALGWLNFVGISAVGGAFISARLAMSIDKRKILITFLCGVSVSILVIAFGSNIYIVAFGIFSFFIFVFGIQPIIMSIINQLVDISSKGTISSLYLLSCLAGGSFGTYILGLVWSSMHWLGVVLICVSVSVINIVLAINYIGKYTASSAINPIRGSK
>NZ_CP007044.2|WP_024912552.1|111104_111887_-|SDR-family-oxidoreductase
MLNKSAVVTGATGSIGKEIARCLVEKNYKVILVGRSDSKLAQIKKELIGESNNQDSIVTHKIDISSQSSVEQGVAYIDKYYGPIDVLINAAGNGEPTDFFSTTEEDWQATMQAKLMGTIRMTQAVSRMMSKYNGGKVIIINGTFCYDPDPLFIINSTVNAALAGFTKACSKYLAAKHINLNVINPWITESESWSQTCEKLAKFKDIEKETLDENLKSMNPSKRYANTEDINNAILFLLSENSSFINGASLNIDGGATVGF
>NZ_CP007044.2|WP_024912542.1|123680_124235_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MGHYIEIRILPDPDFGPSTLLEVLFAKLHRALGHVGQGQIGVSFPAAGKTLGDRLRLHGSLTALSTLDAQPWRKGLRDNTEHSGILPVPEKVKYRTVRRVQPKSNAERLRRRSVSKGWLTEEEARQRIPDSVEKRSSLPFIRLKSLSSEQTFLLFIEQGPLGDNATEGAFSAYGLSPTATIPWF
>NZ_CP007044.2|WP_024912541.1|124244_125249_-|type-I-F-CRISPR-associated-protein-Csy3
MAKATIKTASVLAFERKLANSDAMLYAGNWEQQGEWQPIKIQEKAVRGTISNRLKNAIASDPAKLDAEIQKANLQRVDVAALPFDCDTLKVSFTLRVLGNLAVPSVCNDQEYQAELANVINGYIAEQGFGELAARYAENLANGRFLWRNRVGAEAVKVCVKGKTQQWEFNSEDHSLRVFSPPQGALAALAQEIEQGLAGESFAFLSVEAFVRLGNGQEVFPSQELVLDSNSKKSKVLYQVADGAALHSQKVGNALRTIDTWYPDAAELGLGPIAVEPYGSVTSRGKAYRQPKQKMDFYTLLDNWVTKGDKPAVEQQHYVMAILIRGGVFGEKGE
>NZ_CP007044.2|WP_024912540.1|125266_126190_-|type-I-F-CRISPR-associated-protein-Csy2
MSTLIVLRHVRVENANAIAGLTYGFPAITHFLGFTHALSRKLQLTHDLELENCGVVCHQQQLHAHSSGWDRVFSLTRNPLTKEAKTAAFNEEGRMHMTVSLLIECNGVVANGREGAKALADHLAPLCLRQRLAGGTIVSIGEVSVMAYPDETKALRRLMRRLLPGFVLLDRSELLQAHFEVLKQKEPQAEMIDAWLDFAALKMQATVDETIQWRYVAKPEKGFLVPLQTGYQAISPLFPPGEVENARDPVTPFRFAEAVYGIGEWRSPHRINDLKTLLWHYHHLNDTYVCRSALSAAVEYDEFNEEE
>NZ_CP007044.2|WP_024912539.1|126186_127536_-|type-I-F-CRISPR-associated-protein-Csy1
MEDKTFSQLIARYIEGRKQPKLEAFDKEAEKRLAGLTDSEQLAVTQQDIAQQRRELEQRYEVRNWLTDAASRAGQISLVTHALKFTHSDAKGSSVFLSTAEGDLAYLATATLRNPALDAVGNAAALDCAKLLQMEYEGESLIAVLDRGDDSPLAALAESDRQLQQWVNGFKQVLTDKQPSSHKLAKQLYFPIGDNEYHLLSPLFSSSLAHAMHQRIADARFSDAAKEIYSAFKAGEWHPAARVSYPNTAVQNIGGTKPQNISYLNSVRGGRTWLLSCAAPSWKIISKPPTRHKSIFHDYGDFSRMAYPIVRELRHYLLSVKDLENTKDIRDSRLAFTDEIIDTLFNYVAMVQDLEVQAGWSAKEDCQLKRSQQLWLDAGRAKDDADFQFEREGGDWQKEIALDFGVWLNRRLQHEELKFGEVERREWSTAKLFKQRLREFEQDLKEGLA
>NZ_CP007044.2|WP_024912538.1|127563_130809_-|type-I-F-CRISPR-associated-helicase-Cas3
MNILLVAQCSKKALVETRRILDQFAERKGERTWQTAITQEGLNTLRKLLRKTARRNTAVACHWIKGANQTELLWIVGNLRCFNEQGAVPTNTTERDILKSQSENQWHSIETISLLAAIAGLFHDFGKANVLFQNGLRGEGKSFQPYRHEWISLRLFVAWVKGKSDREWLTALSHIGEPDEERMLGNLLKDSLDPFENPFIHLPPLAKTVAWLILSHHRLPVYLADEQHKPDLAQIECWLTQQLTADWNATNHLDPGWTAADQRNAWVFPYGTPVRSAQWRAKAQKFANRALQQPSLAHFGVLEQRFTSHLARLVLMLADHFYSSLPATAGWQDARYGAYANTDRSTKQCKQKLDEHNIGVGQNALLLGRSLPQIRSTLPALARHKGFKRRSEQAKFRWQDRAFDLTTAIRDRTQRQGFFGVNMASTGCGKTFANARIMYALADEKQGCRFSVALGLRTLTLQTGDALREKLALQEDDLAVLIGSMAVSQLHELNSDKALPLGTGSASADELFAEHQYVRYDGSLDDGRLSRWLSGAPTLHKLLSAPVLVTTIDHLIGATEAARGGKQIAPMLRLLTSDLVLDEPDDFDIADLPALCRLVNWAGVLGSRVLLSSATLPPALIQALFNAYRAGRADYQQACGQPDLPVNICCAWFDEHEPVQEDIQTTASFKQVHERFVARRVQQLQGAEILRRAQLIPVAAPSQRESDVLNSVAATLLSSMQQLHTAHHQVHESGKTVSLGVIRMANIDPLLAVAQRLLQTPVPPGWRIHYCVYHSQHPLAMRSYIEQRLDETLTRYNQQALWQIPEIKAALNGPEQRHLFVVLASPVAEVGRDHDYDWAIAEPSSMRSLIQLAGRIQRHRQQRCEIANLHILQKNVKALQGRELAYCRPGFESGKYLLDSHDLNEILLPEQYQTINAIPRAQEREKLEYKENFVDLEHYSLRAKLQGIKGEREYYAALWWREQATWCAEQQRRTPFRKSSPDELHYLWLEDESDEAIFQFPDSEPGQWKQSAGFSAIEPEFAAGNCAWMAMDYQQLYQRLADELNMEFSEVSQKFGEICLPEKEEGLWRYHPLLGVFDALE
>NZ_CP007044.2|WP_024912537.1|130805_131786_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MNNQFSPSDLKTILHSKRANLYYLQHCRILVNGGRVEYVTDEGKQSLYWNIPIANTTAVMLGTGTSVTQAAMREFAKAGVLVGFCGGGGTPLFAANEVEVDVSWLTSQSEYRPTEYLQHWVSFWFDDDKRLAAAIAFQQQRIAQIRTHWLSARMQREQAFEVEAAQLNPILDGFMQRLSTCQNSNDVLAQEAVMTKALYKLAANGVKYGEFSRAKRGGGIDIANRFLDHGNYLAYGLGATAAWVIGLPHGLSILHGKTRRGGLVFDIADLIKDALILPQAFIAAMAGEDEQQFRQRCLTGFQQADALDVMIDTLKATAESLSQVGK
>NZ_CP007044.2|WP_024912536.1|132099_133530_-|6-phospho-beta-glucosidase
MPASVFPADFLWGGALAANQAEGAYLAGGKGLTTVDMIPHGKDRLAVKLGQEKRFTLREDEFYPSHQGIDFYHRYKDDIALMAEMGFSVFRTSIAWSRIFPKGDETVPNAEGIAFYRDVFSECKKHGIEPLVTLCHFDVPMHLVQEYGSWRNRQMVGFFTHYARTCFEAFDGLVKYWLTFNEINILLHSPFSGAGLVFEPGDNQEQVKYQAAHHELLASALATKIAHEINPENQVGCMLAGGNFYPWSCKPADVWAALEKDRENLFFIDVQARGAYPSYTQRLFREKGISVAMEAGDSEILKHSVDFVSFSYYASRCASAEMNEHNSSAANIVKSLKNPHIQASEWGWGIDPLGLRITMNMMYDRYQKPLFLVENGLGAKDEINQQGEIDDEYRISYLREHIKAMADAIDDGIPVMGYTSWGCIDLVSASTGEMSKRYGFVYVDRDDRGNGTLARTRKKSFYWYQKVIASNGADLG
>NZ_CP007044.2|WP_024912535.1|133678_135154_-|PTS-cellobiose/arbutin/salicin-transporter-subunit-IIBC
MAKNYAAMSQSIVDAVGGANNVAALTHCMTRLRFVLNDDTAVDAAKLKAISGVLGVVRSENQCQVIIGNTVSQAYAEVLKLLPEGAAAQPAATGKNKITLKRIGAGILDALIGTMSPLIPAIIGGSMVKLLAMILNMTGVFGKDSSTLIILNVIGDGAFFFLPVMVAASAAIKFKTNMSLAIAIAGVLVHPTFIDLMAKAAQGQQVEFIGLPVTAVKYTYTVIPALFMTWLLSYIEKWIDRITPAVTKNFLKPMLIVLVSAPIAILLIGPLGIWIGSGISALVYAIHGYLGWLSVAIMGGLWPLLVMTGMHRVFTPTIIQTIAETGKEGMVMPSEIGANLSLGGSSLAVAWRTKNPELRQTALAAAASAIVAGISEPALYGVAVRLKRPLIAALISGFICGGVAGVAGLASHSMASPGLFTSVQFFDPANPMTIAWVFGVMILAVVLSFILTLLMGFEDIPVTEEAESEPAKSAPKTSQPGQEMPNHAAQG
>NZ_CP007044.2|WP_024912534.1|135355_136375_+|LacI-family-DNA-binding-transcriptional-regulator
MSTMQEVAKKAGVSKATVSRVLSGKGYVSEATKDQVYKAIEEAGYRPNLLARNLATNKSQCIGLVVTNTLYNGSYFSGLLSQAAQKLEDNGRQLILVDGKHSAEEEQAAIQFLLDLRCDAIIIYPRFLTIDVMDDIIEQYKQPIMVVNRRLRKHQSHCICCDHKGASFNATKYLIEQGHRDIAFITGSLDSPTAIERLSGYKEALNQYGITPQDSLILKGKWTPASGAAAIELLLSNQTTFSAVLASNDDMAIGAIKTLSQTGIAVPDSVSVIGFDNIPTAPYLHPALSSVKDPVSDMMNEVIDRLISMLDGGYLSKDNLFTSNLLIRESVSKGPFWGK
>NZ_CP007044.2|WP_024912533.1|136432_138658_-|hypothetical-protein
MDFFSKHGSGKRMTNRMFILGFVFSLAACDNSNASSVIESNNMASLNNNAEVISSVNDNKQQNQVAACSVDNKAWWPLPQGKNDTPPASFITRVNFQDDTPGLYTVADFTKDWGLTPGNSSGQAQGRLNIVADPDAPANKVLRVTYSATAGQDATGNPTPGIGGNSAMTFDAPLPKGNTALWLQYKVRFDERFTWVRGGKLPGLGGGGKAPSGCIDNSKFNGFTTRLMWREQGSMYNYLYYPTKVEHCGDYAALNTQFLPGQWYTITQYVQLGDPGQSNGQLIQFVDGVKVLELDNWNWRADNTVSISTIKMDTFFGGGTLDWAPQTDQYAYFDDFTVTTASPLGLVTTHKSREQQENGITCHPQPGYQAWSATQSYPAGSLVYAVDGNGEYHYYQARSDIAAGISPGEGVHTLLDIYDGVVISPVPVDLEQPWLEQTVAPWYGNGATPGASWTTGLANVGGSEEGEPPTEETDDGAIKWNLYTPLTNGGLMPNVNGAVSNSYGTANQFAVNGNLTPFSINPDNTLRYDNTGSTVTTAVRLCNTGSCDNAGKGLKASADSVTNDGYPKGFTWLACVKANEPGTKNALEIEVATGDFLLGPAYSSRVKTVIQKTSSATGVQLNSIDGSSSSVVQADTSQYHLYQVSIALDTYNTGSVNLFIDGKAAKVRAGPALPYSGVLNSVSLTGPGNYLSIGSGAATSTATSGSMAWFIWTKEALSPADIAGSLPENALAGSPCDLSAY

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Crispr_ID: NZ_CP007044_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007044_4

5100146-5100250

Orphan

Consensus_repeat	Method
CAATTTGCCGCTGAACAGATGTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007044_4

>merge|NZ_CP007044|4|5100146-5100250|CRISPRCasFinder
CAATTTGCCGCTGAACAGATGTTGATCTCCACCCTCGGCAACGATGCAAAGGTTTCAGCTACCGAAGAATCCACACCGGGTCAGTTTGCCGCTGAACAGATGTTG

>NZ_CP007044|4|4|5100146-5100250|CRISPRCasFinder
CAATTTGCCGCTGAACAGATGTTG	ATCTCCACCCTCGGCAACGATGCAAAGGTTTCAGCTACCGAAGAATCCACACCGGGT
CAGTTTGCCGCTGAACAGATGTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007044.2\|WP_024910438.1\|5097393_5098302_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP007044.2\|WP_024910429.1\|5106671_5107262_-\|tail-fiber-assembly-protein	unknown	unknown	gnl\|CDD\|367075
NZ_CP007044.2\|WP_024910434.1\|5102011_5102317_-\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|368449
NZ_CP007044.2\|WP_024910439.1\|5095942_5097382_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP007044.2\|WP_024910444.1\|5092509_5093280_+\|basic-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270342
NZ_CP007044.2\|WP_024910428.1\|5107261_5107975_-\|tail-fiber-protein	unknown	unknown	gnl\|CDD\|377845
NZ_CP007044.2\|WP_024910442.1\|5094136_5094859_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP007044.2\|WP_024910445.1\|5091802_5092123_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP007044.2\|WP_024910441.1\|5094908_5095226_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP007044.2\|WP_162149738.1\|5108632_5109814_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377414
NZ_CP007044.2\|WP_024910433.1\|5102306_5102687_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374892
NZ_CP007044.2\|WP_024910425.1\|5109813_5110167_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007044.2\|WP_024910430.1\|5105776_5106655_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007044.2\|WP_024910437.1\|5098319_5099750_-\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|182606
NZ_CP007044.2\|WP_045784920.1\|5093433_5094153_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP007044.2\|WP_024910435.1\|5101449_5102019_-\|N-acetylmuramidase-family-protein	unknown	unknown	gnl\|CDD\|378741
NZ_CP007044.2\|WP_024910431.1\|5104553_5105609_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|285585
NZ_CP007044.2\|WP_024910446.1\|5091097_5091799_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP007044.2\|WP_024910427.1\|5107967_5108636_-\|DUF2612-domain-containing-protein	unknown	unknown	gnl\|CDD\|371354
NZ_CP007044.2\|WP_024910440.1\|5095320_5095950_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661

Protein	Function_ID	Function_description	E-value
NZ_CP007044.2\|WP_024910438.1\|5097393_5098302_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP007044.2\|WP_024910429.1\|5106671_5107262_-\|tail-fiber-assembly-protein	gnl\|CDD\|367075	pfam02413, Caudo_TAP, Caudovirales tail fibre assembly protein, lambda gpK. This family contains bacterial and phage tail fibre assembly proteins. E.coli contains several members of this family although the function of these proteins is uncertain. Using the lambda phage members as examples, there are both gptfa and gpK tail proteins here. GpK forms part of the TTC or tail-tip complex that is located at the distal end of the tail. TTCs form the platform on which the tail-tube proteins self-assemble and are also the attachment point for fibers or receptor-binding proteins that mediate phage-adsorption to the surface of the host cell. TTC assembly starts with gpJ, which is also known as the central tail fibre and is involved in host-cell adsorption. It is the C-terminus of gpJ that interacts with the lamB receptor on host cells. A number of intermediates including gpK then interact with gpJ during tail morphogenesis.	5.81224e-39
NZ_CP007044.2\|WP_024910434.1\|5102011_5102317_-\|phage-holin-family-protein	gnl\|CDD\|368449	pfam05449, Phage_holin_3_7, Putative 3TM holin, Phage_holin_3. This is a family of putative proteobacterial phage three-transmembrane-domain holins.	1.0861e-27
NZ_CP007044.2\|WP_024910439.1\|5095942_5097382_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP007044.2\|WP_024910444.1\|5092509_5093280_+\|basic-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270342	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold. This group includes the periplasmic substrate-binding protein ArtJ of the ATP-binding cassette (ABC) transport system from the thermophilic bacterium Geobacillus stearothermophilus, which is specific for arginine, lysine, and histidine. ArtJ belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.1972e-96
NZ_CP007044.2\|WP_024910428.1\|5107261_5107975_-\|tail-fiber-protein	gnl\|CDD\|377845	pfam07484, Collar, Phage Tail Collar Domain. This region is occasionally found in conjunction with pfam03335. Most of the family appear to be phage tail proteins; however some appear to be involved in other processes. For instance a member from Rhizobium leguminosarum may be involved in plant-microbe interactions. A related protein MrpB is involved in the pathogenicity of Microcystis aeruginosa. The finding of this family in a structural component of the phage tail fibre baseplate suggests that its function is structural rather than enzymatic. Structural studies show this region consists of a helix and a loop and three beta-strands. This alignment does not catch the third strand as it is separated from the rest of the structure by around 100 residues. This strand is conserved in homologs but the intervening sequence is not. Much of the function of phage T4 appears to reside in this intervening region. In the tertiary structure of the phage baseplate this domain forms part of the 'collar'. The domain may bind SO4, however the residues accredited with this vary between the PDB file and the Swiss-Prot entry. The long unconserved region maybe due to domain swapping in and out of a loop or reflective of rapid evolution.	2.74347e-13
NZ_CP007044.2\|WP_024910442.1\|5094136_5094859_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	2.09411e-154
NZ_CP007044.2\|WP_024910445.1\|5091802_5092123_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	4.48006e-65
NZ_CP007044.2\|WP_024910441.1\|5094908_5095226_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	2.50672e-44
NZ_CP007044.2\|WP_162149738.1\|5108632_5109814_-\|hypothetical-protein	gnl\|CDD\|377414	pfam04865, Baseplate_J, Baseplate J-like protein. The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologs, which are thought to have been horizontally transferred.	2.68957e-08
NZ_CP007044.2\|WP_024910433.1\|5102306_5102687_-\|hypothetical-protein	gnl\|CDD\|374892	pfam16931, Phage_holin_8, Putative phage holin.	8.46052e-34
NZ_CP007044.2\|WP_024910437.1\|5098319_5099750_-\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|182606	PRK10637, cysG, siroheme synthase CysG.	0
NZ_CP007044.2\|WP_045784920.1\|5093433_5094153_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.15076e-75
NZ_CP007044.2\|WP_024910435.1\|5101449_5102019_-\|N-acetylmuramidase-family-protein	gnl\|CDD\|378741	pfam11860, Muraidase, N-acetylmuramidase. Endolysins are bacteriophage encoded proteins synthesized at the end of the lytic infection cycle. They degrade the peptidoglycan (PG) of the host bacterium to allow viral progeny release. This domain family is found in bacteria and viruses. It is also found associated with pfam01471. One of the family members is the modular Gp110 endolysin found in the Salmonella phage. This domain represents the catalytic region found in the C-terminal of Gp110. It has been demonstrated to have N-acetylmuramidase (lysozyme) activity cleaving the beta-(1,4) glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues in the sugar backbone of the PG. Furthermore, sequence alignments containing this domain show that the Gp110 E101 residue is conserved (suggesting that is is the catalytic residue), and followed by serine (a common feature in lysozymes). The structure of endolysins varies depending on their origin. In general, most of the endolysins from phages infecting Gram-positive bacteria have a modular structure consisting of one or two N-terminal enzymatic active domains (EADs) and a C-terminal cell wall binding domain (CBD) separated by a short linker. In silico analysis indicate that this endolysin has a modular structure harboring this EAD family at the C-terminus and a PG_binding_1 CBD at the N-terminus.	3.80232e-82
NZ_CP007044.2\|WP_024910431.1\|5104553_5105609_-\|hypothetical-protein	gnl\|CDD\|285585	pfam08400, phage_tail_N, Prophage tail fibre N-terminal. This domain is found at the N-terminus of prophage tail fibre proteins.	1.02694e-09
NZ_CP007044.2\|WP_024910446.1\|5091097_5091799_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.61088e-115
NZ_CP007044.2\|WP_024910427.1\|5107967_5108636_-\|DUF2612-domain-containing-protein	gnl\|CDD\|371354	pfam11041, DUF2612, Protein of unknown function (DUF2612). This is a phage protein family expressed from a range of Proteobacteria species. The function is not known.	1.31291e-74
NZ_CP007044.2\|WP_024910440.1\|5095320_5095950_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.3934e-145

>NZ_CP007044.2|WP_024910437.1|5098319_5099750_-|uroporphyrinogen-III-C-methyltransferase
MDYLPLFADLKQRPVLVVGGGEVAARKVSLLQRAGAEIRIVAQELSPEIEHLHLQGQVHWLAHSFAPQQLDEVFLVIAATDDSSLNAEVYAEADKRRVLANVVDDQPRCSFIFPSIIDRSPLVVAVSSSGQAPVLARMLREKLEALLPTSLGQMAEVAGRWRGQVKQQLSSLGARRRFWEKTFGGRFATLVATGQVVQAEQQLAQDLTAFAQGHAGKQGEIALVGAGPGDVGLLTLRGLQVMQQADVVLYDHLVSDETLDLVRRDAERICVGKRAGAHSVIQEETNRLLVELAQQGKRVVRLKGGDPFIFGRGGEELQVAAAAGIPFQVVPGVTAAAGATAYAGIPLTHRDHAQSVTFITGHCRPDGSGLDWADLARARQTLAIYMGTMKAADISRNLIVHGRDATTPVAVISRGTRPDQQVQTGTLQQLEQLAQQAPLPALLVIGEVVELHHQIAWFGQQPQAEGGSRPAVVNLA
>NZ_CP007044.2|WP_024910438.1|5097393_5098302_-|sulfate-adenylyltransferase-subunit-CysD
MDGKRLTHLRQLEAESIHIIREVAAEFSNPVMMYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKEYGFELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTELDIWQYIFLEKIDLVPLYLAKPRPVVERDGMLLMVDDDRIDLQPGEVISQRMVRFRTLGCWPLTGAVDSAAQTLPEIIEEMLVSTTSERQGRMIDRDQSGSMELKKRQGYF
>NZ_CP007044.2|WP_024910439.1|5095942_5097382_-|sulfate-adenylyltransferase-subunit-CysN
MNNVIAQQIAEQGGVESYLHAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSTLHTDSKRLGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIRHLVVAVNKMDLVGYQQAVFEQYKQDYLTFAEQLPNALDIKFVPLSALDGDNVATQSEQMPWYNGPTLLEVLETVDVVSEREAQPLRFPVQYVNRPNLDFRGYAGTLSAGVVRVGQRVKVLPSGIESTVTRIVTFDGDLQEAVPGEAITLVLQDEVDISRGDLLVDASETVQATQSALVDVVWMAEQALLPGQSYDIKVAGKKTRAQVGSIRYQVDVNSLAQHQAEVLPLNGIGLVELTFDEPLVLDSYQSNHDTGGLIFIDRLTNVTVGAGLIREALHNSDQEAVEDYSAFELELNALVRKHFPHWGARDLLRGKSRG
>NZ_CP007044.2|WP_024910440.1|5095320_5095950_-|adenylyl-sulfate-kinase
MAETQVRATGPNDENVVWHPHAITRAEREIRNAHQGVVLWFTGLSGSGKSTVAGALEQVLHRLGISTYLLDGDNVRHGLCQDLGFSDDDRRENIRRVGEVAKLMVDAGLVVLTAFISPHRSERQMVREMLDDGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPVQPDIHLNGEQLVTNLTTQLLDVLRSRAMIKS
>NZ_CP007044.2|WP_024910441.1|5094908_5095226_-|DUF3561-family-protein
MQNITPTLADAQQAPEEPTYFFLGGVSGFAFYWLAFAVPFLAYGSNTLFFLLYTWPLFLALMPVSVLIGITVSMWLRSKLFLSLGITGAAVIGLFWLVFQWLSGW
>NZ_CP007044.2|WP_024910442.1|5094136_5094859_+|amino-acid-ABC-transporter-ATP-binding-protein
MIRVHNLQKQFGASHVLCGISCDIAPNEVVCIIGPSGSGKSTFLRCINALETLSGGEIDVNGFAIHRQQTNLNKMRESVGMVFQRFNLFPHMTVLENIIMAPIAVKKLPRSEAIVRAEVLLNKVGLLDKIDAYPSSLSGGQQQRVAIARALAMEPKIMLFDEPTSALDPELVGEVLAVMKSLAHEGMTMVVVTHEMGFAREVADRVLFIDQGIIQEAGTPQQIFNHPTNPRTQAFLSKVL
>NZ_CP007044.2|WP_045784920.1|5093433_5094153_+|amino-acid-ABC-transporter-permease
MEGALMTIKCTIICVLLGTTWGLILGLGRLAQAPHGIWKPLLHYGIQWPVRIYISAFRGTPLFVQIMVVHFALVPLFINPRDGLLVTSGLMSTDFARALRSDYGAFLSCVVAITLNAGAYVSEIFRAGIQSIDRGQMEASRSLGMSYGKTMRKVILPQAFRRMLPPLGNNAIAIVKDSSLASAIGLADLAYAARTVSGAYATYWEPYLTISLVYWVITFLLSLMVQHMEKRFGKSDSRT
>NZ_CP007044.2|WP_024910444.1|5092509_5093280_+|basic-amino-acid-ABC-transporter-substrate-binding-protein
MLKRLVLIGACLAATLSTASFAAEPTYVVGSGGTYRPFEFENSNKELEGFDIDVIKAIAKAEGFQVKLVNTPWEGIFATLNSGDRDIIISGITITDKRQQMVDFSAPYFPAEQAIVVPKDSTVDSIAALKALKVGVVNSSTGDIVVSDTLGKNSTAIKRFDNTPLMLQELYEDGIGAAVGDVGVAKFYIKTHPEKEFKLVSDAKFERQYFGIAVAKGNDELRNKINAGLKKIIADGTYAKIYQTWFDSNVPTLPAQ
>NZ_CP007044.2|WP_024910445.1|5091802_5092123_-|cell-division-protein-FtsB
MGKLTLLLLALLGWLQYSLWLGKNGIHDYVRVNEDVAAQQSNNAKLKARNDQLFAEIDDLNGGQEAIEERARNELGMIRPGETFYRLVPDQSRRSAASSTQNNVQK
>NZ_CP007044.2|WP_024910446.1|5091097_5091799_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MNHSASSLPQVIAVLPAAGIGSRMQTDCPKQYLTIGHQTLLEHAIQVLLRHPRISQVIVAISPDDHQFQMLPIAQDPRVRTTLGGQQRADSVMAGLQLANDAEWVLVHDAARPCLHADDLERLLAITAHSKVGGILAAPVRDTMKRAEVGQNAISHTVERQDLWHALTPQLFPLELLKHCLQRALDDGVMVTDEASALEHCGYHPLLVAGRADNIKVTRPEDLALAAFYLTQL
>NZ_CP007044.2|WP_024910435.1|5101449_5102019_-|N-acetylmuramidase-family-protein
MSNLIFQDYQRVVELLGVPGAVVQAVAEVESAGAGMLPDGRPKILFERHVFRRLLLEKGVKVDGLPADLVNRVAGGYSSGAAEHDRLARAVEIERECALQSCSWGAFQIMGYHWNLLKYPNLQAFINAMYNSEADQLEAFVRFINANSALVKALRALDWAAFAKGYNGAGYASNNYDKKMAAAFSRAGG
>NZ_CP007044.2|WP_024910434.1|5102011_5102317_-|phage-holin-family-protein
MNLDTLCLVINGIACGLISLRLLAFRRGNNEHDYGTAIFAFCIIAASGTVAIRLALGVYDEVDPAEALLNVALCIGVFAVKGNIKQLVHFSGIKKSGVDHE
>NZ_CP007044.2|WP_024910433.1|5102306_5102687_-|hypothetical-protein
MSEPVSSAAMATAIVTGATIAGLLSGPEAADVVIGAFIGSVIFVISAKDYPFVTRTVLFLVSFVIGVVSSEFFANALSTTLPGELAVTKLIGAIVSSAVSVRLLMALTKRAADPDLLKKGGHNNEP
>NZ_CP007044.2|WP_024910431.1|5104553_5105609_-|hypothetical-protein
MIKLSGSYLSPEGIPIPYANLVITSRHNTRQTFLQIAASVTTGAGGEYQLELYPGEYVVTVVYKNGQRVVLGTITLLNDSPSGTLNDYLVDSAPELTGPIVLAEIRAAAKQAQKSEDNAKSSDLAAAQSVHNAANSASAAANSELSAGKSRDAAASSASAAALSAAAALKSEISARDAAQLAADTVANNAAMIAQVSQQVEAVSDAAVVTSAQLSASQSQQRTINGTVNGRLDALDNQSVVLANAIDSEAKSRTIADSELAQSISALQVDVNAADAALGNGITAISQALANADTIQTTLTSNIDDHLECTASTAVEAWIANANILNTLRQLTSSLSTINARLTAFESSNIK
>NZ_CP007044.2|WP_024910430.1|5105776_5106655_-|hypothetical-protein
MAKNEFLPFGIGNGANVLNPTDWLALSSRNAGFATGIAKSKEMNTALRQSSVITNVVAQFIADNSGKDVLDNGDLSTLQKNLSAALLNSVSGRLLNTQTFTASGTYIPTTGTKRIRAKVWGAGGGGQGMSSTSINSGAVGGGGGAYAESLIDVTGVTSISVTVGTGGTATVAGNNSNGGNGGKSLFGKHITCEGGLGGNQGSIAPVQATGGTIINISGQVAQGGVILSGGIIVGGVGGGSFGSASANPHISIPSDNGQFPGGGGAMGTYISATQLQPSGMGANGYVIVEEYS
>NZ_CP007044.2|WP_024910429.1|5106671_5107262_-|tail-fiber-assembly-protein
MNQAILDGSYIATISGVVTVFNYDGTTGEYLNSCEEFLSEGVGLPANACIDAPPKCKAGYIARRVGDTWETVADHRGKTLYSTETGQLLTISELGGLPVNSTILAPNTPYDKWNDKEWVTDKTAQHDADITAATHQRTELIAVANAAIMLLADAVDLDMATEAEVVLLNNWRRYRVQLNRVEMNAAPDIIWPELPV
>NZ_CP007044.2|WP_024910428.1|5107261_5107975_-|tail-fiber-protein
MAKNDFLPFGIGAGANVLTPADWSALPARSKGFASGAAKSKELNTAWRQSSVISSVVAQFIADSSGKDVLDNGDTTALLATLKNLLTPTGVPLPWPTATPPTGWLKCNGATFSKTLYPNLALAYPSGILPDLRGEFIRGWDDGRGVDMGRTLLSAQSHAMQRMTGSTTPIHAQTLGTDFSGDGVLKLIKTNMTIPSNSGGLNTGGPGILFDNAVAGINTSTENRPRNIAFNYIVRAA
>NZ_CP007044.2|WP_024910427.1|5107967_5108636_-|DUF2612-domain-containing-protein
MNTYQQLITAYHADKPKYLDTIGLSSAPFTAIQSTLGDFINKFDLDRAVDSQLDALGLWIGIGRVVRSTINGIYFSFDTTGLGYDQGSWQGVFDDMGFTALDDEAYRTILRAKILANNWDGTMATLSNIYQSVFPDDKTQIFAVDNLDMTMSVYLSGAPLPAVLQSIIAFGYLDVKPGGVRIADYTMVSEPGPLFGFDADNKYLSGFDKGMWGLDLKEITNG
>NZ_CP007044.2|WP_162149738.1|5108632_5109814_-|hypothetical-protein
MLNLDTLGLSASVDAQGISAPDYQTVLSTLTAFFRQIYGEDAYLEPDSKDGQWIAVIALAIHDANNMAIAVFNSFSPATAQGRALENNVKINGITKNAASQSTADVVLSGQVGTQITNGVVRDTNGISWSLPSNVVIGSSGQVTVTATCQVIGAVIALPGDLNVIGSPTRGWQAVTNPQAASPGQPVESDAELRIRQSRSVSLPSRTVLEGIIGAIATLPNVERYRGYENDTSITDSNGIPSHSIAIVVDGGDDRQIANTIATKKTPGTGSYGTTVVPVTDQYGITRSVSFFRKTSVPIYVRVTLKPLVGYTTNIAEAIKSAIADYINGVAIGDPVLLHRLFVPANLNGEGRAYDLADLQIGKSASALAAANINVTFNQAVTCAAANVTVVTT
>NZ_CP007044.2|WP_024910425.1|5109813_5110167_-|hypothetical-protein
MRYRREDSSGDYIFGAGDNTFMVNTPEAVAQAVKTRFELWQGEWFLDTTAGTPYKTDILGKHKSLVYQMAVRERILGTRGVSEITDFQVQVNPQTRRVIFTSTINTLYGTTTINSEA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP007044_1	1.3\|73770\|33\|NZ_CP007044\|PILER-CR	73770-73802	33	MF495477	Aeromonas salmonicida plasmid pS28-3, complete sequence	35163-35195	1	0.97
NZ_CP007044_1	1.3\|73770\|33\|NZ_CP007044\|PILER-CR	73770-73802	33	KJ850907	Uncultured bacterium plasmid pSFA231, complete sequence	7909-7941	1	0.97
NZ_CP007044_1	1.18\|73767\|33\|NZ_CP007044\|CRISPRCasFinder,CRT	73767-73799	33	MF495477	Aeromonas salmonicida plasmid pS28-3, complete sequence	35163-35195	1	0.97
NZ_CP007044_1	1.18\|73767\|33\|NZ_CP007044\|CRISPRCasFinder,CRT	73767-73799	33	KJ850907	Uncultured bacterium plasmid pSFA231, complete sequence	7909-7941	1	0.97
NZ_CP007044_1	1.3\|73770\|33\|NZ_CP007044\|PILER-CR	73770-73802	33	NZ_MN366357	Bacterium plasmid pALTS28, complete sequence	8427-8459	2	0.939
NZ_CP007044_1	1.3\|73770\|33\|NZ_CP007044\|PILER-CR	73770-73802	33	NZ_CP020047	Thiomonas intermedia strain ATCC 15466 plasmid pXI1, complete sequence	5151-5183	2	0.939
NZ_CP007044_1	1.3\|73770\|33\|NZ_CP007044\|PILER-CR	73770-73802	33	AJ297913	Uncultured bacterium plasmid pIPO2T, complete sequence	34080-34112	2	0.939
NZ_CP007044_1	1.3\|73770\|33\|NZ_CP007044\|PILER-CR	73770-73802	33	NC_010332	Collimonas fungivorans plasmid pTer331, complete sequence	34097-34129	2	0.939
NZ_CP007044_1	1.18\|73767\|33\|NZ_CP007044\|CRISPRCasFinder,CRT	73767-73799	33	NZ_MN366357	Bacterium plasmid pALTS28, complete sequence	8427-8459	2	0.939
NZ_CP007044_1	1.18\|73767\|33\|NZ_CP007044\|CRISPRCasFinder,CRT	73767-73799	33	NZ_CP020047	Thiomonas intermedia strain ATCC 15466 plasmid pXI1, complete sequence	5151-5183	2	0.939
NZ_CP007044_1	1.18\|73767\|33\|NZ_CP007044\|CRISPRCasFinder,CRT	73767-73799	33	AJ297913	Uncultured bacterium plasmid pIPO2T, complete sequence	34080-34112	2	0.939
NZ_CP007044_1	1.18\|73767\|33\|NZ_CP007044\|CRISPRCasFinder,CRT	73767-73799	33	NC_010332	Collimonas fungivorans plasmid pTer331, complete sequence	34097-34129	2	0.939
NZ_CP007044_1	1.1\|73647\|32\|NZ_CP007044\|PILER-CR,CRISPRCasFinder,CRT	73647-73678	32	NC_009930	Acaryochloris marina MBIC11017 plasmid pREB5, complete sequence	137447-137478	7	0.781
NZ_CP007044_1	1.8\|74071\|32\|NZ_CP007044\|PILER-CR	74071-74102	32	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	173525-173556	7	0.781
NZ_CP007044_1	1.8\|74071\|32\|NZ_CP007044\|PILER-CR	74071-74102	32	NC_010510	Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence	279914-279945	7	0.781
NZ_CP007044_1	1.14\|74431\|32\|NZ_CP007044\|PILER-CR	74431-74462	32	NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	609902-609933	7	0.781
NZ_CP007044_1	1.15\|74491\|32\|NZ_CP007044\|PILER-CR	74491-74522	32	NC_025466	Shewanella sp. phage 3/49, complete genome	34127-34158	7	0.781
NZ_CP007044_1	1.23\|74068\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74068-74099	32	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	173525-173556	7	0.781
NZ_CP007044_1	1.23\|74068\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74068-74099	32	NC_010510	Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence	279914-279945	7	0.781
NZ_CP007044_1	1.29\|74428\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74428-74459	32	NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	609902-609933	7	0.781
NZ_CP007044_1	1.30\|74488\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74488-74519	32	NC_025466	Shewanella sp. phage 3/49, complete genome	34127-34158	7	0.781
NZ_CP007044_2	2.1\|87381\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	87381-87412	32	KX119202	Helicobacter phage Pt1293U, complete genome	25367-25398	7	0.781
NZ_CP007044_2	2.4\|87561\|32\|NZ_CP007044\|CRISPRCasFinder,CRT,PILER-CR	87561-87592	32	NZ_CP025114	Bradyrhizobium sp. SK17 strain CBNU plasmid unnamed, complete sequence	196135-196166	7	0.781
NZ_CP007044_2	2.4\|87561\|32\|NZ_CP007044\|CRISPRCasFinder,CRT,PILER-CR	87561-87592	32	NZ_CP044544	Bradyrhizobium betae strain PL7HG1 plasmid pBbPL7HG1, complete sequence	182401-182432	7	0.781
NZ_CP007044_2	2.5\|87621\|32\|NZ_CP007044\|CRISPRCasFinder,CRT,PILER-CR	87621-87652	32	MN693893	Marine virus AFVG_250M400, complete genome	42923-42954	7	0.781
NZ_CP007044_2	2.5\|87621\|32\|NZ_CP007044\|CRISPRCasFinder,CRT,PILER-CR	87621-87652	32	MN694280	Marine virus AFVG_250M397, complete genome	43078-43109	7	0.781
NZ_CP007044_2	2.5\|87621\|32\|NZ_CP007044\|CRISPRCasFinder,CRT,PILER-CR	87621-87652	32	MN694299	Marine virus AFVG_250M399, complete genome	7535-7566	7	0.781
NZ_CP007044_2	2.5\|87621\|32\|NZ_CP007044\|CRISPRCasFinder,CRT,PILER-CR	87621-87652	32	MN694718	Marine virus AFVG_250M398, complete genome	7531-7562	7	0.781
NZ_CP007044_3	3.9\|123131\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	123131-123162	32	KY554772	Lactococcus phage AM5, complete genome	36053-36084	7	0.781
NZ_CP007044_3	3.9\|123131\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	123131-123162	32	KY554777	Lactococcus phage LW81, complete genome	38268-38299	7	0.781
NZ_CP007044_3	3.9\|123131\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	123131-123162	32	NC_049856	Lactococcus phage AM4, complete genome	18098-18129	7	0.781
NZ_CP007044_3	3.24\|123133\|32\|NZ_CP007044\|PILER-CR	123133-123164	32	KY554772	Lactococcus phage AM5, complete genome	36053-36084	7	0.781
NZ_CP007044_3	3.24\|123133\|32\|NZ_CP007044\|PILER-CR	123133-123164	32	KY554777	Lactococcus phage LW81, complete genome	38268-38299	7	0.781
NZ_CP007044_3	3.24\|123133\|32\|NZ_CP007044\|PILER-CR	123133-123164	32	NC_049856	Lactococcus phage AM4, complete genome	18098-18129	7	0.781
NZ_CP007044_1	1.12\|74311\|32\|NZ_CP007044\|PILER-CR	74311-74342	32	KT895374	Bacillus phage vB_BpuM-BpSp, complete genome	34718-34749	8	0.75
NZ_CP007044_1	1.12\|74311\|32\|NZ_CP007044\|PILER-CR	74311-74342	32	MT623546	Acinetobacter phage Ab_121, complete genome	52216-52247	8	0.75
NZ_CP007044_1	1.17\|73707\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	73707-73738	32	AJ783769	Sulfolobus tengchongensis spindle-shaped virus STSV1 complete genome	38305-38336	8	0.75
NZ_CP007044_1	1.27\|74308\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74308-74339	32	KT895374	Bacillus phage vB_BpuM-BpSp, complete genome	34718-34749	8	0.75
NZ_CP007044_1	1.27\|74308\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74308-74339	32	MT623546	Acinetobacter phage Ab_121, complete genome	52216-52247	8	0.75
NZ_CP007044_2	2.4\|87561\|32\|NZ_CP007044\|CRISPRCasFinder,CRT,PILER-CR	87561-87592	32	NC_015162	Deinococcus proteolyticus MRP plasmid pDEIPR02, complete sequence	181315-181346	8	0.75
NZ_CP007044_3	3.9\|123131\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	123131-123162	32	KY554775	Lactococcus phage AM11, complete genome	33310-33341	8	0.75
NZ_CP007044_3	3.9\|123131\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	123131-123162	32	KY554773	Lactococcus phage AM8, complete genome	33309-33340	8	0.75
NZ_CP007044_3	3.9\|123131\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	123131-123162	32	KY554768	Lactococcus phage AM1, complete genome	33309-33340	8	0.75
NZ_CP007044_3	3.9\|123131\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	123131-123162	32	KY554769	Lactococcus phage AM2, complete genome	33309-33340	8	0.75
NZ_CP007044_3	3.9\|123131\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	123131-123162	32	KY554770	Lactococcus phage AM3, complete genome	33911-33942	8	0.75
NZ_CP007044_3	3.9\|123131\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	123131-123162	32	HM029250	Lactococcus phage 949, complete genome	31852-31883	8	0.75
NZ_CP007044_3	3.9\|123131\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	123131-123162	32	KY554776	Lactococcus phage AM12, complete genome	33291-33322	8	0.75
NZ_CP007044_3	3.9\|123131\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	123131-123162	32	KY554774	Lactococcus phage AM9, complete genome	33308-33339	8	0.75
NZ_CP007044_3	3.9\|123131\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	123131-123162	32	NC_049857	Lactococcus phage P1048, complete genome	27319-27350	8	0.75
NZ_CP007044_3	3.11\|123251\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	123251-123282	32	KM236247	Bacillus phage Pascal, complete genome	12995-13026	8	0.75
NZ_CP007044_3	3.24\|123133\|32\|NZ_CP007044\|PILER-CR	123133-123164	32	KY554775	Lactococcus phage AM11, complete genome	33310-33341	8	0.75
NZ_CP007044_3	3.24\|123133\|32\|NZ_CP007044\|PILER-CR	123133-123164	32	KY554773	Lactococcus phage AM8, complete genome	33309-33340	8	0.75
NZ_CP007044_3	3.24\|123133\|32\|NZ_CP007044\|PILER-CR	123133-123164	32	KY554768	Lactococcus phage AM1, complete genome	33309-33340	8	0.75
NZ_CP007044_3	3.24\|123133\|32\|NZ_CP007044\|PILER-CR	123133-123164	32	KY554769	Lactococcus phage AM2, complete genome	33309-33340	8	0.75
NZ_CP007044_3	3.24\|123133\|32\|NZ_CP007044\|PILER-CR	123133-123164	32	KY554770	Lactococcus phage AM3, complete genome	33911-33942	8	0.75
NZ_CP007044_3	3.24\|123133\|32\|NZ_CP007044\|PILER-CR	123133-123164	32	HM029250	Lactococcus phage 949, complete genome	31852-31883	8	0.75
NZ_CP007044_3	3.24\|123133\|32\|NZ_CP007044\|PILER-CR	123133-123164	32	KY554776	Lactococcus phage AM12, complete genome	33291-33322	8	0.75
NZ_CP007044_3	3.24\|123133\|32\|NZ_CP007044\|PILER-CR	123133-123164	32	KY554774	Lactococcus phage AM9, complete genome	33308-33339	8	0.75
NZ_CP007044_3	3.24\|123133\|32\|NZ_CP007044\|PILER-CR	123133-123164	32	NC_049857	Lactococcus phage P1048, complete genome	27319-27350	8	0.75
NZ_CP007044_3	3.26\|123253\|32\|NZ_CP007044\|PILER-CR	123253-123284	32	KM236247	Bacillus phage Pascal, complete genome	12995-13026	8	0.75
NZ_CP007044_1	1.8\|74071\|32\|NZ_CP007044\|PILER-CR	74071-74102	32	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	1103487-1103518	9	0.719
NZ_CP007044_1	1.8\|74071\|32\|NZ_CP007044\|PILER-CR	74071-74102	32	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1055556-1055587	9	0.719
NZ_CP007044_1	1.8\|74071\|32\|NZ_CP007044\|PILER-CR	74071-74102	32	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	961309-961340	9	0.719
NZ_CP007044_1	1.8\|74071\|32\|NZ_CP007044\|PILER-CR	74071-74102	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1024522-1024553	9	0.719
NZ_CP007044_1	1.8\|74071\|32\|NZ_CP007044\|PILER-CR	74071-74102	32	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	960406-960437	9	0.719
NZ_CP007044_1	1.8\|74071\|32\|NZ_CP007044\|PILER-CR	74071-74102	32	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	961301-961332	9	0.719
NZ_CP007044_1	1.8\|74071\|32\|NZ_CP007044\|PILER-CR	74071-74102	32	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	960657-960688	9	0.719
NZ_CP007044_1	1.8\|74071\|32\|NZ_CP007044\|PILER-CR	74071-74102	32	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	961292-961323	9	0.719
NZ_CP007044_1	1.8\|74071\|32\|NZ_CP007044\|PILER-CR	74071-74102	32	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1055652-1055683	9	0.719
NZ_CP007044_1	1.8\|74071\|32\|NZ_CP007044\|PILER-CR	74071-74102	32	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1055647-1055678	9	0.719
NZ_CP007044_1	1.8\|74071\|32\|NZ_CP007044\|PILER-CR	74071-74102	32	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1055631-1055662	9	0.719
NZ_CP007044_1	1.15\|74491\|32\|NZ_CP007044\|PILER-CR	74491-74522	32	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	1706436-1706467	9	0.719
NZ_CP007044_1	1.15\|74491\|32\|NZ_CP007044\|PILER-CR	74491-74522	32	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	1711104-1711135	9	0.719
NZ_CP007044_1	1.23\|74068\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74068-74099	32	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	1103487-1103518	9	0.719
NZ_CP007044_1	1.23\|74068\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74068-74099	32	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1055556-1055587	9	0.719
NZ_CP007044_1	1.23\|74068\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74068-74099	32	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	961309-961340	9	0.719
NZ_CP007044_1	1.23\|74068\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74068-74099	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1024522-1024553	9	0.719
NZ_CP007044_1	1.23\|74068\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74068-74099	32	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	960406-960437	9	0.719
NZ_CP007044_1	1.23\|74068\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74068-74099	32	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	961301-961332	9	0.719
NZ_CP007044_1	1.23\|74068\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74068-74099	32	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	960657-960688	9	0.719
NZ_CP007044_1	1.23\|74068\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74068-74099	32	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	961292-961323	9	0.719
NZ_CP007044_1	1.23\|74068\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74068-74099	32	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1055652-1055683	9	0.719
NZ_CP007044_1	1.23\|74068\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74068-74099	32	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1055647-1055678	9	0.719
NZ_CP007044_1	1.23\|74068\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74068-74099	32	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1055631-1055662	9	0.719
NZ_CP007044_1	1.30\|74488\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74488-74519	32	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	1706436-1706467	9	0.719
NZ_CP007044_1	1.30\|74488\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74488-74519	32	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	1711104-1711135	9	0.719
NZ_CP007044_2	2.2\|87441\|32\|NZ_CP007044\|CRISPRCasFinder,CRT,PILER-CR	87441-87472	32	MN508356	Acinetobacter phage VB_ApiP_XC38, complete genome	63077-63108	9	0.719
NZ_CP007044_3	3.2\|122712\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	122712-122743	32	NZ_CP036405	Komagataeibacter saccharivorans strain JH1 plasmid p221732, complete sequence	121055-121086	9	0.719
NZ_CP007044_3	3.2\|122712\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	122712-122743	32	NZ_CP023037	Komagataeibacter saccharivorans strain CV1 plasmid unnamed1, complete sequence	91330-91361	9	0.719
NZ_CP007044_3	3.3\|122772\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	122772-122803	32	NC_021492	Enterobacter sp. R4-368 plasmid pENT01, complete sequence	101170-101201	9	0.719
NZ_CP007044_3	3.4\|122832\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	122832-122863	32	NZ_CP015221	Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence	105410-105441	9	0.719
NZ_CP007044_3	3.4\|122832\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	122832-122863	32	NZ_CP016621	Microvirga ossetica strain V5/3m plasmid unnamed5, complete sequence	37126-37157	9	0.719
NZ_CP007044_3	3.5\|122892\|31\|NZ_CP007044\|CRISPRCasFinder,CRT	122892-122922	31	NZ_CP039697	Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence	58852-58882	9	0.71
NZ_CP007044_3	3.6\|122951\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	122951-122982	32	AY526908	Bordetella phage BMP-1, complete genome	35231-35262	9	0.719
NZ_CP007044_3	3.6\|122951\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	122951-122982	32	NC_005357	Bordetella phage BPP-1, complete genome	35061-35092	9	0.719
NZ_CP007044_3	3.6\|122951\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	122951-122982	32	AY526909	Bordetella phage BIP-1, complete genome	35206-35237	9	0.719
NZ_CP007044_3	3.6\|122951\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	122951-122982	32	MK929790	Caulobacter phage RW, complete genome	23157-23188	9	0.719
NZ_CP007044_3	3.7\|123011\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	123011-123042	32	NC_019789	Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence	345403-345434	9	0.719
NZ_CP007044_3	3.11\|123251\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	123251-123282	32	NC_014838	Pantoea sp. At-9b plasmid pPAT9B01, complete sequence	595620-595651	9	0.719
NZ_CP007044_3	3.12\|123311\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	123311-123342	32	NZ_CP045959	Salmonella enterica subsp. enterica serovar Birkenhead strain AUSMDU00010532 plasmid pAUSMDU00010532_01, complete sequence	262976-263007	9	0.719
NZ_CP007044_3	3.17\|122714\|32\|NZ_CP007044\|PILER-CR	122714-122745	32	NZ_CP036405	Komagataeibacter saccharivorans strain JH1 plasmid p221732, complete sequence	121055-121086	9	0.719
NZ_CP007044_3	3.17\|122714\|32\|NZ_CP007044\|PILER-CR	122714-122745	32	NZ_CP023037	Komagataeibacter saccharivorans strain CV1 plasmid unnamed1, complete sequence	91330-91361	9	0.719
NZ_CP007044_3	3.18\|122774\|32\|NZ_CP007044\|PILER-CR	122774-122805	32	NC_021492	Enterobacter sp. R4-368 plasmid pENT01, complete sequence	101170-101201	9	0.719
NZ_CP007044_3	3.19\|122834\|32\|NZ_CP007044\|PILER-CR	122834-122865	32	NZ_CP015221	Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence	105410-105441	9	0.719
NZ_CP007044_3	3.19\|122834\|32\|NZ_CP007044\|PILER-CR	122834-122865	32	NZ_CP016621	Microvirga ossetica strain V5/3m plasmid unnamed5, complete sequence	37126-37157	9	0.719
NZ_CP007044_3	3.20\|122894\|31\|NZ_CP007044\|PILER-CR	122894-122924	31	NZ_CP039697	Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence	58852-58882	9	0.71
NZ_CP007044_3	3.21\|122953\|32\|NZ_CP007044\|PILER-CR	122953-122984	32	AY526908	Bordetella phage BMP-1, complete genome	35231-35262	9	0.719
NZ_CP007044_3	3.21\|122953\|32\|NZ_CP007044\|PILER-CR	122953-122984	32	NC_005357	Bordetella phage BPP-1, complete genome	35061-35092	9	0.719
NZ_CP007044_3	3.21\|122953\|32\|NZ_CP007044\|PILER-CR	122953-122984	32	AY526909	Bordetella phage BIP-1, complete genome	35206-35237	9	0.719
NZ_CP007044_3	3.21\|122953\|32\|NZ_CP007044\|PILER-CR	122953-122984	32	MK929790	Caulobacter phage RW, complete genome	23157-23188	9	0.719
NZ_CP007044_3	3.22\|123013\|32\|NZ_CP007044\|PILER-CR	123013-123044	32	NC_019789	Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence	345403-345434	9	0.719
NZ_CP007044_3	3.26\|123253\|32\|NZ_CP007044\|PILER-CR	123253-123284	32	NC_014838	Pantoea sp. At-9b plasmid pPAT9B01, complete sequence	595620-595651	9	0.719
NZ_CP007044_3	3.27\|123313\|32\|NZ_CP007044\|PILER-CR	123313-123344	32	NZ_CP045959	Salmonella enterica subsp. enterica serovar Birkenhead strain AUSMDU00010532 plasmid pAUSMDU00010532_01, complete sequence	262976-263007	9	0.719
NZ_CP007044_1	1.8\|74071\|32\|NZ_CP007044\|PILER-CR	74071-74102	32	NC_047911	Faecalibacterium phage FP_Lagaffe, complete genome	27997-28028	10	0.688
NZ_CP007044_1	1.8\|74071\|32\|NZ_CP007044\|PILER-CR	74071-74102	32	MK977705	Gordonia Phage Mollymur, complete genome	80920-80951	10	0.688
NZ_CP007044_1	1.11\|74251\|32\|NZ_CP007044\|PILER-CR	74251-74282	32	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	132021-132052	10	0.688
NZ_CP007044_1	1.16\|74551\|32\|NZ_CP007044\|PILER-CR	74551-74582	32	MN693792	Marine virus AFVG_250M943, complete genome	25711-25742	10	0.688
NZ_CP007044_1	1.16\|74551\|32\|NZ_CP007044\|PILER-CR	74551-74582	32	MN694119	Marine virus AFVG_250M974, complete genome	25168-25199	10	0.688
NZ_CP007044_1	1.16\|74551\|32\|NZ_CP007044\|PILER-CR	74551-74582	32	MN694234	Marine virus AFVG_250M972, complete genome	17373-17404	10	0.688
NZ_CP007044_1	1.16\|74551\|32\|NZ_CP007044\|PILER-CR	74551-74582	32	MN692978	Marine virus AFVG_117M13, complete genome	16897-16928	10	0.688
NZ_CP007044_1	1.16\|74551\|32\|NZ_CP007044\|PILER-CR	74551-74582	32	MN694043	Marine virus AFVG_250M973, complete genome	21862-21893	10	0.688
NZ_CP007044_1	1.23\|74068\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74068-74099	32	NC_047911	Faecalibacterium phage FP_Lagaffe, complete genome	27997-28028	10	0.688
NZ_CP007044_1	1.23\|74068\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74068-74099	32	MK977705	Gordonia Phage Mollymur, complete genome	80920-80951	10	0.688
NZ_CP007044_1	1.26\|74248\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74248-74279	32	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	132021-132052	10	0.688
NZ_CP007044_1	1.31\|74548\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74548-74579	32	MN693792	Marine virus AFVG_250M943, complete genome	25711-25742	10	0.688
NZ_CP007044_1	1.31\|74548\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74548-74579	32	MN694119	Marine virus AFVG_250M974, complete genome	25168-25199	10	0.688
NZ_CP007044_1	1.31\|74548\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74548-74579	32	MN694234	Marine virus AFVG_250M972, complete genome	17373-17404	10	0.688
NZ_CP007044_1	1.31\|74548\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74548-74579	32	MN692978	Marine virus AFVG_117M13, complete genome	16897-16928	10	0.688
NZ_CP007044_1	1.31\|74548\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74548-74579	32	MN694043	Marine virus AFVG_250M973, complete genome	21862-21893	10	0.688
NZ_CP007044_2	2.4\|87561\|32\|NZ_CP007044\|CRISPRCasFinder,CRT,PILER-CR	87561-87592	32	NC_031050	Enterobacteria phage vB_EcoS_NBD2, complete genome	40601-40632	10	0.688
NZ_CP007044_1	1.8\|74071\|32\|NZ_CP007044\|PILER-CR	74071-74102	32	JQ680370	Unidentified phage clone 2204_scaffold812 genomic sequence	20569-20600	11	0.656
NZ_CP007044_1	1.23\|74068\|32\|NZ_CP007044\|CRISPRCasFinder,CRT	74068-74099	32	JQ680370	Unidentified phage clone 2204_scaffold812 genomic sequence	20569-20600	11	0.656
NZ_CP007044_2	2.7\|87741\|32\|NZ_CP007044\|CRISPRCasFinder,CRT,PILER-CR	87741-87772	32	MN694606	Marine virus AFVG_250M830, complete genome	21423-21454	11	0.656

1. spacer 1.3|73770|33|NZ_CP007044|PILER-CR matches to MF495477 (Aeromonas salmonicida plasmid pS28-3, complete sequence) position: , mismatch: 1, identity: 0.97

gtccatcgccctgtcaacagggaaccgcgtagc	CRISPR spacer
gtccatcgccctgtcaccagggaaccgcgtagc	Protospacer
**************** ****************

2. spacer 1.3|73770|33|NZ_CP007044|PILER-CR matches to KJ850907 (Uncultured bacterium plasmid pSFA231, complete sequence) position: , mismatch: 1, identity: 0.97

gtccatcgccctgtcaacagggaaccgcgtagc	CRISPR spacer
gtccatcgccctgtcaccagggaaccgcgtagc	Protospacer
**************** ****************

3. spacer 1.18|73767|33|NZ_CP007044|CRISPRCasFinder,CRT matches to MF495477 (Aeromonas salmonicida plasmid pS28-3, complete sequence) position: , mismatch: 1, identity: 0.97

gtccatcgccctgtcaacagggaaccgcgtagc	CRISPR spacer
gtccatcgccctgtcaccagggaaccgcgtagc	Protospacer
**************** ****************

4. spacer 1.18|73767|33|NZ_CP007044|CRISPRCasFinder,CRT matches to KJ850907 (Uncultured bacterium plasmid pSFA231, complete sequence) position: , mismatch: 1, identity: 0.97

gtccatcgccctgtcaacagggaaccgcgtagc	CRISPR spacer
gtccatcgccctgtcaccagggaaccgcgtagc	Protospacer
**************** ****************

5. spacer 1.3|73770|33|NZ_CP007044|PILER-CR matches to NZ_MN366357 (Bacterium plasmid pALTS28, complete sequence) position: , mismatch: 2, identity: 0.939

gtccatcgccctgtcaacagggaaccgcgtagc	CRISPR spacer
gtccatcgccctgtcaccagggaaccgcgcagc	Protospacer
**************** ************.***

6. spacer 1.3|73770|33|NZ_CP007044|PILER-CR matches to NZ_CP020047 (Thiomonas intermedia strain ATCC 15466 plasmid pXI1, complete sequence) position: , mismatch: 2, identity: 0.939

gtccatcgccctgtcaacagggaaccgcgtagc	CRISPR spacer
gtccatcgccctgtcaccagggaaccgcgcagc	Protospacer
**************** ************.***

7. spacer 1.3|73770|33|NZ_CP007044|PILER-CR matches to AJ297913 (Uncultured bacterium plasmid pIPO2T, complete sequence) position: , mismatch: 2, identity: 0.939

gtccatcgccctgtcaacagggaaccgcgtagc	CRISPR spacer
gtccatcgccctgtcaccagggaaccgcgcagc	Protospacer
**************** ************.***

8. spacer 1.3|73770|33|NZ_CP007044|PILER-CR matches to NC_010332 (Collimonas fungivorans plasmid pTer331, complete sequence) position: , mismatch: 2, identity: 0.939

gtccatcgccctgtcaacagggaaccgcgtagc	CRISPR spacer
gtccatcgccctgtcaccagggaaccgcgcagc	Protospacer
**************** ************.***

9. spacer 1.18|73767|33|NZ_CP007044|CRISPRCasFinder,CRT matches to NZ_MN366357 (Bacterium plasmid pALTS28, complete sequence) position: , mismatch: 2, identity: 0.939

gtccatcgccctgtcaacagggaaccgcgtagc	CRISPR spacer
gtccatcgccctgtcaccagggaaccgcgcagc	Protospacer
**************** ************.***

10. spacer 1.18|73767|33|NZ_CP007044|CRISPRCasFinder,CRT matches to NZ_CP020047 (Thiomonas intermedia strain ATCC 15466 plasmid pXI1, complete sequence) position: , mismatch: 2, identity: 0.939

gtccatcgccctgtcaacagggaaccgcgtagc	CRISPR spacer
gtccatcgccctgtcaccagggaaccgcgcagc	Protospacer
**************** ************.***

11. spacer 1.18|73767|33|NZ_CP007044|CRISPRCasFinder,CRT matches to AJ297913 (Uncultured bacterium plasmid pIPO2T, complete sequence) position: , mismatch: 2, identity: 0.939

gtccatcgccctgtcaacagggaaccgcgtagc	CRISPR spacer
gtccatcgccctgtcaccagggaaccgcgcagc	Protospacer
**************** ************.***

12. spacer 1.18|73767|33|NZ_CP007044|CRISPRCasFinder,CRT matches to NC_010332 (Collimonas fungivorans plasmid pTer331, complete sequence) position: , mismatch: 2, identity: 0.939

gtccatcgccctgtcaacagggaaccgcgtagc	CRISPR spacer
gtccatcgccctgtcaccagggaaccgcgcagc	Protospacer
**************** ************.***

13. spacer 1.1|73647|32|NZ_CP007044|PILER-CR,CRISPRCasFinder,CRT matches to NC_009930 (Acaryochloris marina MBIC11017 plasmid pREB5, complete sequence) position: , mismatch: 7, identity: 0.781

aatcg--gatgatccaccactgggttggtgtata	CRISPR spacer
--tcgtcaatgatccaccactggtttggagtagt	Protospacer
  ***  .*************** **** ***

14. spacer 1.8|74071|32|NZ_CP007044|PILER-CR matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcatggacgccaccgggttgcgcaggtcgtgg	Protospacer
. ************* ********* ** . *

15. spacer 1.8|74071|32|NZ_CP007044|PILER-CR matches to NC_010510 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence) position: , mismatch: 7, identity: 0.781

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
agatggacgccaccgcgtgccgcgtgtctccg	Protospacer
******************  ***.  **.*.*

16. spacer 1.14|74431|32|NZ_CP007044|PILER-CR matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 7, identity: 0.781

atgaatggcccgtatttttgcgttaatgcggt	CRISPR spacer
atttatcgcccttatttttgcgttaattctgc	Protospacer
**  ** **** *************** * *.

17. spacer 1.15|74491|32|NZ_CP007044|PILER-CR matches to NC_025466 (Shewanella sp. phage 3/49, complete genome) position: , mismatch: 7, identity: 0.781

aggttctg-ttggctgctgcatggcttgatttt	CRISPR spacer
-ggtgatatttggctgctgcataggttgatttg	Protospacer
 ***  *. *************.* *******

18. spacer 1.23|74068|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcatggacgccaccgggttgcgcaggtcgtgg	Protospacer
. ************* ********* ** . *

19. spacer 1.23|74068|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NC_010510 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence) position: , mismatch: 7, identity: 0.781

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
agatggacgccaccgcgtgccgcgtgtctccg	Protospacer
******************  ***.  **.*.*

20. spacer 1.29|74428|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 7, identity: 0.781

atgaatggcccgtatttttgcgttaatgcggt	CRISPR spacer
atttatcgcccttatttttgcgttaattctgc	Protospacer
**  ** **** *************** * *.

21. spacer 1.30|74488|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NC_025466 (Shewanella sp. phage 3/49, complete genome) position: , mismatch: 7, identity: 0.781

aggttctg-ttggctgctgcatggcttgatttt	CRISPR spacer
-ggtgatatttggctgctgcataggttgatttg	Protospacer
 ***  *. *************.* *******

22. spacer 2.1|87381|32|NZ_CP007044|CRISPRCasFinder,CRT matches to KX119202 (Helicobacter phage Pt1293U, complete genome) position: , mismatch: 7, identity: 0.781

tgatcaatgagttgtaactattca-gatgtatc	CRISPR spacer
ggatcaatgagttgtaacacttcatggcgttt-	Protospacer
 *****************  **** *..** *

23. spacer 2.4|87561|32|NZ_CP007044|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025114 (Bradyrhizobium sp. SK17 strain CBNU plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

gcggcatggtttccccaagcgcga-atgatatt	CRISPR spacer
gcggcatggtggccccaagcgcggtgtgatgg-	Protospacer
**********  ***********. .****.

24. spacer 2.4|87561|32|NZ_CP007044|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044544 (Bradyrhizobium betae strain PL7HG1 plasmid pBbPL7HG1, complete sequence) position: , mismatch: 7, identity: 0.781

gcggcatggtttccccaagcgcga-atgatatt	CRISPR spacer
gcggcatggtggccccaagcgcggtgtgatgg-	Protospacer
**********  ***********. .****.

25. spacer 2.5|87621|32|NZ_CP007044|CRISPRCasFinder,CRT,PILER-CR matches to MN693893 (Marine virus AFVG_250M400, complete genome) position: , mismatch: 7, identity: 0.781

gcacgagcttcacgctcatgctcagggtaaga	CRISPR spacer
gtccgagcttcacgctcatgctccgggtgcat	Protospacer
*. ******************** ****. .

26. spacer 2.5|87621|32|NZ_CP007044|CRISPRCasFinder,CRT,PILER-CR matches to MN694280 (Marine virus AFVG_250M397, complete genome) position: , mismatch: 7, identity: 0.781

gcacgagcttcacgctcatgctcagggtaaga	CRISPR spacer
gtccgagcttcacgctcatgctccgggtgcat	Protospacer
*. ******************** ****. .

27. spacer 2.5|87621|32|NZ_CP007044|CRISPRCasFinder,CRT,PILER-CR matches to MN694299 (Marine virus AFVG_250M399, complete genome) position: , mismatch: 7, identity: 0.781

gcacgagcttcacgctcatgctcagggtaaga	CRISPR spacer
gtccgagcttcacgctcatgctccgggtgcat	Protospacer
*. ******************** ****. .

28. spacer 2.5|87621|32|NZ_CP007044|CRISPRCasFinder,CRT,PILER-CR matches to MN694718 (Marine virus AFVG_250M398, complete genome) position: , mismatch: 7, identity: 0.781

gcacgagcttcacgctcatgctcagggtaaga	CRISPR spacer
gtccgagcttcacgctcatgctccgggtgcat	Protospacer
*. ******************** ****. .

29. spacer 3.9|123131|32|NZ_CP007044|CRISPRCasFinder,CRT matches to KY554772 (Lactococcus phage AM5, complete genome) position: , mismatch: 7, identity: 0.781

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccattaactcttttaatttatcaaa	Protospacer
 . .***** ********************.

30. spacer 3.9|123131|32|NZ_CP007044|CRISPRCasFinder,CRT matches to KY554777 (Lactococcus phage LW81, complete genome) position: , mismatch: 7, identity: 0.781

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccattaactcttttaatttatcaaa	Protospacer
 . .***** ********************.

31. spacer 3.9|123131|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NC_049856 (Lactococcus phage AM4, complete genome) position: , mismatch: 7, identity: 0.781

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccattaactcttttaatttatcaaa	Protospacer
 . .***** ********************.

32. spacer 3.24|123133|32|NZ_CP007044|PILER-CR matches to KY554772 (Lactococcus phage AM5, complete genome) position: , mismatch: 7, identity: 0.781

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccattaactcttttaatttatcaaa	Protospacer
 . .***** ********************.

33. spacer 3.24|123133|32|NZ_CP007044|PILER-CR matches to KY554777 (Lactococcus phage LW81, complete genome) position: , mismatch: 7, identity: 0.781

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccattaactcttttaatttatcaaa	Protospacer
 . .***** ********************.

34. spacer 3.24|123133|32|NZ_CP007044|PILER-CR matches to NC_049856 (Lactococcus phage AM4, complete genome) position: , mismatch: 7, identity: 0.781

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccattaactcttttaatttatcaaa	Protospacer
 . .***** ********************.

35. spacer 1.12|74311|32|NZ_CP007044|PILER-CR matches to KT895374 (Bacillus phage vB_BpuM-BpSp, complete genome) position: , mismatch: 8, identity: 0.75

agaattag---cgatattaaacaagatgatagtga	CRISPR spacer
---atcaaacttgatattaaaaaagatgatattga	Protospacer
   **.*.   .********* ********* ***

36. spacer 1.12|74311|32|NZ_CP007044|PILER-CR matches to MT623546 (Acinetobacter phage Ab_121, complete genome) position: , mismatch: 8, identity: 0.75

agaattagcgatattaaacaagatgatagtga	CRISPR spacer
cgtatccctgatattaaacaatatgatcgtga	Protospacer
 * **.  .************ ***** ****

37. spacer 1.17|73707|32|NZ_CP007044|CRISPRCasFinder,CRT matches to AJ783769 (Sulfolobus tengchongensis spindle-shaped virus STSV1 complete genome) position: , mismatch: 8, identity: 0.75

tcatctttactcgctttttcatctctttcttt	CRISPR spacer
tcatctttaaacgctttttcatcaatcttatc	Protospacer
*********  ************  *.*. *.

38. spacer 1.27|74308|32|NZ_CP007044|CRISPRCasFinder,CRT matches to KT895374 (Bacillus phage vB_BpuM-BpSp, complete genome) position: , mismatch: 8, identity: 0.75

agaattag---cgatattaaacaagatgatagtga	CRISPR spacer
---atcaaacttgatattaaaaaagatgatattga	Protospacer
   **.*.   .********* ********* ***

39. spacer 1.27|74308|32|NZ_CP007044|CRISPRCasFinder,CRT matches to MT623546 (Acinetobacter phage Ab_121, complete genome) position: , mismatch: 8, identity: 0.75

agaattagcgatattaaacaagatgatagtga	CRISPR spacer
cgtatccctgatattaaacaatatgatcgtga	Protospacer
 * **.  .************ ***** ****

40. spacer 2.4|87561|32|NZ_CP007044|CRISPRCasFinder,CRT,PILER-CR matches to NC_015162 (Deinococcus proteolyticus MRP plasmid pDEIPR02, complete sequence) position: , mismatch: 8, identity: 0.75

gcggcatggtttccccaagcgcgaa--tgatatt	CRISPR spacer
tgggcatgggtaccccaagcgcgaacttggga--	Protospacer
  ******* * *************  **. *

41. spacer 3.9|123131|32|NZ_CP007044|CRISPRCasFinder,CRT matches to KY554775 (Lactococcus phage AM11, complete genome) position: , mismatch: 8, identity: 0.75

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccatcaactcttttaatttatcaaa	Protospacer
 . .***** *.******************.

42. spacer 3.9|123131|32|NZ_CP007044|CRISPRCasFinder,CRT matches to KY554773 (Lactococcus phage AM8, complete genome) position: , mismatch: 8, identity: 0.75

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccatcaactcttttaatttatcaaa	Protospacer
 . .***** *.******************.

43. spacer 3.9|123131|32|NZ_CP007044|CRISPRCasFinder,CRT matches to KY554768 (Lactococcus phage AM1, complete genome) position: , mismatch: 8, identity: 0.75

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccatcaactcttttaatttatcaaa	Protospacer
 . .***** *.******************.

44. spacer 3.9|123131|32|NZ_CP007044|CRISPRCasFinder,CRT matches to KY554769 (Lactococcus phage AM2, complete genome) position: , mismatch: 8, identity: 0.75

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccatcaactcttttaatttatcaaa	Protospacer
 . .***** *.******************.

45. spacer 3.9|123131|32|NZ_CP007044|CRISPRCasFinder,CRT matches to KY554770 (Lactococcus phage AM3, complete genome) position: , mismatch: 8, identity: 0.75

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccatcaactcttttaatttatcaaa	Protospacer
 . .***** *.******************.

46. spacer 3.9|123131|32|NZ_CP007044|CRISPRCasFinder,CRT matches to HM029250 (Lactococcus phage 949, complete genome) position: , mismatch: 8, identity: 0.75

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccattaattcttttaatttatcaaa	Protospacer
 . .***** ****.***************.

47. spacer 3.9|123131|32|NZ_CP007044|CRISPRCasFinder,CRT matches to KY554776 (Lactococcus phage AM12, complete genome) position: , mismatch: 8, identity: 0.75

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccatcaactcttttaatttatcaaa	Protospacer
 . .***** *.******************.

48. spacer 3.9|123131|32|NZ_CP007044|CRISPRCasFinder,CRT matches to KY554774 (Lactococcus phage AM9, complete genome) position: , mismatch: 8, identity: 0.75

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccatcaactcttttaatttatcaaa	Protospacer
 . .***** *.******************.

49. spacer 3.9|123131|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NC_049857 (Lactococcus phage P1048, complete genome) position: , mismatch: 8, identity: 0.75

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccattagctcttttaatttatcaaa	Protospacer
 . .***** ***.****************.

50. spacer 3.11|123251|32|NZ_CP007044|CRISPRCasFinder,CRT matches to KM236247 (Bacillus phage Pascal, complete genome) position: , mismatch: 8, identity: 0.75

aagctcgtttactgcattcataatgttccgtg-	CRISPR spacer
aagttcttttactgcattcataa-gcggcataa	Protospacer
***.** **************** *.  *.*.

51. spacer 3.24|123133|32|NZ_CP007044|PILER-CR matches to KY554775 (Lactococcus phage AM11, complete genome) position: , mismatch: 8, identity: 0.75

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccatcaactcttttaatttatcaaa	Protospacer
 . .***** *.******************.

52. spacer 3.24|123133|32|NZ_CP007044|PILER-CR matches to KY554773 (Lactococcus phage AM8, complete genome) position: , mismatch: 8, identity: 0.75

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccatcaactcttttaatttatcaaa	Protospacer
 . .***** *.******************.

53. spacer 3.24|123133|32|NZ_CP007044|PILER-CR matches to KY554768 (Lactococcus phage AM1, complete genome) position: , mismatch: 8, identity: 0.75

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccatcaactcttttaatttatcaaa	Protospacer
 . .***** *.******************.

54. spacer 3.24|123133|32|NZ_CP007044|PILER-CR matches to KY554769 (Lactococcus phage AM2, complete genome) position: , mismatch: 8, identity: 0.75

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccatcaactcttttaatttatcaaa	Protospacer
 . .***** *.******************.

55. spacer 3.24|123133|32|NZ_CP007044|PILER-CR matches to KY554770 (Lactococcus phage AM3, complete genome) position: , mismatch: 8, identity: 0.75

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccatcaactcttttaatttatcaaa	Protospacer
 . .***** *.******************.

56. spacer 3.24|123133|32|NZ_CP007044|PILER-CR matches to HM029250 (Lactococcus phage 949, complete genome) position: , mismatch: 8, identity: 0.75

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccattaattcttttaatttatcaaa	Protospacer
 . .***** ****.***************.

57. spacer 3.24|123133|32|NZ_CP007044|PILER-CR matches to KY554776 (Lactococcus phage AM12, complete genome) position: , mismatch: 8, identity: 0.75

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccatcaactcttttaatttatcaaa	Protospacer
 . .***** *.******************.

58. spacer 3.24|123133|32|NZ_CP007044|PILER-CR matches to KY554774 (Lactococcus phage AM9, complete genome) position: , mismatch: 8, identity: 0.75

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccatcaactcttttaatttatcaaa	Protospacer
 . .***** *.******************.

59. spacer 3.24|123133|32|NZ_CP007044|PILER-CR matches to NC_049857 (Lactococcus phage P1048, complete genome) position: , mismatch: 8, identity: 0.75

atttcatcccttaactcttttaatttatcagt	CRISPR spacer
tcgccatccattagctcttttaatttatcaaa	Protospacer
 . .***** ***.****************.

60. spacer 3.26|123253|32|NZ_CP007044|PILER-CR matches to KM236247 (Bacillus phage Pascal, complete genome) position: , mismatch: 8, identity: 0.75

aagctcgtttactgcattcataatgttccgtg-	CRISPR spacer
aagttcttttactgcattcataa-gcggcataa	Protospacer
***.** **************** *.  *.*.

61. spacer 1.8|74071|32|NZ_CP007044|PILER-CR matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 9, identity: 0.719

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
tcttgggcgccagcgcgttgcgcagcttggtc	Protospacer
   ***.***** **************.  *

62. spacer 1.8|74071|32|NZ_CP007044|PILER-CR matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcacgaacgcctcggcgttgcgcagctccggc	Protospacer
. *.*.***** * ***************

63. spacer 1.8|74071|32|NZ_CP007044|PILER-CR matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcacgaacgcctcggcgttgcgcagctccggc	Protospacer
. *.*.***** * ***************

64. spacer 1.8|74071|32|NZ_CP007044|PILER-CR matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcacgaacgcctcggcgttgcgcagctccggc	Protospacer
. *.*.***** * ***************

65. spacer 1.8|74071|32|NZ_CP007044|PILER-CR matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcacgaacgcctcggcgttgcgcagctccggc	Protospacer
. *.*.***** * ***************

66. spacer 1.8|74071|32|NZ_CP007044|PILER-CR matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcacgaacgcctcggcgttgcgcagctccggc	Protospacer
. *.*.***** * ***************

67. spacer 1.8|74071|32|NZ_CP007044|PILER-CR matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcacgaacgcctcggcgttgcgcagctccggc	Protospacer
. *.*.***** * ***************

68. spacer 1.8|74071|32|NZ_CP007044|PILER-CR matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcacgaacgcctcggcgttgcgcagctccggc	Protospacer
. *.*.***** * ***************

69. spacer 1.8|74071|32|NZ_CP007044|PILER-CR matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcacgaacgcctcggcgttgcgcagctccggc	Protospacer
. *.*.***** * ***************

70. spacer 1.8|74071|32|NZ_CP007044|PILER-CR matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcacgaacgcctcggcgttgcgcagctccggc	Protospacer
. *.*.***** * ***************

71. spacer 1.8|74071|32|NZ_CP007044|PILER-CR matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcacgaacgcctcggcgttgcgcagctccggc	Protospacer
. *.*.***** * ***************

72. spacer 1.15|74491|32|NZ_CP007044|PILER-CR matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 9, identity: 0.719

aggttctgttggctgctgcatggct---tgatttt	CRISPR spacer
ctgttctgttgcctgttgcatggctatcggac---	Protospacer
  ********* ***.*********    **.

73. spacer 1.15|74491|32|NZ_CP007044|PILER-CR matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 9, identity: 0.719

aggttctgttggctgctgcatggct---tgatttt	CRISPR spacer
ctgttctgttgcctgttgcatggctatcggac---	Protospacer
  ********* ***.*********    **.

74. spacer 1.23|74068|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 9, identity: 0.719

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
tcttgggcgccagcgcgttgcgcagcttggtc	Protospacer
   ***.***** **************.  *

75. spacer 1.23|74068|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcacgaacgcctcggcgttgcgcagctccggc	Protospacer
. *.*.***** * ***************

76. spacer 1.23|74068|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcacgaacgcctcggcgttgcgcagctccggc	Protospacer
. *.*.***** * ***************

77. spacer 1.23|74068|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcacgaacgcctcggcgttgcgcagctccggc	Protospacer
. *.*.***** * ***************

78. spacer 1.23|74068|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcacgaacgcctcggcgttgcgcagctccggc	Protospacer
. *.*.***** * ***************

79. spacer 1.23|74068|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcacgaacgcctcggcgttgcgcagctccggc	Protospacer
. *.*.***** * ***************

80. spacer 1.23|74068|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcacgaacgcctcggcgttgcgcagctccggc	Protospacer
. *.*.***** * ***************

81. spacer 1.23|74068|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcacgaacgcctcggcgttgcgcagctccggc	Protospacer
. *.*.***** * ***************

82. spacer 1.23|74068|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcacgaacgcctcggcgttgcgcagctccggc	Protospacer
. *.*.***** * ***************

83. spacer 1.23|74068|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcacgaacgcctcggcgttgcgcagctccggc	Protospacer
. *.*.***** * ***************

84. spacer 1.23|74068|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcacgaacgcctcggcgttgcgcagctccggc	Protospacer
. *.*.***** * ***************

85. spacer 1.30|74488|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 9, identity: 0.719

aggttctgttggctgctgcatggct---tgatttt	CRISPR spacer
ctgttctgttgcctgttgcatggctatcggac---	Protospacer
  ********* ***.*********    **.

86. spacer 1.30|74488|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 9, identity: 0.719

aggttctgttggctgctgcatggct---tgatttt	CRISPR spacer
ctgttctgttgcctgttgcatggctatcggac---	Protospacer
  ********* ***.*********    **.

87. spacer 2.2|87441|32|NZ_CP007044|CRISPRCasFinder,CRT,PILER-CR matches to MN508356 (Acinetobacter phage VB_ApiP_XC38, complete genome) position: , mismatch: 9, identity: 0.719

ttgctaaaatatataactcttcgttggtatat	CRISPR spacer
ttatagccctatatatctctccgttggtatat	Protospacer
**.. .   ****** ****.***********

88. spacer 3.2|122712|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NZ_CP036405 (Komagataeibacter saccharivorans strain JH1 plasmid p221732, complete sequence) position: , mismatch: 9, identity: 0.719

cctgaaagacgaactgccagaggccagagatt	CRISPR spacer
actgaaggacgaactgcaagaggcacgtagct	Protospacer
 *****.********** ******  * ...*

89. spacer 3.2|122712|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NZ_CP023037 (Komagataeibacter saccharivorans strain CV1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cctgaaagacgaactgccagaggccagagatt	CRISPR spacer
actgaaggacgaactgcaagaggcacgtagct	Protospacer
 *****.********** ******  * ...*

90. spacer 3.3|122772|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NC_021492 (Enterobacter sp. R4-368 plasmid pENT01, complete sequence) position: , mismatch: 9, identity: 0.719

ttaaaaagctgaacgaagaagccagaaaggcg	CRISPR spacer
ttaaaaagctgaatgaaaaagccccggatccc	Protospacer
*************.***.*****  ..*  *

91. spacer 3.4|122832|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NZ_CP015221 (Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cttccagatgggctatcacaagctgaatacat	CRISPR spacer
cttccagctgggctatcacacgcgcgattttc	Protospacer
******* ************ **  .** . .

92. spacer 3.4|122832|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NZ_CP016621 (Microvirga ossetica strain V5/3m plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

cttccagatgggctatcacaagctgaatacat	CRISPR spacer
tggcccgatgggctttcacaagctgacaaaaa	Protospacer
.  ** ******** ***********  * *

93. spacer 3.5|122892|31|NZ_CP007044|CRISPRCasFinder,CRT matches to NZ_CP039697 (Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence) position: , mismatch: 9, identity: 0.71

tatgcgaatttcccgctgatcacgttggcgc	CRISPR spacer
ctcgttcatttctcgctgatcacgctggcga	Protospacer
. .*.  *****.***********.*****

94. spacer 3.6|122951|32|NZ_CP007044|CRISPRCasFinder,CRT matches to AY526908 (Bordetella phage BMP-1, complete genome) position: , mismatch: 9, identity: 0.719

taccgggcttcaagttggtggaaggtaagtta	CRISPR spacer
tgcccggcttcaagctggtggaaggtcgccgc	Protospacer
*.** *********.*********** . .

95. spacer 3.6|122951|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NC_005357 (Bordetella phage BPP-1, complete genome) position: , mismatch: 9, identity: 0.719

taccgggcttcaagttggtggaaggtaagtta	CRISPR spacer
tgcccggcttcaagctggtggaaggtcgccgc	Protospacer
*.** *********.*********** . .

96. spacer 3.6|122951|32|NZ_CP007044|CRISPRCasFinder,CRT matches to AY526909 (Bordetella phage BIP-1, complete genome) position: , mismatch: 9, identity: 0.719

taccgggcttcaagttggtggaaggtaagtta	CRISPR spacer
tgcccggcttcaagctggtggaaggtcgccgc	Protospacer
*.** *********.*********** . .

97. spacer 3.6|122951|32|NZ_CP007044|CRISPRCasFinder,CRT matches to MK929790 (Caulobacter phage RW, complete genome) position: , mismatch: 9, identity: 0.719

taccgggcttcaagttggtggaaggtaagtta	CRISPR spacer
tgccggggttcaagctggtggaaggccgcaaa	Protospacer
*.***** ******.**********. .   *

98. spacer 3.7|123011|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NC_019789 (Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence) position: , mismatch: 9, identity: 0.719

gaagccattgcacgggccgcagttatggtcat	CRISPR spacer
caatccactgcacgggccgcagttcatgcgag	Protospacer
 ** ***.****************   *. *

99. spacer 3.11|123251|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NC_014838 (Pantoea sp. At-9b plasmid pPAT9B01, complete sequence) position: , mismatch: 9, identity: 0.719

aagctcgtttactgcattcataatgttccgtg	CRISPR spacer
gcgctcgcctactgcattcataatgtcgattt	Protospacer
. *****..*****************.   *

100. spacer 3.12|123311|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NZ_CP045959 (Salmonella enterica subsp. enterica serovar Birkenhead strain AUSMDU00010532 plasmid pAUSMDU00010532_01, complete sequence) position: , mismatch: 9, identity: 0.719

aattggctcttttgaactgtatcaacgccaca	CRISPR spacer
ggcaggctcttttgaaccttatcaacggcccg	Protospacer
... *************. ******** * *.

101. spacer 3.17|122714|32|NZ_CP007044|PILER-CR matches to NZ_CP036405 (Komagataeibacter saccharivorans strain JH1 plasmid p221732, complete sequence) position: , mismatch: 9, identity: 0.719

cctgaaagacgaactgccagaggccagagatt	CRISPR spacer
actgaaggacgaactgcaagaggcacgtagct	Protospacer
 *****.********** ******  * ...*

102. spacer 3.17|122714|32|NZ_CP007044|PILER-CR matches to NZ_CP023037 (Komagataeibacter saccharivorans strain CV1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cctgaaagacgaactgccagaggccagagatt	CRISPR spacer
actgaaggacgaactgcaagaggcacgtagct	Protospacer
 *****.********** ******  * ...*

103. spacer 3.18|122774|32|NZ_CP007044|PILER-CR matches to NC_021492 (Enterobacter sp. R4-368 plasmid pENT01, complete sequence) position: , mismatch: 9, identity: 0.719

ttaaaaagctgaacgaagaagccagaaaggcg	CRISPR spacer
ttaaaaagctgaatgaaaaagccccggatccc	Protospacer
*************.***.*****  ..*  *

104. spacer 3.19|122834|32|NZ_CP007044|PILER-CR matches to NZ_CP015221 (Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cttccagatgggctatcacaagctgaatacat	CRISPR spacer
cttccagctgggctatcacacgcgcgattttc	Protospacer
******* ************ **  .** . .

105. spacer 3.19|122834|32|NZ_CP007044|PILER-CR matches to NZ_CP016621 (Microvirga ossetica strain V5/3m plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

cttccagatgggctatcacaagctgaatacat	CRISPR spacer
tggcccgatgggctttcacaagctgacaaaaa	Protospacer
.  ** ******** ***********  * *

106. spacer 3.20|122894|31|NZ_CP007044|PILER-CR matches to NZ_CP039697 (Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence) position: , mismatch: 9, identity: 0.71

tatgcgaatttcccgctgatcacgttggcgc	CRISPR spacer
ctcgttcatttctcgctgatcacgctggcga	Protospacer
. .*.  *****.***********.*****

107. spacer 3.21|122953|32|NZ_CP007044|PILER-CR matches to AY526908 (Bordetella phage BMP-1, complete genome) position: , mismatch: 9, identity: 0.719

taccgggcttcaagttggtggaaggtaagtta	CRISPR spacer
tgcccggcttcaagctggtggaaggtcgccgc	Protospacer
*.** *********.*********** . .

108. spacer 3.21|122953|32|NZ_CP007044|PILER-CR matches to NC_005357 (Bordetella phage BPP-1, complete genome) position: , mismatch: 9, identity: 0.719

taccgggcttcaagttggtggaaggtaagtta	CRISPR spacer
tgcccggcttcaagctggtggaaggtcgccgc	Protospacer
*.** *********.*********** . .

109. spacer 3.21|122953|32|NZ_CP007044|PILER-CR matches to AY526909 (Bordetella phage BIP-1, complete genome) position: , mismatch: 9, identity: 0.719

taccgggcttcaagttggtggaaggtaagtta	CRISPR spacer
tgcccggcttcaagctggtggaaggtcgccgc	Protospacer
*.** *********.*********** . .

110. spacer 3.21|122953|32|NZ_CP007044|PILER-CR matches to MK929790 (Caulobacter phage RW, complete genome) position: , mismatch: 9, identity: 0.719

taccgggcttcaagttggtggaaggtaagtta	CRISPR spacer
tgccggggttcaagctggtggaaggccgcaaa	Protospacer
*.***** ******.**********. .   *

111. spacer 3.22|123013|32|NZ_CP007044|PILER-CR matches to NC_019789 (Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence) position: , mismatch: 9, identity: 0.719

gaagccattgcacgggccgcagttatggtcat	CRISPR spacer
caatccactgcacgggccgcagttcatgcgag	Protospacer
 ** ***.****************   *. *

112. spacer 3.26|123253|32|NZ_CP007044|PILER-CR matches to NC_014838 (Pantoea sp. At-9b plasmid pPAT9B01, complete sequence) position: , mismatch: 9, identity: 0.719

aagctcgtttactgcattcataatgttccgtg	CRISPR spacer
gcgctcgcctactgcattcataatgtcgattt	Protospacer
. *****..*****************.   *

113. spacer 3.27|123313|32|NZ_CP007044|PILER-CR matches to NZ_CP045959 (Salmonella enterica subsp. enterica serovar Birkenhead strain AUSMDU00010532 plasmid pAUSMDU00010532_01, complete sequence) position: , mismatch: 9, identity: 0.719

aattggctcttttgaactgtatcaacgccaca	CRISPR spacer
ggcaggctcttttgaaccttatcaacggcccg	Protospacer
... *************. ******** * *.

114. spacer 1.8|74071|32|NZ_CP007044|PILER-CR matches to NC_047911 (Faecalibacterium phage FP_Lagaffe, complete genome) position: , mismatch: 10, identity: 0.688

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
ttgtggacgccaccgcgttgatcagcagggcg	Protospacer
  .*****************  ****    .*

115. spacer 1.8|74071|32|NZ_CP007044|PILER-CR matches to MK977705 (Gordonia Phage Mollymur, complete genome) position: , mismatch: 10, identity: 0.688

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcccccacgccaccgcgtcgtgcagctcctcg	Protospacer
.  .  ************.*.********..*

116. spacer 1.11|74251|32|NZ_CP007044|PILER-CR matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 10, identity: 0.688

tgaacaatgaagttcagccggttcatatcgtt	CRISPR spacer
aattgaatgaatttcagccgtttcatataaat	Protospacer
 .   ****** ******** ******* . *

117. spacer 1.16|74551|32|NZ_CP007044|PILER-CR matches to MN693792 (Marine virus AFVG_250M943, complete genome) position: , mismatch: 10, identity: 0.688

taatcattgaccatttcaataaacggttggct	CRISPR spacer
ctgtgattgaccatttcaatgaactgttaaaa	Protospacer
. .* ***************.*** ***..

118. spacer 1.16|74551|32|NZ_CP007044|PILER-CR matches to MN694119 (Marine virus AFVG_250M974, complete genome) position: , mismatch: 10, identity: 0.688

taatcattgaccatttcaataaacggttggct	CRISPR spacer
ctgtgattgaccatttcaatgaactgttaaaa	Protospacer
. .* ***************.*** ***..

119. spacer 1.16|74551|32|NZ_CP007044|PILER-CR matches to MN694234 (Marine virus AFVG_250M972, complete genome) position: , mismatch: 10, identity: 0.688

taatcattgaccatttcaataaacggttggct	CRISPR spacer
ctgtgattgaccatttcaatgaactgttaaaa	Protospacer
. .* ***************.*** ***..

120. spacer 1.16|74551|32|NZ_CP007044|PILER-CR matches to MN692978 (Marine virus AFVG_117M13, complete genome) position: , mismatch: 10, identity: 0.688

taatcattgaccatttcaataaacggttggct	CRISPR spacer
ctgtgattgaccatttcaatgaactgttaaaa	Protospacer
. .* ***************.*** ***..

121. spacer 1.16|74551|32|NZ_CP007044|PILER-CR matches to MN694043 (Marine virus AFVG_250M973, complete genome) position: , mismatch: 10, identity: 0.688

taatcattgaccatttcaataaacggttggct	CRISPR spacer
ctgtgattgaccatttcaatgaactgttaaaa	Protospacer
. .* ***************.*** ***..

122. spacer 1.23|74068|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NC_047911 (Faecalibacterium phage FP_Lagaffe, complete genome) position: , mismatch: 10, identity: 0.688

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
ttgtggacgccaccgcgttgatcagcagggcg	Protospacer
  .*****************  ****    .*

123. spacer 1.23|74068|32|NZ_CP007044|CRISPRCasFinder,CRT matches to MK977705 (Gordonia Phage Mollymur, complete genome) position: , mismatch: 10, identity: 0.688

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
gcccccacgccaccgcgtcgtgcagctcctcg	Protospacer
.  .  ************.*.********..*

124. spacer 1.26|74248|32|NZ_CP007044|CRISPRCasFinder,CRT matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 10, identity: 0.688

tgaacaatgaagttcagccggttcatatcgtt	CRISPR spacer
aattgaatgaatttcagccgtttcatataaat	Protospacer
 .   ****** ******** ******* . *

125. spacer 1.31|74548|32|NZ_CP007044|CRISPRCasFinder,CRT matches to MN693792 (Marine virus AFVG_250M943, complete genome) position: , mismatch: 10, identity: 0.688

taatcattgaccatttcaataaacggttggct	CRISPR spacer
ctgtgattgaccatttcaatgaactgttaaaa	Protospacer
. .* ***************.*** ***..

126. spacer 1.31|74548|32|NZ_CP007044|CRISPRCasFinder,CRT matches to MN694119 (Marine virus AFVG_250M974, complete genome) position: , mismatch: 10, identity: 0.688

taatcattgaccatttcaataaacggttggct	CRISPR spacer
ctgtgattgaccatttcaatgaactgttaaaa	Protospacer
. .* ***************.*** ***..

127. spacer 1.31|74548|32|NZ_CP007044|CRISPRCasFinder,CRT matches to MN694234 (Marine virus AFVG_250M972, complete genome) position: , mismatch: 10, identity: 0.688

taatcattgaccatttcaataaacggttggct	CRISPR spacer
ctgtgattgaccatttcaatgaactgttaaaa	Protospacer
. .* ***************.*** ***..

128. spacer 1.31|74548|32|NZ_CP007044|CRISPRCasFinder,CRT matches to MN692978 (Marine virus AFVG_117M13, complete genome) position: , mismatch: 10, identity: 0.688

taatcattgaccatttcaataaacggttggct	CRISPR spacer
ctgtgattgaccatttcaatgaactgttaaaa	Protospacer
. .* ***************.*** ***..

129. spacer 1.31|74548|32|NZ_CP007044|CRISPRCasFinder,CRT matches to MN694043 (Marine virus AFVG_250M973, complete genome) position: , mismatch: 10, identity: 0.688

taatcattgaccatttcaataaacggttggct	CRISPR spacer
ctgtgattgaccatttcaatgaactgttaaaa	Protospacer
. .* ***************.*** ***..

130. spacer 2.4|87561|32|NZ_CP007044|CRISPRCasFinder,CRT,PILER-CR matches to NC_031050 (Enterobacteria phage vB_EcoS_NBD2, complete genome) position: , mismatch: 10, identity: 0.688

gcggcatggtttccccaagcgcgaatgatatt	CRISPR spacer
acggcatggtttgccgaagcgcgagcaaacgc	Protospacer
.*********** ** ********...*   .

131. spacer 1.8|74071|32|NZ_CP007044|PILER-CR matches to JQ680370 (Unidentified phage clone 2204_scaffold812 genomic sequence) position: , mismatch: 11, identity: 0.656

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
ttgtggacgccaccgcgttgatcagcagggca	Protospacer
  .*****************  ****    ..

132. spacer 1.23|74068|32|NZ_CP007044|CRISPRCasFinder,CRT matches to JQ680370 (Unidentified phage clone 2204_scaffold812 genomic sequence) position: , mismatch: 11, identity: 0.656

agatggacgccaccgcgttgcgcagctccctg	CRISPR spacer
ttgtggacgccaccgcgttgatcagcagggca	Protospacer
  .*****************  ****    ..

133. spacer 2.7|87741|32|NZ_CP007044|CRISPRCasFinder,CRT,PILER-CR matches to MN694606 (Marine virus AFVG_250M830, complete genome) position: , mismatch: 11, identity: 0.656

aaaaatccgttaggcggcgaattgatgaaagc	CRISPR spacer
gcgggcgcgtttggcggcgaatggatgaaaag	Protospacer
. .... **** ********** *******.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

285664 : 342160

uncultured_Caudovirales_phage(36.36%)

tRNA,protease,transposase,integrase

attL 317087:317105|attR 342386:342404

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024912408.1\|285664_286675_-\|protease	protease modulator HflC	NA	NA	NA	NA
WP_024912407.1\|286678_287938_-\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_024912406.1\|288030_289311_-	GTPase HflX	NA	NA	NA	NA
WP_024912405.1\|289409_289715_-	RNA chaperone Hfq	NA	NA	NA	NA
WP_024912404.1\|289829_290771_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_024912403.1\|290763_292626_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	5.3e-61	29.8
WP_024912402.1\|292649_294374_-	N-acetylmuramoyl-L-alanine amidase AmiB	M1IQ67	Bacillus_virus	1.3e-18	26.1
WP_024912401.1\|294381_294852_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_024912400.1\|294862_296377_-	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_024912399.1\|296375_297515_+\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_045784823.1\|298211_298766_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_024912397.1\|298918_299788_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_024912396.1\|299987_300377_-	tautomerase family protein	NA	NA	NA	NA
WP_024912395.1\|300407_301076_-	NAD(P)H dehydrogenase	NA	NA	NA	NA
WP_024912394.1\|301226_302081_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_024912393.1\|302415_303396_-	acyltransferase	NA	NA	NA	NA
WP_024912392.1\|303495_304374_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_154666859.1\|304274_304874_-	hypothetical protein	NA	NA	NA	NA
WP_024912390.1\|305180_305549_-	hypothetical protein	NA	NA	NA	NA
WP_024912389.1\|305548_305905_-	DUF2778 domain-containing protein	A0A2H4IBA1	Erwinia_phage	1.3e-24	48.3
WP_024912388.1\|306227_306758_+	DUF1697 domain-containing protein	NA	NA	NA	NA
WP_024912387.1\|306979_308122_+	hypothetical protein	NA	NA	NA	NA
WP_024914516.1\|308672_309875_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.8e-77	71.0
WP_024914325.1\|310160_311066_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_024914324.1\|311264_311738_+	GyrI-like domain-containing protein	NA	NA	NA	NA
WP_037407555.1\|312043_312484_-	hypothetical protein	NA	NA	NA	NA
WP_154667028.1\|313097_313454_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_024914322.1\|313972_316684_+	DUF2726 domain-containing protein	NA	NA	NA	NA
317087:317105	attL	NA	NA	NA	NA
WP_024914321.1\|317706_318780_+	DUF262 domain-containing protein	A0A0R6PJX3	Moraxella_phage	8.3e-51	35.2
WP_024914320.1\|318781_319516_+	hypothetical protein	NA	NA	NA	NA
WP_037407577.1\|319530_320601_+	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	2.7e-102	53.2
WP_024914318.1\|320602_321385_+	HNH endonuclease	NA	NA	NA	NA
WP_024914317.1\|321651_321996_-	DUF2645 family protein	NA	NA	NA	NA
WP_024914316.1\|321992_322715_-	hypothetical protein	NA	NA	NA	NA
WP_024914315.1\|322729_323209_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_024914314.1\|323433_323712_-	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_024914313.1\|324596_325460_+\|integrase	integrase	NA	NA	NA	NA
WP_024914312.1\|325559_325934_-	hypothetical protein	NA	NA	NA	NA
WP_024914311.1\|325930_328114_-	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_024914310.1\|328119_330435_-	RHS repeat protein	NA	NA	NA	NA
WP_154666860.1\|330494_331172_-	hypothetical protein	NA	NA	NA	NA
WP_024914308.1\|331388_331568_-	hypothetical protein	NA	NA	NA	NA
WP_024914307.1\|332445_332739_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_037407553.1\|332805_333528_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.8e-94	72.2
WP_024914305.1\|333535_334081_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_024914304.1\|334156_334516_+	arsenic metallochaperone ArsD family protein	NA	NA	NA	NA
WP_167336764.1\|334560_336321_+	arsenical pump-driving ATPase	NA	NA	NA	NA
WP_024914302.1\|336377_336806_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.1e-50	70.0
WP_024914301.1\|336868_338158_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	2.1e-170	72.8
WP_024914300.1\|338376_338715_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	4.5e-19	53.6
WP_024914299.1\|339238_340267_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_024914298.1\|340453_342160_-\|integrase	tyrosine-type recombinase/integrase	Q5QF66	Pseudomonas_virus	1.6e-96	49.2
342386:342404	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1709291 : 1717142

uncultured_Caudovirales_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024911242.1\|1709291_1709909_+	helix-turn-helix transcriptional regulator	A0A2H4J122	uncultured_Caudovirales_phage	6.2e-35	45.3
WP_024911243.1\|1709937_1710828_+	queuosine precursor transporter	A0A2H4J2N7	uncultured_Caudovirales_phage	1.1e-64	46.2
WP_024911244.1\|1710811_1711648_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	A0A2I7SAX1	Vibrio_phage	1.9e-39	37.1
WP_024911245.1\|1711742_1713581_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
WP_024911246.1\|1713738_1715490_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.8e-72	38.9
WP_001144069.1\|1715625_1715841_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_024911247.1\|1716128_1717142_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.4e-108	58.9

DBSCAN-SWA_3

2932349 : 3003807

uncultured_virus(12.5%)

tail,lysis,transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025297165.1\|2932349_2933558_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	6.0e-50	48.4
WP_154666951.1\|2934067_2934166_+	hypothetical protein	NA	NA	NA	NA
WP_024914172.1\|2934697_2935228_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_037407480.1\|2935409_2937962_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_051506738.1\|2938107_2938845_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_162149760.1\|2938932_2939994_+	fimbrial protein	NA	NA	NA	NA
WP_024914176.1\|2940518_2941664_+	ABC transporter permease	NA	NA	NA	NA
WP_024914177.1\|2941657_2942458_+	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	1.6e-11	31.2
WP_024914178.1\|2942461_2943403_+	MCE family protein	NA	NA	NA	NA
WP_024914179.1\|2943399_2944050_+	hypothetical protein	NA	NA	NA	NA
WP_024914180.1\|2944263_2944662_+	RidA family protein	NA	NA	NA	NA
WP_045784789.1\|2944658_2945783_+	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_024914182.1\|2945849_2946740_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_024914183.1\|2946908_2947811_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_024914184.1\|2947926_2948916_+	zinc-dependent alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_024914185.1\|2948942_2949641_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_037407473.1\|2949754_2951065_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_024914187.1\|2951154_2952072_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_024914188.1\|2952163_2952526_-	hypothetical protein	NA	NA	NA	NA
WP_024914189.1\|2952542_2953034_-	ATPase	NA	NA	NA	NA
WP_024914190.1\|2953087_2953414_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_154666952.1\|2953542_2954253_-	hypothetical protein	NA	NA	NA	NA
WP_024914192.1\|2954379_2955282_-	hypothetical protein	NA	NA	NA	NA
WP_024914193.1\|2955268_2955622_-	hypothetical protein	NA	NA	NA	NA
WP_162149761.1\|2955618_2956929_-	DUF4303 domain-containing protein	NA	NA	NA	NA
WP_024914195.1\|2957110_2958454_+	esterase-like activity of phytase family protein	NA	NA	NA	NA
WP_024914196.1\|2958623_2959340_-	UTRA domain-containing protein	NA	NA	NA	NA
WP_024914197.1\|2959448_2960510_+	solute-binding protein	NA	NA	NA	NA
WP_025297164.1\|2960517_2961318_+	alkaline phosphatase family protein	NA	NA	NA	NA
WP_024914209.1\|2961345_2962185_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_024914208.1\|2962218_2963004_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_024914207.1\|2963006_2963999_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.1e-31	36.8
WP_024914206.1\|2963995_2964652_+	HAD-IB family hydrolase	NA	NA	NA	NA
WP_024914204.1\|2966873_2967986_+	macrolide transporter subunit MacA	NA	NA	NA	NA
WP_024914203.1\|2967982_2969929_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.7e-38	38.6
WP_025297163.1\|2970135_2989512_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	9.7e-166	27.5
WP_154666953.1\|2989671_2990325_+	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA
WP_154666954.1\|2990343_2990451_-	hypothetical protein	NA	NA	NA	NA
WP_071882828.1\|2990495_2990753_-	hypothetical protein	NA	NA	NA	NA
WP_024913642.1\|2991435_2992665_+	bifunctional glucose-1-phosphatase/inositol phosphatase	NA	NA	NA	NA
WP_081758478.1\|2992750_2993458_+	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA
WP_024913640.1\|2993563_2994211_+	DNA oxidative demethylase AlkB	NA	NA	NA	NA
WP_024913639.1\|2994454_2995342_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_024913638.1\|2995490_2996708_+	MFS transporter	NA	NA	NA	NA
WP_024913637.1\|2997194_2997509_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_024913636.1\|2998008_2998425_+	GFA family protein	NA	NA	NA	NA
WP_024913635.1\|2999172_2999664_-\|lysis	lysis protein	Q8HA85	Salmonella_phage	1.7e-19	42.5
WP_024913634.1\|2999770_3000169_-	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	6.2e-36	53.1
WP_024913633.1\|3000165_3000474_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	6.1e-15	39.2
WP_024913632.1\|3000849_3001299_+\|tail	phage tail protein	NA	NA	NA	NA
WP_024913631.1\|3001337_3002405_+\|tail	phage tail sheath family protein	NA	NA	NA	NA
WP_024913630.1\|3002427_3003807_+\|tail	phage tail sheath family protein	NA	NA	NA	NA

DBSCAN-SWA_4

3243420 : 3278750

Salmonella_phage(53.12%)

head,integrase,capsid,holin,tail,plate,portal

attL 3242907:3242966|attR 3278869:3278978

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3242907:3242966	attL	NA	NA	NA	NA
WP_024911047.1\|3243420_3244539_-	bacteriophage late gene control protein D	A0A0M4REC6	Salmonella_phage	6.0e-121	68.0
WP_024911046.1\|3244687_3245854_+\|tail	tail protein	A0A0M4S6M1	Salmonella_phage	2.2e-134	60.8
WP_024911045.1\|3245864_3246380_+\|tail	phage major tail tube protein	A0A0M5M1I5	Salmonella_phage	8.8e-59	62.0
WP_024911044.1\|3246448_3246757_+\|tail	phage tail assembly protein	A0A0M4RCV2	Salmonella_phage	3.7e-20	60.5
WP_071882834.1\|3246774_3246897_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	5.1e-10	71.8
WP_024911043.1\|3246899_3249962_+\|tail	phage tail tape measure protein	A0A1S6L010	Salmonella_phage	2.1e-139	47.5
WP_024911042.1\|3249993_3250422_+\|tail	phage tail protein	A0A1J0I2L5	Salmonella_phage	5.4e-46	64.7
WP_024911041.1\|3250505_3251672_-	hypothetical protein	S4TP62	Salmonella_phage	2.1e-47	48.4
WP_024911040.1\|3251680_3254680_-	hypothetical protein	Q6QI97	Burkholderia_phage	7.8e-06	50.9
WP_024911039.1\|3254681_3255281_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	6.9e-55	53.7
WP_024911038.1\|3255273_3256185_-\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	2.0e-106	67.1
WP_024911037.1\|3256181_3256532_-\|plate	baseplate assembly protein	A0A0F7L9X3	Escherichia_phage	1.6e-24	50.0
WP_024911036.1\|3256528_3257083_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	3.5e-37	47.8
WP_024911035.1\|3257179_3257809_-	phage virion morphogenesis protein	A0A0M4RCU1	Salmonella_phage	1.1e-34	44.0
WP_024911034.1\|3257805_3258297_-\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	1.5e-23	40.9
WP_024911033.1\|3258360_3258909_-	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_037405874.1\|3258905_3259481_-	N-acetylmuramidase family protein	A0A248SKU3	Klebsiella_phage	3.9e-55	56.5
WP_037405872.1\|3259458_3259770_-\|holin	phage holin family protein	A4PE35	Ralstonia_virus	1.7e-09	43.0
WP_024911032.1\|3259759_3260146_-	hypothetical protein	A0A1S5NRL1	Burkholderia_phage	5.3e-08	41.1
WP_024911031.1\|3260180_3260387_-\|tail	tail protein X	U5N3E7	Enterobacteria_phage	3.4e-14	60.3
WP_024911030.1\|3260386_3260881_-\|head	head completion/stabilization protein	E5E3S2	Burkholderia_phage	1.7e-35	51.8
WP_081758410.1\|3260978_3261833_-	hypothetical protein	B9A7B6	Serratia_phage	1.5e-47	42.7
WP_024911028.1\|3261885_3262920_-\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	6.6e-122	62.0
WP_024911027.1\|3262956_3263817_-\|capsid	GPO family capsid scaffolding protein	A0A1J0I2E9	Salmonella_phage	5.6e-58	54.4
WP_024911026.1\|3263973_3265695_+	oxidoreductase	A0A0M4S6K7	Salmonella_phage	8.3e-186	58.9
WP_081758414.1\|3265874_3266798_+\|portal	phage portal protein	A0A0M5M1H6	Salmonella_phage	5.5e-120	66.3
WP_024911024.1\|3267243_3268056_-	hypothetical protein	A0A0M4R2T6	Salmonella_phage	1.9e-23	30.9
WP_024911023.1\|3268068_3268284_-	hypothetical protein	NA	NA	NA	NA
WP_024911022.1\|3268464_3270990_-	replication endonuclease	A0A0M3ULG0	Salmonella_phage	2.0e-135	40.5
WP_024911021.1\|3271150_3271558_-	DUF3850 domain-containing protein	C9E2N9	Enterococcus_phage	5.0e-09	68.1
WP_037405868.1\|3271526_3272399_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	E5G6L8	Salmonella_phage	5.8e-79	54.3
WP_024911019.1\|3272395_3272689_-	hypothetical protein	NA	NA	NA	NA
WP_045784796.1\|3272685_3272931_-	hypothetical protein	NA	NA	NA	NA
WP_024911017.1\|3273144_3273420_-	hypothetical protein	NA	NA	NA	NA
WP_154666966.1\|3273416_3273566_-	hypothetical protein	NA	NA	NA	NA
WP_024911016.1\|3273565_3273802_-	hypothetical protein	NA	NA	NA	NA
WP_024911015.1\|3274109_3274598_+	hypothetical protein	NA	NA	NA	NA
WP_024911014.1\|3274775_3275015_+	hypothetical protein	NA	NA	NA	NA
WP_024911013.1\|3275004_3275208_-	hypothetical protein	NA	NA	NA	NA
WP_024911012.1\|3275218_3275410_-	hypothetical protein	NA	NA	NA	NA
WP_024911011.1\|3275494_3275833_+	helix-turn-helix transcriptional regulator	A0A2H4JFL3	uncultured_Caudovirales_phage	1.5e-11	33.6
WP_037405863.1\|3275860_3276751_+	hypothetical protein	A0A0U4J8W4	Pseudomonas_phage	6.9e-19	29.9
WP_024911009.1\|3276840_3277746_+	hypothetical protein	NA	NA	NA	NA
WP_024911008.1\|3277745_3278750_+\|integrase	tyrosine-type recombinase/integrase	Q94N03	Haemophilus_virus	2.4e-105	59.0
3278869:3278978	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3448063 : 3455068

Escherichia_phage(50.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037405816.1\|3448063_3448360_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	4.9e-06	36.2
WP_024910856.1\|3448346_3448739_+	M15 family metallopeptidase	M9UXQ4	Escherichia_phage	6.7e-35	62.8
WP_024910855.1\|3448822_3450070_+	hypothetical protein	NA	NA	NA	NA
WP_051506683.1\|3450180_3450528_+	hypothetical protein	NA	NA	NA	NA
WP_024910853.1\|3450712_3450979_-	hypothetical protein	NA	NA	NA	NA
WP_154666973.1\|3451200_3451380_+	hypothetical protein	K7P6U5	Enterobacteria_phage	4.7e-12	64.6
WP_024910852.1\|3451572_3451869_+	hypothetical protein	O64316	Escherichia_phage	4.8e-17	63.2
WP_081758411.1\|3452397_3453330_+	DUF1983 domain-containing protein	Q9MCR7	Enterobacteria_phage	1.1e-30	54.3
WP_024910850.1\|3453385_3455068_+	hypothetical protein	W6ATR4	Escherichia_phage	2.4e-49	66.2

DBSCAN-SWA_6

3871493 : 3923720

Bacillus_phage(20.0%)

integrase,protease,transposase,holin

attL 3881544:3881558|attR 3929823:3929837

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024912989.1\|3871493_3872372_-\|protease	protease HtpX	NA	NA	NA	NA
WP_024912988.1\|3872568_3872949_-	DUF4260 domain-containing protein	NA	NA	NA	NA
WP_024912987.1\|3873036_3875091_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	7.5e-85	33.2
WP_024912986.1\|3875110_3875827_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_024912985.1\|3875922_3876420_-	GAF domain-containing protein	NA	NA	NA	NA
WP_024912984.1\|3876654_3877902_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_024912983.1\|3877870_3880501_+	PqiB family protein	NA	NA	NA	NA
WP_024912982.1\|3880638_3880887_+	DUF1480 family protein	NA	NA	NA	NA
WP_024912981.1\|3881028_3881418_-	ASCH domain-containing protein	NA	NA	NA	NA
3881544:3881558	attL	NA	NA	NA	NA
WP_024912980.1\|3881808_3882024_-	hypothetical protein	NA	NA	NA	NA
WP_024912979.1\|3882195_3882405_+	hypothetical protein	NA	NA	NA	NA
WP_024912978.1\|3882526_3883192_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_024912976.1\|3883975_3885226_+	MFS transporter	NA	NA	NA	NA
WP_024912975.1\|3885225_3886668_+	glycoside hydrolase family 32 protein	S6ATV4	Bacillus_phage	1.3e-30	26.2
WP_024912974.1\|3886708_3887710_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_024912973.1\|3887777_3888341_-	HutD family protein	NA	NA	NA	NA
WP_024912972.1\|3888340_3889711_-	formimidoylglutamate deiminase	NA	NA	NA	NA
WP_024912971.1\|3889888_3890644_+	histidine utilization repressor	NA	NA	NA	NA
WP_024912970.1\|3890786_3892007_+	imidazolonepropionase	NA	NA	NA	NA
WP_024912969.1\|3892003_3892807_+	N-formylglutamate deformylase	NA	NA	NA	NA
WP_024912968.1\|3892884_3893409_-	chorismate mutase	NA	NA	NA	NA
WP_024912967.1\|3893689_3893869_+	hypothetical protein	NA	NA	NA	NA
WP_024912966.1\|3894112_3895006_-	aromatic amino acid DMT transporter YddG	NA	NA	NA	NA
WP_024912965.1\|3895096_3896467_-	APC family permease	NA	NA	NA	NA
WP_024912964.1\|3896595_3898014_-	glutamine synthetase	NA	NA	NA	NA
WP_024912963.1\|3898279_3899041_+	gamma-glutamyl-gamma-aminobutyrate hydrolase	NA	NA	NA	NA
WP_024912962.1\|3899037_3899595_+	HTH-type transcriptional regulator PuuR	NA	NA	NA	NA
WP_024912961.1\|3899610_3901107_+	aldehyde dehydrogenase PuuC	NA	NA	NA	NA
WP_024912960.1\|3901117_3902398_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_024912959.1\|3903302_3903674_+	hypothetical protein	NA	NA	NA	NA
WP_024912958.1\|3904081_3905596_+	hypothetical protein	M1HLT6	Pelagibacter_phage	1.9e-61	32.7
WP_024912957.1\|3905810_3906269_+	hypothetical protein	NA	NA	NA	NA
WP_024912956.1\|3906262_3906589_+	DUF1493 family protein	NA	NA	NA	NA
WP_154666983.1\|3906631_3907980_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.4e-70	49.6
WP_162149751.1\|3908195_3909677_-	hypothetical protein	A6M964	Geobacillus_virus	4.8e-09	30.8
WP_024913286.1\|3910802_3911327_-	DUF1440 domain-containing protein	NA	NA	NA	NA
WP_024913284.1\|3912022_3913663_-	aromatic amino acid lyase	NA	NA	NA	NA
WP_081758459.1\|3913747_3914254_-	MFS transporter	Q6JIH2	Burkholderia_virus	1.5e-18	34.0
WP_154666984.1\|3915619_3915850_+	hypothetical protein	NA	NA	NA	NA
WP_024913281.1\|3916011_3917235_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_071882842.1\|3917427_3918177_-	hypothetical protein	NA	NA	NA	NA
WP_154666985.1\|3918349_3918709_-	hypothetical protein	NA	NA	NA	NA
WP_024913279.1\|3919208_3919505_-	hypothetical protein	NA	NA	NA	NA
WP_024913278.1\|3920512_3920809_-\|holin	phage holin family protein	G9L6E7	Escherichia_phage	9.0e-16	44.4
WP_024913277.1\|3920795_3921173_-	hypothetical protein	A0A1S5NRL1	Burkholderia_phage	4.1e-05	38.8
WP_024913276.1\|3921428_3921698_-	hypothetical protein	NA	NA	NA	NA
WP_024913275.1\|3921801_3922605_-\|protease	serine protease	Q6JKF3	Neodiprion_sertifer_nucleopolyhedrovirus	2.9e-16	30.5
WP_024913274.1\|3923471_3923720_+\|integrase	tyrosine-type recombinase/integrase	O21927	Phage_21	1.4e-25	69.1
3929823:3929837	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3987439 : 4032530

Escherichia_phage(18.18%)

integrase,capsid,transposase,terminase

attL 3978539:3978552|attR 3997805:3997818

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3978539:3978552	attL	NA	NA	NA	NA
WP_154666899.1\|3987439_3988548_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	4.8e-46	38.6
WP_024914520.1\|3988762_3989221_+	hypothetical protein	NA	NA	NA	NA
WP_037407808.1\|3989205_3989538_+	DUF1493 family protein	NA	NA	NA	NA
WP_154666938.1\|3989606_3990954_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.1e-71	50.4
WP_154666986.1\|3990995_3991559_-	hypothetical protein	W6ATR4	Escherichia_phage	7.2e-30	46.6
WP_024910318.1\|3991913_3992279_-	hypothetical protein	I6PCW3	Cronobacter_phage	2.5e-07	38.7
WP_154666987.1\|3992399_3992633_-	hypothetical protein	NA	NA	NA	NA
WP_081758388.1\|3992865_3993174_-	hypothetical protein	I6PD79	Cronobacter_phage	3.7e-20	66.2
WP_154666988.1\|3993170_3993281_-	hypothetical protein	G8C7Q5	Escherichia_phage	4.0e-06	77.4
WP_024910315.1\|3993326_3993689_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	6.6e-29	53.3
WP_037405530.1\|3993936_3994149_+	hypothetical protein	NA	NA	NA	NA
WP_024910314.1\|3994219_3994450_+	hypothetical protein	NA	NA	NA	NA
WP_024910313.1\|3994457_4001903_-	hypothetical protein	A0A1I9KFG8	Aeromonas_phage	1.2e-276	42.3
3997805:3997818	attR	NA	NA	NA	NA
WP_024910312.1\|4002670_4002934_+	hypothetical protein	NA	NA	NA	NA
WP_024910311.1\|4003019_4004351_-	hypothetical protein	A0A1I9KFD9	Aeromonas_phage	5.9e-14	27.5
WP_024910310.1\|4004360_4004621_-	hypothetical protein	NA	NA	NA	NA
WP_024910309.1\|4004620_4005007_-	hypothetical protein	A0A1I9KFD7	Aeromonas_phage	6.4e-14	39.2
WP_024910308.1\|4005015_4005696_-	hypothetical protein	A0A2R2Z361	Escherichia_phage	2.4e-43	57.1
WP_024910307.1\|4005703_4006075_-	hypothetical protein	A0A088CC37	Shigella_phage	1.7e-27	52.2
WP_024910306.1\|4006074_4007346_-	hypothetical protein	A0A088CC36	Shigella_phage	3.5e-32	46.5
WP_024910305.1\|4007342_4008968_-	hypothetical protein	A0A088CBK0	Shigella_phage	1.1e-163	53.2
WP_024910304.1\|4008975_4012305_-	hypothetical protein	A0A2H4JC17	uncultured_Caudovirales_phage	1.7e-14	24.2
WP_024910303.1\|4012301_4012961_-	hypothetical protein	Q08J85	Stx2-converting_phage	2.6e-55	49.3
WP_024910302.1\|4012961_4013558_-	hypothetical protein	A0A1I9KFD5	Aeromonas_phage	8.4e-29	37.3
WP_024910301.1\|4013557_4014040_-	hypothetical protein	A0A0P0ZG73	Escherichia_phage	3.2e-26	47.4
WP_024910300.1\|4014102_4014486_-	hypothetical protein	NA	NA	NA	NA
WP_024910299.1\|4014545_4015769_-\|capsid	N4-gp56 family major capsid protein	A0A088CC32	Shigella_phage	9.4e-176	74.6
WP_024910298.1\|4015833_4016901_-	hypothetical protein	A0A2L1IV47	Escherichia_phage	5.1e-53	38.7
WP_154666989.1\|4016950_4017112_+	hypothetical protein	NA	NA	NA	NA
WP_024910297.1\|4017170_4019294_-	hypothetical protein	V5URY3	Shigella_phage	4.9e-257	68.3
WP_167336768.1\|4019293_4020958_-\|terminase	terminase	A0A2R2Z350	Escherichia_phage	2.6e-245	73.1
WP_037405526.1\|4021005_4021869_-	hypothetical protein	A0A1I9KFG9	Aeromonas_phage	1.4e-37	45.7
WP_071882845.1\|4021942_4022500_-	hypothetical protein	A0A2I7QK91	Vibrio_phage	1.1e-35	46.4
WP_024910293.1\|4022496_4023039_-	DUF2570 domain-containing protein	H9C185	Pectobacterium_phage	7.2e-19	45.3
WP_024910292.1\|4023171_4023714_-	lysozyme	A0A0M3LQY4	Mannheimia_phage	2.7e-26	36.8
WP_024910291.1\|4023710_4023944_-	hypothetical protein	NA	NA	NA	NA
WP_024910290.1\|4024090_4024483_-	hypothetical protein	NA	NA	NA	NA
WP_024910289.1\|4024525_4025341_-	hypothetical protein	NA	NA	NA	NA
WP_024910288.1\|4025344_4025788_-	VRR-NUC domain-containing protein	M4SRS1	Psychrobacter_phage	8.5e-10	28.7
WP_024910287.1\|4025780_4026113_-	DUF1364 domain-containing protein	A0A223LHA7	Pseudoalteromonas_phage	5.5e-14	42.9
WP_024910286.1\|4026105_4026531_-	hypothetical protein	NA	NA	NA	NA
WP_024910285.1\|4026541_4027213_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	1.6e-20	29.3
WP_024910284.1\|4027209_4029192_-	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	1.4e-221	56.8
WP_024910283.1\|4029188_4030583_-	site-specific DNA-methyltransferase	A0A1P8DTZ3	Salmonella_phage	3.0e-93	49.7
WP_024910282.1\|4030579_4030825_-	hypothetical protein	NA	NA	NA	NA
WP_024910281.1\|4030821_4031961_-	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	1.8e-96	60.4
WP_162149736.1\|4031957_4032530_-	hypothetical protein	A0A2H4J1B6	uncultured_Caudovirales_phage	6.6e-07	29.3

DBSCAN-SWA_8

4037453 : 4052875

Vibrio_phage(18.75%)

integrase

attL 4048769:4048781|attR 4054141:4054153

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037405553.1\|4037453_4038053_+	hypothetical protein	V5URU3	Shigella_phage	3.2e-36	40.3
WP_024910270.1\|4038238_4038991_+	methyltransferase	M4M9L8	Vibrio_phage	1.4e-28	44.4
WP_024910269.1\|4039099_4039378_+	hypothetical protein	NA	NA	NA	NA
WP_024910268.1\|4039661_4039925_+	KTSC domain-containing protein	A9YWW2	Burkholderia_phage	4.8e-13	51.3
WP_024910267.1\|4039989_4040322_+	hypothetical protein	NA	NA	NA	NA
WP_154666990.1\|4040466_4040625_+	hypothetical protein	NA	NA	NA	NA
WP_024910266.1\|4040621_4041455_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	2.6e-68	61.0
WP_024910265.1\|4041441_4043028_+	hypothetical protein	A0A2H4J6P1	uncultured_Caudovirales_phage	2.5e-112	52.1
WP_024910264.1\|4043068_4044223_+	hypothetical protein	M4MHC3	Vibrio_phage	8.6e-30	35.8
WP_024910263.1\|4044224_4044647_+	hypothetical protein	NA	NA	NA	NA
WP_024910262.1\|4044673_4045480_+	hypothetical protein	A0A248SL66	Klebsiella_phage	4.4e-49	40.5
WP_024910261.1\|4045489_4045762_+	hypothetical protein	NA	NA	NA	NA
WP_024910260.1\|4045751_4045985_+	hypothetical protein	H2DE70	Erwinia_phage	4.7e-20	62.3
WP_154666991.1\|4045981_4046491_+	hypothetical protein	O64349	Escherichia_phage	3.0e-43	53.0
WP_024910258.1\|4046487_4047012_+	hypothetical protein	A0A248SL95	Klebsiella_phage	2.4e-43	46.7
WP_024910257.1\|4047008_4047221_+	hypothetical protein	NA	NA	NA	NA
WP_154666992.1\|4047229_4047580_+	hypothetical protein	I3PV00	Vibrio_phage	3.2e-20	46.4
WP_024910255.1\|4047964_4048657_+	hypothetical protein	R9VWB9	Serratia_phage	4.5e-42	46.2
WP_024910254.1\|4048653_4049223_+	hypothetical protein	NA	NA	NA	NA
4048769:4048781	attL	NA	NA	NA	NA
WP_024910253.1\|4049215_4050046_+	DNA adenine methylase	Q5QF26	Pseudomonas_virus	1.4e-69	51.1
WP_024910252.1\|4050055_4050574_+	hypothetical protein	Q7Y3W7	Yersinia_phage	6.3e-49	50.0
WP_024910251.1\|4051545_4051815_+	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	5.0e-13	40.0
WP_024910250.1\|4051789_4052875_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	4.5e-105	54.7
4054141:4054153	attR	NA	NA	NA	NA

DBSCAN-SWA_9

4277816 : 4290779

Escherichia_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024911908.1\|4277816_4280099_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	3.9e-159	41.5
WP_024911907.1\|4280397_4281138_+	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	1.4e-20	27.4
WP_024911906.1\|4281188_4282331_-	MFS transporter	NA	NA	NA	NA
WP_024911905.1\|4282481_4283048_-	ferredoxin-type protein NapF	NA	NA	NA	NA
WP_024911904.1\|4283047_4283656_-	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	2.0e-22	37.9
WP_024911903.1\|4283702_4284563_-	dimethyl sulfoxide reductase anchor subunit family protein	A0A077SK59	Escherichia_phage	2.4e-24	35.1
WP_024911902.1\|4284564_4285182_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	6.6e-77	59.6
WP_024911901.1\|4285192_4287646_-	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	7.1e-223	51.1
WP_024911900.1\|4288032_4289325_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.6e-93	53.4
WP_024911899.1\|4289435_4290779_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	2.6e-78	39.4

DBSCAN-SWA_10

5075606 : 5088780

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024910454.1\|5075606_5080187_-	response regulator	A0A1V0SGX0	Hokovirus	8.4e-60	26.3
WP_081758391.1\|5080829_5081132_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_045784810.1\|5081422_5082130_-	hypothetical protein	A0A2H4UUT1	Bodo_saltans_virus	4.1e-22	31.7
WP_024910453.1\|5083151_5085707_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	5.6e-29	20.4
WP_024910452.1\|5085779_5086778_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.0e-31	36.9
WP_024910451.1\|5086831_5087821_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	4.0e-07	37.5
WP_024910450.1\|5088153_5088780_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	7.0e-34	47.0

DBSCAN-SWA_11

5105776 : 5121717

Salmonella_phage(55.56%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024910430.1\|5105776_5106655_-	hypothetical protein	A9YX14	Burkholderia_phage	1.4e-11	44.2
WP_024910429.1\|5106671_5107262_-\|tail	tail fiber assembly protein	E5G6P1	Salmonella_phage	8.3e-29	39.8
WP_024910428.1\|5107261_5107975_-\|tail	tail fiber protein	K7P7Q7	Enterobacteria_phage	3.8e-36	48.3
WP_024910427.1\|5107967_5108636_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	5.0e-46	44.8
WP_162149738.1\|5108632_5109814_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	1.9e-117	56.2
WP_024910425.1\|5109813_5110167_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	5.0e-37	61.5
WP_037405607.1\|5110166_5110922_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	6.8e-60	53.0
WP_024910423.1\|5110911_5111862_-	hypothetical protein	A0A0M4QX01	Salmonella_phage	1.0e-68	42.0
WP_024910422.1\|5111900_5112200_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	1.4e-16	48.4
WP_024910421.1\|5112196_5112832_-	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	9.9e-44	53.3
WP_024910420.1\|5112831_5114430_-	hypothetical protein	NA	NA	NA	NA
WP_024910419.1\|5114692_5115091_-	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	1.3e-30	51.1
WP_024910418.1\|5115093_5115534_-	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	4.1e-49	62.3
WP_024910417.1\|5115549_5117022_-	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	4.1e-133	50.8
WP_024910416.1\|5117026_5117620_-	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.4e-44	50.3
WP_024910415.1\|5117597_5117999_-	hypothetical protein	A0A0M3ULK0	Salmonella_phage	1.9e-40	65.1
WP_024910414.1\|5118071_5118482_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	1.6e-39	60.4
WP_024910413.1\|5118484_5118709_-	hypothetical protein	NA	NA	NA	NA
WP_024910412.1\|5118738_5120079_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.9e-129	51.4
WP_024910411.1\|5120505_5120865_-	hypothetical protein	NA	NA	NA	NA
WP_024910410.1\|5121006_5121717_+	helix-turn-helix transcriptional regulator	A0A2H4FNG6	Salmonella_phage	6.5e-28	36.2

DBSCAN-SWA_12

5432421 : 5459462

uncultured_virus(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025297200.1\|5432421_5433630_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	3.0e-49	48.4
WP_154667023.1\|5435230_5436374_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.1e-48	41.2
WP_024912040.1\|5436556_5436841_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_081758433.1\|5436837_5437692_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.0e-80	56.2
WP_024912169.1\|5438102_5440178_+	AAA domain-containing protein	K4I1H4	Acidithiobacillus_phage	7.7e-37	34.2
WP_024912170.1\|5440170_5441514_+	McrC family protein	NA	NA	NA	NA
WP_037406385.1\|5441510_5441897_+	hypothetical protein	NA	NA	NA	NA
WP_024912171.1\|5441946_5444100_+	N-6 DNA methylase	B3GAM1	uncultured_virus	5.7e-19	42.3
WP_024912172.1\|5444099_5445641_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_024912173.1\|5445658_5446945_+	hypothetical protein	NA	NA	NA	NA
WP_024912174.1\|5446941_5451228_+	hypothetical protein	NA	NA	NA	NA
WP_024912175.1\|5451238_5452090_+	hypothetical protein	NA	NA	NA	NA
WP_024912176.1\|5452092_5453250_+	hypothetical protein	NA	NA	NA	NA
WP_024912177.1\|5453239_5454925_+	ATP-binding protein	NA	NA	NA	NA
WP_024912178.1\|5455061_5455475_+	hypothetical protein	NA	NA	NA	NA
WP_024912179.1\|5455471_5456941_+	serine/threonine protein kinase	A0A2K9L5Y0	Tupanvirus	3.0e-11	26.5
WP_071882818.1\|5457231_5457534_+\|transposase	transposase	NA	NA	NA	NA
WP_024914513.1\|5457527_5457863_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_024914512.1\|5457929_5459462_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	3.6e-92	43.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP007044

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection