CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP006942	Mannheimia sp. USDA-ARS-USMARC-1261 chromosome, complete genome	1 crisprs	cas2,cas3,DEDDh,DinG,WYL,cas9,cas1,PD-DExK	0	6	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP006942_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006942_1

1932874-1933371

TypeII

Consensus_repeat	Method
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	PILER-CR
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	CRISPRCasFinder
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	CRT

7 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP006942_1

>merge|NZ_CP006942|1|1932874-1933371|PILER-CR,CRISPRCasFinder,CRT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTCAAAACTATCTAATATAACTTGCCAATCTATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACGTCGCACAACAACGAGCGTTATTGAGAAAAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTTCATCGCCTTGTATGCCAACCTTGATTTCATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACGTTGCCGTTGTTATAATCATCACGCACAAAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTGTGGCAAGCGAATTATCTAGAGGTTGTGAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTTCAACGAATAAATGGGCTGATGTTTGTCGATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACAAGAGCTAAATCGCAAAATCTTTACCGAAGATTGTAGCACTGCGAAATGAGAAACACTCACCTCAA

>NZ_CP006942|1|1|1932874-1933305|PILER-CR
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TCAAAACTATCTAATATAACTTGCCAATCT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	GTCGCACAACAACGAGCGTTATTGAGAAAA
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TTCATCGCCTTGTATGCCAACCTTGATTTC
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	GTTGCCGTTGTTATAATCATCACGCACAAA
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TGTGGCAAGCGAATTATCTAGAGGTTGTGA
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TTCAACGAATAAATGGGCTGATGTTTGTCG
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC

>NZ_CP006942|1|1|1932874-1933371|CRISPRCasFinder
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TCAAAACTATCTAATATAACTTGCCAATCT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	GTCGCACAACAACGAGCGTTATTGAGAAAA
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TTCATCGCCTTGTATGCCAACCTTGATTTC
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	GTTGCCGTTGTTATAATCATCACGCACAAA
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TGTGGCAAGCGAATTATCTAGAGGTTGTGA
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TTCAACGAATAAATGGGCTGATGTTTGTCG
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	AAGAGCTAAATCGCAAAATCTTTACCGAAG
ATTGTAGCACTGCGAAATGAGAAACACTCACCTCAA

>NZ_CP006942|1|1|1932874-1933371|CRT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TCAAAACTATCTAATATAACTTGCCAATCT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	GTCGCACAACAACGAGCGTTATTGAGAAAA
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TTCATCGCCTTGTATGCCAACCTTGATTTC
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	GTTGCCGTTGTTATAATCATCACGCACAAA
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TGTGGCAAGCGAATTATCTAGAGGTTGTGA
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TTCAACGAATAAATGGGCTGATGTTTGTCG
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	AAGAGCTAAATCGCAAAATCTTTACCGAAG
ATTGTAGCACTGCGAAATGAGAAACACTCACCTCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006942.1\|WP_025236604.1\|1919937_1920357_-\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|377540
NZ_CP006942.1\|WP_025236618.1\|1940346_1940622_-\|deoxyribose-phosphate-aldolase	unknown	unknown	unknown
NZ_CP006942.1\|WP_025236606.1\|1921393_1921810_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341122
NZ_CP006942.1\|WP_025236607.1\|1921802_1921988_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006942.1\|WP_025236614.1\|1935389_1935641_+\|oxaloacetate-decarboxylase-subunit-gamma	unknown	unknown	gnl\|CDD\|235086
NZ_CP006942.1\|WP_025236609.1\|1928185_1931329_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_CP006942.1\|WP_081732117.1\|1941142_1941742_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|368781
NZ_CP006942.1\|WP_025236613.1\|1934394_1935207_+\|DNA-ligase	unknown	unknown	gnl\|CDD\|181662
NZ_CP006942.1\|WP_025236619.1\|1940652_1941117_-\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|225675
NZ_CP006942.1\|WP_025236621.1\|1941775_1943503_+\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223097
NZ_CP006942.1\|WP_025236605.1\|1920360_1921191_-\|ZIP-family-metal-transporter	unknown	unknown	gnl\|CDD\|223505
NZ_CP006942.1\|WP_025236617.1\|1939075_1940266_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP006942.1\|WP_025236612.1\|1933457_1934282_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006942.1\|WP_025236616.1\|1937488_1938793_+\|sodium-ion-translocating-decarboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|185373
NZ_CP006942.1\|WP_025236603.1\|1919324_1919936_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NZ_CP006942.1\|WP_025236615.1\|1935673_1937479_+\|sodium-extruding-oxaloacetate-decarboxylase-subunit-alpha	unknown	unknown	gnl\|CDD\|237592
NZ_CP006942.1\|WP_025236599.1\|1915349_1916495_+\|acetylornithine-deacetylase	unknown	unknown	gnl\|CDD\|235346
NZ_CP006942.1\|WP_038644018.1\|1932291_1932618_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP006942.1\|WP_025236610.1\|1931384_1932299_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP006942.1\|WP_025236602.1\|1918884_1919310_-\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876

Protein	Function_ID	Function_description	E-value
NZ_CP006942.1\|WP_025236604.1\|1919937_1920357_-\|DUF805-domain-containing-protein	gnl\|CDD\|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	5.63147e-13
NZ_CP006942.1\|WP_025236606.1\|1921393_1921810_-\|hypothetical-protein	gnl\|CDD\|341122	cd17511, YbjN_AmyR-like, YbjN protein family is structurally similar to type III secretion system chaperones. This YbjN protein family includes Escherichia coli YbjN, Erwinia amylovora AmyR, and similar proteins. YbjN proteins share a class I type III secretion chaperone (T3SC)-like fold with type III secretion system (T3SS) chaperone proteins but appear to function independently of the T3SS. YbjN is an enterobacteria-specific protein. In E. coli, it acts as a sensory transduction regulator that may play important roles in regulating bacterial multicellular behavior, metabolism, and survival under stress conditions. E. amylovora AmyR, a functionally conserved ortholog of E. coli YbjN, is a stress and virulence associated protein that regulates the ams operon. Ams proteins are required for amylovoran biosynthesis. AmyR may also regulate the Rcs phosphorelay system, an atypical two-component signal transduction (TCST) system present only in Enterobacteriaceae and positively regulates amylovoran biosynthesis by activating the ams operon transcription.	4.05583e-06
NZ_CP006942.1\|WP_025236602.1\|1918884_1919310_-\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	1.3786e-56
NZ_CP006942.1\|WP_025236614.1\|1935389_1935641_+\|oxaloacetate-decarboxylase-subunit-gamma	gnl\|CDD\|235086	PRK02919, PRK02919, oxaloacetate decarboxylase subunit gamma; Provisional.	1.12891e-39
NZ_CP006942.1\|WP_025236609.1\|1928185_1931329_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP006942.1\|WP_081732117.1\|1941142_1941742_-\|VOC-family-protein	gnl\|CDD\|368781	pfam06185, YecM, YecM protein. This family consists of several bacterial YecM proteins of unknown function.	2.93057e-90
NZ_CP006942.1\|WP_025236613.1\|1934394_1935207_+\|DNA-ligase	gnl\|CDD\|181662	PRK09125, PRK09125, DNA ligase; Provisional.	1.79563e-157
NZ_CP006942.1\|WP_025236619.1\|1940652_1941117_-\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|225675	COG3133, SlyB, Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane].	4.853e-51
NZ_CP006942.1\|WP_025236621.1\|1941775_1943503_+\|arginine--tRNA-ligase	gnl\|CDD\|223097	COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	0
NZ_CP006942.1\|WP_025236605.1\|1920360_1921191_-\|ZIP-family-metal-transporter	gnl\|CDD\|223505	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism].	1.54355e-57
NZ_CP006942.1\|WP_025236617.1\|1939075_1940266_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP006942.1\|WP_025236603.1\|1919324_1919936_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	1.7773e-119
NZ_CP006942.1\|WP_025236615.1\|1935673_1937479_+\|sodium-extruding-oxaloacetate-decarboxylase-subunit-alpha	gnl\|CDD\|237592	PRK14040, PRK14040, oxaloacetate decarboxylase subunit alpha.	0
NZ_CP006942.1\|WP_025236599.1\|1915349_1916495_+\|acetylornithine-deacetylase	gnl\|CDD\|235346	PRK05111, PRK05111, acetylornithine deacetylase; Provisional.	0
NZ_CP006942.1\|WP_038644018.1\|1932291_1932618_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.18945e-54
NZ_CP006942.1\|WP_025236610.1\|1931384_1932299_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	3.23794e-137
NZ_CP006942.1\|WP_025236616.1\|1937488_1938793_+\|sodium-ion-translocating-decarboxylase-subunit-beta	gnl\|CDD\|185373	PRK15476, PRK15476, oxaloacetate decarboxylase subunit beta; Provisional.	0

>NZ_CP006942.1|WP_038644018.1|1932291_1932618_+|CRISPR-associated-endonuclease-Cas2
MSEATFMRIIVFFDLPVTTKAKRRAASQFRQFLLKDGYQMLQLSVYTRIVRGRDSLEKHNKRLTQHLPEEGSVRCLEVTEKQFTSMLLLVGELKPQEEKVNANQMLLF
>NZ_CP006942.1|WP_025236610.1|1931384_1932299_+|type-II-CRISPR-associated-endonuclease-Cas1
MSWRSILISKGGKLSLRQNQMVIWQEEQEFCVPLEDIAVIVIESREVVITTPLLSALALNGITLLTCDEQFIPCGQWLPFGQYHRQLKTLKLQLEMSQPLKKQLWQAIVQQKIRNQAFVLSQTKRSDMAEKLQNMAKRVKSGDKENLEAQAALLYFQTAFGKDFRRWQENAINAHLNYAYTVLRSAVARSLVLYGWLPTLGIFHHSELNPFNLADDFIEPFRPLVDLQVWDLWRQEKLSDSLTPHTKQKLVGLLHYQLRFQDQTFSTLAAIDRTVGSFQAAVAQRDPSLLKLPKILPLKEHHYE
>NZ_CP006942.1|WP_025236609.1|1928185_1931329_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKLLRYILGLDLGIASVGWAIVEIDENDFPIRLIDIGVRTFDKAEVSKTGESLALARRLARSTRRLIRRRAFRLLKGKRLLKQHNVINKEALTTLPTDCWALRVKGLDERLSPTEWSAVLLHLLKHRGYLSQRKNEAKSADKEMGALLSGVASNHQLLVENQFRTPAEIAVKKFALEEGHIRNQLGAYTHTFNRLDLLAEMKLLFQTQRELGNPHTSGQLEQEFCELLMWQKPALSGDAILKMLGKCTFETNEYKAAKHSYTAERFVWLTKLNNLRILEHGSERVLNTDERSLLLNQPYEKAKLTYTQVRKLLGLSEEARFNGVRYGKEKAEDATLIELKAYHAIRKAVEKADKSAWETLKNQTALLDEIGTTFSIYKTDDDITEQLNGKLSDTVLNALLENLNFDKFIQLSLKSLYNIVPLMEQGLRYDEACQQIYGDHFGKKSGEINRLLPPIPADEIRNPVVLRSLTQARKVINAVIRLYGSPARIHIETARELGKSYKDRKEIEKRQEQNRAEREKATAQFKTLFPTFIGEPKGKDILMMRLYEQQNGQCLYSGKPLNLNRLLEKGYVEIDHSLPFSRTWDDSQNNKVLVLAGENQNKGNQTPFEWLGKDEHQWALFVARVNGCRFPYAKKQRILTQKLDEQGFIERNLNDTRYIARFLVNFVRENLHLTGKGKNRVFASNGQITAFLRGRWGLSKVREESDRHHALDAVVVACSTVAMQQKITRFVKYQEGNLQTAERIDRETGEIIPLHFPDPWHFFRQEVMIRIFSENPQEDLIIQLPDRPEANHEFVQPLFVSRMPTRKMSGQGHMETIKSAKRLDEGISVSKVPLTQLKLKDLDNMVNREREKALYEALKARLNAFNDDPTKAFAEPFYKKGGQQVKAVRVEQVQKSGVVVRNGNGVADNASMVRVDVFIKGGKYFLVPIYTWQVAKGILPDRAVVAAKDESEWELMDKTAQFLFSMFPNDLIQVKTKKETFFGYYNGLDRATGAINLKEPDSNINKGKSGLHRSIGVKTALSVEKYQVDELGKNIRPCRPSKRQAVR
>NZ_CP006942.1|WP_025236607.1|1921802_1921988_-|hypothetical-protein
MLIMKFENGKRFYTDNIGNKYQYDLTDPSDQLSYKIDVDAQMRDQLSLNLTRDKNGGGIYE
>NZ_CP006942.1|WP_025236606.1|1921393_1921810_-|hypothetical-protein
MSSSYEEVFDEFTDRQLVSILEEADYENVRIVKRGLIAFTRDGMNYLISNGYDDGSIEIFMAFSDIDISFKEMNEWNCEKRFVTVYKNDDGKVCLKMSLESGMTEAYLLKSINRFITVQKIFSLSRLGGLASLLKMFK
>NZ_CP006942.1|WP_025236605.1|1920360_1921191_-|ZIP-family-metal-transporter
MFEYFLSLSPVWQAFLAGLFTWGCTILGSSFVYFFRSVNRKLLDSMMGFAAGVMIAASFWSLLSPSLDYAEADYGELAWLPAAIGFLAGGAFIRLIDYIVPHLHLSKPIEQAEGNKQLTKGLSKTTLLFLAITIHNIPEGLAIGVTFGALASQMASVDASIMGAIGLAIGIGLQNIPEGSSLALPIRAEGHSRKKAFWYGAMSAAVEPIAAVIGAIFVLSMTAILPYALAFAAGAMIFVVVEELIPESQSNGHTDIATLSLMLGFVVMMILDVALG
>NZ_CP006942.1|WP_025236604.1|1919937_1920357_-|DUF805-domain-containing-protein
MIWYNALFGFKGRLNRQGFWIGFLINFIFLLIVAVFMTDLTNLTFLSFLPLWISVFSLSSIIVKRLHDRDRSGKALLMVLVPIICYLASAYTQGIMKVLLGNVMPAFIAMILFLEWGIFKGNSNPNQYGERGLSFKLRE
>NZ_CP006942.1|WP_025236603.1|1919324_1919936_-|YihA-family-ribosome-biogenesis-GTP-binding-protein
MKLNYHKTHFLTSAPDIRHLPEDIGVEIAFAGRSNAGKSTALNALTNQKSLARTSKTPGRTQLINLFEVEPNCKLVDLPGYGYAAVPEQMKIQWQKALGEYLQKRECLGGVVILMDIRHPLKDLDQQMIEWAVSADLPVLLLLTKADKLSQSARSKQVKMVREAILPFQGDIQVEAYSALNKIGVDKLSAKLDSWFAPILTEE
>NZ_CP006942.1|WP_025236602.1|1918884_1919310_-|ribonuclease-E-inhibitor-RraB
MYNLEELRSETDEIIENLLKDGSDPDALYIIEHHVAHRDFDKLEKLVVDAYKLGYEISEAEEVEEENGKVIFVCDIVSEINLNAELITAQQKELLPLIEKAGAEYEGWGTYFEDPNADDDEYGDDGEFFDEDDDFDEEACH
>NZ_CP006942.1|WP_025236599.1|1915349_1916495_+|acetylornithine-deacetylase
MKHNIPFINRYAQLIELPTISSLVAENDLSNRALIELLATWLADFGFKTDILAVEGSRNKYNLLATYGEGEGGLLLAGHTDTVPFDDGKWTFNPFKLTEKEGKLYGLGTADMKGFFAFVVEVVSQIDLSQIKKPIRILATADEETTMLGAKTFAQHTHIRPDCAIIGEPTSLKPIRAHKGHMGESVRITGKSGHSSDPSKGINAIELMHESIGYLMKMRDDLKEKYHNPLFQVTHPTMNFGNIRGGDAINRICACCELQFDMRPLPNMPLADLYAMVDEYLKPMLEQYGDLIDIRPIHDGIPGYECEHSAQIVQVVEKLLGEKCDAVNYCTEAPFIQQLCPTLVLGPGSIEQAHQPNEFLEMKYIEPTKELLTKLIYHFCR
>NZ_CP006942.1|WP_025236612.1|1933457_1934282_+|hypothetical-protein
MEHFIGLGVAGNFAGHLEQAGEAADFVKVKTVEAVQPKAIFPFYVPAENLGDYQFLSTYPLSNTAINFPTDADNLQIEPEVALICTIGYQDNQVVSLTPTHFAAYNDCSIRRPNANKICEKKNWGASSKGLSATLLELDNFNEGSTLDNYNIACFHKRNGELNAYGIDSPAVEYSYFHQKLLDWIVDRMNNQPDEGPMNNIAEMLKQANYPAKAIISIGATRYTPFGETNFLQVGDMSIVVVYNAKKYTHSQIEEMAKLETFSEDISALIQTVR
>NZ_CP006942.1|WP_025236613.1|1934394_1935207_+|DNA-ligase
MKKILFLLLLCSSLFAKSPDLMLLGQYKDQDITGWVMSEKLDGVRGFWDGKQLISRQGYSLNPPDYFVKDFPPFAIDGELFSERGKFEEISATVRSAEPKGWYKLKLHVFDVPNATGNLFERLSSLQKYLNQHPNAHIEIIPQIPIQDKAHLQQFYQDILAKGGEGVVVRNPNAEYIQGRSAQILKIKPVLDEECTVTAHHKGKGKYADKLGAVSCENHRGRFRIGSGFKDKERENPPPIGSTITYKYRGLTESGKPRFATFLRVREPAE
>NZ_CP006942.1|WP_025236614.1|1935389_1935641_+|oxaloacetate-decarboxylase-subunit-gamma
MTNAELFSEGLNLMFAGMGFVIFFLLALIYAISFISSLINRYFPEPIPSPTPKTIQPAVDDLERLRPVIAAAIAHHRRMKGQN
>NZ_CP006942.1|WP_025236615.1|1935673_1937479_+|sodium-extruding-oxaloacetate-decarboxylase-subunit-alpha
MTTQPKKIAITDVVLRDAHQSLFATRLRLDDMLPIAAELDKIGYWSLETWGGATFDSCIRFLGEDPWVRLRELKKAMPKTPMQMLLRGQNLLGYRHYADDVVDKFVERSVANGMSVFRVFDALNDPRNMQAALQAVKKHGGHAQGTLSYTTSPVHTLETWLDVTEQLLEIGVDSLVIKDMSGILTPMAAYELVSEIKKRYDVELHLHCHSTTGMAEMALLKAIEAGVDGVDTSISSMSGTYGHPATESIVATLQGTPYDTGLNIPELEKISAYFRDVRKKYAKFEGQLRGVDSRILVAQVPGGMLTNLESQLKQQNASDKLDLVLQEIPRVREDLGNIPLVTPTSQIVGTQAVMNVLMGERYKTIAKETAGILKGEYGRTPAPVNKTLQERVLEGATPITDRPADHIPPELDKLVAEVTAQAKEKGISLSENSIDDVLIVALFQQIGWKYLENRNNPSAFEPVPSADDVKAAPAAAPKAQAQSGSAVYTVELEGKAFVVKVSEGGDITNIAPTTAPTPAPQAVNSAQKPANAEPVNAPMAGNILKVEVKEGQQVAEGDVLLILEAMKMETQICAAKSGTIQGINVKQGDVVAVNDTLMSIA
>NZ_CP006942.1|WP_025236616.1|1937488_1938793_+|sodium-ion-translocating-decarboxylase-subunit-beta
MEGIIALFKGMGIMHLEWGQAVMIAVSVLLLWLAIARKFEPLLLVPIGFGGLMSNIPEAGLAMTALDNLLHSGTAEQLAIIAAKVNSTSLDVHAIKDAIALAAPSVQNELEIMAGDMGYTAGVLALFYKVAIGYGVAPLIIFMGVGAMTDFGPLLANPRMLLLGAAAQFGIFATVLGALGLNWLGLIDFTLPQAAAIGIIGGADGPTAIYLASKLAPELLGAIAVAAYSYMALVPLIQPPIMKALTTEQERKIRMTQLRNVSNREKIIFPIVLLLLVALLLPDAAPLLGMFCFGNLLRTSGVVERLNDTAQNALINIVTIFLGLSVGAKLVADKFLQPQTLGILVLGVIAFGIGTASGVIMAKIMNRFSKHKINPLIGSAGVSAVPMAARVSNKIGQEYDKQNFLLMHAMGPNVAGVIGSAIAAGVMLKYIANM
>NZ_CP006942.1|WP_025236617.1|1939075_1940266_+|tyrosine--tRNA-ligase
MTQSIESTLAELKRGVENIYSEEDLIAKLKENRPLRIKLGADPTAPDIHLGHTVVLNKLRQFQQFGHEVYFLIGDFTGMVGDPSGKNSTRPPLSREDVLRNAETYKEQIFKILDLQKTKIVFNSDWLGKLGTEGMIRLASNYTVARMLEREDFKNRFTNQQPIAIHEFIYPLLQGHDSVELKADVELGGTDQTFNLLVGRELQKSAGQKPQVAMTLPLLVGLDGEKKMSKSLGNYIGVTEAPNEMFGKIMSISDDLMWDWYNLLSFRPLDEIAQLKADVANGKNPRDVKILLAKEIIARFHDEAAADAAEQEFINRFQKGAIPDEMPEFTFEGEIGLAALLKEAGLVPSTSEAIRSAQQGGVKIDGEKVEDMKQNAQKGTFVYQVGKRKFARITVK
>NZ_CP006942.1|WP_025236618.1|1940346_1940622_-|deoxyribose-phosphate-aldolase
MKKLSLAVLATFALAACTADVYSDKGNATVLSSKEVSPEVVELTIQRDNGEVVTLTREYDAHAAVGARIHLADEIQKQDSDVKTIRRYEFK
>NZ_CP006942.1|WP_025236619.1|1940652_1941117_-|glycine-zipper-2TM-domain-containing-protein
MKKLALAAALMSSFVLVGCANTDIYSGSVYSGSQAKEARSISYGTILSVRDVKIQADSQGVIGTVGGGVLGGIAGSGVGGGTGQAIATAVGAIAGSVIGSQVEQKASQVSSLEMVIRKDDGKEIVVVQKKEDGFVPGKRVRIVGSNSDLNVSLL
>NZ_CP006942.1|WP_081732117.1|1941142_1941742_-|VOC-family-protein
MDKIIAENAKFFEKMTACFGDLSQFEQKIQQIADIASIDLSLYQIDHLAVRMNQHETAEQWKSLLLEGASLLKESEVNGRPIGLFTLDQAVKFCGQNVKIVELPFPKDKVYPEEGWEHIEVVFPILADENAEQWVERALSHFGLVENSNLKLKISQPKVEGERLPNPSIAMSLRNVTFCNLCCLKLHPYDINNIIMSEM
>NZ_CP006942.1|WP_025236621.1|1941775_1943503_+|arginine--tRNA-ligase
MNIQQILSDKIKQAMIAAGADENVEPLVRQSGKPEFGDYQANGAMGAAKKLGMNPREFAQKILDNADLNGVADKLEIAGPGFINIFLNQKWLAQNANSALQAVNFGIKTANPQTIVIDYSSPNVAKEMHVGHLRSTIIGDAVVRTLKFLGNNVIRANHVGDWGTQFGMLIAYLEKMENEHASEMELSDLEAFYRAAKEHYDSDEVFAEKARNYVVKLQSGDKYCLTMWKKLVDITMHHNQENYNRLNVTLTEKDVMGESLYNPMLPEIVADLKARGLAVEDDGALVVFLDEFKNKDGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRALVFSDSRQAQHMQQAWLITRKAGYVPEGFSLEHPFFGMMLGKDGKPFKTRSGGTVKLKDLLDEAVERADKLISERSTDLTAEEKAAVVEAVAIGSVKYSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRIRSIFARAGINADSLNAKIQLSEDKERTLAVKLLQFEEALNGVAKDGMPHILCQYLYELAGTFSSFYEACPILNAEENVKNSRLALAALTAKTLKQGLDLLGIKTVEKM

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP006942_1	1.1\|1932910\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1932910-1932939	30	MN692981	Marine virus AFVG_117M36, complete genome	859-888	5	0.833
NZ_CP006942_1	1.6\|1933240\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1933240-1933269	30	MF417947	Uncultured Caudovirales phage clone 3F_8, partial genome	3013-3042	5	0.833
NZ_CP006942_1	1.1\|1932910\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1932910-1932939	30	NZ_CP048628	Megamonas funiformis strain JCM 14723 plasmid putative_Mfuni1, complete sequence	37563-37592	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP011282	Enterococcus faecium strain E39 plasmid p1, complete sequence	142173-142202	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP025426	Enterococcus faecium strain SC4 plasmid p1, complete sequence	71127-71156	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	LT603679	Enterococcus faecium isolate Ef_DMG1500501 genome assembly, plasmid: 2	45615-45644	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP018832	Enterococcus faecium strain ISMMS_VRE_9 plasmid p1_ISMMS_VRE9, complete sequence	233406-233435	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP040369	Enterococcus faecium strain VB3240 plasmid unnamed1, complete sequence	163051-163080	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP020485	Enterococcus faecium strain CFSAN059070 plasmid unnamed1, complete sequence	188021-188050	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP013995	Enterococcus faecium strain 6E6 plasmid unnamed1, complete sequence	196311-196340	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP027518	Enterococcus faecium strain AUSMDU00004024 plasmid unnamed1, complete sequence	91925-91954	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP027498	Enterococcus faecium strain AUSMDU00004167 plasmid unnamed1, complete sequence	44169-44198	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP027507	Enterococcus faecium strain AUSMDU00004055 plasmid unnamed1, complete sequence	122261-122290	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP027502	Enterococcus faecium strain AUSMDU00004142 plasmid unnamed1, complete sequence	160182-160211	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_LR135288	Enterococcus faecium isolate E7199 plasmid 2	195278-195307	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP025756	Enterococcus faecium strain AALTL plasmid pEFA-99d7, complete sequence	116214-116243	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_LR135279	Enterococcus faecium isolate E6975 plasmid 2	135851-135880	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP019209	Enterococcus faecium strain 2014-VREF-41 plasmid p41-1, complete sequence	113788-113817	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP019989	Enterococcus faecium isolate 2014-VREF-63 plasmid p63-1, complete sequence	206608-206637	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP017798	Enterococcus faecium strain E243 plasmid unnamed1, complete sequence	161210-161239	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_LR135476	Enterococcus faecium isolate E8423 plasmid 2	93774-93803	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_LR135352	Enterococcus faecium isolate E8014 plasmid 2	91928-91957	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP017793	Enterococcus faecium strain E240 plasmid unnamed1, complete sequence	159526-159555	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP019993	Enterococcus faecium isolate 2014-VREF-268 plasmid p268-1, complete sequence	214683-214712	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP035655	Enterococcus faecium strain UAMSEF_08 plasmid unnamed1, complete sequence	136458-136487	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP023790	Enterococcus faecium strain Efaecium_ER04462.3A plasmid pER04462.3A.1, complete sequence	188801-188830	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP023800	Enterococcus faecium strain Efaecium_ER04526.5A plasmid pER04526.5A.1, complete sequence	192273-192302	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP035661	Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence	130089-130118	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP035667	Enterococcus faecium strain UAMSEF_20 plasmid unnamed1, complete sequence	129975-130004	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP035649	Enterococcus faecium strain UAMSEF_01 plasmid unnamed1, complete sequence	136459-136488	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP040237	Enterococcus faecium strain VB3025 plasmid unnamed1, complete sequence	203749-203778	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP023809	Enterococcus faecium strain Efaecium_ER04526.3A plasmid pER04562.3A.1, complete sequence	192286-192315	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP023805	Enterococcus faecium strain Efaecium_ER04619.3A isolate isolate plasmid pER04619.3A.1, complete sequence	190940-190969	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP018827	Enterococcus faecium strain ISMMS_VRE_12 plasmid p1_ISMMS_VRE12, complete sequence	233406-233435	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP012461	Enterococcus faecium strain ISMMS_VRE_7 plasmid ISMMS_VRE7_p1, complete sequence	2692-2721	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP023795	Enterococcus faecium strain Efaecium_ER04484.3A plasmid pER04484.3A.1, complete sequence	192286-192315	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NZ_CP023781	Enterococcus faecium strain Efaecium_ER03933.3A isolate isolate plasmid pER93933.3A.1, complete sequence	189609-189638	6	0.8
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	KP411127	Uncultured phage clone psaA_CAR13_05 PsaA (psaA) gene, partial cds	50-79	6	0.8
NZ_CP006942_1	1.1\|1932910\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1932910-1932939	30	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	13798-13827	7	0.767
NZ_CP006942_1	1.1\|1932910\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1932910-1932939	30	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	48472-48501	7	0.767
NZ_CP006942_1	1.1\|1932910\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1932910-1932939	30	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	52993-53022	7	0.767
NZ_CP006942_1	1.1\|1932910\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1932910-1932939	30	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	68978-69007	7	0.767
NZ_CP006942_1	1.1\|1932910\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1932910-1932939	30	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	212489-212518	7	0.767
NZ_CP006942_1	1.1\|1932910\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1932910-1932939	30	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	243480-243509	7	0.767
NZ_CP006942_1	1.1\|1932910\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1932910-1932939	30	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	255830-255859	7	0.767
NZ_CP006942_1	1.1\|1932910\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1932910-1932939	30	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	387954-387983	7	0.767
NZ_CP006942_1	1.1\|1932910\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1932910-1932939	30	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	6057-6086	7	0.767
NZ_CP006942_1	1.1\|1932910\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1932910-1932939	30	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	109153-109182	7	0.767
NZ_CP006942_1	1.1\|1932910\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1932910-1932939	30	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	153479-153508	7	0.767
NZ_CP006942_1	1.1\|1932910\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1932910-1932939	30	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	337203-337232	7	0.767
NZ_CP006942_1	1.1\|1932910\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1932910-1932939	30	MN694172	Marine virus AFVG_250M818, complete genome	15451-15480	7	0.767
NZ_CP006942_1	1.2\|1932976\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1932976-1933005	30	NZ_CP035292	Staphylococcus haemolyticus strain ATCC 29970 plasmid unnamed1, complete sequence	21418-21447	7	0.767
NZ_CP006942_1	1.2\|1932976\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1932976-1933005	30	NZ_CP010403	Staphylococcus aureus subsp. aureus strain GR2 plasmid pGR2A, complete sequence	8880-8909	7	0.767
NZ_CP006942_1	1.2\|1932976\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1932976-1933005	30	NZ_CP029661	Staphylococcus aureus strain AR_0228 plasmid unnamed1, complete sequence	8515-8544	7	0.767
NZ_CP006942_1	1.2\|1932976\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1932976-1933005	30	NC_017350	Staphylococcus aureus subsp. aureus 11819-97 plasmid p11819-97, complete sequence	8153-8182	7	0.767
NZ_CP006942_1	1.2\|1932976\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1932976-1933005	30	NC_013328	Staphylococcus aureus plasmid pWBG753, complete sequence	9753-9782	7	0.767
NZ_CP006942_1	1.2\|1932976\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1932976-1933005	30	NC_013377	Staphylococcus epidermidis plasmid SAP105A, complete sequence	18635-18664	7	0.767
NZ_CP006942_1	1.2\|1932976\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1932976-1933005	30	NZ_MH587574	Staphylococcus aureus strain WBG10514 plasmid pWBG731, complete sequence	42714-42743	7	0.767
NZ_CP006942_1	1.1\|1932910\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1932910-1932939	30	MN694464	Marine virus AFVG_250M526, complete genome	1726-1755	8	0.733
NZ_CP006942_1	1.3\|1933042\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1933042-1933071	30	MN657137	Carnobacterium sp. strain ANT_P1 plasmid pA1P3, complete sequence	5195-5224	8	0.733
NZ_CP006942_1	1.4\|1933108\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1933108-1933137	30	MG428990	Klebsiella phage Menlow, complete genome	59810-59839	8	0.733
NZ_CP006942_1	1.4\|1933108\|30\|NZ_CP006942\|PILER-CR,CRISPRCasFinder,CRT	1933108-1933137	30	MN045230	Klebsiella phage Magnus, complete genome	60938-60967	8	0.733
NZ_CP006942_1	1.7\|1933306\|30\|NZ_CP006942\|CRISPRCasFinder,CRT	1933306-1933335	30	NC_028766	Mannheimia phage vB_MhM_3927AP2, complete genome	29666-29695	8	0.733

1. spacer 1.1|1932910|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to MN692981 (Marine virus AFVG_117M36, complete genome) position: , mismatch: 5, identity: 0.833

--tcaaaactatctaatataacttgccaatct	CRISPR spacer
atccaaga--atctaatatatcttgccaatct	Protospacer
  .***.*  ********** ***********

2. spacer 1.6|1933240|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to MF417947 (Uncultured Caudovirales phage clone 3F_8, partial genome) position: , mismatch: 5, identity: 0.833

ttcaacgaataaatgggctgatgtttgtcg-	CRISPR spacer
tacaacgaataaatgggctggt-tttgaagt	Protospacer
* ******************.* ****  *

3. spacer 1.1|1932910|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048628 (Megamonas funiformis strain JCM 14723 plasmid putative_Mfuni1, complete sequence) position: , mismatch: 6, identity: 0.8

tcaaaactatctaatataacttgccaatct	CRISPR spacer
tcaaaactatttaatataatttgtgtatat	Protospacer
**********.********.***.  ** *

4. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP011282 (Enterococcus faecium strain E39 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

5. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP025426 (Enterococcus faecium strain SC4 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

6. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to LT603679 (Enterococcus faecium isolate Ef_DMG1500501 genome assembly, plasmid: 2) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

7. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP018832 (Enterococcus faecium strain ISMMS_VRE_9 plasmid p1_ISMMS_VRE9, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

8. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP040369 (Enterococcus faecium strain VB3240 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

9. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP020485 (Enterococcus faecium strain CFSAN059070 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

10. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP013995 (Enterococcus faecium strain 6E6 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

11. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP027518 (Enterococcus faecium strain AUSMDU00004024 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

12. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP027498 (Enterococcus faecium strain AUSMDU00004167 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

13. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP027507 (Enterococcus faecium strain AUSMDU00004055 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

14. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP027502 (Enterococcus faecium strain AUSMDU00004142 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

15. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_LR135288 (Enterococcus faecium isolate E7199 plasmid 2) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

16. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP025756 (Enterococcus faecium strain AALTL plasmid pEFA-99d7, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

17. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_LR135279 (Enterococcus faecium isolate E6975 plasmid 2) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

18. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP019209 (Enterococcus faecium strain 2014-VREF-41 plasmid p41-1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

19. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP019989 (Enterococcus faecium isolate 2014-VREF-63 plasmid p63-1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

20. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP017798 (Enterococcus faecium strain E243 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

21. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_LR135476 (Enterococcus faecium isolate E8423 plasmid 2) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

22. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_LR135352 (Enterococcus faecium isolate E8014 plasmid 2) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

23. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP017793 (Enterococcus faecium strain E240 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

24. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP019993 (Enterococcus faecium isolate 2014-VREF-268 plasmid p268-1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

25. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP035655 (Enterococcus faecium strain UAMSEF_08 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

26. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP023790 (Enterococcus faecium strain Efaecium_ER04462.3A plasmid pER04462.3A.1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

27. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP023800 (Enterococcus faecium strain Efaecium_ER04526.5A plasmid pER04526.5A.1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

28. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP035661 (Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

29. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP035667 (Enterococcus faecium strain UAMSEF_20 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

30. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP035649 (Enterococcus faecium strain UAMSEF_01 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

31. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP040237 (Enterococcus faecium strain VB3025 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

32. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP023809 (Enterococcus faecium strain Efaecium_ER04526.3A plasmid pER04562.3A.1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

33. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP023805 (Enterococcus faecium strain Efaecium_ER04619.3A isolate isolate plasmid pER04619.3A.1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

34. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP018827 (Enterococcus faecium strain ISMMS_VRE_12 plasmid p1_ISMMS_VRE12, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

35. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP012461 (Enterococcus faecium strain ISMMS_VRE_7 plasmid ISMMS_VRE7_p1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

36. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP023795 (Enterococcus faecium strain Efaecium_ER04484.3A plasmid pER04484.3A.1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

37. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NZ_CP023781 (Enterococcus faecium strain Efaecium_ER03933.3A isolate isolate plasmid pER93933.3A.1, complete sequence) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aacagctaaatcgcaaaatcttaatggctg	Protospacer
** ******************* *. *  *

38. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to KP411127 (Uncultured phage clone psaA_CAR13_05 PsaA (psaA) gene, partial cds) position: , mismatch: 6, identity: 0.8

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
aagaggtaagtcgcaaaatcttttcggcac	Protospacer
***** ***.************* * * *

39. spacer 1.1|1932910|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.767

tcaaaact---atctaatataacttgccaatct	CRISPR spacer
---gaattttgttctaatataactttccaatct	Protospacer
   .**.*    ************* *******

40. spacer 1.1|1932910|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.767

tcaaaact---atctaatataacttgccaatct	CRISPR spacer
---gaattttgttctaatataactttccaatct	Protospacer
   .**.*    ************* *******

41. spacer 1.1|1932910|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.767

tcaaaact---atctaatataacttgccaatct	CRISPR spacer
---gaattttgttctaatataactttccaatct	Protospacer
   .**.*    ************* *******

42. spacer 1.1|1932910|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.767

tcaaaact---atctaatataacttgccaatct	CRISPR spacer
---gaattttgttctaatataactttccaatct	Protospacer
   .**.*    ************* *******

43. spacer 1.1|1932910|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.767

tcaaaact---atctaatataacttgccaatct	CRISPR spacer
---gaattttgttctaatataactttccaatct	Protospacer
   .**.*    ************* *******

44. spacer 1.1|1932910|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.767

tcaaaact---atctaatataacttgccaatct	CRISPR spacer
---gaattttgttctaatataactttccaatct	Protospacer
   .**.*    ************* *******

45. spacer 1.1|1932910|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.767

tcaaaact---atctaatataacttgccaatct	CRISPR spacer
---gaattttgttctaatataactttccaatct	Protospacer
   .**.*    ************* *******

46. spacer 1.1|1932910|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.767

tcaaaact---atctaatataacttgccaatct	CRISPR spacer
---gaattttgttctaatataactttccaatct	Protospacer
   .**.*    ************* *******

47. spacer 1.1|1932910|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.767

tcaaaact---atctaatataacttgccaatct	CRISPR spacer
---gaattttgttctaatataactttccaatct	Protospacer
   .**.*    ************* *******

48. spacer 1.1|1932910|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.767

tcaaaact---atctaatataacttgccaatct	CRISPR spacer
---gaattttgttctaatataactttccaatct	Protospacer
   .**.*    ************* *******

49. spacer 1.1|1932910|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.767

tcaaaact---atctaatataacttgccaatct	CRISPR spacer
---gaattttgttctaatataactttccaatct	Protospacer
   .**.*    ************* *******

50. spacer 1.1|1932910|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.767

tcaaaact---atctaatataacttgccaatct	CRISPR spacer
---gaattttgttctaatataactttccaatct	Protospacer
   .**.*    ************* *******

51. spacer 1.1|1932910|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to MN694172 (Marine virus AFVG_250M818, complete genome) position: , mismatch: 7, identity: 0.767

tcaaaactatctaatataacttgccaatct	CRISPR spacer
ccgtatctttctaatataactagccaatcc	Protospacer
.*. * ** ************ *******.

52. spacer 1.2|1932976|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035292 (Staphylococcus haemolyticus strain ATCC 29970 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcgcacaacaacgagcgttattgagaaaa	CRISPR spacer
tagtctcaaaaacgaacgttattgagaaaa	Protospacer
    * *** *****.**************

53. spacer 1.2|1932976|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010403 (Staphylococcus aureus subsp. aureus strain GR2 plasmid pGR2A, complete sequence) position: , mismatch: 7, identity: 0.767

gtcgcacaacaacgagcgttattgagaaaa	CRISPR spacer
tagtctcaaaaacgaacgttattgagaaaa	Protospacer
    * *** *****.**************

54. spacer 1.2|1932976|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029661 (Staphylococcus aureus strain AR_0228 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcgcacaacaacgagcgttattgagaaaa	CRISPR spacer
tagtctcaaaaacgaacgttattgagaaaa	Protospacer
    * *** *****.**************

55. spacer 1.2|1932976|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to NC_017350 (Staphylococcus aureus subsp. aureus 11819-97 plasmid p11819-97, complete sequence) position: , mismatch: 7, identity: 0.767

gtcgcacaacaacgagcgttattgagaaaa	CRISPR spacer
tagtctcaaaaacgaacgttattgagaaaa	Protospacer
    * *** *****.**************

56. spacer 1.2|1932976|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to NC_013328 (Staphylococcus aureus plasmid pWBG753, complete sequence) position: , mismatch: 7, identity: 0.767

gtcgcacaacaacgagcgttattgagaaaa	CRISPR spacer
tagtctcaaaaacgaacgttattgagaaaa	Protospacer
    * *** *****.**************

57. spacer 1.2|1932976|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to NC_013377 (Staphylococcus epidermidis plasmid SAP105A, complete sequence) position: , mismatch: 7, identity: 0.767

gtcgcacaacaacgagcgttattgagaaaa	CRISPR spacer
tagtctcaaaaacgaacgttattgagaaaa	Protospacer
    * *** *****.**************

58. spacer 1.2|1932976|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH587574 (Staphylococcus aureus strain WBG10514 plasmid pWBG731, complete sequence) position: , mismatch: 7, identity: 0.767

gtcgcacaacaacgagcgttattgagaaaa	CRISPR spacer
tagtctcaaaaacgaacgttattgagaaaa	Protospacer
    * *** *****.**************

59. spacer 1.1|1932910|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to MN694464 (Marine virus AFVG_250M526, complete genome) position: , mismatch: 8, identity: 0.733

tcaaaactatctaatataacttgccaatct	CRISPR spacer
aataaactatctgataaaacttgccaaaga	Protospacer
   *********.*** **********

60. spacer 1.3|1933042|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to MN657137 (Carnobacterium sp. strain ANT_P1 plasmid pA1P3, complete sequence) position: , mismatch: 8, identity: 0.733

ttcatcgccttgtatgccaaccttgatttc	CRISPR spacer
gttctgtacttctatgccaaccttgatttt	Protospacer
 *. *   *** *****************.

61. spacer 1.4|1933108|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to MG428990 (Klebsiella phage Menlow, complete genome) position: , mismatch: 8, identity: 0.733

gttgccgttgttataatcatcacgcacaaa	CRISPR spacer
tttgccgttgtcataatcttcacgccaggc	Protospacer
 **********.****** ******  ..

62. spacer 1.4|1933108|30|NZ_CP006942|PILER-CR,CRISPRCasFinder,CRT matches to MN045230 (Klebsiella phage Magnus, complete genome) position: , mismatch: 8, identity: 0.733

gttgccgttgttataatcatcacgcacaaa	CRISPR spacer
tttgccgttgtcataatcttcacgccaggc	Protospacer
 **********.****** ******  ..

63. spacer 1.7|1933306|30|NZ_CP006942|CRISPRCasFinder,CRT matches to NC_028766 (Mannheimia phage vB_MhM_3927AP2, complete genome) position: , mismatch: 8, identity: 0.733

aagagctaaatcgcaaaatctttaccgaag	CRISPR spacer
gcacgctaaattgcgaaatctttaccgtaa	Protospacer
. . *******.**.************ *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

787983 : 879564

Mannheimia_phage(32.08%)

holin,transposase,portal,integrase,terminase,tail,head,tRNA,capsid,protease

attL 836244:836290|attR 875252:875298

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025235642.1\|787983_788769_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_038643896.1\|788821_790969_-	cadmium-translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.5e-107	36.5
WP_025235643.1\|790968_791169_-	heavy-metal-associated domain-containing protein	A0A218MNH0	uncultured_virus	9.7e-06	50.0
WP_025235644.1\|791243_791633_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA
WP_025235645.1\|791730_793644_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	3.8e-91	34.6
WP_025235646.1\|793714_794320_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_025235647.1\|794389_794746_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_025235648.1\|794742_795645_+	DMT family transporter	NA	NA	NA	NA
WP_025235649.1\|795659_796559_+	cytidine deaminase	NA	NA	NA	NA
WP_025235650.1\|796730_798122_+	DASS family sodium-coupled anion symporter	NA	NA	NA	NA
WP_025235651.1\|798170_799313_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	A0A218MNE0	uncultured_virus	4.5e-164	70.7
WP_025235652.1\|799490_802058_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	6.4e-126	34.2
WP_025235653.1\|802323_802980_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_025235654.1\|803172_805020_+	dihydroxy-acid dehydratase	NA	NA	NA	NA
WP_158497206.1\|805275_805437_+	hypothetical protein	NA	NA	NA	NA
WP_025235655.1\|805467_810126_+	hypothetical protein	NA	NA	NA	NA
WP_025235656.1\|810240_811530_-	MFS transporter	NA	NA	NA	NA
WP_051411624.1\|811736_812060_-	RnfH family protein	NA	NA	NA	NA
WP_025235658.1\|812049_812484_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_025235659.1\|812538_813594_-	molybdenum ABC transporter ATP-binding protein ModC	G9BWD6	Planktothrix_phage	2.6e-25	35.5
WP_025235660.1\|813580_814273_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_025235661.1\|814272_815031_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_025235662.1\|815040_815802_-	ABC transporter permease	NA	NA	NA	NA
WP_025235663.1\|815803_816712_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	3.3e-24	34.4
WP_025235664.1\|816716_818756_-	DNA polymerase III subunit gamma/tau	A0A1L2BWV7	Bacteriophage	2.8e-47	37.5
WP_025235665.1\|818903_819443_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.9e-24	40.5
WP_025216984.1\|819526_819877_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	9.6e-25	54.7
WP_025216985.1\|819905_820571_-	BAX inhibitor protein	A0A2H4JFM9	uncultured_Caudovirales_phage	3.0e-51	55.2
WP_025216986.1\|820768_821317_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_025235666.1\|821392_823228_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_025235667.1\|823471_824782_+	purine permease	Q9KX94	Enterobacteria_phage	5.2e-23	27.4
WP_025235668.1\|824911_825241_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	6.9e-17	47.8
WP_025235669.1\|825451_826717_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_025235670.1\|826719_827607_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_025235671.1\|827780_829079_+	adenylosuccinate synthase	A0A285PX35	Cedratvirus	3.9e-71	36.4
WP_081732093.1\|829668_829950_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.8e-16	43.0
WP_144084216.1\|830014_830167_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_025235672.1\|830216_831542_-	GntP family permease	NA	NA	NA	NA
WP_025235673.1\|831653_832412_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA
WP_025235674.1\|832441_833623_-	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_025235675.1\|833710_834370_-	CoA transferase subunit B	NA	NA	NA	NA
WP_025235676.1\|834386_835034_-	acetate CoA-transferase subunit alpha	NA	NA	NA	NA
WP_025235677.1\|835314_836214_+	LysR family transcriptional regulator	NA	NA	NA	NA
836244:836290	attL	NA	NA	NA	NA
WP_025235678.1\|836530_836872_-	hypothetical protein	NA	NA	NA	NA
WP_025235679.1\|836934_842604_-	DUF1983 domain-containing protein	A0A0M3LQ61	Mannheimia_phage	2.8e-246	39.0
WP_025235680.1\|842675_843188_-\|tail	tail assembly protein	A0A0M3LQC4	Mannheimia_phage	9.1e-32	50.0
WP_025235681.1\|843205_843985_-	C40 family peptidase	A0A0M3LP75	Mannheimia_phage	1.7e-61	47.4
WP_025235682.1\|843986_844718_-\|tail	phage minor tail protein L	A0A0M3LPR8	Mannheimia_phage	3.2e-70	53.3
WP_025235683.1\|844717_845053_-\|tail	phage tail protein	A0A1W6JNT2	Morganella_phage	6.6e-07	32.1
WP_025235684.1\|845062_848488_-	tape measure protein	A0A0E3GMH8	Enterobacteria_phage	8.2e-60	25.9
WP_038644105.1\|848541_848736_-	hypothetical protein	NA	NA	NA	NA
WP_081732094.1\|848851_849112_-	DUF4035 domain-containing protein	NA	NA	NA	NA
WP_025235687.1\|849126_849543_-	hypothetical protein	NA	NA	NA	NA
WP_006252746.1\|849600_850257_-	hypothetical protein	NA	NA	NA	NA
WP_038643902.1\|850261_850606_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_025235689.1\|850602_851085_-	HK97 gp10 family phage protein	A4JX05	Burkholderia_virus	2.6e-12	38.0
WP_025235690.1\|851077_851401_-\|head	phage head closure protein	A0A1J0GUY4	Halomonas_phage	1.6e-18	50.6
WP_025235691.1\|851401_851719_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_025235692.1\|851762_852959_-\|capsid	phage major capsid protein	A0A0R6PI48	Moraxella_phage	4.2e-136	65.2
WP_038643905.1\|852960_853620_-\|head,protease	HK97 family phage prohead protease	A0A0R6PIE4	Moraxella_phage	2.4e-69	61.1
WP_025235694.1\|853609_854848_-\|portal	phage portal protein	A0A0R6PKP4	Moraxella_phage	4.6e-146	64.9
WP_025235695.1\|854844_856356_-\|terminase	terminase large subunit	Q9MCV7	Escherichia_phage	3.0e-192	67.3
WP_025235696.1\|856355_856820_-	hypothetical protein	Q77WA1	Escherichia_phage	3.7e-16	42.4
WP_025235697.1\|856917_857241_-	HNH endonuclease	B4UTZ8	Rhizobium_phage	4.3e-19	57.9
WP_025235698.1\|857365_857650_-	hypothetical protein	A0A0M3LNX0	Mannheimia_phage	7.1e-10	45.1
WP_158497207.1\|857555_857834_-	DUF2570 family protein	NA	NA	NA	NA
WP_025235699.1\|858001_858601_-	hypothetical protein	NA	NA	NA	NA
WP_025235700.1\|858601_858955_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	8.0e-11	35.5
WP_025235701.1\|859091_859598_-	antitermination protein	NA	NA	NA	NA
WP_025235702.1\|859590_859956_-	RusA family crossover junction endodeoxyribonuclease	A0A0M3LPZ2	Mannheimia_phage	2.1e-59	86.0
WP_025235703.1\|859952_860231_-	DUF1364 domain-containing protein	A0A0M3LQ97	Mannheimia_phage	3.1e-34	75.5
WP_158497208.1\|860332_860473_-	hypothetical protein	NA	NA	NA	NA
WP_025235704.1\|860513_861146_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	1.1e-18	28.6
WP_025235705.1\|861115_861628_-	adenine methyltransferase	Q7Y5V8	Haemophilus_phage	2.4e-72	74.8
WP_025235706.1\|861624_862272_-	bacteriophage replication protein	A0A0M3LS65	Mannheimia_phage	5.4e-98	81.9
WP_025235707.1\|862271_863045_-	hypothetical protein	A0A0M3LS90	Mannheimia_phage	4.9e-53	88.0
WP_025235708.1\|863041_863752_-	antirepressor	A0A2D0YGX8	Vibrio_phage	3.9e-33	37.2
WP_025235709.1\|863807_864026_-	helix-turn-helix domain-containing protein	D0UIL8	Aggregatibacter_phage	5.2e-13	63.9
WP_081732129.1\|864175_864847_+	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	5.6e-21	32.3
WP_025235711.1\|864889_865756_-	hypothetical protein	A0A0R6PHP9	Moraxella_phage	6.6e-59	43.6
WP_025235712.1\|865767_866118_-	hypothetical protein	NA	NA	NA	NA
WP_025235713.1\|867127_868066_+	hypothetical protein	A0A0M3LR66	Mannheimia_phage	4.9e-108	73.1
WP_025235714.1\|868075_868873_+	phage recombination protein Bet	A0A0M3LR26	Mannheimia_phage	1.9e-121	82.0
WP_025235715.1\|868869_869481_+	YqaJ viral recombinase family protein	A0A0M3LPU0	Mannheimia_phage	1.0e-90	80.2
WP_025235716.1\|869519_869723_+	hypothetical protein	NA	NA	NA	NA
WP_025235717.1\|869725_870610_+	hypothetical protein	A0A0M3LPL3	Mannheimia_phage	8.1e-36	61.8
WP_025235718.1\|870635_870920_+	hypothetical protein	NA	NA	NA	NA
WP_038644113.1\|871158_871368_+	hypothetical protein	A0A0M3LQA6	Mannheimia_phage	5.0e-13	54.2
WP_158497209.1\|871369_871507_+	hypothetical protein	NA	NA	NA	NA
WP_025235720.1\|871499_871985_+	DUF551 domain-containing protein	A0A0M3LS47	Mannheimia_phage	4.4e-60	78.9
WP_025235721.1\|872144_872330_+	DUF1382 family protein	NA	NA	NA	NA
WP_025235722.1\|872313_872790_+	hypothetical protein	A0A0M3LTD8	Mannheimia_phage	9.3e-39	55.2
WP_025235723.1\|872793_872982_-	hypothetical protein	A0A0M3LSW7	Mannheimia_phage	5.3e-22	79.0
WP_051411639.1\|873229_873970_+	DNA methyltransferase	K4JU61	Streptococcus_phage	1.3e-74	60.5
WP_025235724.1\|874171_875167_+\|integrase	site-specific integrase	A0A077KGX2	Edwardsiella_phage	2.8e-61	36.7
WP_025235725.1\|875596_876457_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	6.9e-32	36.5
875252:875298	attR	NA	NA	NA	NA
WP_025235726.1\|876584_878036_+\|tRNA	tRNA 4-thiouridine(8) synthase ThiI	NA	NA	NA	NA
WP_025235727.1\|878154_878439_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_025235728.1\|878619_879564_+	LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee	A0A1W6JP29	Morganella_phage	3.8e-52	38.6

DBSCAN-SWA_2

1062685 : 1073321

Bacillus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025235836.1\|1062685_1064452_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	F2Y2R6	Organic_Lake_phycodnavirus	6.8e-18	30.4
WP_025235837.1\|1064451_1066119_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	8.1e-21	25.6
WP_025235838.1\|1066256_1066439_+	addiction module toxin, HicA family	A0A0R6PJD4	Moraxella_phage	7.7e-18	65.0
WP_025235839.1\|1066463_1066874_+	type II toxin-antitoxin system HicB family antitoxin	Q775F5	Haemophilus_virus	2.9e-41	61.9
WP_025235840.1\|1066990_1067620_+	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_025235841.1\|1067653_1069021_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	5.3e-111	46.9
WP_025235842.1\|1069087_1069849_+	DeoR/GlpR family transcriptional regulator	A0A077SK06	Escherichia_phage	7.0e-20	29.2
WP_025235843.1\|1069841_1070717_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_025235844.1\|1070888_1073321_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	A0A172JHT4	Bacillus_phage	1.1e-103	32.1

DBSCAN-SWA_3

1134864 : 1144387

uncultured_Caudovirales_phage(75.0%)

integrase,terminase,tail,head,capsid,protease

attL 1137872:1137887|attR 1152192:1152207

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025235902.1\|1134864_1136544_-\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	3.3e-240	70.8
WP_025235903.1\|1136540_1136900_-\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	2.9e-40	68.1
WP_025235904.1\|1137144_1137501_-	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	6.5e-29	53.4
WP_025235905.1\|1137512_1137818_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4J8C5	uncultured_Caudovirales_phage	5.1e-06	33.0
WP_025235906.1\|1137810_1138182_-\|head	phage head closure protein	NA	NA	NA	NA
1137872:1137887	attL	NA	NA	NA	NA
WP_025235907.1\|1139378_1139948_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	4.4e-51	57.5
WP_025235908.1\|1140000_1141188_-\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	2.9e-129	64.6
WP_025235909.1\|1141180_1141615_-	hypothetical protein	NA	NA	NA	NA
WP_025235910.1\|1141941_1143180_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	1.2e-85	42.3
WP_025235911.1\|1143574_1144387_-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	S4TT53	Salmonella_phage	1.8e-10	38.6
1152192:1152207	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1506109 : 1516109

Chrysochromulina_ericina_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025236215.1\|1506109_1507963_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.0e-109	43.0
WP_025236216.1\|1508020_1508653_-	DUF2625 family protein	NA	NA	NA	NA
WP_025236217.1\|1508687_1509209_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
WP_025236218.1\|1509218_1509542_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.3e-23	46.7
WP_025236219.1\|1509650_1510034_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	2.5e-50	74.2
WP_025236220.1\|1510064_1511285_-	IscS subfamily cysteine desulfurase	A0A2K9L679	Tupanvirus	9.8e-16	27.7
WP_025236221.1\|1511341_1511794_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
WP_025236222.1\|1512152_1513637_+	membrane protein	NA	NA	NA	NA
WP_025236223.1\|1513700_1514255_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	3.0e-28	44.6
WP_025236224.1\|1514267_1516109_-	response regulator	A0A1V0SGX0	Hokovirus	4.1e-42	30.1

DBSCAN-SWA_5

1762473 : 1768917

Acinetobacter_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025236453.1\|1762473_1763064_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.2e-37	40.9
WP_025236454.1\|1763056_1763443_+	tautomerase family protein	NA	NA	NA	NA
WP_025236455.1\|1763481_1764480_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.3e-53	38.2
WP_025236456.1\|1764543_1765299_+	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	2.2e-34	36.2
WP_025236457.1\|1765526_1765904_-	SufE family protein	NA	NA	NA	NA
WP_025236458.1\|1766018_1766612_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	3.6e-64	62.9
WP_025236459.1\|1766611_1767859_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	7.4e-120	54.9
WP_025236460.1\|1767936_1768917_+	Fic family protein	D7RWK9	Brochothrix_phage	3.3e-06	28.3

DBSCAN-SWA_6

2052112 : 2112238

Mannheimia_phage(66.0%)

plate,transposase,integrase,terminase,tail,head,tRNA,capsid

attL 2073524:2073540|attR 2114160:2114176

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025236712.1\|2052112_2053540_-\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_025236713.1\|2053754_2054255_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA
WP_025236714.1\|2054335_2056057_-	phosphoenolpyruvate-protein phosphotransferase PtsI	A0A1V0SGR7	Hokovirus	4.3e-17	31.5
WP_025216575.1\|2056169_2056427_-	phosphocarrier protein Hpr	NA	NA	NA	NA
WP_025236715.1\|2056683_2058258_+	thiamine/thiamine pyrophosphate ABC transporter permease ThiP	NA	NA	NA	NA
WP_025236716.1\|2058254_2058899_+	thiamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-22	35.8
WP_025236717.1\|2059008_2060433_+	PTS sucrose transporter subunit IIBC	NA	NA	NA	NA
WP_025236718.1\|2060515_2061319_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_025236719.1\|2061399_2062065_-	7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	A0A2I7SAW6	Vibrio_phage	5.6e-58	58.0
WP_025236720.1\|2062269_2062959_+	pirin family protein	NA	NA	NA	NA
WP_025236721.1\|2063035_2064055_-	porphobilinogen synthase	NA	NA	NA	NA
WP_025236722.1\|2064118_2064874_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	9.0e-20	28.5
WP_025236723.1\|2064860_2065511_-	Sec-independent protein translocase subunit TatB	NA	NA	NA	NA
WP_025236724.1\|2065514_2065751_-	Sec-independent protein translocase subunit TatA	NA	NA	NA	NA
WP_025236725.1\|2065861_2067499_-	ubiquinone biosynthesis regulatory protein kinase UbiB	M4R0M8	Ostreococcus_lucimarinus_virus	1.1e-38	28.7
WP_025236726.1\|2067498_2068128_-	hypothetical protein	NA	NA	NA	NA
WP_025236727.1\|2068130_2068919_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_025236728.1\|2069248_2070202_+	magnesium/cobalt transporter CorA	NA	NA	NA	NA
WP_025236729.1\|2070268_2072071_+	DUF4153 domain-containing protein	NA	NA	NA	NA
WP_025236730.1\|2072114_2073119_-	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_025236731.1\|2073196_2074036_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
2073524:2073540	attL	NA	NA	NA	NA
WP_025236732.1\|2074281_2075616_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
WP_025236733.1\|2075933_2076716_-	hypothetical protein	F6MIM2	Haemophilus_phage	3.3e-118	76.6
WP_025236734.1\|2076844_2077309_-	enoyl-CoA hydratase	F6MIM0	Haemophilus_phage	1.9e-57	65.6
WP_051411648.1\|2077305_2077716_-	hypothetical protein	NA	NA	NA	NA
WP_025236737.1\|2079725_2080310_-	DUF2313 domain-containing protein	F6MIL7	Haemophilus_phage	1.1e-84	79.8
WP_025236738.1\|2080309_2081371_-\|plate	baseplate J/gp47 family protein	F6MIL6	Haemophilus_phage	4.5e-150	77.3
WP_025236739.1\|2081385_2081736_-	hypothetical protein	A0A0M3LQK5	Mannheimia_phage	9.2e-52	87.1
WP_038644035.1\|2081842_2082496_-\|plate	phage baseplate assembly protein	A0A0M3LPA3	Mannheimia_phage	1.0e-96	86.6
WP_038644037.1\|2082498_2083638_-\|tail	tail protein	A0A0M3LPS4	Mannheimia_phage	2.2e-195	92.6
WP_025236742.1\|2083641_2085003_-	hypothetical protein	F6MIL2	Haemophilus_phage	9.8e-150	59.2
WP_025236743.1\|2085002_2087381_-\|tail	phage tail tape measure protein	A0A0M3LPB6	Mannheimia_phage	0.0e+00	85.5
WP_005606527.1\|2087433_2087622_-	hypothetical protein	A0A0M3LSQ8	Mannheimia_phage	3.6e-26	96.8
WP_025236744.1\|2087651_2088011_-	hypothetical protein	A0A0M3LSI2	Mannheimia_phage	1.1e-44	77.9
WP_025236745.1\|2088010_2088385_-\|tail	phage tail protein	A0A0M3LRV6	Mannheimia_phage	3.2e-58	91.9
WP_025236746.1\|2088395_2089808_-\|tail	tail sheath protein	A0A0M3LQC3	Mannheimia_phage	1.1e-239	93.6
WP_025236747.1\|2089800_2089992_-	DUF2635 domain-containing protein	A0A0M3LQM9	Mannheimia_phage	1.5e-19	86.4
WP_025236748.1\|2089978_2090245_-	hypothetical protein	B7SDP6	Haemophilus_phage	1.3e-26	65.9
WP_025236749.1\|2090241_2090880_-	DUF1834 family protein	A0A0M3LQJ7	Mannheimia_phage	7.0e-106	94.6
WP_025236750.1\|2090876_2091302_-	DUF1320 domain-containing protein	A0A0M3LP98	Mannheimia_phage	2.2e-68	93.6
WP_025236751.1\|2091301_2091619_-	hypothetical protein	A0A0M3LPR6	Mannheimia_phage	1.1e-27	89.4
WP_025236752.1\|2091666_2092584_-\|head	head protein	B7SDP1	Haemophilus_phage	9.6e-149	85.5
WP_025236753.1\|2092583_2093651_-	hypothetical protein	A0A0M3LPA7	Mannheimia_phage	1.8e-183	92.4
WP_025236754.1\|2093908_2094325_-	phage virion morphogenesis protein	A0A0M3LSP9	Mannheimia_phage	1.6e-63	88.3
WP_038644039.1\|2094321_2094531_-	hypothetical protein	NA	NA	NA	NA
WP_025236756.1\|2094681_2095986_-\|capsid	minor capsid protein	A0A0M3LSH7	Mannheimia_phage	4.0e-233	92.6
WP_025236757.1\|2095972_2097586_-	DUF935 domain-containing protein	A0A0M3LRU4	Mannheimia_phage	4.9e-289	92.0
WP_025236758.1\|2097645_2099268_-\|terminase	phage terminase large subunit	A0A0M3LQB7	Mannheimia_phage	1.9e-296	92.2
WP_025236759.1\|2099417_2099918_-	DUF1804 family protein	A0A0M3LQI8	Mannheimia_phage	2.3e-80	97.0
WP_025236760.1\|2099925_2100180_-	hypothetical protein	A0A0M3LP87	Mannheimia_phage	2.0e-27	94.0
WP_025236761.1\|2100179_2100437_-	hypothetical protein	A0A0M3LPQ4	Mannheimia_phage	2.1e-13	100.0
WP_038644040.1\|2100599_2100959_-	DUF2681 domain-containing protein	A0A0M3LP93	Mannheimia_phage	2.3e-50	84.0
WP_025236762.1\|2100955_2101198_-	DUF2644 domain-containing protein	A0A0M3LSN9	Mannheimia_phage	7.8e-34	88.9
WP_025236763.1\|2101201_2101735_-	glycoside hydrolase family 108 protein	A0A0M3LSH2	Mannheimia_phage	1.4e-96	95.5
WP_025236764.1\|2101821_2102253_-	hypothetical protein	A0A0M3LRS6	Mannheimia_phage	3.5e-53	69.9
WP_025236765.1\|2103028_2103376_-	hypothetical protein	A0A0M3LQH8	Mannheimia_phage	2.3e-55	97.4
WP_025236766.1\|2103469_2103676_-	hypothetical protein	NA	NA	NA	NA
WP_025236767.1\|2103686_2104286_-	antirepressor	A0A0R6PJV6	Moraxella_phage	3.0e-26	51.1
WP_025236768.1\|2104641_2105070_-	regulatory protein GemA	F6MIJ6	Haemophilus_phage	4.9e-39	58.2
WP_025236769.1\|2105053_2105611_-	hypothetical protein	A0A0M3LPP6	Mannheimia_phage	8.5e-92	94.1
WP_025236770.1\|2105607_2105850_-	hypothetical protein	A0A0M3LPZ3	Mannheimia_phage	3.1e-06	50.0
WP_025236771.1\|2105921_2106311_-	hypothetical protein	NA	NA	NA	NA
WP_025236772.1\|2106334_2106517_-	hypothetical protein	A0A0M3LSN0	Mannheimia_phage	2.0e-21	86.7
WP_025236773.1\|2106526_2106724_-	ANR family transcriptional regulator	A0A0M3LSH0	Mannheimia_phage	3.7e-10	77.5
WP_025236775.1\|2107041_2107659_-	DUF3164 family protein	A0A0M3LQ92	Mannheimia_phage	3.2e-108	95.6
WP_005822932.1\|2107672_2107864_-	hypothetical protein	A0A0M3LQK4	Mannheimia_phage	5.6e-27	95.2
WP_005606439.1\|2107866_2108187_-	hypothetical protein	A0A0M3LQH1	Mannheimia_phage	2.7e-42	92.5
WP_025236776.1\|2108197_2109079_-	AAA family ATPase	A0A0M3LP72	Mannheimia_phage	9.5e-146	93.5
WP_025236777.1\|2109089_2111057_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	F6MII5	Haemophilus_phage	3.8e-126	39.3
WP_025236778.1\|2111077_2111338_-	Nlp family transcriptional regulator	F6MII4	Haemophilus_phage	1.6e-37	87.2
WP_025236779.1\|2111521_2112238_+	helix-turn-helix transcriptional regulator	F6MII3	Haemophilus_phage	1.8e-86	67.9
2114160:2114176	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage