CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP006943	Mannheimia varigena USDA-ARS-USMARC-1296 chromosome, complete genome	2 crisprs	DEDDh,DinG,csa3,cas2,cas1,RT,cas4,cas7,cas8c,cas5,cas3	1	6	3	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP006943_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006943_1

1314276-1314840

Orphan

Consensus_repeat	Method
GTTTCAACTCACAGCTACACGAAGGTAGCTGC	CRISPRCasFinder
GTTTCAACTCACAGCTACACGAAGGTAGCTGC	CRT
GTTTCAACTCACAGCTACACGAAGGTAGCTGC	PILER-CR

8 spacers

The CRISPR arrays of NZ_CP006943_1

>merge|NZ_CP006943|1|1314276-1314840|CRISPRCasFinder,CRT,PILER-CR
ATTTTAAGTTGCAGCTACGCGAAGGTAGCTGCTTTAAGTTGTAGCAGTCACACAACTAGCCATTCAGTTTCAACTCACAGCTACACGAAAGTAGCTGCTTGCAACGCATTTAAATGCGTGCGATTTTCCTTGTTTCAACTCACAGCTACACGAAAGTAGCTGCATCCGTCTTATGCCTTTTGGTCCGGTGATAAATGGTTTCAACTCACAGCTACACGAAGGTAGCTGCATGGTATCAAAACCATATTCACAACGTGGCAAATGTTTCAACTCACAGCTACACGAAGGTAGCTGCGTGTGCCGACATTTAACTGACCGCTCACATTATTGTTTCAACTCACAGCTACACGAAGGTAGCTGCTTATTACCTGACTTTTTAGAAATGCTGGACGATTTAGTTTCAACTCACAGCTACACGAAGGTAGCTGCTGCCTGCGATTAAGTCGGACATATGCACATCAATCGCGTTTCAACTCACAGCTACACGAAGGTAGCTGCCATCGACATCTTTCATTACCTCTTTTAGAGGTCCTGTTTCAACTCACAGCTACACGAAGGTAGCTGC

>NZ_CP006943|1|1|1314276-1314840|CRISPRCasFinder
ATTTTAAGTTGCAGCTACGCGAAGGTAGCTGC	TTTAAGTTGTAGCAGTCACACAACTAGCCATTCA
GTTTCAACTCACAGCTACACGAAAGTAGCTGC	TTGCAACGCATTTAAATGCGTGCGATTTTCCTT
GTTTCAACTCACAGCTACACGAAAGTAGCTGC	ATCCGTCTTATGCCTTTTGGTCCGGTGATAAATG
GTTTCAACTCACAGCTACACGAAGGTAGCTGC	ATGGTATCAAAACCATATTCACAACGTGGCAAAT
GTTTCAACTCACAGCTACACGAAGGTAGCTGC	GTGTGCCGACATTTAACTGACCGCTCACATTATT
GTTTCAACTCACAGCTACACGAAGGTAGCTGC	TTATTACCTGACTTTTTAGAAATGCTGGACGATTTA
GTTTCAACTCACAGCTACACGAAGGTAGCTGC	TGCCTGCGATTAAGTCGGACATATGCACATCAATCGC
GTTTCAACTCACAGCTACACGAAGGTAGCTGC	CATCGACATCTTTCATTACCTCTTTTAGAGGTCCT
GTTTCAACTCACAGCTACACGAAGGTAGCTGC

>NZ_CP006943|1|1|1314276-1314840|CRT
ATTTTAAGTTGCAGCTACGCGAAGGTAGCTGC	TTTAAGTTGTAGCAGTCACACAACTAGCCATTCA
GTTTCAACTCACAGCTACACGAAAGTAGCTGC	TTGCAACGCATTTAAATGCGTGCGATTTTCCTT
GTTTCAACTCACAGCTACACGAAAGTAGCTGC	ATCCGTCTTATGCCTTTTGGTCCGGTGATAAATG
GTTTCAACTCACAGCTACACGAAGGTAGCTGC	ATGGTATCAAAACCATATTCACAACGTGGCAAAT
GTTTCAACTCACAGCTACACGAAGGTAGCTGC	GTGTGCCGACATTTAACTGACCGCTCACATTATT
GTTTCAACTCACAGCTACACGAAGGTAGCTGC	TTATTACCTGACTTTTTAGAAATGCTGGACGATTTA
GTTTCAACTCACAGCTACACGAAGGTAGCTGC	TGCCTGCGATTAAGTCGGACATATGCACATCAATCGC
GTTTCAACTCACAGCTACACGAAGGTAGCTGC	CATCGACATCTTTCATTACCTCTTTTAGAGGTCCT
GTTTCAACTCACAGCTACACGAAGGTAGCTGC

>NZ_CP006943|1|1|1314342-1314840|PILER-CR
GTTTCAACTCACAGCTACACGAAAGTAGCTGC	TTGCAACGCATTTAAATGCGTGCGATTTTCCTT
GTTTCAACTCACAGCTACACGAAAGTAGCTGC	ATCCGTCTTATGCCTTTTGGTCCGGTGATAAATG
GTTTCAACTCACAGCTACACGAAGGTAGCTGC	ATGGTATCAAAACCATATTCACAACGTGGCAAAT
GTTTCAACTCACAGCTACACGAAGGTAGCTGC	GTGTGCCGACATTTAACTGACCGCTCACATTATT
GTTTCAACTCACAGCTACACGAAGGTAGCTGC	TTATTACCTGACTTTTTAGAAATGCTGGACGATTTA
GTTTCAACTCACAGCTACACGAAGGTAGCTGC	TGCCTGCGATTAAGTCGGACATATGCACATCAATCGC
GTTTCAACTCACAGCTACACGAAGGTAGCTGC	CATCGACATCTTTCATTACCTCTTTTAGAGGTCCT
GTTTCAACTCACAGCTACACGAAGGTAGCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006943.1\|WP_025217475.1\|1317719_1318595_-\|4-hydroxybenzoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|237229
NZ_CP006943.1\|WP_025217473.1\|1312703_1314179_-\|ribonuclease-G	unknown	unknown	gnl\|CDD\|183285
NZ_CP006943.1\|WP_038643146.1\|1309002_1309635_-\|DUF218-domain-containing-protein	unknown	unknown	gnl\|CDD\|225500
NZ_CP006943.1\|WP_025217480.1\|1323229_1324996_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP006943.1\|WP_025217483.1\|1331145_1332006_-\|divergent-polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|377404
NZ_CP006943.1\|WP_025217477.1\|1319415_1320783_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NZ_CP006943.1\|WP_025217474.1\|1315115_1317548_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl\|CDD\|237860
NZ_CP006943.1\|WP_025217467.1\|1304690_1305443_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187604
NZ_CP006943.1\|WP_025217471.1\|1309897_1310971_+\|homoserine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|234678
NZ_CP006943.1\|WP_025217479.1\|1321562_1323230_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP006943.1\|WP_025217472.1\|1311052_1312555_-\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP006943.1\|WP_025217465.1\|1302668_1303481_-\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|161792
NZ_CP006943.1\|WP_025217476.1\|1318587_1319349_-\|DeoR/GlpR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182827
NZ_CP006943.1\|WP_025217470.1\|1308139_1308976_+\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
NZ_CP006943.1\|WP_025217468.1\|1305677_1307216_-\|Na+/H+-antiporter-NhaC-family-protein	unknown	unknown	gnl\|CDD\|224671
NZ_CP006943.1\|WP_025217482.1\|1329267_1331136_-\|outer-membrane-protein-assembly-factor	unknown	unknown	gnl\|CDD\|223801
NZ_CP006943.1\|WP_025217478.1\|1320816_1321446_-\|high-frequency-lysogenization-protein-HflD	unknown	unknown	gnl\|CDD\|234690
NZ_CP006943.1\|WP_025217469.1\|1307648_1308068_+\|H-NS-histone-family-protein	unknown	unknown	gnl\|CDD\|182380
NZ_CP006943.1\|WP_025217481.1\|1325098_1329202_-\|translocation/assembly-module-TamB	unknown	unknown	gnl\|CDD\|225463
NZ_CP006943.1\|WP_025217466.1\|1303480_1304671_-\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288

Protein	Function_ID	Function_description	E-value
NZ_CP006943.1\|WP_025217475.1\|1317719_1318595_-\|4-hydroxybenzoate-octaprenyltransferase	gnl\|CDD\|237229	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase.	7.69589e-169
NZ_CP006943.1\|WP_025217473.1\|1312703_1314179_-\|ribonuclease-G	gnl\|CDD\|183285	PRK11712, PRK11712, ribonuclease G; Provisional.	0
NZ_CP006943.1\|WP_038643146.1\|1309002_1309635_-\|DUF218-domain-containing-protein	gnl\|CDD\|225500	COG2949, SanA, Uncharacterized membrane protein [Function unknown].	1.23081e-77
NZ_CP006943.1\|WP_025217480.1\|1323229_1324996_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP006943.1\|WP_025217483.1\|1331145_1332006_-\|divergent-polysaccharide-deacetylase-family-protein	gnl\|CDD\|377404	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase. This family is divergently related to pfam01522 (personal obs:Yeats C).	1.28053e-87
NZ_CP006943.1\|WP_025217477.1\|1319415_1320783_-\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NZ_CP006943.1\|WP_025217474.1\|1315115_1317548_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl\|CDD\|237860	PRK14939, gyrB, DNA gyrase subunit B; Provisional.	0
NZ_CP006943.1\|WP_025217467.1\|1304690_1305443_-\|SDR-family-oxidoreductase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.49072e-147
NZ_CP006943.1\|WP_025217471.1\|1309897_1310971_+\|homoserine-O-acetyltransferase	gnl\|CDD\|234678	PRK00175, metX, homoserine O-acetyltransferase; Provisional.	0
NZ_CP006943.1\|WP_025217479.1\|1321562_1323230_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP006943.1\|WP_025217472.1\|1311052_1312555_-\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP006943.1\|WP_025217465.1\|1302668_1303481_-\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|161792	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. [Amino acid biosynthesis, Aromatic amino acid family].	1.01264e-125
NZ_CP006943.1\|WP_025217476.1\|1318587_1319349_-\|DeoR/GlpR-family-transcriptional-regulator	gnl\|CDD\|182827	PRK10906, PRK10906, DeoR/GlpR family transcriptional regulator.	6.46621e-118
NZ_CP006943.1\|WP_025217470.1\|1308139_1308976_+\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	2.06742e-170
NZ_CP006943.1\|WP_025217468.1\|1305677_1307216_-\|Na+/H+-antiporter-NhaC-family-protein	gnl\|CDD\|224671	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion].	5.48422e-94
NZ_CP006943.1\|WP_025217482.1\|1329267_1331136_-\|outer-membrane-protein-assembly-factor	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	7.16415e-160
NZ_CP006943.1\|WP_025217478.1\|1320816_1321446_-\|high-frequency-lysogenization-protein-HflD	gnl\|CDD\|234690	PRK00218, PRK00218, lysogenization regulator HflD.	1.21106e-99
NZ_CP006943.1\|WP_025217469.1\|1307648_1308068_+\|H-NS-histone-family-protein	gnl\|CDD\|182380	PRK10328, PRK10328, DNA-binding protein StpA.	2.55897e-33
NZ_CP006943.1\|WP_025217481.1\|1325098_1329202_-\|translocation/assembly-module-TamB	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP006943.1\|WP_025217466.1\|1303480_1304671_-\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0

>NZ_CP006943.1|WP_025217473.1|1312703_1314179_-|ribonuclease-G
MSSTELLVNVTPSETRVALVENGLLKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHASDIVSHTECVDENEKKQFVVKDISELVREGQDIVVQVVKDPIGTKGARLTTDITLPSRYLVFMPENSHVGVSQRIESETERERLKALVEPYCDELGGFIVRTAAEEAHEESLKQDVAFLKRLWRKVLERKTKYPAKSMLYGELALAQRVLRDFIGTHINAVWIDSKITCEQVKEFLTEFMPELTNSVSLYTGAKTLFDAYGVEESIQKALNKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGHRNLAHTIFNTNIEATQVIAHQLQLRNLGGIIIIDFIDMQEEEHRNLVLQSLQNALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERILCCDCPECQGRGTVKTVETVSYEIMREIVRVHHLFKAEKMHVYASKEVADYLINEESHAMLAELQAFIGAKIEIKVEPYYHQEQFDVVVM
>NZ_CP006943.1|WP_025217472.1|1311052_1312555_-|lysine--tRNA-ligase
MSAVENQELDLNGEMLARREKLTKIREQGNAFPNTFRRNALAKDLHAQYDEVEGEALKEQNIQVKVAGRIMLKRVMGKASFFTIQDVSGAIQLYVARDNLAESVYEEKVSLWDLGDIIGVEGTLFKTKTGELTVRCSEVQLLTKALRPLPDKHHGLTDLETRYRQRYLDLISNEESRRTFMIRSQVVSGIRKFFLERDFIEVETPMLQVIPGGAAAKPFVTHHNALDVDMYLRIAPELYLKRLVVGGFERVFELNRNFRNEGVSVRHNPEFTMIEYYQAYADYHDLMDNTEELLRQLALDILGTTDVPYGEYVFDFGKPFERITMHDAIVKYGNGIKREDLDSFEKSVEIAKGLGIEIQKSWGLGSVINAIFEEVAEHQLIQPTFLMAHPAEISPLARRNDENPEVTDRFELFIGGREIGNGFSELNDAEDQAERFDAQVAAKDAGDDEAMFKDEDFVVALEHGLPPTAGEGLGIDRLAMIFANAPSIRDVILFPAMRQK
>NZ_CP006943.1|WP_025217471.1|1309897_1310971_+|homoserine-O-acetyltransferase
MAQHITLFRETPLSLSLGGELSPINVAYQTYGVLNADKSNAVLICHALTGDAEPYYDTATEKGWWQDFIGKGLAFDTEKHFFICSNVLGGCKGTTGPASINPKTNKPYGSQFPIITVQDIVNVQKALIDYLEIPTLHAVIGGSFGGMQATQWGISYPDKVRNIINLCSSLTLSAEAIGFNHVMRQAIINDPYFNNGDYYDGIAPDNGLKIARMLGMLTYRTDMQLAKAFGRETKQQGQIWGDHFQVESYLSYQGTKFLGRFDANTYLRLLRALDLYDPALGYENEEAALKRIKANYVFITVTSDQLFKQVDVYKSKQKLEQAGVNLDFHEFHSDFGHDAFLVDYDFFEPMIRKGLEK
>NZ_CP006943.1|WP_038643146.1|1309002_1309635_-|DUF218-domain-containing-protein
MVIKVFKCLSVLVLLLILGLLAVDAITSYIIRDKIYTDVKKLPHREYAVVLGTAKFYSKDVINRYYKYRLDAAKQLVQSEKVDLLLLSGDNKTPYYNEPKTMTNDLLKMGVPQRQIKQDYAGYTTFDSIIRATEVYKLPPFTIVSQKFHCERALFIAKFKNIDAICYAAKYPEGAYQVRLREILARAVMVFNLLMGKTPETLEDIPSKEK
>NZ_CP006943.1|WP_025217470.1|1308139_1308976_+|formyltetrahydrofolate-deformylase
MIEHKILLTECPDDTGLVAKITNICYKHQLNIIKNSEFVDNETKRFFMRTELNGIFNDNTLLADLEFTLPEGSIYKLLPKQRKRIIILVTKEAHCLGDLLMKNYYGGLDVEIAAVIGNHDTLKELVERFDVPFHLVSHENLTRVEHDKLLADKIDEYAPDYIVLAKYMRVLNPEFVARYPDRVVNIHHSFLPAFIGAKPYQRAYERGVKIIGATAHFVNDELDEGPIIMQNVINVDHTYTAEAMMRAGRDVEKTVLSQALELVLSDKVFVYKNKTIIL
>NZ_CP006943.1|WP_025217469.1|1307648_1308068_+|H-NS-histone-family-protein
MSDLKSLLNIRTLRALAKDLALEQLRSIAEKLDTIIAEKEEEIRKEEQERAKQLESLNKYTEMLKQDGLSIDELAQLLADKVIKGRKTAKARKAVAPRPAKYKFVDAEGNEKTWTGQGRTPKALQKALDKGKKLEDFAI
>NZ_CP006943.1|WP_025217468.1|1305677_1307216_-|Na+/H+-antiporter-NhaC-family-protein
MNLVDYSTSLWSVLPAVIALILAIVTRKVIVSLSIGIVFGAFMLTNSSFLDALTYIKNSVVSLVYKGSEEGLNTNNVNIILFLILLGVLTSLLSISGSNQAFANWAQKRIKGKRGAKLMAAGLVFFTFIDDYFHSLAVGAIARPVTDKFHISRAKLAYILDSTAAPMCVLMPISSWGAYIITLIAGLLATHSITDYSPLGAFMTMSAMNFYAIFAMIMVFFVAYFSFDIGPMTRFERQAEHLAEVEEETIEVKGRMRNLVFPIIALIVVTVAMMIKTGADALAESNTPFSILGAFENTTVGISLVAGGIAALIVATICIMASGHISLKNYVRAYGLGVKMMSGAITILFFAWTINGVVSDMQTGKYLSGLVGEHIAAGFLPAILFVLAAFMAFSTGTSWGTFGIMLPIGAAMAVHSEPALIIPCLSAVMAGAVCGDHCSPVSDTTILSSTGAQCNHMDHVISQLPYALLVAAASIVGYLVVGFTQSALLGFVTTSAVMAALILIFKAKKQKK
>NZ_CP006943.1|WP_025217467.1|1304690_1305443_-|SDR-family-oxidoreductase
MKTALVTGATAGFGLAICKLLIQSGYKVIGTGRRAERLAELHLQFGEHFRPLAFDIQDPQAVQTALESLPQDWQQIDLLVNNAGLALGLEPAHKVDLNDWYQMIDTNIKGLVTMTRLMLPQMVERNSGHIINIGSIAGTYPYPGGNVYGGTKAFVKQFSLNLRSDLAGTKVRVSNVEPGLCGGTEFSNVRFKGDDEKAAKIYENVEFVRPEDVANIVLWLNQQPEHVNINRVEVMPVAQSSSALNIARNL
>NZ_CP006943.1|WP_025217466.1|1303480_1304671_-|tryptophan-synthase-subunit-beta
MSDTLLNPYFGEFGGMYVPEILVPVLKQLEQAFVEAQQDPEFQAEFADLLKNYAGRPTALTLCRNLTKGTKTKLYLKREDLLHGGAHKTNQVLGQILLAKRMGKTRIIAETGAGQHGVATSLACAMLGMPCVVYMGAKDVERQSPNVFRMRLMGAEVIPVEKGSCSLKDACCEAMRDWAANYETTHYLIGTAAGPHPFPTMVREFQKMIGEETKRQILEKEDRLPDAVIAAVGGGSNAIGMFADFIEESSVKLIGVEPAGKGIETGEHGAPLKHGTTGIYFGMKSPIMQDKDGQIEESYSISAGLDFPSVGPQHAYLNATGRADYVSITDQEALDAFQALAKNEGIIPALESSHALAYALKLIAQNPDKEQLLVVNLSGRGDKDIFTVDKILNGGN
>NZ_CP006943.1|WP_025217465.1|1302668_1303481_-|tryptophan-synthase-subunit-alpha
MSRFDTLFTALKAKNEGAFVPFVTLCDPDFDRSFEIIETMIANGADALELGFPFSDPLLDGPVIQAANKRALDAGYSTDACFELIGKIRAKYPDIPIGLLLCANLIFVPTAEVFFKRCKENGVDAVLIADLPLLAAEEFVPTAKKHGIQPVFICPPNADQNTIERIAKLTEGYTYLVSRAGVTSAENQAHASNLDNLVEGLKRSNSAPILQGFGIAKPEQVKEALALGCDGAISGSAIVKIIERNLANQANLLKELGEFVKAMKEASRRE
>NZ_CP006943.1|WP_025217474.1|1315115_1317548_-|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MSEQTQLTSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIIVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLAVIGDTQKTGTSVRFWPSLDIFKNKTEFEYKILSKRLRELSFLNSGVSIKLIDERDGKEEHFKYEGGIKAYVEYLNEGKTHIHNTPFYLSTEKDGIGVEISLQWNDSYNENVYCFTNNIPQRDGGTHLAGFRGALTRALKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRGAVESSMNEALADYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGTGIGRDDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIENGYIYIAQPPLYKVKKGKQERYIQDSEEMSQYEIDIALEGAGLYVSEDAPALSGVALENLISQYNNVQKLIERLNRRYPTLLLNELIYSKPLSVEFAKNEANITAWSEQFVAKLMEKEVGGSFYRASVEFNTERQIYEPEIVVTTHGMDTTYRIDYNFISSNEYARIVALGNELNDLLTDSAYVVRGERRQEISSFAEALDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAIAADKLFSTLMGDEVEPRRDFIETNALYAQIDV
>NZ_CP006943.1|WP_025217475.1|1317719_1318595_-|4-hydroxybenzoate-octaprenyltransferase
MNKGSFFSKQKWTAYAQLMRFDKPIGTLLLLHPTLWALFVAADGMPPVSILLIFTLGVIVMRAAGCVINDYADREIDGHVKRTSQRPLATGRVTTTEAKIIFAVLLLFAFLLDLMLNRYAFLLSFFAVFLAVIYPFMKRFTHLPQVVLGMAFGWSIPMAFGAVSEALPFECWLLFLANLAWTVAYDTQYAMVDRDDDLRIGVKSTAILFAQYDNKIIALLQFITLILLSLVGVVQEYNIGYFIVLALSATLFIYQCWLTKKRERSECFKAFLNNHYFGLGVFIAILVGIYF
>NZ_CP006943.1|WP_025217476.1|1318587_1319349_-|DeoR/GlpR-family-transcriptional-regulator
MKQANRHKRIIDLVNLLGYVSTEELVAQMNVSPQTIRRDLNEMAENNLIRRHHGGAAAPSNTENSDYTHRKQFFSQEKNAIAQQVAKLIPNGASLFLDIGTTSEAVALALLSHKNLIVVTNNLNAAHILMKNPDCQITVAGGHLRSDGGLIGEETVRFINQFRLDFGILGISAVDLDGSMLDYDYHEVQVKRALMECSRQVLLVTDHSKFSRNAIVRLGNVKEVNYLFTDTDLPLELQTHLSQSDVIVKICNE
>NZ_CP006943.1|WP_025217477.1|1319415_1320783_-|adenylosuccinate-lyase
MELTALTALSPIDGRYQDKVSSLRPVFSEFGLLKFRVEVEVRWLQKLASHEQIKEVPAFSEKANDYLNQIVANFSLEDANRIKTIERTTNHDVKAVEYFLKEKCEALPELQAVSEFIHFACTSEDINNTSHALMLKTARAEVLLPEWKKLIDAIVELAKRYQSIPLLSRTHGQPASPTTIGKEMANVAYRLQRQYKQLENLEILGKINGAVGNYNAHLSAYPEIDWHTFSQEFVESLGVTWNPYTTQIEPHDYIAEFFDCVARFNTIIIDFDRDMWGYIALNHFKQRTVAGEIGSSTMPHKVNPIDFENSEGNLGLANAVMAHLGQKLPISRWQRDLTDSTVLRNLGVGLGYALIAYASTLKGISKLEVNEQHLRDELNQNWEVLAEPIQTVMRRYGIEKPYEKLKELTRGKRVDEAAMREFIEKLDIPEHEKARLKEMTPATYIGYAVELVDKL
>NZ_CP006943.1|WP_025217478.1|1320816_1321446_-|high-frequency-lysogenization-protein-HflD
MADYHDITIAYAGVCQAANLVQQFAHKGTADRDAFRQSIRSLLVTQPESTLSVFGDDLSHIQMGLETALSQTGGGNGKLDTEVGRYWISLIALSQKLDKNPEAKQQLAQRLQQIERQLPLYEGDVLADQMIANLAAIYSDIISPLGTKIHVMGMQDYLVRPDIQHKIRASLLAGIRAAILWQQVGGSRWQFLFSRKKIFNQAQQLYRQI
>NZ_CP006943.1|WP_025217479.1|1321562_1323230_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MKSLFPFFSLYQTHFGRLLLGIVLAILGLAASIGLLSLSGWFLAASFLAANAIIFNFFYPAGGVRGLAIFRTASRYFEKLVTHDATFRVLANLRVTVFKKLIPLSPSGLNRFRNSELLNRLVADVDTLDTLYLNLISPFVSAVMIITFMAIGLSFVSVPLMLIICGTLLALLLIIPTVFYRLGLKLGKKAVQSRANYRSQFIEWVQLNAEFLLFGNLRQAAEKLQHTEREWLNAQGQESRLSGLSSGLLMLSNGVLTCVVIYLVSTAINVPTAQYPEALIALVVFCVMASNEILAPIGIAFLHLGQVITAAERINEITEQQPNVKFNGSAKWQNLSQNQPLVRFENVNFAYLNGEQQVLNNLSFEVLKGQKVAILGKTGSGKSTIFQLLNRNYDPASGQIWLNNCKIEYFPEQTLRSKLVTLSQRVHIFSQTLKDNLLMGNATATDEQMIEVVQKVGLGYLLETEGLKLWLGEGGRPLSGGEQRRLGLARLLLSSAELVLLDEPTEGLDRETEQQILNLILTHCAERTLLMITHRQSGLDKFDVVYRMDSGRLLN
>NZ_CP006943.1|WP_025217480.1|1323229_1324996_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MEKQRQRELQKWLKSQQKVIKKYMHLNVLLGLIGSLAMIAQMWLLATMLHKMIVQKQSPSMFLTEIGLLFLCFAIRACVIFMRERVGFKAGQTLRLHLRELILAKMEAVGPMTIQQKPAGSWAALMLEQVENLHNFYARYLPQQFLSLLVPLLILCFVFPTNWAAGLILLATMPLLPLFMILAGLKAVEANQRNIGILSRISGQFLDKLKGLETIRLFGQAEKQTEQIYQSTEDFRISTMDVLKMAFLSSAVLEFFTSVSIAVMAVYFGFIFLGELDFGYYGTGVSLFIGFFCLMLAPEFYQPMRELGVFYHDKAAAIGAADSIEKFLNEEVKTQCSHLQKSMENQPLVIEANACVILSPQGKALTQPLNFKLNANQHIALVGQSGAGKTSLMNMLLGFLPYEGSVKINGVELRELNLTEWRAKLAWVGQNPQLMRGSLKENILLGNATATEAEIAEALRLSKADEFVSRLGLEHQVQDSNIGISGGQAQRIAIARALLRRYELLLLDEPTASLDMESEQQVLEALHHLSREQTTLMITHRVEDLAKCDEIWVMKQGQIIQQGSFAELEHTGFFAELLRNELVHQGEI
>NZ_CP006943.1|WP_025217481.1|1325098_1329202_-|translocation/assembly-module-TamB
MMNEKKEIIDSQEIQAQQEKTHKKLKSKWRFLKWGICIFSILLLVLILFLCTGVGQRKTVQWVDQFVEPLQIGKVEGSIQDGLQLFDTQFITDGVNVQVGKADLHIDFNCLIKYEVCLNHFNVKDTKVVIDTRKLPPSQEKEDNTPFTELNLPLGISAKNITLENIDVSVDDMDIHLNHFTTSISGKGREVIVNPTTLDGLKLLLALKVEEELEPQAVDSDAENAKVAVTRNPANAQEAVDQVVQEAVEKTAEKVVEEFHQLQGKTTAEAEQQPHNKVDWAEIKAQLEQPILNKDIRLSLPLDLTIEQIYIANVSVAQKAQDEKGNLVEPISLINVNALQLQAQAKDELVTLQRLDFKSDQGDLTATGTLSLKDNYPLNWQLEGVEVKDAKVKLPFSHIDATLSGELYNKTMLNVKTEGAIKATLDGHIELATPKVPFDLMLKSESAKYPFAPQAGDDVLTLENIDIHLNGSPLAYNLAAKVSAKGMGIPLSSADLKGNGELTHFNIHDLLLNTLEGNAQLAGLIDWTEGVEWNSRFKLNNINTKALVPDWAAVLSGSLSTQGYAGRGNTGADWKADVSNIDIKGSLHKKNLQLTGNLNANNQQLLDVPGLSLVYGENKIDLKGLLGEKSDFYADIKAPNLQGLVPNLKAGINGNVKLSGKLAEPNLDLDLVASNVSYEQFKLQHLTAKGKITTEQTIQGDVELGLRQFAYNDIKVESATLLAKGNEANHSLKLTSKGNPAGADLQISGKFDRLQQIWEGQLSQVAIQSTEFGRFQTDKAVNVKYDNKAINANVSAHCWHNPKIHLCFPTAFNAGQEGKVPFDIHNFNLAVLQDYLDNTSQISGIVNAKGDAAWFKNKQPQVNLDLTSNSIKFVQKMEGGKTFPLTVSPLKINLKMSDNNLALKSNLRVENNGTLTTDIVMRDLNNARTLSGNINIDQLTLKLIHPLLERGDVVDGRINARLTVSGQATSPLLHGTLNLTGLKARSVTMPFDVTGGNLAMNFHGATSTLNGKLQTKESELRLEGDADWRNINAWKTRVHAQANRFRVDIPNLARVEISPDIQVVATSTLLTLSGNIDVPWARIEVEQLPEQAVSVSGDEVIMDGSARNKVPFNQRNIPTQTAGGMAIDADIKINIGNDVKLKAYGLNSNLNGLLSVRQGKQGLGLYGQVRLDEGRFAAYGQDLLIRKGNISFAGSPSQPYLDIEAVRNPDAMEDPTITAGVRVTGLADAPNVKVFSDPAMSQNEALSYILTGRSLESSGDAGSSNAVAAALLSMSLSKSSKLVGDVGSAFGLKDLSVSTAGIGDNTKVEFSASLSPRFRVKYGVGVFAPLTELTLRYNLTPRLYLQWVSNVNQAVDLMYRFQFDKLF
>NZ_CP006943.1|WP_025217482.1|1329267_1331136_-|outer-membrane-protein-assembly-factor
MKTKLHFLTICCLVAFASMAQAEQPQTNVQAQNNQQDRITDVDQERIGELEDTLSDDLDDEEKLEALVDLEVKGIHDKEAKKNVDLYLAQISNEYADGSERHQYLVQTTVDKALRALGYYNSQYQFVQLPRSGKKPLLVLNVELDKETVKIDETDIVLQGEAKNDEDFMALIKKAPKQGSRLNHKIYENFKGNIESNAFSKGYFDGHWLYHRLEVYPTDHKADWRLGYDSGIRYRYGQINFVDSQIKEEYLRNILKINSGEHYFANDLSNLTQDYLSSNWFSSVMVEPHLNEQDKTVDLNVLFQPKKKNEVEIGIGYETEVGPRLQFNWKKPWRNKRGHSIDTRTYISAPEQRFEFGYNIPLKKDPLHYYYQISGTVENEDQKDTKSTAASFSLQRFWTRTTGWSFSAGVRARYDSFTQANDKFKTLLVYPTASLNRTRTDGKPYPLWGDSQKLTVNWGSKIFGSDVNFYSYKASTSFVRTYAGNHRFYLRAELGYLKANQFERIPPALRFFAGGDMSVRGFGYKDISPRDPANGKRVGGSHLATGTLEYQYQVYPNWWGAAFYDVGLAANKFETKQLHHGTGLGVRWASPIGAIKFDVGMPVKSPDNKRGFQIYIGLGSDI
>NZ_CP006943.1|WP_025217483.1|1331145_1332006_-|divergent-polysaccharide-deacetylase-family-protein
MLKQIYKRLNFTTFLQITLILQLFLLFAPLAQAAKIAIVIDDVGYRVKEDREILSLPKEVSVAIIPDAPYATERARESYAQKRDILIHLPMEPKSRQFIEKNSIKIGDGEEKIRKLIGDSRGQVPYAIGLNNHTGSGATADVATMQPLMKVLKEQSLFFLDSKTIGNSIAAKTAREFGIPTLERNIFLDDSDELADVKKQFSQSIQYARRNGVAVVIGHPRKNTIAILKQHLATLPADIELIGIGTLWRNEKVVPEKPLIMLFEQEPALSSIPPYESIPLLRGIPR

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Crispr_ID: NZ_CP006943_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006943_2

1496013-1496444

TypeI

Consensus_repeat	Method
GTTTCAACTCACAGCCACGTGGAGGTGGCTGC	CRISPRCasFinder
GTTTCAACTCACAGCCACG	CRT
GGTTTCAACTCACAGCCACGTGGAGGTGGCTGC	PILER-CR

6 spacers

cas2,cas1,RT,cas4,cas7,cas8c,cas5

The CRISPR arrays of NZ_CP006943_2

>merge|NZ_CP006943|2|1496013-1496444|CRISPRCasFinder,CRT,PILER-CR
ATTTCAACTTATGGCTACGTGAAGGTAACCACTTTTTATGTCTTTAACAGATAGAGAAAAAGGGGTTGTTTCAACTCACAGCCACGCGGAGGTGGCTGCTATTTCTTGGTCTGTTGGCGTTTTAAGTGATGGGTTTCAACTCACAGCCACGCGAACGTGGCTGCTCTTTGAGTTTAATCAACACTTCATCGTAGCTTTGGTTTCAACTCACAGCCACGTGGAGGTGGCTGCGCAGCTCCAATTAATGCCACACCTAATACAGCCTGGTTTCAACTCACAGCCACGTGGAGGTGGCTGCGGAGTTGATGAGTGAAGACTTTGACGAAGTGGACGTTTCAACTCACAGCCACGTGGAGGTGGCTGCTCCAGCGAATTACTGCAAAAATTAGGCGTTCAAGCGGTTTCAACTCACAGCCACGTGGAGGTGGCTGC

>NZ_CP006943|2|2|1496013-1496444|CRISPRCasFinder
ATTTCAACTTATGGCTACGTGAAGGTAACCAC	TTTTTATGTCTTTAACAGATAGAGAAAAAGGGGTT
GTTTCAACTCACAGCCACGCGGAGGTGGCTGC	TATTTCTTGGTCTGTTGGCGTTTTAAGTGATGG
GTTTCAACTCACAGCCACGCGAACGTGGCTGC	TCTTTGAGTTTAATCAACACTTCATCGTAGCTTTG
GTTTCAACTCACAGCCACGTGGAGGTGGCTGC	GCAGCTCCAATTAATGCCACACCTAATACAGCCTG
GTTTCAACTCACAGCCACGTGGAGGTGGCTGC	GGAGTTGATGAGTGAAGACTTTGACGAAGTGGAC
GTTTCAACTCACAGCCACGTGGAGGTGGCTGC	TCCAGCGAATTACTGCAAAAATTAGGCGTTCAAGCG
GTTTCAACTCACAGCCACGTGGAGGTGGCTGC

>NZ_CP006943|2|2|1496013-1496431|CRT
ATTTCAACTTATGGCTACG	TGAAGGTAACCACTTTTTATGTCTTTAACAGATAGAGAAAAAGGGGTT
GTTTCAACTCACAGCCACG	CGGAGGTGGCTGCTATTTCTTGGTCTGTTGGCGTTTTAAGTGATGG
GTTTCAACTCACAGCCACG	CGAACGTGGCTGCTCTTTGAGTTTAATCAACACTTCATCGTAGCTTTG
GTTTCAACTCACAGCCACG	TGGAGGTGGCTGCGCAGCTCCAATTAATGCCACACCTAATACAGCCTG
GTTTCAACTCACAGCCACG	TGGAGGTGGCTGCGGAGTTGATGAGTGAAGACTTTGACGAAGTGGAC
GTTTCAACTCACAGCCACG	TGGAGGTGGCTGCTCCAGCGAATTACTGCAAAAATTAGGCGTTCAAGCG
GTTTCAACTCACAGCCACG

>NZ_CP006943|2|2|1496211-1496444|PILER-CR
GGTTTCAACTCACAGCCACGTGGAGGTGGCTGC	GCAGCTCCAATTAATGCCACACCTAATACAGCCT
GGTTTCAACTCACAGCCACGTGGAGGTGGCTGC	GGAGTTGATGAGTGAAGACTTTGACGAAGTGGA
CGTTTCAACTCACAGCCACGTGGAGGTGGCTGC	TCCAGCGAATTACTGCAAAAATTAGGCGTTCAAGC
GGTTTCAACTCACAGCCACGTGGAGGTGGCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006943.1\|WP_025217625.1\|1487924_1489430_+\|apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|234721
NZ_CP006943.1\|WP_025217626.1\|1489475_1489940_-\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NZ_CP006943.1\|WP_025217628.1\|1491257_1491905_-\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455
NZ_CP006943.1\|WP_025217629.1\|1491914_1493000_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|273015
NZ_CP006943.1\|WP_025217621.1\|1481071_1484596_-\|exodeoxyribonuclease-V-subunit-beta	unknown	unknown	gnl\|CDD\|236784
NZ_CP006943.1\|WP_025217637.1\|1500827_1501691_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP006943.1\|WP_025217624.1\|1486953_1487868_+\|CNNM-family-magnesium/cobalt-transport-protein-CorC	unknown	unknown	gnl\|CDD\|226910
NZ_CP006943.1\|WP_025217639.1\|1503475_1504153_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP006943.1\|WP_025217636.1\|1500156_1500828_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP006943.1\|WP_025217623.1\|1486206_1486815_-\|DUF2057-family-protein	unknown	unknown	gnl\|CDD\|234990
NZ_CP006943.1\|WP_025217630.1\|1493509_1495912_+\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
NZ_CP006943.1\|WP_025217635.1\|1498645_1500124_-\|cobalt-transporter	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|238824
NZ_CP006943.1\|WP_025217631.1\|1496641_1496935_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP006943.1\|WP_025217634.1\|1498454_1498637_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006943.1\|WP_025217627.1\|1490046_1491246_-\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|181774
NZ_CP006943.1\|WP_025217640.1\|1504345_1505209_-\|DUF4231-domain-containing-protein	unknown	unknown	gnl\|CDD\|375614
NZ_CP006943.1\|WP_025217622.1\|1484661_1486053_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|234981
NZ_CP006943.1\|WP_025217633.1\|1498043_1498385_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006943.1\|WP_025217632.1\|1496984_1497998_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP006943.1\|WP_025217638.1\|1501700_1503479_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|187887

Protein	Function_ID	Function_description	E-value
NZ_CP006943.1\|WP_025217625.1\|1487924_1489430_+\|apolipoprotein-N-acyltransferase	gnl\|CDD\|234721	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.	0
NZ_CP006943.1\|WP_025217626.1\|1489475_1489940_-\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	9.6766e-80
NZ_CP006943.1\|WP_025217628.1\|1491257_1491905_-\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	2.50169e-115
NZ_CP006943.1\|WP_025217629.1\|1491914_1493000_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	1.80499e-132
NZ_CP006943.1\|WP_025217621.1\|1481071_1484596_-\|exodeoxyribonuclease-V-subunit-beta	gnl\|CDD\|236784	PRK10876, recB, exonuclease V subunit beta; Provisional.	0
NZ_CP006943.1\|WP_025217637.1\|1500827_1501691_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.183e-154
NZ_CP006943.1\|WP_025217624.1\|1486953_1487868_+\|CNNM-family-magnesium/cobalt-transport-protein-CorC	gnl\|CDD\|226910	COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism].	4.88391e-148
NZ_CP006943.1\|WP_025217639.1\|1503475_1504153_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.40311e-113
NZ_CP006943.1\|WP_025217636.1\|1500156_1500828_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	8.36434e-41
NZ_CP006943.1\|WP_025217623.1\|1486206_1486815_-\|DUF2057-family-protein	gnl\|CDD\|234990	PRK01904, PRK01904, DUF2057 domain-containing protein.	2.67853e-67
NZ_CP006943.1\|WP_025217630.1\|1493509_1495912_+\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP006943.1\|WP_025217635.1\|1498645_1500124_-\|cobalt-transporter	gnl\|CDD\|238824	cd01646, RT_Bac_retron_I, RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.	5.01345e-30
NZ_CP006943.1\|WP_025217631.1\|1496641_1496935_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.35188e-28
NZ_CP006943.1\|WP_025217627.1\|1490046_1491246_-\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	gnl\|CDD\|181774	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
NZ_CP006943.1\|WP_025217640.1\|1504345_1505209_-\|DUF4231-domain-containing-protein	gnl\|CDD\|375614	pfam18184, SLATT_3, SMODS and SLOG-associating 2TM effector domain 3. The SLATT domain contains two transmembrane helices. SLATT domains are generally predicted to function as pore-forming effectors in a class of conflict systems which are reliant on the production of second messenger nucleotide or nucleotide derivatives. SLATT domains are predicted to initiate cell suicide responses upon their activation. This SLATT family is always N-terminally fused to the SLATT_1 family, and is typically operonically linked to either inactive TIR domains or SLOG domains which could act as regulators of the SLATT channels.	1.00097e-44
NZ_CP006943.1\|WP_025217622.1\|1484661_1486053_-\|MATE-family-efflux-transporter	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	5.02795e-173
NZ_CP006943.1\|WP_025217632.1\|1496984_1497998_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP006943.1\|WP_025217638.1\|1501700_1503479_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	0

>NZ_CP006943.1|WP_025217630.1|1493509_1495912_+|endopeptidase-La
MAPRKKKAIELPLLPLRDVVVFPYMVMPLFVGREKSIQALRSAMDSNKQLFLVTQQDPNKEDPSKDDMYSVGVTANIIQMLNLPDGTVKVLVEGQTRAKIEQIHDDENGFWAAIQPIYSEYDEENEELKTIAKTTSTEFENYVKNNKKIPAEIIPKLQKITLEDRLADTIASNLIAPVKKKQELLEQPNLIARFEALLIAMATEMDTLETETRIRNRVKQQMEKNQRDYYLNEQIKAIQKELGNNDDVEQSELDKLKEKIDAAKLPTDVKDKLDGEFRKLKAMPQSSSEATVVRTYIDWILQMPWHKKSAVKKDLAKAQEVLDKDHYGLERVKDRIVEYLAVQSRLNKLKGPILCLVGPPGVGKTSLGQSIANATGRKYVRMALGGVRDEAEIRGHRRTYIGAMPGSLMMKMAKVGVRNPLFLLDEIDKMAQDMRGDPASALLEVLDPEQNKAFNDHYLEVDYDLSDVMFVATSNSMNIPPALLDRMEVIRLSGYTEDEKMHIARDHLLAKQQENNGLKESELIIEDSAILSIIRYYTREAGVRGLEREIAKICRKAVKALVLDKKLKSIKVTESNIEDYLGVKRFDYGKMDSQNRIGEVTGLAWTEVGGDLLTIETASVAGKGKFSYTGSLGDVMKESIQAAMVVVRSRADKLGIAADFHEKRDIHVHVPDGATPKDGPSAGIAMCTALISSLTGNPVRKEVAMTGEISLRGKVLPIGGLKEKLLAAHRGGITTVIIPKENEKDLEEIPENAKAALRIHAVETIDEVLAIALENPPMGIEVLPKAEIKVKKSRTKATVQ
>NZ_CP006943.1|WP_025217629.1|1491914_1493000_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MTDAKYMAYAIELAKKAQGWTNPNPLVGCVIVKDGNIVAESYHEKYGEWHAERNAILRSEQDLTGATAYVTLEPCCHYGRTPPCSDLLIERGIKKVFIGSRDPNPLVSGKGAKQLRAAGVEVVEDFMRAECDELNPIFFHYIQTKRPYVLLKYAMTADGKIATSTGESKWITGEQARAKVQETRHKYSSIMVGVETVLADDPMLNSRMPNAKQPVRIVCDSQLRTPLDCKLVQTAKEYRTVIATLNDDTKAHEAYQQLGVDIVVTKADNKRVDLPDLLQKLGEMQIDSLLIEGGSNLNFSALKSGCVNRVHCYIAPKLIGGKEAKTPIGGEGISNLAEAVKLELKSTELIGDDILLDYVVK
>NZ_CP006943.1|WP_025217628.1|1491257_1491905_-|riboflavin-synthase
MFTGIIEEVGQIAQIKKQGEFAVVTVKAKKVLTDVQLGDSIAVNGVCLTVTSFTKEQFTADVMSETLKRTSLGELSLNSPVNLERAMAANGRFGGHIVSGHIDGTGTVAEITPADNSTWYRIKTSPKLMRYIIEKGSITIDGISLTVVDCDAESFRVSIIPHTIKETNLGSKKIGSLVNLENDIVGKYIEQFLLKKEPENQPSKLTVDFLKNAGF
>NZ_CP006943.1|WP_025217627.1|1490046_1491246_-|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II
MFKFSTVEEAIQAIAAGKIILVSDDADRENEGDFICAAEFATPENINFMAKYGKGLICTPISTEIAERLDFHPMVVVNKDNHQTAFTVSVDHIETGTGISAFERSLTCLKMLDESTKPEDFRRPGHVFPLVAKDGGVLVRNGHTEATVDLARLAGLKPAGLCCEIMAEDGTMMQMPELQAFAQKHNMPFITIQQLQEYRRKHDSLVDEVSVVKMPTKYGEFKAHSFVETLSGKEHVALVKGEIGNGENVLCRIHSECLTGDAFGSQRCDCGQQFAAAMSQVEAEGRGVVLYLRQEGRGIGLINKLRAYELQDRGMDTVEANLALGFKDDEREYYIAAQMFEKLGVKSIRLLTNNPAKIEGLIEQGLNVVAREPIMVEPNEHDLEYLKVKQHKMRHMFNF
>NZ_CP006943.1|WP_025217626.1|1489475_1489940_-|6,7-dimethyl-8-ribityllumazine-synthase
MATFQGNYIATGLKFGIVATNWHKIFIDQLLNGATDKLLRHGVEAENIDTVWVPGALEISIAAKKMAQSGKYDAIICLGAVVRGSTSHYDVVVNESAKGISSSALETGVPIINGILTVENLEQAIERSGTKAGNKGEECAMVAIEMANLLKMLG
>NZ_CP006943.1|WP_025217625.1|1487924_1489430_+|apolipoprotein-N-acyltransferase
MNFAKNPPIITACIVALLLGAIGTFSYSPFDIWLLAFISCAGLIWAATLEQRKTALWATFAWSIGYFCTGVNWVSVSMTQFGGVPVVVSYVAVFLLACYLAIYNLLFSVLSHQFKLNNPFALAAIFTFTEYLRGVVFTGFPWLQFGYSLIDSPFAGIAPILGAEGLTFLVIVASGYFVKILKQESKTLPSLALLAVVFSLSFATRFLNFVQIDEEKQPLIVSLVQGNIEQKMKWDPQHFNFSVKTYEQLILPHLGKTDVIILPESAIPALENQIGGILNALDNLSRQTGSEIIIGTLYENEKEELFNSAVLLGKNEPYDLHASERYNKHHLVPFGEYVPFGSVLDWMREVFILPINLSQGSFIQSPMMAKNNRFNLAICYEIIFGDQVQQNQKSQNADYLLTITNDAWFGSSIGPWQHFQMARMRALELGKPLLRAANTGITAIVNANGKVIQQLPQFTTEVLTATLKPTKGDTPFKQFGSWLIYGLSLICLIISFLIRRR
>NZ_CP006943.1|WP_025217624.1|1486953_1487868_+|CNNM-family-magnesium/cobalt-transport-protein-CorC
MSDEQQSANISVNTTAEKSEKKSILHTLFGNLFQNEPKNREDLVEVIRDSVENELIDSDTKEMIEGVMEISELRVRDIMIPRAQIIFIDANEPLETFIDVIVESAHSRFPVIRGEKDTIEGILHSKDLLKYLRSDSEPFNLQEIIRPAVIVPESKRLDRMLKEFRSERFHMAVVVDEFGAVSGLVTIEDILEQIVGEIDDEFDEEEVKPIRQLSRHTYAVLPLTDIKKFNEFFATNFNDEEVDTIGGLVMKAFGYFPKRDEQIELEGLGFKVTSANSRRLIQLRVTLSDEQLEKMEQYSQSEEE
>NZ_CP006943.1|WP_025217623.1|1486206_1486815_-|DUF2057-family-protein
MKLTKMALTAAALVVSSMSVAGTLSSSNMVEILAFDGQRVKKGTTSVQISDNKTHQVVIEIGGTVEGSFFTSDQIILTFQGTTENATIEPPRLKSKLDIRSFQDNQRVTIKSESGNVIAHKQDFLKGEGFLAKTRVEENLSKYNLGKNPASVEQFANAALEAKGQIIVDTNKVSESELQLLFQKADPKTQKRFLDWAKKNTK
>NZ_CP006943.1|WP_025217622.1|1484661_1486053_-|MATE-family-efflux-transporter
MNLRWQEYPHNASKLFKLSLPIFISQLSASGMGLADIVMAGLVSDDDVSAIAVSNSIYFPLFLFVLGLLNAITPTVSYLNGSGNRHLIAHQIRQGVWLVLATSVPLIAIFLNSHLILDLMETPAEFSLKSQQYLAVMAVGLVPALLSINLRCMNDGLSNPKPAMRITFFGLLLNIPLNYIFIFGKFGLPEMGAVGCGVATVMVNWIMFLMMLHYCYTNPAQKDIRLFEKWIEAPSGQILLKLCKLGLPIAFAIFTEVMLFSTSSLFLSPLGSQVVASHQAALQTSSLFFMIPMSFGIATTIMVGQTLGEKNVEGAKILSYHALITATILAIIAAIIIIVLKDLIPFAFTSNPISIAITANLLIFAAVYQIPDAIQAVVNGILRGYKHTQPILYVTLFCYWIISIPLGYTLARTDWIVQPMAAQGFWLVFCIGLSLAGGLLLWQMRQIQSVPAEQLIAKLERIK
>NZ_CP006943.1|WP_025217621.1|1481071_1484596_-|exodeoxyribonuclease-V-subunit-beta
MNNLNPITLPLNKSVLIEASAGTGKTFTIANIYLRLLLGVGCLPLTVEQILVVTFTKAATEELKNRIRKNIQQCADFLKDKVNGECIEGKSYANNLEFLEQLYPHIHHIHEALLRLSIAEREIDTASVFTIHSFCQKMLVQFAFESGVRFDLDLQPNQSDLLKKLSEDVWREQFYPQGVKESEIISAELTTPERALNAVRNYLASELPEPKAFLAQDFTEQLAQYNRFIDEVKSYWKANGEALVEAIRHDLKNKTTLHGGWYRSATFETGVIVMNQWVNSSNRDLPDEFHLFTVGRIAAGTKKSCEPMDLPQLAKNQDFLTAYQQQFKNSLKAILLYQFLIGLKTKLAEYKQSHPERGFDDLLTMLNQALKNPQTGKALAQKIRSIYPFAMIDEFQDTDLTQYEIFSQIFMDGQSDNGFIMIGDPKQSIYKFRGADIFTYLRAAKQADEQFTLGKNWRSLPEVVQAVNNLFHFANDEKSPFLYDDIGFHPVEADSRKGKLMSEQGHFVCYTSDKTKLDDVAEICAYQIYQQLNAMCGGNFGIKKNGEFKPFEPKDIAILVRKGSQAKRIKKALAKRNIKSVYLAESASVFGSEIATELCWILQAGLNPYNYKALLSALGSTLWGLSAVEIYRYKENEMLWDLKVNQFVEYSTIWKEQGILPMLHKIYLEQGIIERLKGLPNADRLITDLLHLTEILQETSQALESEAELVRWYEKEISSPDFNDEQQLRLESEEELIKIITVHGSKGLQYPIVWLPFAAEKSEGDTKVNLGLYRNQKGDLDWYLGEEEAKEQIQNEAYAEDLRLFYVALTRAESQLNLVLPKMISGWSPLHYLLAEGELPKDEVSVADYFEKKQISADIIEVAEHLPFSRWESGKTEESYQAKTFSGNIRVVGQITSFTSLYAQHERFSEGKAERVIDLAQDRDVHMELIEPDYTMETDAFSPFQFPHGIKVGTVLHSFFEHCRFGEQIDKESVAKVCEQLGLSEEWLEPTLGWFERILATPLPEANFCLKEIDETKRLNEWQFYLRLKNDKALHQLNALLKQHSPLAKNLPELQLPQLEGFVRGFVDCIVQMNGKFYLIDYKSNFLGYLPQNYSTENIQREMGRQRYDLQYLLYTLAVHRYLTVRLSEYYDYERDFGGVAYLFLRAMNGENASGVYFDKPSKLLIEEMDRLFG
>NZ_CP006943.1|WP_025217631.1|1496641_1496935_-|CRISPR-associated-endonuclease-Cas2
MMMLITYDISFDDPEGQKRLRYIAKHCLDYDVRAQYSVFECDVTPDQWVKLKQKLLATYNPELDSLCFYHLGSKWRNKVEHHGAKKAVDLFKDTLIL
>NZ_CP006943.1|WP_025217632.1|1496984_1497998_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLQNTLYITTQGSYLHKEREPLVVEQDRKKVAQLPIHSIGHIFCFGNVLVSPFLMGFCGENNVNLAFFTENGRYLGRLQGRQSGNVLLRRAQYKKSETNPVPVARNIIAAKIQASKRVLQRQIRNHGENADLQSTITALNYSLQQLKTADNLDLIRGIEGDAAARYFGVFSHLIKENSGFHFDGRNRRPPRDGVNALLSFLYSIVGKDISGALQGVGLDPQIGFLHADRPGRDSLAQDILEEFRAWWVDRMVLSLINRGQIKPSDFIHESSGAVTLKPEERKLIFQTLQAKKQEKIIHPFLEEEVEIGSLPYIQSMLLARHLRGDLAEYPPFLMR
>NZ_CP006943.1|WP_025217633.1|1498043_1498385_-|hypothetical-protein
MNAIDQKDIDEFDKIRKHRNELAHDPFSFISESEKNLDVEKFSNLIDLLIKIEKWWFINFECEITPDIYTKSLKLDEVITPSQWQLKLLFDIALGNEPEENFYLNHFINNKSL
>NZ_CP006943.1|WP_025217634.1|1498454_1498637_-|hypothetical-protein
MNYLDKNWEKFLSSKELKGNLISISLFITTFELFKKRIIDMPVEFFSDEFDKDKGWILSQ
>NZ_CP006943.1|WP_025217635.1|1498645_1500124_-|cobalt-transporter
MNRKTVLELTADEARKFFLKHESYCNIDLPKYFSFSEILEKVSQELSDKSLSDFKKKDTDGKYIMSRLDDINYLMYANKDGKLSWRPLQIIHPLVCVSLVHEITKPENWEKLHSRFREFQENSKIKCLSIPIQSENKQSDKAQQISNWWEQVEHQSILLSLEYDYIFDTDVADCYGSVYTHAIAWSVEGRENAKENRNGGLGNYIDKSIQNAQYGQTNGIPQGSVLMDFIAEIVLGYIDKILSEKLDGQQISKYKILRYRDDYKIFVHNPNEGEKILQLLAEIMMPFGFKLNSSKTKGSQDVISQSIKKAKLAWLAIPQNNRVSLQKQILLIRQHSINFPNSGSLNTVLNKFDNKLEKMNKIQSIEQLTSIVTDIAYHNPKVIPVCCAIISKLLDKLDNNKSIAKLVHKKLSRMPNSGFTQIWLQRMLKANLDDYDFSEKMCNLQEISLWNNDWVKESNMLNILNNTLIFHKDKFDELNDVIQNEEIDIFDY
>NZ_CP006943.1|WP_025217636.1|1500156_1500828_-|CRISPR-associated-protein-Cas4
MDDLQNSTEILPLVPPQFGDDKRSILLSALQHYAFCPRQCVLIHNEQVWAENYLTAQGQALHERVDSGEPETRKGIRFERTVHVAAEKLGISGILDLVERDLKTGELKPVEYKRGKPKLEPMDEIQLCAQALCLEEMTGQTINEGALWYMQTRHRLPIIFSTELRTKTLATIAEVRSLLNSGTTPLPKYSKRCKACSLIDLCQPQLLEKDRSKGYVVGVFGGD
>NZ_CP006943.1|WP_025217637.1|1500827_1501691_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSIQNRYEFVFFFDVTNGNPNGDPDAGNMPRLDPETSKGLVTDVCLKRKIRNFIEMSYENEAGYEIYVKEKSVLNLQNKRAYEALGIESEAKKLPKEESKAREITAWMCKNFFDIRTFGAVMTTEVNSGQVRGPVQLAFAQSIDPIIPLEVSITRMAVTNEKDLEKERTMGRKYIVPYALYRVHGFISAKLAEKTGFSDEDVQKLWQALQLMFEHDRSATRGEMAARKLVVFKHDSELGNQPAHKLFERVKVERVNGEKDTPAKSYDDYRISVQAEGLTGVTVEELL
>NZ_CP006943.1|WP_025217638.1|1501700_1503479_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILSALTRYYYRLAAQEDRSTGEAKVPSYGFSEEKIGWVLELDSKGNLVNVISNLTEYKKPKPKLMSVPRPEKRTSGIKPNFLWDKTAYVLGIESNPDKATAKDQPINFAEKTFEAFKQYHLDLLADSNDEGLVAIKNFLQQWQPTHFAESICPSEILDANVVFKLVGTSGYIHQREAAQSLWGRLLVSEESEQGLCLISGEIAPIARLHPAIKGVYGGQSAGGSIISFNKESFTSFGKEQGSNAPVSEQAAFAYTTALNYLLRTEKHRLTIGDASTVFWAEADNTTQAEAAEGFFAALMTPPDDDQENQKIFDELQKISKGRPLAEISPELSENTRFYVLGLAPNAARISVRFWLDTTFGQLAKNLSEHWQDLAIEPCAWKNPPSIWRLLLQTASLGKSENISPVLAGEMARAVISGHLYPMSLLSQLVTRIRADGDINGLRVALMKAVLQRKFRKGFIKEGVPMSLNKESDNHAYLLGRLFAVLERIQTQALGELNAGIADRYYGSASAVPFSVFPRLLSGAKHHLSRLRKDKGGMAVNLDKDLGEIIARLPENFPRHLSIDEQGRFAIGYYHQKQSYFAKKETTESIEN
>NZ_CP006943.1|WP_025217639.1|1503475_1504153_-|type-I-C-CRISPR-associated-protein-Cas5
MPNKIRLHIWGDYACFTRPEMKVERVSYDVITPSAARGILAAVHWKPAIRWVIDKIYILKPIQFESVRRNELGSKISATKISGAMKRKTVADLYTVIEDDRQQRAATVLKNVGYVIEAHAVLTKMAGEAETVTKHIEMFKRRAKKGQCFQQPCMGVREFAANFALIDDDEPLPECFLAENERDRDLGWMLHDIDFEYGNQPRFFRAEMKNGVIDVPPFYAEEVKS
>NZ_CP006943.1|WP_025217640.1|1504345_1505209_-|DUF4231-domain-containing-protein
MTEQDFPALYRSADKLSLDSQKYFFKVLLAHLTVLVFAAILPFSPFFMEWIPVLQLISLLSALGFSIYLWAARPDRYWYAGRAVAESVKTITWRYISKAEPFHTEDSFAQNEFKNSLKLIFDQNRDVCSKLIDHSNEEQFTEAMNQMRCSSLEERRNNYCENRIKNQRDWYAKKAAYNKRIGNWFFLGLVISNVIAVILASLKLCNINPAYLPVDVAITLAAGILSWIQAKRFTELSASYALTAHEIGFINEKSATIQSEEDFSKFVGDAENAFSREHTQWAARRDV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP006943_1	1.4\|1314505\|34\|NZ_CP006943\|CRISPRCasFinder,CRT,PILER-CR	1314505-1314538	34	NZ_CP006943.1	937784-937817	1	0.971

1. spacer 1.4|1314505|34|NZ_CP006943|CRISPRCasFinder,CRT,PILER-CR matches to position: 937784-937817, mismatch: 1, identity: 0.971

atggtatcaaaaccatattcacaacgtggcaaat	CRISPR spacer
atggtatcaaaaccatattcacaacgtggcgaat	Protospacer
******************************.***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP006943_1	1.1\|1314308\|34\|NZ_CP006943\|CRISPRCasFinder,CRT	1314308-1314341	34	NC_028853	Mannheimia phage vB_MhS_535AP2, complete genome	36305-36338	2	0.941
NZ_CP006943_1	1.1\|1314308\|34\|NZ_CP006943\|CRISPRCasFinder,CRT	1314308-1314341	34	KP137439	Mannheimia phage vB_MhS_3927AP1, complete genome	38261-38294	2	0.941
NZ_CP006943_1	1.1\|1314308\|34\|NZ_CP006943\|CRISPRCasFinder,CRT	1314308-1314341	34	NC_028956	Mannheimia phage vB_MhS_1152AP2, complete genome	38368-38401	2	0.941
NZ_CP006943_1	1.5\|1314571\|34\|NZ_CP006943\|CRISPRCasFinder,CRT,PILER-CR	1314571-1314604	34	NC_028853	Mannheimia phage vB_MhS_535AP2, complete genome	17731-17764	3	0.912
NZ_CP006943_1	1.5\|1314571\|34\|NZ_CP006943\|CRISPRCasFinder,CRT,PILER-CR	1314571-1314604	34	KP137439	Mannheimia phage vB_MhS_3927AP1, complete genome	17731-17764	3	0.912
NZ_CP006943_1	1.5\|1314571\|34\|NZ_CP006943\|CRISPRCasFinder,CRT,PILER-CR	1314571-1314604	34	NC_028956	Mannheimia phage vB_MhS_1152AP2, complete genome	17838-17871	3	0.912
NZ_CP006943_1	1.5\|1314571\|34\|NZ_CP006943\|CRISPRCasFinder,CRT,PILER-CR	1314571-1314604	34	NC_028743	Mannheimia phage vB_MhS_587AP2, complete genome	17663-17696	3	0.912
NZ_CP006943_1	1.8\|1314774\|35\|NZ_CP006943\|CRISPRCasFinder,CRT,PILER-CR	1314774-1314808	35	NZ_CP028866	Borreliella garinii strain 20047 plasmid lp17, complete sequence	7798-7832	9	0.743
NZ_CP006943_1	1.8\|1314774\|35\|NZ_CP006943\|CRISPRCasFinder,CRT,PILER-CR	1314774-1314808	35	NZ_CP018751	Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed4	13058-13092	9	0.743
NZ_CP006943_2	2.5\|1496311\|34\|NZ_CP006943\|CRISPRCasFinder	1496311-1496344	34	NZ_CP051545	Paracoccus sanguinis strain OM2164 plasmid pPspOM7, complete sequence	429-462	9	0.735
NZ_CP006943_2	2.5\|1496311\|34\|NZ_CP006943\|CRISPRCasFinder	1496311-1496344	34	NC_019356	Paracoccus marcusii plasmid pMOS6, complete sequence	190-223	9	0.735
NZ_CP006943_2	2.14\|1496311\|33\|NZ_CP006943\|PILER-CR	1496311-1496343	33	NZ_CP051545	Paracoccus sanguinis strain OM2164 plasmid pPspOM7, complete sequence	430-462	9	0.727
NZ_CP006943_2	2.14\|1496311\|33\|NZ_CP006943\|PILER-CR	1496311-1496343	33	NC_019356	Paracoccus marcusii plasmid pMOS6, complete sequence	191-223	9	0.727
NZ_CP006943_1	1.6\|1314637\|36\|NZ_CP006943\|CRISPRCasFinder,CRT,PILER-CR	1314637-1314672	36	MN693950	Marine virus AFVG_250M300, complete genome	34891-34926	10	0.722

1. spacer 1.1|1314308|34|NZ_CP006943|CRISPRCasFinder,CRT matches to NC_028853 (Mannheimia phage vB_MhS_535AP2, complete genome) position: , mismatch: 2, identity: 0.941

tttaagttgtagcagtcacacaac-tagccattca	CRISPR spacer
tttaagttgtagcagttacacaacttagccattc-	Protospacer
****************.******* *********

2. spacer 1.1|1314308|34|NZ_CP006943|CRISPRCasFinder,CRT matches to KP137439 (Mannheimia phage vB_MhS_3927AP1, complete genome) position: , mismatch: 2, identity: 0.941

tttaagttgtagcagtcacacaac-tagccattca	CRISPR spacer
tttaagttgtagcagttacacaacttagccattc-	Protospacer
****************.******* *********

3. spacer 1.1|1314308|34|NZ_CP006943|CRISPRCasFinder,CRT matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 2, identity: 0.941

tttaagttgtagcagtcacacaac-tagccattca	CRISPR spacer
tttaagttgtagcagttacacaacttagccattc-	Protospacer
****************.******* *********

4. spacer 1.5|1314571|34|NZ_CP006943|CRISPRCasFinder,CRT,PILER-CR matches to NC_028853 (Mannheimia phage vB_MhS_535AP2, complete genome) position: , mismatch: 3, identity: 0.912

gtgtgccgacatttaactgaccgctcacattatt	CRISPR spacer
gcgtaccgacatttagctgaccgctcacattatt	Protospacer
*.**.**********.******************

5. spacer 1.5|1314571|34|NZ_CP006943|CRISPRCasFinder,CRT,PILER-CR matches to KP137439 (Mannheimia phage vB_MhS_3927AP1, complete genome) position: , mismatch: 3, identity: 0.912

gtgtgccgacatttaactgaccgctcacattatt	CRISPR spacer
gcgtaccgacatttagctgaccgctcacattatt	Protospacer
*.**.**********.******************

6. spacer 1.5|1314571|34|NZ_CP006943|CRISPRCasFinder,CRT,PILER-CR matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 3, identity: 0.912

gtgtgccgacatttaactgaccgctcacattatt	CRISPR spacer
gcgtaccgacatttagctgaccgctcacattatt	Protospacer
*.**.**********.******************

7. spacer 1.5|1314571|34|NZ_CP006943|CRISPRCasFinder,CRT,PILER-CR matches to NC_028743 (Mannheimia phage vB_MhS_587AP2, complete genome) position: , mismatch: 3, identity: 0.912

gtgtgccgacatttaactgaccgctcacattatt	CRISPR spacer
gcgtaccgacatttaactgaccactcacattatt	Protospacer
*.**.*****************.***********

8. spacer 1.8|1314774|35|NZ_CP006943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028866 (Borreliella garinii strain 20047 plasmid lp17, complete sequence) position: , mismatch: 9, identity: 0.743

catcgacatctttcattacctcttttagaggtcct	CRISPR spacer
tgtctacatctttcattaactcttttatacatttt	Protospacer
..** ************* ******** * .*..*

9. spacer 1.8|1314774|35|NZ_CP006943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018751 (Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed4) position: , mismatch: 9, identity: 0.743

catcgacatctttcattacctcttttagaggtcct	CRISPR spacer
tgtctacatctttcattaactcttttatacatttt	Protospacer
..** ************* ******** * .*..*

10. spacer 2.5|1496311|34|NZ_CP006943|CRISPRCasFinder matches to NZ_CP051545 (Paracoccus sanguinis strain OM2164 plasmid pPspOM7, complete sequence) position: , mismatch: 9, identity: 0.735

ggagttgatgagtgaagactttgacgaagtggac	CRISPR spacer
tcactccatcagcgaagactttgacgaagtgttc	Protospacer
  * *. ** **.******************  *

11. spacer 2.5|1496311|34|NZ_CP006943|CRISPRCasFinder matches to NC_019356 (Paracoccus marcusii plasmid pMOS6, complete sequence) position: , mismatch: 9, identity: 0.735

ggagttgatgagtgaagactttgacgaagtggac	CRISPR spacer
ttactccatcagcgaagactttgacgaagtgttc	Protospacer
  * *. ** **.******************  *

12. spacer 2.14|1496311|33|NZ_CP006943|PILER-CR matches to NZ_CP051545 (Paracoccus sanguinis strain OM2164 plasmid pPspOM7, complete sequence) position: , mismatch: 9, identity: 0.727

ggagttgatgagtgaagactttgacgaagtgga	CRISPR spacer
tcactccatcagcgaagactttgacgaagtgtt	Protospacer
  * *. ** **.******************

13. spacer 2.14|1496311|33|NZ_CP006943|PILER-CR matches to NC_019356 (Paracoccus marcusii plasmid pMOS6, complete sequence) position: , mismatch: 9, identity: 0.727

ggagttgatgagtgaagactttgacgaagtgga	CRISPR spacer
ttactccatcagcgaagactttgacgaagtgtt	Protospacer
  * *. ** **.******************

14. spacer 1.6|1314637|36|NZ_CP006943|CRISPRCasFinder,CRT,PILER-CR matches to MN693950 (Marine virus AFVG_250M300, complete genome) position: , mismatch: 10, identity: 0.722

ttattacctgactttttagaaatgctggacgattta	CRISPR spacer
gtacataatgactttttagaaatactggaagattgt	Protospacer
 **.    ***************.***** ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

326319 : 335998

Enterobacteria_phage(66.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025216593.1\|326319_328029_+	hypothetical protein	F2Y0P4	Organic_Lake_phycodnavirus	1.5e-14	31.0
WP_025216594.1\|328018_328918_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_025216595.1\|328932_330000_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.5e-100	52.2
WP_025216596.1\|330001_330880_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	7.1e-109	66.0
WP_025216597.1\|330879_331755_+	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	2.0e-42	41.1
WP_025216598.1\|331763_332306_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.2e-51	53.1
WP_025216599.1\|332359_333616_-	O-antigen ligase family protein	NA	NA	NA	NA
WP_006252283.1\|333864_334080_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_025216600.1\|334234_335998_+	DNA primase	A0A1B0WMR3	Flavobacterium_phage	1.0e-37	30.3

DBSCAN-SWA_2

918502 : 970835

Mannheimia_phage(38.64%)

integrase,terminase,head,holin

attL 911041:911055|attR 930029:930043

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
911041:911055	attL	NA	NA	NA	NA
WP_025217121.1\|918502_919927_+	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	5.5e-42	27.7
WP_025217122.1\|920444_921695_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	2.6e-72	39.1
WP_081733963.1\|921657_921855_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_025217123.1\|922109_922775_-	antirepressor	A0A0M3LQ72	Mannheimia_phage	2.9e-54	92.6
WP_025217124.1\|923018_923372_-	DUF2513 domain-containing protein	A0A1W6JNL0	Staphylococcus_phage	4.8e-08	33.6
WP_025217125.1\|923763_923952_+	hypothetical protein	A0A0M3LSW7	Mannheimia_phage	2.4e-22	80.6
WP_025217126.1\|923986_924280_-	hypothetical protein	A0A249Y2S0	Serratia_phage	6.4e-06	39.8
WP_025217130.1\|925258_926101_-	hypothetical protein	NA	NA	NA	NA
WP_025217131.1\|926124_926889_-	hypothetical protein	A0A0M3LPL3	Mannheimia_phage	3.0e-39	72.2
WP_025217132.1\|926905_927103_-	hypothetical protein	NA	NA	NA	NA
WP_025217133.1\|927166_927961_-	hypothetical protein	A0A2I7RDY8	Vibrio_phage	4.1e-15	26.7
WP_038643393.1\|927960_928620_-	hypothetical protein	A0A0M3LP90	Mannheimia_phage	4.1e-109	86.3
WP_025217135.1\|928624_929560_-	hypothetical protein	A0A0M3LNU3	Mannheimia_phage	1.5e-24	33.0
WP_025217136.1\|929571_929784_-	hypothetical protein	A0A0M3LQW3	Mannheimia_phage	6.8e-26	82.6
WP_155930844.1\|929783_929948_-	hypothetical protein	NA	NA	NA	NA
WP_025217137.1\|929949_930306_-	hypothetical protein	NA	NA	NA	NA
930029:930043	attR	NA	NA	NA	NA
WP_155930845.1\|930302_930446_-	hypothetical protein	A0A0M3LSX3	Mannheimia_phage	3.5e-10	73.9
WP_025217138.1\|931353_931950_+	hypothetical protein	NA	NA	NA	NA
WP_006247789.1\|931986_932724_-	hypothetical protein	NA	NA	NA	NA
WP_006247790.1\|932875_933250_-	hypothetical protein	NA	NA	NA	NA
WP_025217139.1\|933261_933933_-	LexA family transcriptional regulator	A0A0M3LSL8	Mannheimia_phage	1.3e-57	52.5
WP_025217140.1\|934061_934271_+	helix-turn-helix transcriptional regulator	A0A0M3LSY2	Mannheimia_phage	3.7e-16	61.5
WP_025217141.1\|934301_934673_-	hypothetical protein	NA	NA	NA	NA
WP_081733964.1\|934985_936044_+	replication protein	A0A0M3LQL8	Mannheimia_phage	1.4e-31	50.0
WP_025217142.1\|936043_937462_+	AAA family ATPase	Q7Y5V9	Haemophilus_phage	1.8e-162	60.9
WP_025217143.1\|937463_937994_+	adenine methyltransferase	A0A0M3LNW2	Mannheimia_phage	4.1e-43	51.8
WP_025217144.1\|937986_938439_+	DUF1367 family protein	A0A0M3LPN2	Mannheimia_phage	2.3e-63	74.7
WP_025217145.1\|938488_938701_+	hypothetical protein	A0A0M3LPA2	Mannheimia_phage	3.9e-29	94.3
WP_025217146.1\|939128_939698_+	recombination protein NinG	A0A0M3LTG3	Mannheimia_phage	1.5e-80	81.5
WP_025217147.1\|939687_940161_+	hypothetical protein	A0A0M3LPW4	Mannheimia_phage	5.4e-71	85.2
WP_038643080.1\|940492_940852_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	8.1e-11	35.2
WP_025217148.1\|940893_941793_+	hypothetical protein	A0A126HDE5	Lactococcus_phage	1.1e-88	64.2
WP_167324200.1\|941892_942429_+	peptidoglycan-binding protein LysM	NA	NA	NA	NA
WP_081733965.1\|942463_942835_+	DUF2570 family protein	A0A0M3LPB1	Mannheimia_phage	5.8e-12	72.7
WP_167324194.1\|942839_943013_+	hypothetical protein	A0A0M3LSZ0	Mannheimia_phage	1.1e-24	89.5
WP_025217151.1\|943180_943678_+	hypothetical protein	C7U0W1	Enterobacteria_phage	8.8e-48	70.4
WP_025217152.1\|943680_945060_+\|terminase	phage terminase large subunit	A0A0D4DCE6	Acinetobacter_phage	9.0e-151	62.0
WP_025217153.1\|945125_946640_+	DUF1073 domain-containing protein	I7B6L5	Escherichia_phage	6.7e-115	49.0
WP_025217154.1\|946614_947445_+\|head	phage head protein	H9C0V1	Aeromonas_phage	9.9e-20	29.1
WP_025217155.1\|947509_948793_+	DUF2213 domain-containing protein	Q6IWU4	Burkholderia_phage	6.0e-40	34.6
WP_025217156.1\|948804_949314_+	hypothetical protein	NA	NA	NA	NA
WP_025217157.1\|949325_950453_+	DUF2184 domain-containing protein	I6ZXX2	Escherichia_phage	8.3e-78	46.8
WP_025217158.1\|950523_950898_+	hypothetical protein	NA	NA	NA	NA
WP_025217159.1\|950900_951320_+	DUF4054 domain-containing protein	A0A0S1WH65	Pseudomonas_phage	7.5e-24	44.5
WP_025217160.1\|951316_951808_+	hypothetical protein	A0A0M4S631	Salmonella_phage	2.0e-07	31.7
WP_025217161.1\|951810_952515_+	hypothetical protein	NA	NA	NA	NA
WP_025217162.1\|952520_952901_+	hypothetical protein	NA	NA	NA	NA
WP_025217163.1\|952885_953392_+	hypothetical protein	NA	NA	NA	NA
WP_025217164.1\|953407_954886_+	DUF3383 domain-containing protein	K4PB47	Acinetobacter_phage	1.5e-98	41.3
WP_006252050.1\|954942_955386_+	hypothetical protein	Q8HAQ5	Burkholderia_phage	4.5e-11	35.1
WP_051410677.1\|955515_955872_+	hypothetical protein	A0A0M4REH5	Salmonella_phage	2.7e-22	46.2
WP_025217165.1\|955884_956289_+	hypothetical protein	NA	NA	NA	NA
WP_167324195.1\|956315_956462_+	hypothetical protein	NA	NA	NA	NA
WP_025217166.1\|956461_959140_+	peptidoglycan-binding protein LysM	A0A220NQH4	Acinetobacter_phage	2.2e-68	42.0
WP_025217167.1\|959139_959823_+	hypothetical protein	NA	NA	NA	NA
WP_025217168.1\|959825_960929_+	hypothetical protein	NA	NA	NA	NA
WP_025217169.1\|961363_962239_+	antirepressor	Q0H8C7	Salmonella_phage	1.3e-67	49.0
WP_155930846.1\|962359_962896_+	hypothetical protein	NA	NA	NA	NA
WP_025217171.1\|962946_963654_+	hypothetical protein	NA	NA	NA	NA
WP_025217172.1\|963656_963953_+	hypothetical protein	NA	NA	NA	NA
WP_025217173.1\|963952_964840_+	hypothetical protein	A0A220NQG9	Acinetobacter_phage	3.9e-46	35.8
WP_025217174.1\|964829_965492_+	hypothetical protein	K4HZB6	Acinetobacter_phage	5.1e-35	41.7
WP_025217175.1\|965497_965848_+	hypothetical protein	A0A2R3UAP1	Myoviridae_environmental_samples	1.6e-11	36.0
WP_025217176.1\|965844_967041_+	hypothetical protein	H9C0X9	Aeromonas_phage	1.2e-55	33.6
WP_025217177.1\|967037_967655_+	DUF2612 domain-containing protein	A0A2R3UAM9	Myoviridae_environmental_samples	1.9e-28	32.2
WP_025217179.1\|969784_970381_+	hypothetical protein	NA	NA	NA	NA
WP_025217180.1\|970373_970835_+	hypothetical protein	F6MIM0	Haemophilus_phage	5.8e-54	60.9

DBSCAN-SWA_3

1425086 : 1434939

Chrysochromulina_ericina_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025217571.1\|1425086_1426940_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.5e-108	42.9
WP_025217572.1\|1426999_1427632_-	DUF2625 family protein	NA	NA	NA	NA
WP_025217573.1\|1427666_1428188_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
WP_025217574.1\|1428197_1428521_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.7e-23	46.7
WP_025217575.1\|1428629_1429013_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.3e-51	75.0
WP_025217576.1\|1429043_1430264_-	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	5.0e-28	29.4
WP_025217577.1\|1430320_1430773_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
WP_025217578.1\|1431126_1432467_+	membrane protein	NA	NA	NA	NA
WP_025217579.1\|1432530_1433085_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	1.7e-28	44.0
WP_025217580.1\|1433097_1434939_-	response regulator	A0A1V0SGX0	Hokovirus	1.2e-41	29.8

Anti-CRISPR protein detection

Acr_ID: NZ_CP006943.1|WP_025217125.1|923763_923952_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP006943.1|WP_025217125.1|923763_923952_+|hypothetical-protein

923763_923952_+

62 aa aa

918502-970835

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP006943_1	Orphan	1.4\|1314505\|34\|NZ_CP006943\|CRISPRCasFinder,CRT,PILER-CR	1314505-1314538	34	937784-937817	1

1. spacer 1.4|1314505|34|NZ_CP006943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006943 position: 937784-937817, mismatch: 1

atggtatcaaaaccatattcacaacgtggcaaat	CRISPR spacer
atggtatcaaaaccatattcacaacgtggcgaat	Protospacer
******************************.***

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP006943

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information